Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690380 | XP_013456593.2 | 95.268 | 317 | 15 | 0 | 15 | 331 | 42 | 358 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690380 | sp|P23547|E13G_TOBAC | 54.464 | 336 | 146 | 4 | 1 | 331 | 10 | 343 | 1.35e-126 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690380 | A0A396I7P7 | 95.268 | 317 | 15 | 0 | 15 | 331 | 42 | 358 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607350 | Msa0690380 | 0.992348 | 9.375166e-193 | -8.615850e-47 |
| Msa0647600 | Msa0690380 | 0.803728 | 3.034440e-49 | -8.615850e-47 |
| Msa0690380 | Msa0916590 | 0.801042 | 1.084964e-48 | -8.615850e-47 |
| Msa0190640 | Msa0690380 | 0.801886 | 7.287884e-49 | -8.615850e-47 |
| Msa0232910 | Msa0690380 | 0.802062 | 6.705952e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690380 | MtrunA17_Chr4g0038941 | 95.268 | 317 | 15 | 0 | 15 | 331 | 42 | 358 | 0.0 | 615 |
| Msa0690380 | MtrunA17_Chr4g0039011 | 67.622 | 349 | 95 | 3 | 1 | 331 | 1 | 349 | 1.51e-168 | 473 |
| Msa0690380 | MtrunA17_Chr4g0038961 | 70.181 | 332 | 95 | 3 | 1 | 331 | 1 | 329 | 9.69e-167 | 467 |
| Msa0690380 | MtrunA17_Chr4g0038971 | 68.373 | 332 | 101 | 3 | 1 | 331 | 1 | 329 | 2.40e-166 | 466 |
| Msa0690380 | MtrunA17_Chr4g0038981 | 69.578 | 332 | 97 | 3 | 1 | 331 | 1 | 329 | 2.61e-165 | 463 |
| Msa0690380 | MtrunA17_Chr4g0039071 | 58.147 | 313 | 124 | 4 | 23 | 328 | 23 | 335 | 6.30e-126 | 365 |
| Msa0690380 | MtrunA17_Chr1g0174261 | 61.053 | 285 | 100 | 5 | 54 | 329 | 1 | 283 | 7.61e-116 | 338 |
| Msa0690380 | MtrunA17_Chr4g0039021 | 58.703 | 293 | 115 | 5 | 45 | 331 | 1 | 293 | 1.38e-113 | 331 |
| Msa0690380 | MtrunA17_Chr2g0294591 | 53.870 | 323 | 137 | 8 | 17 | 330 | 23 | 342 | 8.05e-110 | 324 |
| Msa0690380 | MtrunA17_Chr2g0294601 | 52.836 | 335 | 145 | 7 | 5 | 330 | 41 | 371 | 2.41e-109 | 323 |
| Msa0690380 | MtrunA17_Chr7g0250301 | 43.396 | 318 | 169 | 8 | 19 | 328 | 2 | 316 | 3.59e-82 | 252 |
| Msa0690380 | MtrunA17_Chr5g0439251 | 41.486 | 323 | 173 | 8 | 24 | 331 | 24 | 345 | 2.10e-75 | 239 |
| Msa0690380 | MtrunA17_Chr3g0119541 | 42.462 | 325 | 167 | 8 | 24 | 331 | 25 | 346 | 2.78e-75 | 236 |
| Msa0690380 | MtrunA17_Chr8g0389741 | 38.199 | 322 | 182 | 7 | 25 | 331 | 28 | 347 | 3.55e-75 | 239 |
| Msa0690380 | MtrunA17_Chr1g0189111 | 39.815 | 324 | 183 | 6 | 20 | 331 | 26 | 349 | 3.68e-72 | 229 |
| Msa0690380 | MtrunA17_Chr6g0487261 | 35.277 | 343 | 200 | 7 | 2 | 331 | 13 | 346 | 3.21e-71 | 229 |
| Msa0690380 | MtrunA17_Chr4g0026321 | 38.871 | 319 | 180 | 6 | 24 | 328 | 28 | 345 | 1.25e-70 | 224 |
| Msa0690380 | MtrunA17_Chr4g0043851 | 38.372 | 344 | 199 | 6 | 1 | 331 | 8 | 351 | 4.10e-70 | 223 |
| Msa0690380 | MtrunA17_Chr1g0177171 | 39.319 | 323 | 180 | 8 | 24 | 331 | 37 | 358 | 8.19e-70 | 225 |
| Msa0690380 | MtrunA17_Chr1g0146831 | 39.403 | 335 | 182 | 9 | 8 | 327 | 16 | 344 | 8.47e-70 | 222 |
| Msa0690380 | MtrunA17_Chr4g0034901 | 39.053 | 338 | 191 | 8 | 6 | 328 | 9 | 346 | 1.90e-69 | 223 |
| Msa0690380 | MtrunA17_Chr4g0003281 | 37.318 | 343 | 201 | 6 | 3 | 331 | 18 | 360 | 4.97e-69 | 221 |
| Msa0690380 | MtrunA17_Chr4g0046311 | 36.890 | 328 | 186 | 8 | 24 | 331 | 22 | 348 | 2.72e-68 | 221 |
| Msa0690380 | MtrunA17_Chr3g0144531 | 38.192 | 343 | 193 | 9 | 6 | 331 | 8 | 348 | 9.10e-68 | 219 |
| Msa0690380 | MtrunA17_Chr2g0321511 | 35.882 | 340 | 195 | 9 | 3 | 328 | 13 | 343 | 1.61e-67 | 216 |
| Msa0690380 | MtrunA17_Chr1g0161011 | 38.218 | 348 | 196 | 8 | 1 | 331 | 1 | 346 | 1.60e-66 | 217 |
| Msa0690380 | MtrunA17_Chr4g0064021 | 37.072 | 321 | 188 | 7 | 24 | 330 | 25 | 345 | 8.80e-66 | 212 |
| Msa0690380 | MtrunA17_Chr3g0110371 | 38.080 | 323 | 184 | 6 | 25 | 331 | 24 | 346 | 3.47e-65 | 213 |
| Msa0690380 | MtrunA17_Chr2g0285901 | 38.906 | 329 | 183 | 8 | 17 | 328 | 12 | 339 | 4.78e-64 | 207 |
| Msa0690380 | MtrunA17_Chr7g0223961 | 39.252 | 321 | 176 | 11 | 20 | 326 | 18 | 333 | 1.32e-63 | 208 |
| Msa0690380 | MtrunA17_Chr7g0250321 | 41.901 | 284 | 154 | 7 | 2 | 279 | 8 | 286 | 6.93e-63 | 201 |
| Msa0690380 | MtrunA17_Chr7g0234821 | 36.111 | 324 | 188 | 8 | 26 | 331 | 27 | 349 | 3.00e-62 | 205 |
