Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647600 | XP_013456593.2 | 95.584 | 317 | 14 | 0 | 15 | 331 | 42 | 358 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647600 | sp|P23547|E13G_TOBAC | 54.464 | 336 | 146 | 4 | 1 | 331 | 10 | 343 | 5.46e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607350 | Msa0647600 | 0.806401 | 8.376762e-50 | -8.615850e-47 |
| Msa0647600 | Msa0690380 | 0.803728 | 3.034440e-49 | -8.615850e-47 |
| Msa0553260 | Msa0647600 | 0.825655 | 4.165193e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647600 | MtrunA17_Chr4g0038941 | 95.584 | 317 | 14 | 0 | 15 | 331 | 42 | 358 | 0.0 | 619 |
| Msa0647600 | MtrunA17_Chr4g0039011 | 66.571 | 347 | 98 | 3 | 1 | 329 | 1 | 347 | 1.78e-166 | 468 |
| Msa0647600 | MtrunA17_Chr4g0038961 | 68.675 | 332 | 100 | 3 | 1 | 331 | 1 | 329 | 1.10e-164 | 462 |
| Msa0647600 | MtrunA17_Chr4g0038971 | 66.867 | 332 | 106 | 3 | 1 | 331 | 1 | 329 | 2.05e-164 | 461 |
| Msa0647600 | MtrunA17_Chr4g0038981 | 67.771 | 332 | 103 | 3 | 1 | 331 | 1 | 329 | 2.58e-162 | 456 |
| Msa0647600 | MtrunA17_Chr4g0039071 | 57.962 | 314 | 125 | 4 | 22 | 328 | 22 | 335 | 1.05e-125 | 365 |
| Msa0647600 | MtrunA17_Chr1g0174261 | 60.351 | 285 | 102 | 5 | 54 | 329 | 1 | 283 | 1.44e-114 | 335 |
| Msa0647600 | MtrunA17_Chr4g0039021 | 58.703 | 293 | 115 | 5 | 45 | 331 | 1 | 293 | 2.45e-114 | 333 |
| Msa0647600 | MtrunA17_Chr2g0294591 | 53.251 | 323 | 139 | 8 | 17 | 330 | 23 | 342 | 2.14e-109 | 323 |
| Msa0647600 | MtrunA17_Chr2g0294601 | 52.537 | 335 | 146 | 8 | 5 | 330 | 41 | 371 | 8.78e-109 | 322 |
| Msa0647600 | MtrunA17_Chr7g0250301 | 43.711 | 318 | 168 | 8 | 19 | 328 | 2 | 316 | 6.17e-82 | 251 |
| Msa0647600 | MtrunA17_Chr5g0439251 | 41.667 | 324 | 175 | 7 | 19 | 328 | 19 | 342 | 2.69e-75 | 239 |
| Msa0647600 | MtrunA17_Chr8g0389741 | 38.006 | 321 | 182 | 7 | 25 | 330 | 28 | 346 | 3.39e-74 | 237 |
| Msa0647600 | MtrunA17_Chr3g0119541 | 41.641 | 329 | 172 | 8 | 19 | 330 | 20 | 345 | 5.29e-74 | 232 |
| Msa0647600 | MtrunA17_Chr1g0189111 | 39.198 | 324 | 185 | 6 | 20 | 331 | 26 | 349 | 1.94e-71 | 228 |
| Msa0647600 | MtrunA17_Chr6g0487261 | 35.569 | 343 | 206 | 7 | 1 | 330 | 5 | 345 | 7.28e-71 | 228 |
| Msa0647600 | MtrunA17_Chr4g0034901 | 38.710 | 341 | 194 | 8 | 6 | 331 | 9 | 349 | 4.53e-70 | 225 |
| Msa0647600 | MtrunA17_Chr4g0026321 | 37.273 | 330 | 193 | 6 | 12 | 328 | 17 | 345 | 6.43e-70 | 222 |
| Msa0647600 | MtrunA17_Chr1g0146831 | 38.806 | 335 | 184 | 9 | 8 | 327 | 16 | 344 | 4.89e-69 | 220 |
| Msa0647600 | MtrunA17_Chr3g0144531 | 39.118 | 340 | 188 | 9 | 6 | 328 | 8 | 345 | 5.73e-69 | 222 |
| Msa0647600 | MtrunA17_Chr4g0043851 | 37.537 | 341 | 200 | 6 | 1 | 328 | 8 | 348 | 5.87e-69 | 220 |
| Msa0647600 | MtrunA17_Chr4g0003281 | 38.012 | 342 | 198 | 6 | 3 | 330 | 18 | 359 | 7.24e-69 | 220 |
| Msa0647600 | MtrunA17_Chr1g0177171 | 38.941 | 321 | 182 | 7 | 22 | 328 | 35 | 355 | 1.76e-68 | 222 |
| Msa0647600 | MtrunA17_Chr4g0046311 | 35.920 | 348 | 199 | 9 | 3 | 330 | 4 | 347 | 4.39e-68 | 220 |
| Msa0647600 | MtrunA17_Chr1g0161011 | 38.551 | 345 | 193 | 8 | 1 | 328 | 1 | 343 | 5.78e-68 | 221 |
| Msa0647600 | MtrunA17_Chr2g0321511 | 35.398 | 339 | 198 | 8 | 3 | 328 | 13 | 343 | 3.11e-66 | 213 |
| Msa0647600 | MtrunA17_Chr4g0064021 | 37.003 | 327 | 190 | 8 | 19 | 331 | 22 | 346 | 1.59e-65 | 211 |
| Msa0647600 | MtrunA17_Chr3g0110371 | 36.994 | 346 | 199 | 7 | 1 | 330 | 3 | 345 | 7.08e-65 | 212 |
| Msa0647600 | MtrunA17_Chr2g0285901 | 39.210 | 329 | 182 | 8 | 17 | 328 | 12 | 339 | 3.25e-64 | 208 |
| Msa0647600 | MtrunA17_Chr7g0250321 | 42.254 | 284 | 153 | 7 | 2 | 279 | 8 | 286 | 9.74e-64 | 203 |
| Msa0647600 | MtrunA17_Chr7g0234821 | 36.111 | 324 | 188 | 8 | 26 | 331 | 27 | 349 | 2.53e-62 | 205 |
| Msa0647600 | MtrunA17_Chr5g0434591 | 36.443 | 343 | 198 | 8 | 1 | 326 | 1 | 340 | 1.31e-61 | 204 |
| Msa0647600 | MtrunA17_Chr8g0339191 | 34.770 | 348 | 204 | 10 | 3 | 331 | 9 | 352 | 1.84e-61 | 202 |
| Msa0647600 | MtrunA17_Chr7g0223961 | 39.117 | 317 | 174 | 11 | 24 | 326 | 22 | 333 | 3.76e-61 | 201 |
| Msa0647600 | MtrunA17_Chr8g0383311 | 38.272 | 324 | 180 | 10 | 25 | 331 | 43 | 363 | 7.82e-61 | 202 |
| Msa0647600 | MtrunA17_Chr1g0155001 | 37.188 | 320 | 182 | 8 | 25 | 327 | 24 | 341 | 2.59e-60 | 198 |
| Msa0647600 | MtrunA17_Chr3g0138741 | 36.873 | 339 | 190 | 13 | 11 | 330 | 17 | 350 | 2.43e-57 | 192 |
| Msa0647600 | MtrunA17_Chr7g0253091 | 34.770 | 348 | 197 | 11 | 1 | 329 | 9 | 345 | 2.67e-56 | 189 |
| Msa0647600 | MtrunA17_Chr3g0129341 | 38.000 | 350 | 186 | 15 | 5 | 331 | 11 | 352 | 3.33e-55 | 187 |
| Msa0647600 | MtrunA17_Chr8g0378621 | 33.526 | 346 | 209 | 8 | 1 | 330 | 7 | 347 | 5.57e-55 | 186 |
| Msa0647600 | MtrunA17_Chr1g0148391 | 36.919 | 344 | 192 | 14 | 4 | 329 | 8 | 344 | 7.78e-55 | 186 |