| Msa0690380 | MtrunA17_Chr8g0339191 | 35.714 | 350 | 198 | 11 | 3 | 331 | 9 | 352 | 2.07e-61 | 202 |
| Msa0690380 | MtrunA17_Chr8g0383311 | 37.920 | 327 | 183 | 10 | 22 | 331 | 40 | 363 | 2.13e-61 | 203 |
| Msa0690380 | MtrunA17_Chr1g0155001 | 36.728 | 324 | 186 | 8 | 25 | 331 | 24 | 345 | 3.28e-61 | 201 |
| Msa0690380 | MtrunA17_Chr5g0434591 | 35.530 | 349 | 201 | 9 | 1 | 331 | 3 | 345 | 1.10e-60 | 201 |
| Msa0690380 | MtrunA17_Chr3g0138741 | 37.758 | 339 | 187 | 13 | 11 | 330 | 17 | 350 | 1.71e-58 | 196 |
| Msa0690380 | MtrunA17_Chr7g0253091 | 35.632 | 348 | 195 | 12 | 4 | 331 | 9 | 347 | 1.87e-57 | 192 |
| Msa0690380 | MtrunA17_Chr8g0378621 | 34.104 | 346 | 207 | 8 | 1 | 330 | 7 | 347 | 1.38e-55 | 188 |
| Msa0690380 | MtrunA17_Chr3g0129341 | 37.536 | 349 | 188 | 15 | 3 | 331 | 14 | 352 | 1.41e-55 | 188 |
| Msa0690380 | MtrunA17_Chr1g0148391 | 36.919 | 344 | 192 | 14 | 4 | 329 | 8 | 344 | 1.30e-54 | 185 |
| Msa0690380 | MtrunA17_Chr2g0290821 | 37.003 | 327 | 182 | 11 | 24 | 330 | 27 | 349 | 1.64e-54 | 185 |
| Msa0690380 | MtrunA17_Chr3g0121271 | 33.642 | 324 | 198 | 7 | 25 | 331 | 26 | 349 | 4.05e-54 | 184 |
| Msa0690380 | MtrunA17_Chr4g0062771 | 33.239 | 355 | 197 | 13 | 1 | 329 | 11 | 351 | 1.89e-53 | 182 |
| Msa0690380 | MtrunA17_Chr4g0075031 | 34.154 | 325 | 194 | 7 | 25 | 331 | 45 | 367 | 1.59e-52 | 181 |
| Msa0690380 | MtrunA17_Chr6g0461601 | 34.006 | 347 | 201 | 11 | 6 | 331 | 10 | 349 | 3.45e-52 | 179 |
| Msa0690380 | MtrunA17_Chr4g0043511 | 37.304 | 319 | 182 | 10 | 25 | 328 | 62 | 377 | 5.32e-52 | 180 |
| Msa0690380 | MtrunA17_Chr2g0306311 | 32.979 | 376 | 191 | 16 | 2 | 329 | 14 | 376 | 3.41e-50 | 174 |
| Msa0690380 | MtrunA17_Chr4g0069801 | 35.065 | 308 | 180 | 10 | 40 | 330 | 43 | 347 | 7.47e-50 | 173 |
| Msa0690380 | MtrunA17_Chr4g0076581 | 35.583 | 326 | 186 | 11 | 24 | 330 | 32 | 352 | 1.66e-49 | 172 |
| Msa0690380 | MtrunA17_Chr3g0105981 | 32.931 | 331 | 190 | 12 | 20 | 328 | 22 | 342 | 1.03e-47 | 166 |
| Msa0690380 | MtrunA17_Chr4g0018861 | 68.182 | 88 | 28 | 0 | 242 | 329 | 87 | 174 | 1.82e-36 | 130 |
| Msa0690380 | MtrunA17_Chr4g0018861 | 46.667 | 90 | 45 | 1 | 1 | 90 | 1 | 87 | 6.32e-21 | 89.4 |
| Msa0690380 | MtrunA17_Chr5g0436361 | 32.776 | 299 | 176 | 13 | 51 | 331 | 63 | 354 | 4.53e-36 | 134 |
| Msa0690380 | MtrunA17_Chr2g0294581 | 44.086 | 186 | 87 | 8 | 14 | 191 | 66 | 242 | 2.12e-35 | 130 |
| Msa0690380 | MtrunA17_Chr2g0294581 | 53.000 | 100 | 43 | 4 | 233 | 330 | 187 | 284 | 9.70e-26 | 103 |
| Msa0690380 | MtrunA17_Chr4g0018771 | 62.637 | 91 | 34 | 0 | 239 | 329 | 86 | 176 | 7.42e-35 | 126 |
| Msa0690380 | MtrunA17_Chr4g0018771 | 56.338 | 71 | 31 | 0 | 23 | 93 | 24 | 94 | 1.83e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690380 | AT4G16260.1 | 52.663 | 338 | 150 | 6 | 1 | 331 | 1 | 335 | 3.53e-117 | 342 |
| Msa0690380 | AT3G57270.1 | 53.035 | 313 | 140 | 4 | 25 | 330 | 27 | 339 | 6.77e-112 | 328 |
| Msa0690380 | AT4G16260.2 | 53.595 | 306 | 133 | 5 | 33 | 331 | 3 | 306 | 1.03e-108 | 320 |
| Msa0690380 | AT3G57240.1 | 51.411 | 319 | 141 | 5 | 20 | 331 | 30 | 341 | 2.53e-108 | 320 |
| Msa0690380 | AT3G57260.1 | 49.702 | 336 | 152 | 8 | 1 | 330 | 14 | 338 | 3.54e-102 | 304 |
| Msa0690380 | AT3G57260.2 | 49.702 | 336 | 152 | 8 | 1 | 330 | 30 | 354 | 5.38e-102 | 304 |
| Msa0690380 | AT2G05790.1 | 41.615 | 322 | 174 | 7 | 24 | 331 | 24 | 345 | 3.08e-75 | 239 |
| Msa0690380 | AT4G26830.1 | 40.938 | 320 | 176 | 6 | 25 | 331 | 25 | 344 | 4.59e-74 | 236 |
| Msa0690380 | AT4G26830.2 | 40.938 | 320 | 176 | 6 | 25 | 331 | 29 | 348 | 6.11e-74 | 235 |
| Msa0690380 | AT5G56590.1 | 37.267 | 322 | 187 | 6 | 25 | 331 | 26 | 347 | 9.27e-74 | 236 |
| Msa0690380 | AT2G01630.2 | 41.176 | 323 | 174 | 6 | 25 | 331 | 23 | 345 | 9.38e-74 | 233 |
| Msa0690380 | AT2G01630.3 | 41.176 | 323 | 174 | 6 | 25 | 331 | 23 | 345 | 4.56e-73 | 233 |
| Msa0690380 | AT3G15800.1 | 38.576 | 337 | 190 | 7 | 10 | 331 | 30 | 364 | 6.01e-73 | 231 |
| Msa0690380 | AT2G01630.1 | 41.176 | 323 | 174 | 6 | 25 | 331 | 23 | 345 | 4.31e-72 | 232 |
| Msa0690380 | AT5G42100.2 | 41.358 | 324 | 174 | 7 | 21 | 328 | 23 | 346 | 5.02e-72 | 229 |