| Msa0647600 | MtrunA17_Chr4g0062771 | 33.239 | 355 | 196 | 13 | 1 | 329 | 12 | 351 | 2.12e-53 | 182 |
| Msa0647600 | MtrunA17_Chr2g0290821 | 36.697 | 327 | 183 | 11 | 24 | 330 | 27 | 349 | 2.34e-53 | 182 |
| Msa0647600 | MtrunA17_Chr3g0121271 | 32.716 | 324 | 201 | 7 | 25 | 331 | 26 | 349 | 7.00e-53 | 181 |
| Msa0647600 | MtrunA17_Chr4g0043511 | 36.420 | 324 | 188 | 10 | 20 | 328 | 57 | 377 | 6.96e-52 | 179 |
| Msa0647600 | MtrunA17_Chr4g0075031 | 33.438 | 320 | 197 | 6 | 25 | 328 | 45 | 364 | 9.56e-52 | 179 |
| Msa0647600 | MtrunA17_Chr6g0461601 | 32.653 | 343 | 205 | 10 | 6 | 328 | 10 | 346 | 8.14e-51 | 175 |
| Msa0647600 | MtrunA17_Chr2g0306311 | 32.800 | 375 | 193 | 15 | 2 | 329 | 14 | 376 | 6.78e-50 | 173 |
| Msa0647600 | MtrunA17_Chr4g0069801 | 35.065 | 308 | 180 | 10 | 40 | 330 | 43 | 347 | 2.16e-49 | 172 |
| Msa0647600 | MtrunA17_Chr4g0076581 | 34.969 | 326 | 188 | 11 | 24 | 330 | 32 | 352 | 2.13e-48 | 169 |
| Msa0647600 | MtrunA17_Chr3g0105981 | 33.131 | 329 | 188 | 12 | 22 | 328 | 24 | 342 | 2.95e-47 | 164 |
| Msa0647600 | MtrunA17_Chr4g0018861 | 67.045 | 88 | 29 | 0 | 242 | 329 | 87 | 174 | 8.61e-36 | 129 |
| Msa0647600 | MtrunA17_Chr4g0018861 | 47.253 | 91 | 45 | 1 | 1 | 91 | 1 | 88 | 1.73e-22 | 94.0 |
| Msa0647600 | MtrunA17_Chr2g0294581 | 43.548 | 186 | 88 | 8 | 14 | 191 | 66 | 242 | 1.62e-35 | 130 |
| Msa0647600 | MtrunA17_Chr2g0294581 | 51.000 | 100 | 45 | 4 | 233 | 330 | 187 | 284 | 6.00e-25 | 102 |
| Msa0647600 | MtrunA17_Chr5g0436361 | 32.107 | 299 | 178 | 13 | 51 | 331 | 63 | 354 | 9.91e-35 | 130 |
| Msa0647600 | MtrunA17_Chr4g0018771 | 61.538 | 91 | 35 | 0 | 239 | 329 | 86 | 176 | 3.31e-34 | 125 |
| Msa0647600 | MtrunA17_Chr4g0018771 | 57.534 | 73 | 31 | 0 | 21 | 93 | 22 | 94 | 6.19e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647600 | AT4G16260.1 | 51.929 | 337 | 152 | 6 | 1 | 330 | 1 | 334 | 1.50e-115 | 338 |
| Msa0647600 | AT3G57270.1 | 52.201 | 318 | 144 | 5 | 20 | 330 | 23 | 339 | 2.24e-111 | 327 |
| Msa0647600 | AT3G57240.1 | 51.911 | 314 | 137 | 5 | 25 | 331 | 35 | 341 | 1.39e-108 | 320 |
| Msa0647600 | AT4G16260.2 | 53.115 | 305 | 134 | 5 | 33 | 330 | 3 | 305 | 5.90e-107 | 315 |
| Msa0647600 | AT3G57260.1 | 48.955 | 335 | 158 | 8 | 3 | 331 | 12 | 339 | 1.48e-102 | 305 |
| Msa0647600 | AT3G57260.2 | 48.955 | 335 | 158 | 8 | 3 | 331 | 28 | 355 | 1.89e-102 | 305 |
| Msa0647600 | AT2G05790.1 | 41.486 | 323 | 175 | 7 | 22 | 330 | 22 | 344 | 1.75e-74 | 237 |
| Msa0647600 | AT5G56590.1 | 37.695 | 321 | 185 | 6 | 25 | 330 | 26 | 346 | 4.30e-74 | 237 |
| Msa0647600 | AT2G01630.2 | 41.304 | 322 | 173 | 6 | 25 | 330 | 23 | 344 | 5.78e-74 | 233 |
| Msa0647600 | AT2G01630.3 | 41.304 | 322 | 173 | 6 | 25 | 330 | 23 | 344 | 2.45e-73 | 233 |
| Msa0647600 | AT4G26830.1 | 38.776 | 343 | 197 | 6 | 1 | 330 | 1 | 343 | 8.75e-73 | 232 |
| Msa0647600 | AT3G15800.1 | 39.521 | 334 | 185 | 7 | 10 | 328 | 30 | 361 | 1.13e-72 | 230 |
| Msa0647600 | AT4G26830.2 | 40.439 | 319 | 177 | 6 | 25 | 330 | 29 | 347 | 1.32e-72 | 232 |
| Msa0647600 | AT2G01630.1 | 41.562 | 320 | 171 | 6 | 25 | 328 | 23 | 342 | 1.89e-72 | 233 |
| Msa0647600 | AT5G55180.2 | 38.905 | 347 | 196 | 8 | 1 | 331 | 1 | 347 | 3.98e-71 | 228 |
| Msa0647600 | AT5G20330.1 | 40.938 | 320 | 174 | 11 | 20 | 328 | 29 | 344 | 4.25e-71 | 224 |
| Msa0647600 | AT5G55180.1 | 38.905 | 347 | 196 | 8 | 1 | 331 | 1 | 347 | 4.54e-71 | 228 |
| Msa0647600 | AT1G77780.1 | 39.349 | 338 | 186 | 10 | 4 | 328 | 1 | 332 | 6.90e-71 | 224 |
| Msa0647600 | AT5G42100.2 | 41.121 | 321 | 173 | 7 | 24 | 328 | 26 | 346 | 1.49e-70 | 226 |
| Msa0647600 | AT1G77790.1 | 37.463 | 339 | 196 | 9 | 1 | 328 | 8 | 341 | 1.69e-70 | 223 |
| Msa0647600 | AT5G42100.1 | 41.121 | 321 | 173 | 7 | 24 | 328 | 26 | 346 | 2.44e-70 | 225 |
| Msa0647600 | AT4G18340.2 | 37.243 | 341 | 199 | 6 | 4 | 331 | 15 | 353 | 3.73e-70 | 223 |
| Msa0647600 | AT4G18340.1 | 37.243 | 341 | 199 | 6 | 4 | 331 | 15 | 353 | 4.66e-70 | 223 |
| Msa0647600 | AT5G20340.1 | 41.562 | 320 | 172 | 11 | 20 | 328 | 38 | 353 | 1.27e-69 | 221 |
| Msa0647600 | AT2G26600.1 | 35.417 | 336 | 201 | 7 | 12 | 331 | 19 | 354 | 4.75e-69 | 221 |
| Msa0647600 | AT2G16230.1 | 40.123 | 324 | 179 | 7 | 20 | 328 | 19 | 342 | 8.91e-69 | 223 |
| Msa0647600 | AT1G33220.1 | 40.968 | 310 | 169 | 9 | 20 | 318 | 29 | 335 | 4.23e-68 | 216 |
| Msa0647600 | AT4G29360.2 | 37.026 | 343 | 203 | 6 | 1 | 330 | 13 | 355 | 1.39e-67 | 221 |
| Msa0647600 | AT5G20390.1 | 38.462 | 338 | 192 | 11 | 3 | 328 | 10 | 343 | 1.91e-67 | 215 |
| Msa0647600 | AT1G30080.2 | 36.176 | 340 | 204 | 5 | 2 | 328 | 13 | 352 | 3.01e-67 | 216 |
| Msa0647600 | AT5G42720.1 | 39.067 | 343 | 188 | 9 | 2 | 328 | 7 | 344 | 4.53e-67 | 217 |
| Msa0647600 | AT1G30080.1 | 36.176 | 340 | 204 | 5 | 2 | 328 | 13 | 352 | 4.63e-67 | 216 |
| Msa0647600 | AT4G34480.2 | 39.118 | 340 | 188 | 7 | 3 | 328 | 9 | 343 | 1.87e-66 | 213 |
| Msa0647600 | AT4G29360.1 | 37.168 | 339 | 199 | 7 | 6 | 330 | 7 | 345 | 1.95e-66 | 218 |
| Msa0647600 | AT5G24318.4 | 37.830 | 341 | 188 | 10 | 4 | 328 | 12 | 344 | 1.75e-65 | 211 |
| Msa0647600 | AT3G07320.1 | 36.391 | 338 | 194 | 9 | 12 | 331 | 14 | 348 | 3.16e-65 | 213 |
| Msa0647600 | AT1G32860.1 | 36.646 | 322 | 189 | 6 | 24 | 330 | 28 | 349 | 3.58e-65 | 212 |
| Msa0647600 | AT4G34480.1 | 39.118 | 340 | 188 | 7 | 3 | 328 | 9 | 343 | 8.39e-65 | 213 |
| Msa0647600 | AT2G27500.2 | 34.375 | 320 | 196 | 7 | 23 | 328 | 27 | 346 | 9.27e-65 | 209 |
| Msa0647600 | AT2G27500.1 | 34.375 | 320 | 196 | 7 | 23 | 328 | 27 | 346 | 1.40e-64 | 209 |
| Msa0647600 | AT5G24318.2 | 37.830 | 341 | 188 | 10 | 4 | 328 | 12 | 344 | 3.86e-64 | 210 |
| Msa0647600 | AT5G24318.1 | 37.830 | 341 | 188 | 10 | 4 | 328 | 12 | 344 | 5.88e-64 | 209 |
| Msa0647600 | AT1G66250.1 | 39.130 | 322 | 179 | 7 | 25 | 330 | 32 | 352 | 1.31e-63 | 210 |
| Msa0647600 | AT5G20560.1 | 37.349 | 332 | 187 | 9 | 7 | 320 | 8 | 336 | 7.99e-63 | 203 |
| Msa0647600 | AT4G14080.1 | 36.280 | 328 | 187 | 9 | 22 | 330 | 39 | 363 | 4.15e-62 | 205 |
| Msa0647600 | AT3G23770.1 | 35.866 | 329 | 190 | 8 | 22 | 330 | 34 | 361 | 6.78e-60 | 199 |
| Msa0647600 | AT3G61810.1 | 35.294 | 323 | 188 | 7 | 25 | 331 | 55 | 372 | 2.39e-59 | 195 |
| Msa0647600 | AT3G13560.4 | 34.049 | 326 | 199 | 6 | 17 | 326 | 18 | 343 | 3.94e-56 | 190 |
| Msa0647600 | AT3G13560.1 | 34.049 | 326 | 199 | 6 | 17 | 326 | 18 | 343 | 3.94e-56 | 190 |
| Msa0647600 | AT3G13560.2 | 34.049 | 326 | 199 | 6 | 17 | 326 | 18 | 343 | 3.94e-56 | 190 |
| Msa0647600 | AT3G13560.5 | 34.049 | 326 | 199 | 6 | 17 | 326 | 18 | 343 | 3.94e-56 | 190 |
| Msa0647600 | AT3G13560.3 | 34.049 | 326 | 199 | 6 | 17 | 326 | 18 | 343 | 3.94e-56 | 190 |
| Msa0647600 | AT3G24330.1 | 35.362 | 345 | 203 | 10 | 4 | 330 | 18 | 360 | 7.53e-56 | 189 |
| Msa0647600 | AT5G58090.1 | 36.697 | 327 | 185 | 12 | 22 | 330 | 19 | 341 | 7.50e-55 | 186 |
| Msa0647600 | AT1G11820.1 | 32.188 | 320 | 201 | 6 | 25 | 328 | 44 | 363 | 2.66e-54 | 182 |
| Msa0647600 | AT4G31140.1 | 35.652 | 345 | 197 | 13 | 4 | 330 | 9 | 346 | 3.06e-54 | 185 |
| Msa0647600 | AT3G46570.1 | 36.686 | 338 | 186 | 12 | 11 | 328 | 13 | 342 | 7.31e-54 | 180 |
| Msa0647600 | AT2G19440.2 | 34.483 | 348 | 202 | 13 | 1 | 330 | 1 | 340 | 1.10e-53 | 183 |
| Msa0647600 | AT2G19440.1 | 34.483 | 348 | 202 | 13 | 1 | 330 | 1 | 340 | 1.10e-53 | 183 |
| Msa0647600 | AT5G18220.1 | 34.524 | 336 | 198 | 12 | 9 | 326 | 12 | 343 | 1.63e-53 | 183 |
| Msa0647600 | AT1G11820.3 | 32.188 | 320 | 201 | 6 | 25 | 328 | 44 | 363 | 3.24e-53 | 182 |
| Msa0647600 | AT2G26600.2 | 36.047 | 258 | 152 | 5 | 87 | 331 | 3 | 260 | 5.60e-53 | 176 |
| Msa0647600 | AT5G58480.1 | 34.769 | 325 | 194 | 8 | 23 | 331 | 24 | 346 | 8.17e-53 | 181 |
| Msa0647600 | AT1G11820.2 | 32.188 | 320 | 201 | 6 | 25 | 328 | 44 | 363 | 8.56e-53 | 181 |
| Msa0647600 | AT2G27500.3 | 34.701 | 268 | 161 | 7 | 75 | 328 | 1 | 268 | 1.72e-52 | 176 |
| Msa0647600 | AT3G04010.1 | 32.749 | 342 | 208 | 10 | 7 | 330 | 15 | 352 | 2.15e-52 | 180 |
| Msa0647600 | AT1G64760.1 | 34.675 | 323 | 191 | 10 | 25 | 330 | 25 | 344 | 1.08e-51 | 178 |
| Msa0647600 | AT1G64760.2 | 34.675 | 323 | 191 | 10 | 25 | 330 | 25 | 344 | 1.08e-51 | 178 |
| Msa0647600 | AT2G39640.1 | 32.448 | 339 | 208 | 10 | 1 | 328 | 10 | 338 | 1.46e-51 | 179 |
| Msa0647600 | AT5G64790.1 | 33.526 | 346 | 206 | 11 | 4 | 330 | 7 | 347 | 2.12e-50 | 174 |
| Msa0647600 | AT3G55430.1 | 35.625 | 320 | 185 | 11 | 24 | 328 | 28 | 341 | 3.42e-50 | 173 |
| Msa0647600 | AT4G34480.3 | 42.609 | 230 | 120 | 4 | 111 | 328 | 3 | 232 | 1.23e-47 | 165 |
| Msa0647600 | AT4G17180.1 | 32.258 | 341 | 206 | 11 | 5 | 330 | 9 | 339 | 8.94e-47 | 165 |
| Msa0647600 | AT5G20870.1 | 31.534 | 352 | 212 | 12 | 3 | 330 | 10 | 356 | 2.63e-43 | 156 |
| Msa0647600 | AT5G24318.3 | 39.524 | 210 | 110 | 6 | 131 | 328 | 1 | 205 | 1.98e-39 | 142 |
| Msa0647600 | AT3G55780.1 | 30.464 | 302 | 187 | 11 | 48 | 331 | 58 | 354 | 2.07e-35 | 132 |
Find 84 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACTAATTTGATATTT+AGG | 0.137293 | 4_3:+53662768 | None:intergenic |
| GGAAATGCACAAACATATTA+TGG | 0.170246 | 4_3:-53662936 | Msa0647600:CDS |
| CTTCTATGTTTGAACCTCTA+AGG | 0.203767 | 4_3:+53663540 | None:intergenic |
| TCTCTCATATTGCTGCTTAT+TGG | 0.205984 | 4_3:-53663838 | Msa0647600:CDS |
| TCGCGGTAGACACTTTAATT+TGG | 0.242868 | 4_3:+53663303 | None:intergenic |
| GCGATAGACACAACACTAAT+TGG | 0.256481 | 4_3:-53663284 | Msa0647600:CDS |
| TTATTAACATATGAGAAATA+AGG | 0.277410 | 4_3:+53663149 | None:intergenic |
| CTATGCTTTGTTTACAAAAC+AGG | 0.282118 | 4_3:-53663105 | Msa0647600:CDS |