| Msa0690380 | AT5G55180.2 | 39.193 | 347 | 195 | 8 | 1 | 331 | 1 | 347 | 5.27e-72 | 231 |
| Msa0690380 | AT5G42100.1 | 41.358 | 324 | 174 | 7 | 21 | 328 | 23 | 346 | 9.55e-72 | 229 |
| Msa0690380 | AT5G55180.1 | 39.193 | 347 | 195 | 8 | 1 | 331 | 1 | 347 | 1.00e-71 | 229 |
| Msa0690380 | AT5G20330.1 | 40.312 | 320 | 176 | 10 | 20 | 328 | 29 | 344 | 4.74e-71 | 224 |
| Msa0690380 | AT4G18340.2 | 37.830 | 341 | 197 | 7 | 4 | 331 | 15 | 353 | 7.28e-71 | 225 |
| Msa0690380 | AT4G18340.1 | 37.830 | 341 | 197 | 7 | 4 | 331 | 15 | 353 | 8.72e-71 | 225 |
| Msa0690380 | AT1G77780.1 | 40.446 | 314 | 170 | 9 | 26 | 328 | 25 | 332 | 1.69e-70 | 224 |
| Msa0690380 | AT2G26600.1 | 35.629 | 334 | 197 | 7 | 15 | 330 | 20 | 353 | 1.28e-69 | 222 |
| Msa0690380 | AT2G16230.1 | 39.875 | 321 | 179 | 6 | 25 | 331 | 25 | 345 | 1.73e-69 | 225 |
| Msa0690380 | AT1G77790.1 | 37.168 | 339 | 197 | 9 | 1 | 328 | 8 | 341 | 2.19e-69 | 220 |
| Msa0690380 | AT4G29360.2 | 38.261 | 345 | 198 | 7 | 1 | 331 | 13 | 356 | 3.44e-69 | 225 |
| Msa0690380 | AT5G20340.1 | 41.456 | 316 | 170 | 10 | 24 | 328 | 42 | 353 | 3.97e-69 | 220 |
| Msa0690380 | AT1G30080.2 | 36.765 | 340 | 202 | 5 | 2 | 328 | 13 | 352 | 9.66e-68 | 217 |
| Msa0690380 | AT1G30080.1 | 36.765 | 340 | 202 | 5 | 2 | 328 | 13 | 352 | 1.09e-67 | 218 |
| Msa0690380 | AT4G29360.1 | 38.123 | 341 | 195 | 8 | 6 | 331 | 7 | 346 | 1.92e-67 | 221 |
| Msa0690380 | AT4G34480.2 | 38.776 | 343 | 191 | 7 | 3 | 331 | 9 | 346 | 2.04e-67 | 215 |
| Msa0690380 | AT1G33220.1 | 41.176 | 306 | 166 | 9 | 24 | 318 | 33 | 335 | 2.88e-67 | 214 |
| Msa0690380 | AT5G42720.1 | 38.150 | 346 | 193 | 9 | 2 | 331 | 7 | 347 | 2.28e-66 | 215 |
| Msa0690380 | AT5G20390.1 | 38.393 | 336 | 191 | 11 | 5 | 328 | 12 | 343 | 2.61e-66 | 212 |
| Msa0690380 | AT5G24318.4 | 38.596 | 342 | 184 | 11 | 4 | 328 | 12 | 344 | 5.60e-66 | 212 |
| Msa0690380 | AT1G32860.1 | 36.842 | 323 | 189 | 6 | 24 | 331 | 28 | 350 | 5.75e-66 | 214 |
| Msa0690380 | AT4G34480.1 | 38.776 | 343 | 191 | 7 | 3 | 331 | 9 | 346 | 1.09e-65 | 215 |
| Msa0690380 | AT2G27500.2 | 34.688 | 320 | 195 | 7 | 23 | 328 | 27 | 346 | 2.37e-65 | 211 |
| Msa0690380 | AT2G27500.1 | 34.688 | 320 | 195 | 7 | 23 | 328 | 27 | 346 | 2.77e-65 | 211 |
| Msa0690380 | AT5G24318.2 | 38.596 | 342 | 184 | 11 | 4 | 328 | 12 | 344 | 1.39e-64 | 211 |
| Msa0690380 | AT3G07320.1 | 36.420 | 324 | 187 | 8 | 26 | 331 | 26 | 348 | 2.08e-64 | 211 |
| Msa0690380 | AT5G24318.1 | 38.596 | 342 | 184 | 11 | 4 | 328 | 12 | 344 | 2.51e-64 | 210 |
| Msa0690380 | AT1G66250.1 | 39.009 | 323 | 180 | 7 | 25 | 331 | 32 | 353 | 2.92e-63 | 209 |
| Msa0690380 | AT5G20560.1 | 36.747 | 332 | 189 | 9 | 7 | 320 | 8 | 336 | 1.59e-62 | 202 |
| Msa0690380 | AT4G14080.1 | 35.952 | 331 | 188 | 10 | 21 | 331 | 38 | 364 | 1.70e-62 | 206 |
| Msa0690380 | AT3G61810.1 | 35.294 | 323 | 188 | 6 | 25 | 331 | 55 | 372 | 1.01e-60 | 199 |
| Msa0690380 | AT3G23770.1 | 35.952 | 331 | 191 | 8 | 21 | 331 | 33 | 362 | 2.23e-60 | 201 |
| Msa0690380 | AT3G13560.4 | 34.591 | 318 | 192 | 6 | 25 | 326 | 26 | 343 | 1.75e-55 | 188 |
| Msa0690380 | AT3G13560.1 | 34.591 | 318 | 192 | 6 | 25 | 326 | 26 | 343 | 1.75e-55 | 188 |
| Msa0690380 | AT3G13560.2 | 34.591 | 318 | 192 | 6 | 25 | 326 | 26 | 343 | 1.75e-55 | 188 |
| Msa0690380 | AT3G13560.5 | 34.591 | 318 | 192 | 6 | 25 | 326 | 26 | 343 | 1.75e-55 | 188 |
| Msa0690380 | AT3G13560.3 | 34.591 | 318 | 192 | 6 | 25 | 326 | 26 | 343 | 1.75e-55 | 188 |
| Msa0690380 | AT1G11820.1 | 32.923 | 325 | 198 | 7 | 25 | 331 | 44 | 366 | 2.65e-55 | 185 |
| Msa0690380 | AT5G58090.1 | 36.923 | 325 | 183 | 12 | 24 | 330 | 21 | 341 | 3.70e-55 | 187 |
| Msa0690380 | AT2G19440.2 | 35.277 | 343 | 200 | 12 | 7 | 331 | 3 | 341 | 5.82e-55 | 186 |
| Msa0690380 | AT2G19440.1 | 35.277 | 343 | 200 | 12 | 7 | 331 | 3 | 341 | 5.82e-55 | 186 |
| Msa0690380 | AT5G18220.1 | 35.168 | 327 | 190 | 11 | 22 | 331 | 27 | 348 | 3.88e-54 | 184 |
| Msa0690380 | AT1G11820.3 | 32.923 | 325 | 198 | 7 | 25 | 331 | 44 | 366 | 5.04e-54 | 184 |
| Msa0690380 | AT3G24330.1 | 34.682 | 346 | 206 | 10 | 4 | 331 | 18 | 361 | 6.94e-54 | 184 |