| GACCCAATCATTCGCGGTTT+GGG | 0.306388 | 4_3:+53663472 | None:intergenic |
| ACATTGCATCAAACAAGTTT+TGG | 0.313565 | 4_3:+53663063 | None:intergenic |
| ATGCCCAAACCGCGAATGAT+TGG | 0.320348 | 4_3:-53663475 | Msa0647600:CDS |
| ATATCTTCAGCAAACTTAAA+AGG | 0.322049 | 4_3:-53663326 | Msa0647600:CDS |
| ACAGGTCCATTAGGCCTCTT+AGG | 0.322315 | 4_3:+53662882 | None:intergenic |
| TCAACCACTGCTTGCTTTGT+TGG | 0.330339 | 4_3:+53663629 | None:intergenic |
| TGACCCAATCATTCGCGGTT+TGG | 0.335785 | 4_3:+53663471 | None:intergenic |
| TTGATATTTAGGTGATTTAT+CGG | 0.339757 | 4_3:+53662779 | None:intergenic |
| GGTGTTTGTTATGGAGGAAA+TGG | 0.377147 | 4_3:-53663662 | Msa0647600:CDS |
| GTTGATTTATACAAATCAAA+AGG | 0.397564 | 4_3:-53663611 | Msa0647600:CDS |
| GGTATACTCCAAGCCCTTAG+AGG | 0.397868 | 4_3:-53663554 | Msa0647600:CDS |
| AGTCAAGACCAATGCTTTGT+TGG | 0.399487 | 4_3:+53663126 | None:intergenic |
| CAATCGGTAGGTGTTTGTTA+TGG | 0.400923 | 4_3:-53663671 | Msa0647600:CDS |
| AATATATCATCATTATTCAT+TGG | 0.405323 | 4_3:+53662609 | None:intergenic |
| TGGCCATCTCAAGGTGGAAC+TGG | 0.422776 | 4_3:-53662969 | Msa0647600:CDS |
| GCTTGGAGTATACCTTGGTC+TGG | 0.424488 | 4_3:+53663563 | None:intergenic |
| GAAATGCACAAACATATTAT+GGG | 0.431940 | 4_3:-53662935 | Msa0647600:CDS |
| GTGATTTGAGAACGTCGTTT+GGG | 0.436818 | 4_3:+53663504 | None:intergenic |
| CGTTGGCAATGAAGTTCACC+CGG | 0.444848 | 4_3:-53663402 | Msa0647600:CDS |
| GGGAAGAACTGAACTTGATT+CGG | 0.444899 | 4_3:+53663373 | None:intergenic |
| TGCCCAAACCGCGAATGATT+GGG | 0.449291 | 4_3:-53663474 | Msa0647600:CDS |
| TGTTTGAACCTCTAAGGGCT+TGG | 0.453566 | 4_3:+53663546 | None:intergenic |
| ATGCTGCTCTTGAGAAAGTA+GGG | 0.454697 | 4_3:-53663028 | Msa0647600:CDS |
| TATTAACATATGAGAAATAA+GGG | 0.456534 | 4_3:+53663150 | None:intergenic |
| GGAACTCCTAAGAGGCCTAA+TGG | 0.466080 | 4_3:-53662888 | Msa0647600:CDS |
| TTCTATGTTTGAACCTCTAA+GGG | 0.466463 | 4_3:+53663541 | None:intergenic |
| TATGCTGCTCTTGAGAAAGT+AGG | 0.478615 | 4_3:-53663029 | Msa0647600:CDS |
| AAACTTGTTTGATGCAATGT+TGG | 0.480831 | 4_3:-53663060 | Msa0647600:CDS |
| TTATACAAATCAAAAGGGAT+TGG | 0.486643 | 4_3:-53663605 | Msa0647600:CDS |
| GAACTTGATTCGGCTGAACC+CGG | 0.487280 | 4_3:+53663383 | None:intergenic |
| TGATATTTAGGTGATTTATC+GGG | 0.487557 | 4_3:+53662780 | None:intergenic |
| AGTGATTTGAGAACGTCGTT+TGG | 0.488685 | 4_3:+53663503 | None:intergenic |
| GAATTTGATTAAACATGCTA+AGG | 0.491457 | 4_3:-53662913 | Msa0647600:CDS |
| TGTCTATGCAGGTGCACAAT+CGG | 0.493575 | 4_3:-53663687 | Msa0647600:intron |
| TCTGAAATTGAGCGACACTT+TGG | 0.496250 | 4_3:-53662813 | Msa0647600:CDS |
| TAAGTCTCAACAGGTCCATT+AGG | 0.501442 | 4_3:+53662873 | None:intergenic |
| AAGATTGTTGTGTCTGAGAG+TGG | 0.504963 | 4_3:-53662993 | Msa0647600:CDS |
| TTGATTTATACAAATCAAAA+GGG | 0.517479 | 4_3:-53663610 | Msa0647600:CDS |
| CTTGCAATAGACAATAAGTA+AGG | 0.524312 | 4_3:-53662675 | Msa0647600:three_prime_UTR |
| AAACAGGGAAAGAATGAAGT+TGG | 0.526840 | 4_3:-53663089 | Msa0647600:CDS |
| GTTAATAACCAACAAAGCAT+TGG | 0.527284 | 4_3:-53663134 | Msa0647600:CDS |
| ACGCTGCAAGTGGTTACATA+AGG | 0.532172 | 4_3:-53663226 | Msa0647600:CDS |
| GAGAGTGGGTGGCCATCTCA+AGG | 0.533168 | 4_3:-53662978 | Msa0647600:CDS |
| AACTTGATTCGGCTGAACCC+GGG | 0.540222 | 4_3:+53663384 | None:intergenic |
| GTTCGATGAAAATCAGAAGC+CGG | 0.543224 | 4_3:-53662838 | Msa0647600:CDS |
| TTCGATGAAAATCAGAAGCC+GGG | 0.543831 | 4_3:-53662837 | Msa0647600:CDS |
| TCAAACATAGAAGTAATCCT+TGG | 0.548004 | 4_3:-53663530 | Msa0647600:CDS |
| TATGAGAGACATGGCTGTGT+TGG | 0.553360 | 4_3:+53663852 | None:intergenic |
| TAAGGGCTTGGAGTATACCT+TGG | 0.555442 | 4_3:+53663558 | None:intergenic |
| ACCCGAAAATTCTAATGCAG+TGG | 0.556984 | 4_3:+53663801 | None:intergenic |
| TTTGTTGACCCAATCATTCG+CGG | 0.557249 | 4_3:+53663466 | None:intergenic |
| TCGGTAGGTGTTTGTTATGG+AGG | 0.557386 | 4_3:-53663668 | Msa0647600:CDS |
| CTTGGTCTGGATTGTATATG+CGG | 0.569910 | 4_3:+53663576 | None:intergenic |
| GGTGGAACTGGAGCTAGTGT+TGG | 0.573408 | 4_3:-53662957 | Msa0647600:CDS |
| TGTCGCTCAATTTCAGAACC+CGG | 0.574035 | 4_3:+53662819 | None:intergenic |
| AGATTGTTGTGTCTGAGAGT+GGG | 0.578374 | 4_3:-53662992 | Msa0647600:CDS |
| CTAAGGGTGGAACTCCTAAG+AGG | 0.578551 | 4_3:-53662896 | Msa0647600:CDS |
| AAAATCAAATACATTGCCGT+TGG | 0.579389 | 4_3:-53663419 | Msa0647600:CDS |
| TATGCTTTGTTTACAAAACA+GGG | 0.582822 | 4_3:-53663104 | Msa0647600:CDS |
| TTGATTAAACATGCTAAGGG+TGG | 0.585401 | 4_3:-53662909 | Msa0647600:CDS |
| AATTTGATTAAACATGCTAA+GGG | 0.592000 | 4_3:-53662912 | Msa0647600:CDS |
| GCTCCAGTTCCACCTTGAGA+TGG | 0.597438 | 4_3:+53662966 | None:intergenic |
| CGGGTGAACTTCATTGCCAA+CGG | 0.606827 | 4_3:+53663403 | None:intergenic |
| TGCTGCTCTTGAGAAAGTAG+GGG | 0.607774 | 4_3:-53663027 | Msa0647600:CDS |
| GGGTAGACGTTAGCAAGAAG+TGG | 0.621501 | 4_3:+53663170 | None:intergenic |
| TATGCAGGTGCACAATCGGT+AGG | 0.631284 | 4_3:-53663683 | Msa0647600:intron |
| CGCATATACAATCCAGACCA+AGG | 0.635364 | 4_3:-53663575 | Msa0647600:CDS |
| GTTGGCAATGAAGTTCACCC+GGG | 0.635487 | 4_3:-53663401 | Msa0647600:CDS |
| AATTAGTGTTGTGTCTATCG+CGG | 0.640664 | 4_3:+53663286 | None:intergenic |
| AAATCTTACCCACCAAAAGA+CGG | 0.644937 | 4_3:-53663260 | Msa0647600:CDS |
| GCTGCTCTTGAGAAAGTAGG+GGG | 0.653642 | 4_3:-53663026 | Msa0647600:CDS |
| AAGCAGCAATATGAGAGACA+TGG | 0.658822 | 4_3:+53663843 | None:intergenic |
| TCTACCAACAAAGCAAGCAG+TGG | 0.662167 | 4_3:-53663633 | Msa0647600:CDS |
| TTGTTGTGTCTGAGAGTGGG+TGG | 0.678415 | 4_3:-53662989 | Msa0647600:CDS |
| GAACGTCGTTTGGGACACCA+AGG | 0.683186 | 4_3:+53663513 | None:intergenic |
| AGTGGGTGGCCATCTCAAGG+TGG | 0.723367 | 4_3:-53662975 | Msa0647600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTTATACAAATCAAAA+GGG | - | chr4_3:53662884-53662903 | Msa0647600:CDS | 15.0% |
| !! | TATTAACATATGAGAAATAA+GGG | + | chr4_3:53663347-53663366 | None:intergenic | 15.0% |
| !! | TTATTAACATATGAGAAATA+AGG | + | chr4_3:53663348-53663367 | None:intergenic | 15.0% |
| !! | TTGAAACTAATTTGATATTT+AGG | + | chr4_3:53663729-53663748 | None:intergenic | 15.0% |
| !! | AATATATCATCATTATTCAT+TGG | + | chr4_3:53663888-53663907 | None:intergenic | 15.0% |
| !! | TTGATTTATACAAATCAAAA+GGG | - | chr4_3:53662884-53662903 | Msa0647600:CDS | 15.0% |
| !! | TATTAACATATGAGAAATAA+GGG | + | chr4_3:53663347-53663366 | None:intergenic | 15.0% |
| !! | TTATTAACATATGAGAAATA+AGG | + | chr4_3:53663348-53663367 | None:intergenic | 15.0% |
| !! | TTGAAACTAATTTGATATTT+AGG | + | chr4_3:53663729-53663748 | None:intergenic | 15.0% |
| !! | AATATATCATCATTATTCAT+TGG | + | chr4_3:53663888-53663907 | None:intergenic | 15.0% |
| !!! | GTTGATTTATACAAATCAAA+AGG | - | chr4_3:53662883-53662902 | Msa0647600:CDS | 20.0% |
| !! | CTAACTAAAAAGTTAACAAT+AGG | + | chr4_3:53663294-53663313 | None:intergenic | 20.0% |
| !! | AATTTGATTAAACATGCTAA+GGG | - | chr4_3:53663582-53663601 | Msa0647600:CDS | 20.0% |
| !! | TTGATATTTAGGTGATTTAT+CGG | + | chr4_3:53663718-53663737 | None:intergenic | 20.0% |
| !!! | GTTGATTTATACAAATCAAA+AGG | - | chr4_3:53662883-53662902 | Msa0647600:CDS | 20.0% |
| !! | CTAACTAAAAAGTTAACAAT+AGG | + | chr4_3:53663294-53663313 | None:intergenic | 20.0% |
| !! | AATTTGATTAAACATGCTAA+GGG | - | chr4_3:53663582-53663601 | Msa0647600:CDS | 20.0% |
| !! | TTGATATTTAGGTGATTTAT+CGG | + | chr4_3:53663718-53663737 | None:intergenic | 20.0% |
| ! | GTTAATATTAATGTCTATGC+AGG | - | chr4_3:53662796-53662815 | Msa0647600:CDS | 25.0% |
| ! | TTATACAAATCAAAAGGGAT+TGG | - | chr4_3:53662889-53662908 | Msa0647600:CDS | 25.0% |
| !! | TTTTTGAATGTTTTGCATTG+CGG | + | chr4_3:53663145-53663164 | None:intergenic | 25.0% |
| ! | ATATCTTCAGCAAACTTAAA+AGG | - | chr4_3:53663168-53663187 | Msa0647600:CDS | 25.0% |
| !!! | GTTAACTTTTTAGTTAGCAA+CGG | - | chr4_3:53663297-53663316 | Msa0647600:CDS | 25.0% |
| !!! | TATGCTTTGTTTACAAAACA+GGG | - | chr4_3:53663390-53663409 | Msa0647600:CDS | 25.0% |
| ! | GAAATGCACAAACATATTAT+GGG | - | chr4_3:53663559-53663578 | Msa0647600:CDS | 25.0% |
| ! | GAATTTGATTAAACATGCTA+AGG | - | chr4_3:53663581-53663600 | Msa0647600:CDS | 25.0% |
| ! | TGATATTTAGGTGATTTATC+GGG | + | chr4_3:53663717-53663736 | None:intergenic | 25.0% |
| ! | GTTAATATTAATGTCTATGC+AGG | - | chr4_3:53662796-53662815 | Msa0647600:CDS | 25.0% |
| ! | TTATACAAATCAAAAGGGAT+TGG | - | chr4_3:53662889-53662908 | Msa0647600:CDS | 25.0% |
| !! | TTTTTGAATGTTTTGCATTG+CGG | + | chr4_3:53663145-53663164 | None:intergenic | 25.0% |
| ! | ATATCTTCAGCAAACTTAAA+AGG | - | chr4_3:53663168-53663187 | Msa0647600:CDS | 25.0% |
| !!! | GTTAACTTTTTAGTTAGCAA+CGG | - | chr4_3:53663297-53663316 | Msa0647600:CDS | 25.0% |
| !!! | TATGCTTTGTTTACAAAACA+GGG | - | chr4_3:53663390-53663409 | Msa0647600:CDS | 25.0% |
| ! | GAAATGCACAAACATATTAT+GGG | - | chr4_3:53663559-53663578 | Msa0647600:CDS | 25.0% |
| ! | GAATTTGATTAAACATGCTA+AGG | - | chr4_3:53663581-53663600 | Msa0647600:CDS | 25.0% |
| ! | TGATATTTAGGTGATTTATC+GGG | + | chr4_3:53663717-53663736 | None:intergenic | 25.0% |
| ! | TTCCACTGCATTAGAATTTT+CGG | - | chr4_3:53662691-53662710 | Msa0647600:three_prime_UTR | 30.0% |
| TTCTATGTTTGAACCTCTAA+GGG | + | chr4_3:53662956-53662975 | None:intergenic | 30.0% | |
| TCAAACATAGAAGTAATCCT+TGG | - | chr4_3:53662964-53662983 | Msa0647600:CDS | 30.0% | |
| AAAATCAAATACATTGCCGT+TGG | - | chr4_3:53663075-53663094 | Msa0647600:CDS | 30.0% | |
| ! | TTTTGAATGTTTTGCATTGC+GGG | + | chr4_3:53663144-53663163 | None:intergenic | 30.0% |
| GTTAATAACCAACAAAGCAT+TGG | - | chr4_3:53663360-53663379 | Msa0647600:CDS | 30.0% | |
| !! | CTATGCTTTGTTTACAAAAC+AGG | - | chr4_3:53663389-53663408 | Msa0647600:CDS | 30.0% |