| Msa0690380 | AT4G31140.1 | 35.652 | 345 | 197 | 13 | 4 | 330 | 9 | 346 | 7.87e-54 | 184 |
| Msa0690380 | AT1G11820.2 | 32.923 | 325 | 198 | 7 | 25 | 331 | 44 | 366 | 1.13e-53 | 184 |
| Msa0690380 | AT5G58480.1 | 34.441 | 331 | 199 | 8 | 16 | 330 | 17 | 345 | 3.01e-53 | 182 |
| Msa0690380 | AT3G46570.1 | 36.686 | 338 | 186 | 12 | 11 | 328 | 13 | 342 | 3.50e-53 | 179 |
| Msa0690380 | AT2G27500.3 | 35.075 | 268 | 160 | 7 | 75 | 328 | 1 | 268 | 3.60e-53 | 177 |
| Msa0690380 | AT1G64760.1 | 35.061 | 328 | 193 | 10 | 21 | 331 | 21 | 345 | 4.24e-53 | 182 |
| Msa0690380 | AT1G64760.2 | 35.061 | 328 | 193 | 10 | 21 | 331 | 21 | 345 | 4.24e-53 | 182 |
| Msa0690380 | AT2G26600.2 | 35.798 | 257 | 152 | 5 | 87 | 330 | 3 | 259 | 1.14e-52 | 176 |
| Msa0690380 | AT3G04010.1 | 33.528 | 343 | 204 | 11 | 7 | 330 | 15 | 352 | 4.19e-52 | 179 |
| Msa0690380 | AT5G64790.1 | 33.621 | 348 | 205 | 12 | 4 | 331 | 7 | 348 | 1.50e-51 | 177 |
| Msa0690380 | AT3G55430.1 | 35.604 | 323 | 187 | 11 | 21 | 328 | 25 | 341 | 3.97e-51 | 176 |
| Msa0690380 | AT2G39640.1 | 32.941 | 340 | 205 | 11 | 1 | 328 | 10 | 338 | 1.48e-50 | 176 |
| Msa0690380 | AT4G34480.3 | 42.060 | 233 | 123 | 4 | 111 | 331 | 3 | 235 | 1.16e-48 | 168 |
| Msa0690380 | AT4G17180.1 | 32.653 | 343 | 206 | 11 | 3 | 330 | 7 | 339 | 6.90e-48 | 167 |
| Msa0690380 | AT5G20870.1 | 31.534 | 352 | 212 | 12 | 3 | 330 | 10 | 356 | 1.32e-43 | 157 |
| Msa0690380 | AT5G24318.3 | 40.000 | 210 | 109 | 6 | 131 | 328 | 1 | 205 | 3.02e-40 | 144 |
| Msa0690380 | AT3G55780.1 | 30.464 | 302 | 187 | 11 | 48 | 331 | 58 | 354 | 9.26e-36 | 133 |
Find 88 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAACTAATTTGATATTT+AGG | 0.142764 | 4_4:-58078384 | None:intergenic |
| TCTATCATATTGCTGCTTAT+TGG | 0.152916 | 4_4:+58077056 | Msa0690380:CDS |
| GGAAATGCACAAACATATTA+TGG | 0.170246 | 4_4:+58078216 | Msa0690380:CDS |
| CTTCTATGTTTGAACCTCTA+AGG | 0.203767 | 4_4:-58077612 | None:intergenic |
| GATGCACGTACCTTACTTAT+TGG | 0.215185 | 4_4:-58078490 | None:intergenic |
| TCGCGGTAGACACTTTAATT+TGG | 0.242868 | 4_4:-58077849 | None:intergenic |
| GCGATAGACACAACACTAAT+TGG | 0.256481 | 4_4:+58077868 | Msa0690380:CDS |
| GACCCAATCGTTCGCGGTTT+GGG | 0.260463 | 4_4:-58077680 | None:intergenic |
| TTATTAACATATGAGAAATA+AGG | 0.277410 | 4_4:-58078003 | None:intergenic |
| TTCCACTGCATTAGAATTTA+CGG | 0.279344 | 4_4:+58077091 | Msa0690380:CDS |
| CAATCCGTCGGTGTTTGTTA+TGG | 0.312388 | 4_4:+58077481 | Msa0690380:CDS |
| ACATTGCATCAAACAAGTTT+TGG | 0.313565 | 4_4:-58078089 | None:intergenic |
| TTATGCTTTGTTTACAAAAC+AGG | 0.317873 | 4_4:+58078047 | Msa0690380:CDS |
| TCAACCACTGCTTGCTTTGT+TGG | 0.330339 | 4_4:-58077523 | None:intergenic |
| ATAGGTCCATTAGGCCTCTT+AGG | 0.339039 | 4_4:-58078270 | None:intergenic |
| GAATTTGATTAAACATGTTA+AGG | 0.340941 | 4_4:+58078239 | Msa0690380:CDS |
| TGACCCAATCGTTCGCGGTT+TGG | 0.343008 | 4_4:-58077681 | None:intergenic |
| GTACGTGCATCGTGCTCTTA+TGG | 0.350194 | 4_4:+58078502 | Msa0690380:three_prime_UTR |
| AATCAAGACCAATGCTTTGT+TGG | 0.361398 | 4_4:-58078026 | None:intergenic |
| TCCACTGCATTAGAATTTAC+GGG | 0.389494 | 4_4:+58077092 | Msa0690380:CDS |
| ATGCCCAAACCGCGAACGAT+TGG | 0.395703 | 4_4:+58077677 | Msa0690380:CDS |
| GTTGATTTATACAAATCAAA+AGG | 0.397564 | 4_4:+58077541 | Msa0690380:CDS |
| GGTATACTCCAAGCCCTTAG+AGG | 0.397868 | 4_4:+58077598 | Msa0690380:CDS |
| AATATATCATCATTATTCAT+TGG | 0.405323 | 4_4:-58078546 | None:intergenic |
| TTGATATTTAGGTGATTTGT+CGG | 0.411081 | 4_4:-58078373 | None:intergenic |
| GGGAAGAACTGAATTTGTTT+CGG | 0.412595 | 4_4:-58077779 | None:intergenic |
| AATTTGATTAAACATGTTAA+GGG | 0.412973 | 4_4:+58078240 | Msa0690380:CDS |
| TGGCCATCTCAAGGTGGAAC+TGG | 0.422776 | 4_4:+58078183 | Msa0690380:CDS |
| GCTTGGAGTATACCTTGGTC+TGG | 0.424488 | 4_4:-58077589 | None:intergenic |
| GGTGTTTGTTATGGAGGAAA+TGG | 0.425699 | 4_4:+58077490 | Msa0690380:CDS |
| GAAATGCACAAACATATTAT+GGG | 0.431940 | 4_4:+58078217 | Msa0690380:CDS |
| GTGATTTGAGAACGTCGTTT+GGG | 0.436818 | 4_4:-58077648 | None:intergenic |
| TGTTTGAACCTCTAAGGGCT+TGG | 0.453566 | 4_4:-58077606 | None:intergenic |
| ATGCTGCTCTTGAGAAAGTA+GGG | 0.454697 | 4_4:+58078124 | Msa0690380:CDS |
| TATTAACATATGAGAAATAA+GGG | 0.456534 | 4_4:-58078002 | None:intergenic |
| TTTGTTGACCCAATCGTTCG+CGG | 0.462252 | 4_4:-58077686 | None:intergenic |
| GGAACTCCTAAGAGGCCTAA+TGG | 0.466080 | 4_4:+58078264 | Msa0690380:CDS |
| TTCTATGTTTGAACCTCTAA+GGG | 0.466463 | 4_4:-58077611 | None:intergenic |
| TGCCCAAACCGCGAACGATT+GGG | 0.476878 | 4_4:+58077678 | Msa0690380:CDS |
| TATGCTGCTCTTGAGAAAGT+AGG | 0.478615 | 4_4:+58078123 | Msa0690380:CDS |
| CATAACAAACACCGACGGAT+TGG | 0.479275 | 4_4:-58077480 | None:intergenic |
| AAACTTGTTTGATGCAATGT+TGG | 0.480831 | 4_4:+58078092 | Msa0690380:CDS |
| TTATACAAATCAAAAGGGAT+TGG | 0.486643 | 4_4:+58077547 | Msa0690380:CDS |
| AGTGATTTGAGAACGTCGTT+TGG | 0.488685 | 4_4:-58077649 | None:intergenic |
| GAATTTGTTTCGGCTGAACC+CGG | 0.491632 | 4_4:-58077769 | None:intergenic |
| TCTGAAATTGAGCGACACTT+TGG | 0.496250 | 4_4:+58078339 | Msa0690380:CDS |
| CTTGAAATAGCCAATAAGTA+AGG | 0.497086 | 4_4:+58078480 | Msa0690380:three_prime_UTR |
| AAGATTGTTGTGTCTGAGAG+TGG | 0.504963 | 4_4:+58078159 | Msa0690380:CDS |
| TAAGTCTCAATAGGTCCATT+AGG | 0.512608 | 4_4:-58078279 | None:intergenic |
| TGATATTTAGGTGATTTGTC+GGG | 0.514105 | 4_4:-58078372 | None:intergenic |
| TTGATTTATACAAATCAAAA+GGG | 0.517479 | 4_4:+58077542 | Msa0690380:CDS |
| AAACAGGGAAAGAATGAAGT+TGG | 0.526840 | 4_4:+58078063 | Msa0690380:CDS |
| GTTAATAACCAACAAAGCAT+TGG | 0.527284 | 4_4:+58078018 | Msa0690380:CDS |
| TATGATAGACATGGTTGTGT+TGG | 0.531941 | 4_4:-58077042 | None:intergenic |
| AAAATCAAATACATTGCAGT+TGG | 0.531962 | 4_4:+58077733 | Msa0690380:CDS |
| ACGCTGCAAGTGGTTACATA+AGG | 0.532172 | 4_4:+58077926 | Msa0690380:CDS |
| GAGAGTGGGTGGCCATCTCA+AGG | 0.533168 | 4_4:+58078174 | Msa0690380:CDS |
| TTGATTAAACATGTTAAGGG+TGG | 0.542157 | 4_4:+58078243 | Msa0690380:CDS |
| GTTCGATGAAAATCAGAAGC+CGG | 0.543224 | 4_4:+58078314 | Msa0690380:CDS |
| TTCGATGAAAATCAGAAGCC+GGG | 0.543831 | 4_4:+58078315 | Msa0690380:CDS |
| TCAAACATAGAAGTAATCCT+TGG | 0.548004 | 4_4:+58077622 | Msa0690380:CDS |
| AGTTGGCAATGAAGTTCACC+CGG | 0.550571 | 4_4:+58077750 | Msa0690380:CDS |
| TCCGTCGGTGTTTGTTATGG+AGG | 0.551421 | 4_4:+58077484 | Msa0690380:CDS |
| ACCCGTAAATTCTAATGCAG+TGG | 0.555138 | 4_4:-58077093 | None:intergenic |
| TAAGGGCTTGGAGTATACCT+TGG | 0.555442 | 4_4:-58077594 | None:intergenic |
| AATTTGTTTCGGCTGAACCC+GGG | 0.569052 | 4_4:-58077768 | None:intergenic |
| CTTGGTCTGGATTGTATATG+CGG | 0.569910 | 4_4:-58077576 | None:intergenic |
| TATGCTTTGTTTACAAAACA+GGG | 0.572886 | 4_4:+58078048 | Msa0690380:CDS |
| GGTGGAACTGGAGCTAGTGT+TGG | 0.573408 | 4_4:+58078195 | Msa0690380:CDS |
| TGTCGCTCAATTTCAGAACC+CGG | 0.574035 | 4_4:-58078333 | None:intergenic |
| AGATTGTTGTGTCTGAGAGT+GGG | 0.578374 | 4_4:+58078160 | Msa0690380:CDS |
| TTAAGGGTGGAACTCCTAAG+AGG | 0.585631 | 4_4:+58078256 | Msa0690380:CDS |
| ATATCTTCAGCAAACTTACA+AGG | 0.589493 | 4_4:+58077826 | Msa0690380:CDS |
| GCTCCAGTTCCACCTTGAGA+TGG | 0.597438 | 4_4:-58078186 | None:intergenic |
| CATGCAGTTGTCCAATCCGT+CGG | 0.599010 | 4_4:+58077469 | Msa0690380:intron |
| TGCTGCTCTTGAGAAAGTAG+GGG | 0.607774 | 4_4:+58078125 | Msa0690380:CDS |
| GGGTAGACGTTAGCAAGAAG+TGG | 0.621501 | 4_4:-58077982 | None:intergenic |
| GTTGGCAATGAAGTTCACCC+GGG | 0.631911 | 4_4:+58077751 | Msa0690380:CDS |
| CGCATATACAATCCAGACCA+AGG | 0.635364 | 4_4:+58077577 | Msa0690380:CDS |
| TCCTCCATAACAAACACCGA+CGG | 0.636400 | 4_4:-58077485 | None:intergenic |
| AATTAGTGTTGTGTCTATCG+CGG | 0.640664 | 4_4:-58077866 | None:intergenic |
| AAATCTTACCCACCAAAAGA+CGG | 0.644937 | 4_4:+58077892 | Msa0690380:CDS |
| GCTGCTCTTGAGAAAGTAGG+GGG | 0.653642 | 4_4:+58078126 | Msa0690380:CDS |
| TCTACCAACAAAGCAAGCAG+TGG | 0.662167 | 4_4:+58077519 | Msa0690380:CDS |
| AAGCAGCAATATGATAGACA+TGG | 0.667052 | 4_4:-58077051 | None:intergenic |
| TTGTTGTGTCTGAGAGTGGG+TGG | 0.678415 | 4_4:+58078163 | Msa0690380:CDS |
| GAACGTCGTTTGGGACACCA+AGG | 0.683186 | 4_4:-58077639 | None:intergenic |