| ! | ACATTGCATCAAACAAGTTT+TGG | + | chr4_3:53663434-53663453 | None:intergenic | 30.0% |
| ! | AAACTTGTTTGATGCAATGT+TGG | - | chr4_3:53663434-53663453 | Msa0647600:CDS | 30.0% |
| GGAAATGCACAAACATATTA+TGG | - | chr4_3:53663558-53663577 | Msa0647600:CDS | 30.0% | |
| CTTGCAATAGACAATAAGTA+AGG | - | chr4_3:53663819-53663838 | Msa0647600:CDS | 30.0% | |
| ! | TTCCACTGCATTAGAATTTT+CGG | - | chr4_3:53662691-53662710 | Msa0647600:three_prime_UTR | 30.0% |
| TTCTATGTTTGAACCTCTAA+GGG | + | chr4_3:53662956-53662975 | None:intergenic | 30.0% | |
| TCAAACATAGAAGTAATCCT+TGG | - | chr4_3:53662964-53662983 | Msa0647600:CDS | 30.0% | |
| AAAATCAAATACATTGCCGT+TGG | - | chr4_3:53663075-53663094 | Msa0647600:CDS | 30.0% | |
| ! | TTTTGAATGTTTTGCATTGC+GGG | + | chr4_3:53663144-53663163 | None:intergenic | 30.0% |
| GTTAATAACCAACAAAGCAT+TGG | - | chr4_3:53663360-53663379 | Msa0647600:CDS | 30.0% | |
| !! | CTATGCTTTGTTTACAAAAC+AGG | - | chr4_3:53663389-53663408 | Msa0647600:CDS | 30.0% |
| ! | ACATTGCATCAAACAAGTTT+TGG | + | chr4_3:53663434-53663453 | None:intergenic | 30.0% |
| ! | AAACTTGTTTGATGCAATGT+TGG | - | chr4_3:53663434-53663453 | Msa0647600:CDS | 30.0% |
| GGAAATGCACAAACATATTA+TGG | - | chr4_3:53663558-53663577 | Msa0647600:CDS | 30.0% | |
| CTTGCAATAGACAATAAGTA+AGG | - | chr4_3:53663819-53663838 | Msa0647600:CDS | 30.0% | |
| ! | TCTCTCATATTGCTGCTTAT+TGG | - | chr4_3:53662656-53662675 | Msa0647600:three_prime_UTR | 35.0% |
| ! | TCCACTGCATTAGAATTTTC+GGG | - | chr4_3:53662692-53662711 | Msa0647600:three_prime_UTR | 35.0% |
| CTTCTATGTTTGAACCTCTA+AGG | + | chr4_3:53662957-53662976 | None:intergenic | 35.0% | |
| AATTAGTGTTGTGTCTATCG+CGG | + | chr4_3:53663211-53663230 | None:intergenic | 35.0% | |
| AAATCTTACCCACCAAAAGA+CGG | - | chr4_3:53663234-53663253 | Msa0647600:CDS | 35.0% | |
| ! | TAAAAACACCGTCTTTTGGT+GGG | + | chr4_3:53663245-53663264 | None:intergenic | 35.0% |
| AAACAGGGAAAGAATGAAGT+TGG | - | chr4_3:53663405-53663424 | Msa0647600:CDS | 35.0% | |
| TTGATTAAACATGCTAAGGG+TGG | - | chr4_3:53663585-53663604 | Msa0647600:CDS | 35.0% | |
| GCAAAAAGATAAGTCTCAAC+AGG | + | chr4_3:53663633-53663652 | None:intergenic | 35.0% | |
| ! | TCTCTCATATTGCTGCTTAT+TGG | - | chr4_3:53662656-53662675 | Msa0647600:three_prime_UTR | 35.0% |
| ! | TCCACTGCATTAGAATTTTC+GGG | - | chr4_3:53662692-53662711 | Msa0647600:three_prime_UTR | 35.0% |
| CTTCTATGTTTGAACCTCTA+AGG | + | chr4_3:53662957-53662976 | None:intergenic | 35.0% | |
| AATTAGTGTTGTGTCTATCG+CGG | + | chr4_3:53663211-53663230 | None:intergenic | 35.0% | |
| AAATCTTACCCACCAAAAGA+CGG | - | chr4_3:53663234-53663253 | Msa0647600:CDS | 35.0% | |
| ! | TAAAAACACCGTCTTTTGGT+GGG | + | chr4_3:53663245-53663264 | None:intergenic | 35.0% |
| AAACAGGGAAAGAATGAAGT+TGG | - | chr4_3:53663405-53663424 | Msa0647600:CDS | 35.0% | |
| TTGATTAAACATGCTAAGGG+TGG | - | chr4_3:53663585-53663604 | Msa0647600:CDS | 35.0% | |
| GCAAAAAGATAAGTCTCAAC+AGG | + | chr4_3:53663633-53663652 | None:intergenic | 35.0% | |
| AAGCAGCAATATGAGAGACA+TGG | + | chr4_3:53662654-53662673 | None:intergenic | 40.0% | |
| ACCCGAAAATTCTAATGCAG+TGG | + | chr4_3:53662696-53662715 | None:intergenic | 40.0% | |
| ! | CAATCGGTAGGTGTTTGTTA+TGG | - | chr4_3:53662823-53662842 | Msa0647600:CDS | 40.0% |
| !! | GGTGTTTGTTATGGAGGAAA+TGG | - | chr4_3:53662832-53662851 | Msa0647600:CDS | 40.0% |
| CTTGGTCTGGATTGTATATG+CGG | + | chr4_3:53662921-53662940 | None:intergenic | 40.0% | |
| GTGATTTGAGAACGTCGTTT+GGG | + | chr4_3:53662993-53663012 | None:intergenic | 40.0% | |
| AGTGATTTGAGAACGTCGTT+TGG | + | chr4_3:53662994-53663013 | None:intergenic | 40.0% | |
| TTTGTTGACCCAATCATTCG+CGG | + | chr4_3:53663031-53663050 | None:intergenic | 40.0% | |
| GGGAAGAACTGAACTTGATT+CGG | + | chr4_3:53663124-53663143 | None:intergenic | 40.0% | |
| TCGCGGTAGACACTTTAATT+TGG | + | chr4_3:53663194-53663213 | None:intergenic | 40.0% | |
| GCGATAGACACAACACTAAT+TGG | - | chr4_3:53663210-53663229 | Msa0647600:CDS | 40.0% | |
| ! | CTAAAAACACCGTCTTTTGG+TGG | + | chr4_3:53663246-53663265 | None:intergenic | 40.0% |
| ! | TCGCTAAAAACACCGTCTTT+TGG | + | chr4_3:53663249-53663268 | None:intergenic | 40.0% |
| AGTCAAGACCAATGCTTTGT+TGG | + | chr4_3:53663371-53663390 | None:intergenic | 40.0% | |
| TATGCTGCTCTTGAGAAAGT+AGG | - | chr4_3:53663465-53663484 | Msa0647600:CDS | 40.0% | |
| ATGCTGCTCTTGAGAAAGTA+GGG | - | chr4_3:53663466-53663485 | Msa0647600:CDS | 40.0% | |
| AAGATTGTTGTGTCTGAGAG+TGG | - | chr4_3:53663501-53663520 | Msa0647600:CDS | 40.0% | |
| AGATTGTTGTGTCTGAGAGT+GGG | - | chr4_3:53663502-53663521 | Msa0647600:CDS | 40.0% | |
| TAAGTCTCAACAGGTCCATT+AGG | + | chr4_3:53663624-53663643 | None:intergenic | 40.0% | |
| GTTCGATGAAAATCAGAAGC+CGG | - | chr4_3:53663656-53663675 | Msa0647600:CDS | 40.0% | |
| TTCGATGAAAATCAGAAGCC+GGG | - | chr4_3:53663657-53663676 | Msa0647600:CDS | 40.0% | |
| ! | TCTGAAATTGAGCGACACTT+TGG | - | chr4_3:53663681-53663700 | Msa0647600:intron | 40.0% |
| AAGCAGCAATATGAGAGACA+TGG | + | chr4_3:53662654-53662673 | None:intergenic | 40.0% | |
| ACCCGAAAATTCTAATGCAG+TGG | + | chr4_3:53662696-53662715 | None:intergenic | 40.0% | |
| ! | CAATCGGTAGGTGTTTGTTA+TGG | - | chr4_3:53662823-53662842 | Msa0647600:CDS | 40.0% |
| !! | GGTGTTTGTTATGGAGGAAA+TGG | - | chr4_3:53662832-53662851 | Msa0647600:CDS | 40.0% |
| CTTGGTCTGGATTGTATATG+CGG | + | chr4_3:53662921-53662940 | None:intergenic | 40.0% | |
| GTGATTTGAGAACGTCGTTT+GGG | + | chr4_3:53662993-53663012 | None:intergenic | 40.0% | |
| AGTGATTTGAGAACGTCGTT+TGG | + | chr4_3:53662994-53663013 | None:intergenic | 40.0% | |
| TTTGTTGACCCAATCATTCG+CGG | + | chr4_3:53663031-53663050 | None:intergenic | 40.0% | |
| GGGAAGAACTGAACTTGATT+CGG | + | chr4_3:53663124-53663143 | None:intergenic | 40.0% | |
| TCGCGGTAGACACTTTAATT+TGG | + | chr4_3:53663194-53663213 | None:intergenic | 40.0% | |
| GCGATAGACACAACACTAAT+TGG | - | chr4_3:53663210-53663229 | Msa0647600:CDS | 40.0% | |
| ! | CTAAAAACACCGTCTTTTGG+TGG | + | chr4_3:53663246-53663265 | None:intergenic | 40.0% |
| ! | TCGCTAAAAACACCGTCTTT+TGG | + | chr4_3:53663249-53663268 | None:intergenic | 40.0% |
| AGTCAAGACCAATGCTTTGT+TGG | + | chr4_3:53663371-53663390 | None:intergenic | 40.0% | |
| TATGCTGCTCTTGAGAAAGT+AGG | - | chr4_3:53663465-53663484 | Msa0647600:CDS | 40.0% | |
| ATGCTGCTCTTGAGAAAGTA+GGG | - | chr4_3:53663466-53663485 | Msa0647600:CDS | 40.0% | |
| AAGATTGTTGTGTCTGAGAG+TGG | - | chr4_3:53663501-53663520 | Msa0647600:CDS | 40.0% | |
| AGATTGTTGTGTCTGAGAGT+GGG | - | chr4_3:53663502-53663521 | Msa0647600:CDS | 40.0% | |
| TAAGTCTCAACAGGTCCATT+AGG | + | chr4_3:53663624-53663643 | None:intergenic | 40.0% | |
| GTTCGATGAAAATCAGAAGC+CGG | - | chr4_3:53663656-53663675 | Msa0647600:CDS | 40.0% | |
| TTCGATGAAAATCAGAAGCC+GGG | - | chr4_3:53663657-53663676 | Msa0647600:CDS | 40.0% | |
| ! | TCTGAAATTGAGCGACACTT+TGG | - | chr4_3:53663681-53663700 | Msa0647600:intron | 40.0% |
| TATGAGAGACATGGCTGTGT+TGG | + | chr4_3:53662645-53662664 | None:intergenic | 45.0% | |
| TGTCTATGCAGGTGCACAAT+CGG | - | chr4_3:53662807-53662826 | Msa0647600:CDS | 45.0% | |
| !! | TCGGTAGGTGTTTGTTATGG+AGG | - | chr4_3:53662826-53662845 | Msa0647600:CDS | 45.0% |
| TCTACCAACAAAGCAAGCAG+TGG | - | chr4_3:53662861-53662880 | Msa0647600:CDS | 45.0% | |
| TCAACCACTGCTTGCTTTGT+TGG | + | chr4_3:53662868-53662887 | None:intergenic | 45.0% | |
| CGCATATACAATCCAGACCA+AGG | - | chr4_3:53662919-53662938 | Msa0647600:CDS | 45.0% | |
| TAAGGGCTTGGAGTATACCT+TGG | + | chr4_3:53662939-53662958 | None:intergenic | 45.0% | |
| ! | TGTTTGAACCTCTAAGGGCT+TGG | + | chr4_3:53662951-53662970 | None:intergenic | 45.0% |
| ACGCTGCAAGTGGTTACATA+AGG | - | chr4_3:53663268-53663287 | Msa0647600:CDS | 45.0% | |
| TGCTGCTCTTGAGAAAGTAG+GGG | - | chr4_3:53663467-53663486 | Msa0647600:CDS | 45.0% | |
| TGTCGCTCAATTTCAGAACC+CGG | + | chr4_3:53663678-53663697 | None:intergenic | 45.0% | |
| TATGAGAGACATGGCTGTGT+TGG | + | chr4_3:53662645-53662664 | None:intergenic | 45.0% | |
| TGTCTATGCAGGTGCACAAT+CGG | - | chr4_3:53662807-53662826 | Msa0647600:CDS | 45.0% | |
| !! | TCGGTAGGTGTTTGTTATGG+AGG | - | chr4_3:53662826-53662845 | Msa0647600:CDS | 45.0% |
| TCTACCAACAAAGCAAGCAG+TGG | - | chr4_3:53662861-53662880 | Msa0647600:CDS | 45.0% | |
| TCAACCACTGCTTGCTTTGT+TGG | + | chr4_3:53662868-53662887 | None:intergenic | 45.0% | |
| CGCATATACAATCCAGACCA+AGG | - | chr4_3:53662919-53662938 | Msa0647600:CDS | 45.0% | |
| TAAGGGCTTGGAGTATACCT+TGG | + | chr4_3:53662939-53662958 | None:intergenic | 45.0% | |
| ! | TGTTTGAACCTCTAAGGGCT+TGG | + | chr4_3:53662951-53662970 | None:intergenic | 45.0% |
| ACGCTGCAAGTGGTTACATA+AGG | - | chr4_3:53663268-53663287 | Msa0647600:CDS | 45.0% | |
| TGCTGCTCTTGAGAAAGTAG+GGG | - | chr4_3:53663467-53663486 | Msa0647600:CDS | 45.0% | |
| TGTCGCTCAATTTCAGAACC+CGG | + | chr4_3:53663678-53663697 | None:intergenic | 45.0% | |
| TATGCAGGTGCACAATCGGT+AGG | - | chr4_3:53662811-53662830 | Msa0647600:CDS | 50.0% | |
| GCTTGGAGTATACCTTGGTC+TGG | + | chr4_3:53662934-53662953 | None:intergenic | 50.0% | |
| GGTATACTCCAAGCCCTTAG+AGG | - | chr4_3:53662940-53662959 | Msa0647600:CDS | 50.0% | |
| ATGCCCAAACCGCGAATGAT+TGG | - | chr4_3:53663019-53663038 | Msa0647600:CDS | 50.0% | |
| TGCCCAAACCGCGAATGATT+GGG | - | chr4_3:53663020-53663039 | Msa0647600:CDS | 50.0% | |
| GACCCAATCATTCGCGGTTT+GGG | + | chr4_3:53663025-53663044 | None:intergenic | 50.0% | |
| TGACCCAATCATTCGCGGTT+TGG | + | chr4_3:53663026-53663045 | None:intergenic | 50.0% | |
| CGGGTGAACTTCATTGCCAA+CGG | + | chr4_3:53663094-53663113 | None:intergenic | 50.0% | |