| AGTGGGTGGCCATCTCAAGG+TGG | 0.723367 | 4_4:+58078177 | Msa0690380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCTAAAATAAAATAGAAAA+AGG | - | chr4_4:58077192-58077211 | None:intergenic | 15.0% |
| !! | TACATATAACTTATTAAGTA+AGG | - | chr4_4:58077340-58077359 | None:intergenic | 15.0% |
| !! | TTGATTTATACAAATCAAAA+GGG | + | chr4_4:58077542-58077561 | Msa0690380:CDS | 15.0% |
| !! | TATTAACATATGAGAAATAA+GGG | - | chr4_4:58078005-58078024 | None:intergenic | 15.0% |
| !! | TTATTAACATATGAGAAATA+AGG | - | chr4_4:58078006-58078025 | None:intergenic | 15.0% |
| !! | AATTTGATTAAACATGTTAA+GGG | + | chr4_4:58078240-58078259 | Msa0690380:CDS | 15.0% |
| !! | AATATATCATCATTATTCAT+TGG | - | chr4_4:58078549-58078568 | None:intergenic | 15.0% |
| !! | TGCTAAAATAAAATAGAAAA+AGG | - | chr4_4:58077192-58077211 | None:intergenic | 15.0% |
| !! | TACATATAACTTATTAAGTA+AGG | - | chr4_4:58077340-58077359 | None:intergenic | 15.0% |
| !! | TTGATTTATACAAATCAAAA+GGG | + | chr4_4:58077542-58077561 | Msa0690380:CDS | 15.0% |
| !! | TATTAACATATGAGAAATAA+GGG | - | chr4_4:58078005-58078024 | None:intergenic | 15.0% |
| !! | TTATTAACATATGAGAAATA+AGG | - | chr4_4:58078006-58078025 | None:intergenic | 15.0% |
| !! | AATTTGATTAAACATGTTAA+GGG | + | chr4_4:58078240-58078259 | Msa0690380:CDS | 15.0% |
| !! | AATATATCATCATTATTCAT+TGG | - | chr4_4:58078549-58078568 | None:intergenic | 15.0% |
| !!! | TTAATTCTTCCTTTTTTCTT+TGG | + | chr4_4:58077231-58077250 | Msa0690380:intron | 20.0% |
| !! | ATTTATCAACCTTATATTTC+TGG | + | chr4_4:58077417-58077436 | Msa0690380:intron | 20.0% |
| !!! | GTTGATTTATACAAATCAAA+AGG | + | chr4_4:58077541-58077560 | Msa0690380:CDS | 20.0% |
| !! | CTAACTAAAAAGTTAACAAT+AGG | - | chr4_4:58077952-58077971 | None:intergenic | 20.0% |
| !! | GAATTTGATTAAACATGTTA+AGG | + | chr4_4:58078239-58078258 | Msa0690380:CDS | 20.0% |
| !! | CTGAAACTAATTTGATATTT+AGG | - | chr4_4:58078387-58078406 | None:intergenic | 20.0% |
| !!! | TTAATTCTTCCTTTTTTCTT+TGG | + | chr4_4:58077231-58077250 | Msa0690380:intron | 20.0% |
| !! | ATTTATCAACCTTATATTTC+TGG | + | chr4_4:58077417-58077436 | Msa0690380:intron | 20.0% |
| !!! | GTTGATTTATACAAATCAAA+AGG | + | chr4_4:58077541-58077560 | Msa0690380:CDS | 20.0% |
| !! | CTAACTAAAAAGTTAACAAT+AGG | - | chr4_4:58077952-58077971 | None:intergenic | 20.0% |
| !! | GAATTTGATTAAACATGTTA+AGG | + | chr4_4:58078239-58078258 | Msa0690380:CDS | 20.0% |
| !! | CTGAAACTAATTTGATATTT+AGG | - | chr4_4:58078387-58078406 | None:intergenic | 20.0% |
| ! | TAGAAAAAGGAGAAATAATG+AGG | - | chr4_4:58077179-58077198 | None:intergenic | 25.0% |
| !!! | AACCTTATATTTCTGGTAAT+TGG | + | chr4_4:58077424-58077443 | Msa0690380:intron | 25.0% |
| ! | AACCAATTACCAGAAATATA+AGG | - | chr4_4:58077429-58077448 | None:intergenic | 25.0% |
| ! | TTATACAAATCAAAAGGGAT+TGG | + | chr4_4:58077547-58077566 | Msa0690380:CDS | 25.0% |
| ! | AAAATCAAATACATTGCAGT+TGG | + | chr4_4:58077733-58077752 | Msa0690380:CDS | 25.0% |
| !! | TTTTTGAATGTTTTGCATTG+CGG | - | chr4_4:58077803-58077822 | None:intergenic | 25.0% |
| !!! | GTTAACTTTTTAGTTAGCAA+CGG | + | chr4_4:58077955-58077974 | Msa0690380:CDS | 25.0% |
| !!! | TTATGCTTTGTTTACAAAAC+AGG | + | chr4_4:58078047-58078066 | Msa0690380:CDS | 25.0% |
| !!! | TATGCTTTGTTTACAAAACA+GGG | + | chr4_4:58078048-58078067 | Msa0690380:CDS | 25.0% |
| ! | GAAATGCACAAACATATTAT+GGG | + | chr4_4:58078217-58078236 | Msa0690380:CDS | 25.0% |
| !! | TTGATATTTAGGTGATTTGT+CGG | - | chr4_4:58078376-58078395 | None:intergenic | 25.0% |
| ! | TAGAAAAAGGAGAAATAATG+AGG | - | chr4_4:58077179-58077198 | None:intergenic | 25.0% |
| !!! | AACCTTATATTTCTGGTAAT+TGG | + | chr4_4:58077424-58077443 | Msa0690380:intron | 25.0% |
| ! | AACCAATTACCAGAAATATA+AGG | - | chr4_4:58077429-58077448 | None:intergenic | 25.0% |
| ! | TTATACAAATCAAAAGGGAT+TGG | + | chr4_4:58077547-58077566 | Msa0690380:CDS | 25.0% |
| ! | AAAATCAAATACATTGCAGT+TGG | + | chr4_4:58077733-58077752 | Msa0690380:CDS | 25.0% |
| !! | TTTTTGAATGTTTTGCATTG+CGG | - | chr4_4:58077803-58077822 | None:intergenic | 25.0% |
| !!! | GTTAACTTTTTAGTTAGCAA+CGG | + | chr4_4:58077955-58077974 | Msa0690380:CDS | 25.0% |