| CGTTGGCAATGAAGTTCACC+CGG | - | chr4_3:53663092-53663111 | Msa0647600:CDS | 50.0% | |
| GTTGGCAATGAAGTTCACCC+GGG | - | chr4_3:53663093-53663112 | Msa0647600:CDS | 50.0% | |
| !! | AACTTGATTCGGCTGAACCC+GGG | + | chr4_3:53663113-53663132 | None:intergenic | 50.0% |
| !! | GAACTTGATTCGGCTGAACC+CGG | + | chr4_3:53663114-53663133 | None:intergenic | 50.0% |
| !!! | GTTTTTAGCGACGCTGCAAG+TGG | - | chr4_3:53663258-53663277 | Msa0647600:CDS | 50.0% |
| GGGTAGACGTTAGCAAGAAG+TGG | + | chr4_3:53663327-53663346 | None:intergenic | 50.0% | |
| GCTGCTCTTGAGAAAGTAGG+GGG | - | chr4_3:53663468-53663487 | Msa0647600:CDS | 50.0% | |
| TTGTTGTGTCTGAGAGTGGG+TGG | - | chr4_3:53663505-53663524 | Msa0647600:CDS | 50.0% | |
| CTAAGGGTGGAACTCCTAAG+AGG | - | chr4_3:53663598-53663617 | Msa0647600:CDS | 50.0% | |
| GGAACTCCTAAGAGGCCTAA+TGG | - | chr4_3:53663606-53663625 | Msa0647600:CDS | 50.0% | |
| ACAGGTCCATTAGGCCTCTT+AGG | + | chr4_3:53663615-53663634 | None:intergenic | 50.0% | |
| TATGCAGGTGCACAATCGGT+AGG | - | chr4_3:53662811-53662830 | Msa0647600:CDS | 50.0% | |
| GCTTGGAGTATACCTTGGTC+TGG | + | chr4_3:53662934-53662953 | None:intergenic | 50.0% | |
| GGTATACTCCAAGCCCTTAG+AGG | - | chr4_3:53662940-53662959 | Msa0647600:CDS | 50.0% | |
| ATGCCCAAACCGCGAATGAT+TGG | - | chr4_3:53663019-53663038 | Msa0647600:CDS | 50.0% | |
| TGCCCAAACCGCGAATGATT+GGG | - | chr4_3:53663020-53663039 | Msa0647600:CDS | 50.0% | |
| GACCCAATCATTCGCGGTTT+GGG | + | chr4_3:53663025-53663044 | None:intergenic | 50.0% | |
| TGACCCAATCATTCGCGGTT+TGG | + | chr4_3:53663026-53663045 | None:intergenic | 50.0% | |
| CGGGTGAACTTCATTGCCAA+CGG | + | chr4_3:53663094-53663113 | None:intergenic | 50.0% | |
| CGTTGGCAATGAAGTTCACC+CGG | - | chr4_3:53663092-53663111 | Msa0647600:CDS | 50.0% | |
| GTTGGCAATGAAGTTCACCC+GGG | - | chr4_3:53663093-53663112 | Msa0647600:CDS | 50.0% | |
| !! | AACTTGATTCGGCTGAACCC+GGG | + | chr4_3:53663113-53663132 | None:intergenic | 50.0% |
| !! | GAACTTGATTCGGCTGAACC+CGG | + | chr4_3:53663114-53663133 | None:intergenic | 50.0% |
| !!! | GTTTTTAGCGACGCTGCAAG+TGG | - | chr4_3:53663258-53663277 | Msa0647600:CDS | 50.0% |
| GGGTAGACGTTAGCAAGAAG+TGG | + | chr4_3:53663327-53663346 | None:intergenic | 50.0% | |
| GCTGCTCTTGAGAAAGTAGG+GGG | - | chr4_3:53663468-53663487 | Msa0647600:CDS | 50.0% | |
| TTGTTGTGTCTGAGAGTGGG+TGG | - | chr4_3:53663505-53663524 | Msa0647600:CDS | 50.0% | |
| CTAAGGGTGGAACTCCTAAG+AGG | - | chr4_3:53663598-53663617 | Msa0647600:CDS | 50.0% | |
| GGAACTCCTAAGAGGCCTAA+TGG | - | chr4_3:53663606-53663625 | Msa0647600:CDS | 50.0% | |
| ACAGGTCCATTAGGCCTCTT+AGG | + | chr4_3:53663615-53663634 | None:intergenic | 50.0% | |
| ! | GAACGTCGTTTGGGACACCA+AGG | + | chr4_3:53662984-53663003 | None:intergenic | 55.0% |
| TGGCCATCTCAAGGTGGAAC+TGG | - | chr4_3:53663525-53663544 | Msa0647600:CDS | 55.0% | |
| GCTCCAGTTCCACCTTGAGA+TGG | + | chr4_3:53663531-53663550 | None:intergenic | 55.0% | |
| GGTGGAACTGGAGCTAGTGT+TGG | - | chr4_3:53663537-53663556 | Msa0647600:CDS | 55.0% | |
| ! | GAACGTCGTTTGGGACACCA+AGG | + | chr4_3:53662984-53663003 | None:intergenic | 55.0% |
| TGGCCATCTCAAGGTGGAAC+TGG | - | chr4_3:53663525-53663544 | Msa0647600:CDS | 55.0% | |
| GCTCCAGTTCCACCTTGAGA+TGG | + | chr4_3:53663531-53663550 | None:intergenic | 55.0% | |
| GGTGGAACTGGAGCTAGTGT+TGG | - | chr4_3:53663537-53663556 | Msa0647600:CDS | 55.0% | |
| GAGAGTGGGTGGCCATCTCA+AGG | - | chr4_3:53663516-53663535 | Msa0647600:CDS | 60.0% | |
| AGTGGGTGGCCATCTCAAGG+TGG | - | chr4_3:53663519-53663538 | Msa0647600:CDS | 60.0% | |
| GAGAGTGGGTGGCCATCTCA+AGG | - | chr4_3:53663516-53663535 | Msa0647600:CDS | 60.0% | |
| AGTGGGTGGCCATCTCAAGG+TGG | - | chr4_3:53663519-53663538 | Msa0647600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53662600 | 53663916 | 53662600 | ID=Msa0647600;Name=Msa0647600 |
| chr4_3 | mRNA | 53662600 | 53663916 | 53662600 | ID=Msa0647600-mRNA-1;Parent=Msa0647600;Name=Msa0647600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=53|1|1|1|1|1|2|164|331 |
| chr4_3 | exon | 53662600 | 53663698 | 53662600 | ID=Msa0647600-mRNA-1:exon:13472;Parent=Msa0647600-mRNA-1 |
| chr4_3 | exon | 53663803 | 53663916 | 53663803 | ID=Msa0647600-mRNA-1:exon:13471;Parent=Msa0647600-mRNA-1 |
| chr4_3 | five_prime_UTR | 53663864 | 53663916 | 53663864 | ID=Msa0647600-mRNA-1:five_prime_utr;Parent=Msa0647600-mRNA-1 |
| chr4_3 | CDS | 53663803 | 53663863 | 53663803 | ID=Msa0647600-mRNA-1:cds;Parent=Msa0647600-mRNA-1 |
| chr4_3 | CDS | 53662764 | 53663698 | 53662764 | ID=Msa0647600-mRNA-1:cds;Parent=Msa0647600-mRNA-1 |
| chr4_3 | three_prime_UTR | 53662600 | 53662763 | 53662600 | ID=Msa0647600-mRNA-1:three_prime_utr;Parent=Msa0647600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