| !!! | TTATGCTTTGTTTACAAAAC+AGG | + | chr4_4:58078047-58078066 | Msa0690380:CDS | 25.0% |
| !!! | TATGCTTTGTTTACAAAACA+GGG | + | chr4_4:58078048-58078067 | Msa0690380:CDS | 25.0% |
| ! | GAAATGCACAAACATATTAT+GGG | + | chr4_4:58078217-58078236 | Msa0690380:CDS | 25.0% |
| !! | TTGATATTTAGGTGATTTGT+CGG | - | chr4_4:58078376-58078395 | None:intergenic | 25.0% |
| ! | TCTATCATATTGCTGCTTAT+TGG | + | chr4_4:58077056-58077075 | Msa0690380:CDS | 30.0% |
| TTCCACTGCATTAGAATTTA+CGG | + | chr4_4:58077091-58077110 | Msa0690380:CDS | 30.0% | |
| TAGTCATAGCCAAAGAAAAA+AGG | - | chr4_4:58077243-58077262 | None:intergenic | 30.0% | |
| ! | TATGAGAATAACTTGTCAAG+TGG | + | chr4_4:58077261-58077280 | Msa0690380:intron | 30.0% |
| TTCTATGTTTGAACCTCTAA+GGG | - | chr4_4:58077614-58077633 | None:intergenic | 30.0% | |
| TCAAACATAGAAGTAATCCT+TGG | + | chr4_4:58077622-58077641 | Msa0690380:CDS | 30.0% | |
| ! | TTTTGAATGTTTTGCATTGC+GGG | - | chr4_4:58077802-58077821 | None:intergenic | 30.0% |
| ATATCTTCAGCAAACTTACA+AGG | + | chr4_4:58077826-58077845 | Msa0690380:CDS | 30.0% | |
| GTTAATAACCAACAAAGCAT+TGG | + | chr4_4:58078018-58078037 | Msa0690380:CDS | 30.0% | |
| ! | ACATTGCATCAAACAAGTTT+TGG | - | chr4_4:58078092-58078111 | None:intergenic | 30.0% |
| ! | AAACTTGTTTGATGCAATGT+TGG | + | chr4_4:58078092-58078111 | Msa0690380:CDS | 30.0% |
| GGAAATGCACAAACATATTA+TGG | + | chr4_4:58078216-58078235 | Msa0690380:CDS | 30.0% | |
| TTGATTAAACATGTTAAGGG+TGG | + | chr4_4:58078243-58078262 | Msa0690380:CDS | 30.0% | |
| GCAAAAAGATAAGTCTCAAT+AGG | - | chr4_4:58078291-58078310 | None:intergenic | 30.0% | |
| ! | TGATATTTAGGTGATTTGTC+GGG | - | chr4_4:58078375-58078394 | None:intergenic | 30.0% |
| CTTGAAATAGCCAATAAGTA+AGG | + | chr4_4:58078480-58078499 | Msa0690380:three_prime_UTR | 30.0% | |
| ! | TCTATCATATTGCTGCTTAT+TGG | + | chr4_4:58077056-58077075 | Msa0690380:CDS | 30.0% |
| TTCCACTGCATTAGAATTTA+CGG | + | chr4_4:58077091-58077110 | Msa0690380:CDS | 30.0% | |
| TAGTCATAGCCAAAGAAAAA+AGG | - | chr4_4:58077243-58077262 | None:intergenic | 30.0% | |
| ! | TATGAGAATAACTTGTCAAG+TGG | + | chr4_4:58077261-58077280 | Msa0690380:intron | 30.0% |
| TTCTATGTTTGAACCTCTAA+GGG | - | chr4_4:58077614-58077633 | None:intergenic | 30.0% | |
| TCAAACATAGAAGTAATCCT+TGG | + | chr4_4:58077622-58077641 | Msa0690380:CDS | 30.0% | |
| ! | TTTTGAATGTTTTGCATTGC+GGG | - | chr4_4:58077802-58077821 | None:intergenic | 30.0% |
| ATATCTTCAGCAAACTTACA+AGG | + | chr4_4:58077826-58077845 | Msa0690380:CDS | 30.0% | |
| GTTAATAACCAACAAAGCAT+TGG | + | chr4_4:58078018-58078037 | Msa0690380:CDS | 30.0% | |
| ! | ACATTGCATCAAACAAGTTT+TGG | - | chr4_4:58078092-58078111 | None:intergenic | 30.0% |
| ! | AAACTTGTTTGATGCAATGT+TGG | + | chr4_4:58078092-58078111 | Msa0690380:CDS | 30.0% |
| GGAAATGCACAAACATATTA+TGG | + | chr4_4:58078216-58078235 | Msa0690380:CDS | 30.0% | |
| TTGATTAAACATGTTAAGGG+TGG | + | chr4_4:58078243-58078262 | Msa0690380:CDS | 30.0% | |
| GCAAAAAGATAAGTCTCAAT+AGG | - | chr4_4:58078291-58078310 | None:intergenic | 30.0% | |
| ! | TGATATTTAGGTGATTTGTC+GGG | - | chr4_4:58078375-58078394 | None:intergenic | 30.0% |
| CTTGAAATAGCCAATAAGTA+AGG | + | chr4_4:58078480-58078499 | Msa0690380:three_prime_UTR | 30.0% | |
| TATGATAGACATGGTTGTGT+TGG | - | chr4_4:58077045-58077064 | None:intergenic | 35.0% | |
| AAGCAGCAATATGATAGACA+TGG | - | chr4_4:58077054-58077073 | None:intergenic | 35.0% | |
| TCCACTGCATTAGAATTTAC+GGG | + | chr4_4:58077092-58077111 | Msa0690380:CDS | 35.0% | |
| CTTCTATGTTTGAACCTCTA+AGG | - | chr4_4:58077615-58077634 | None:intergenic | 35.0% | |
| ! | GGGAAGAACTGAATTTGTTT+CGG | - | chr4_4:58077782-58077801 | None:intergenic | 35.0% |
| AATTAGTGTTGTGTCTATCG+CGG | - | chr4_4:58077869-58077888 | None:intergenic | 35.0% | |
| AAATCTTACCCACCAAAAGA+CGG | + | chr4_4:58077892-58077911 | Msa0690380:CDS | 35.0% | |
| ! | TAAAAACACCGTCTTTTGGT+GGG | - | chr4_4:58077903-58077922 | None:intergenic | 35.0% |
| AATCAAGACCAATGCTTTGT+TGG | - | chr4_4:58078029-58078048 | None:intergenic | 35.0% | |
| AAACAGGGAAAGAATGAAGT+TGG | + | chr4_4:58078063-58078082 | Msa0690380:CDS | 35.0% | |
| TAAGTCTCAATAGGTCCATT+AGG | - | chr4_4:58078282-58078301 | None:intergenic | 35.0% | |
| TATGATAGACATGGTTGTGT+TGG | - | chr4_4:58077045-58077064 | None:intergenic | 35.0% | |
| AAGCAGCAATATGATAGACA+TGG | - | chr4_4:58077054-58077073 | None:intergenic | 35.0% | |
| TCCACTGCATTAGAATTTAC+GGG | + | chr4_4:58077092-58077111 | Msa0690380:CDS | 35.0% | |
| CTTCTATGTTTGAACCTCTA+AGG | - | chr4_4:58077615-58077634 | None:intergenic | 35.0% | |
| ! | GGGAAGAACTGAATTTGTTT+CGG | - | chr4_4:58077782-58077801 | None:intergenic | 35.0% |
| AATTAGTGTTGTGTCTATCG+CGG | - | chr4_4:58077869-58077888 | None:intergenic | 35.0% | |
| AAATCTTACCCACCAAAAGA+CGG | + | chr4_4:58077892-58077911 | Msa0690380:CDS | 35.0% | |
| ! | TAAAAACACCGTCTTTTGGT+GGG | - | chr4_4:58077903-58077922 | None:intergenic | 35.0% |
| AATCAAGACCAATGCTTTGT+TGG | - | chr4_4:58078029-58078048 | None:intergenic | 35.0% | |
| AAACAGGGAAAGAATGAAGT+TGG | + | chr4_4:58078063-58078082 | Msa0690380:CDS | 35.0% | |
| TAAGTCTCAATAGGTCCATT+AGG | - | chr4_4:58078282-58078301 | None:intergenic | 35.0% | |
| ACCCGTAAATTCTAATGCAG+TGG | - | chr4_4:58077096-58077115 | None:intergenic | 40.0% | |
| TCCTCTCTCTCTAATTAGCA+TGG | + | chr4_4:58077125-58077144 | Msa0690380:intron | 40.0% | |
| TCCATGCTAATTAGAGAGAG+AGG | - | chr4_4:58077129-58077148 | None:intergenic | 40.0% | |
| !! | GGTGTTTGTTATGGAGGAAA+TGG | + | chr4_4:58077490-58077509 | Msa0690380:CDS | 40.0% |
| CTTGGTCTGGATTGTATATG+CGG | - | chr4_4:58077579-58077598 | None:intergenic | 40.0% | |
| GTGATTTGAGAACGTCGTTT+GGG | - | chr4_4:58077651-58077670 | None:intergenic | 40.0% | |
| AGTGATTTGAGAACGTCGTT+TGG | - | chr4_4:58077652-58077671 | None:intergenic | 40.0% | |
| TCGCGGTAGACACTTTAATT+TGG | - | chr4_4:58077852-58077871 | None:intergenic | 40.0% | |
| GCGATAGACACAACACTAAT+TGG | + | chr4_4:58077868-58077887 | Msa0690380:CDS | 40.0% | |
| ! | CTAAAAACACCGTCTTTTGG+TGG | - | chr4_4:58077904-58077923 | None:intergenic | 40.0% |
| ! | TCGCTAAAAACACCGTCTTT+TGG | - | chr4_4:58077907-58077926 | None:intergenic | 40.0% |
| TATGCTGCTCTTGAGAAAGT+AGG | + | chr4_4:58078123-58078142 | Msa0690380:CDS | 40.0% | |
| ATGCTGCTCTTGAGAAAGTA+GGG | + | chr4_4:58078124-58078143 | Msa0690380:CDS | 40.0% | |
| AAGATTGTTGTGTCTGAGAG+TGG | + | chr4_4:58078159-58078178 | Msa0690380:CDS | 40.0% | |
| AGATTGTTGTGTCTGAGAGT+GGG | + | chr4_4:58078160-58078179 | Msa0690380:CDS | 40.0% | |
| GTTCGATGAAAATCAGAAGC+CGG | + | chr4_4:58078314-58078333 | Msa0690380:CDS | 40.0% | |
| TTCGATGAAAATCAGAAGCC+GGG | + | chr4_4:58078315-58078334 | Msa0690380:CDS | 40.0% | |
| ! | TCTGAAATTGAGCGACACTT+TGG | + | chr4_4:58078339-58078358 | Msa0690380:CDS | 40.0% |
| GATGCACGTACCTTACTTAT+TGG | - | chr4_4:58078493-58078512 | None:intergenic | 40.0% | |
| ACCCGTAAATTCTAATGCAG+TGG | - | chr4_4:58077096-58077115 | None:intergenic | 40.0% | |
| TCCTCTCTCTCTAATTAGCA+TGG | + | chr4_4:58077125-58077144 | Msa0690380:intron | 40.0% | |
| TCCATGCTAATTAGAGAGAG+AGG | - | chr4_4:58077129-58077148 | None:intergenic | 40.0% | |
| !! | GGTGTTTGTTATGGAGGAAA+TGG | + | chr4_4:58077490-58077509 | Msa0690380:CDS | 40.0% |
| CTTGGTCTGGATTGTATATG+CGG | - | chr4_4:58077579-58077598 | None:intergenic | 40.0% | |
| GTGATTTGAGAACGTCGTTT+GGG | - | chr4_4:58077651-58077670 | None:intergenic | 40.0% | |
| AGTGATTTGAGAACGTCGTT+TGG | - | chr4_4:58077652-58077671 | None:intergenic | 40.0% | |
| TCGCGGTAGACACTTTAATT+TGG | - | chr4_4:58077852-58077871 | None:intergenic | 40.0% | |
| GCGATAGACACAACACTAAT+TGG | + | chr4_4:58077868-58077887 | Msa0690380:CDS | 40.0% | |
| ! | CTAAAAACACCGTCTTTTGG+TGG | - | chr4_4:58077904-58077923 | None:intergenic | 40.0% |
| ! | TCGCTAAAAACACCGTCTTT+TGG | - | chr4_4:58077907-58077926 | None:intergenic | 40.0% |
| TATGCTGCTCTTGAGAAAGT+AGG | + | chr4_4:58078123-58078142 | Msa0690380:CDS | 40.0% | |
| ATGCTGCTCTTGAGAAAGTA+GGG | + | chr4_4:58078124-58078143 | Msa0690380:CDS | 40.0% | |
| AAGATTGTTGTGTCTGAGAG+TGG | + | chr4_4:58078159-58078178 | Msa0690380:CDS | 40.0% | |
| AGATTGTTGTGTCTGAGAGT+GGG | + | chr4_4:58078160-58078179 | Msa0690380:CDS | 40.0% | |
| GTTCGATGAAAATCAGAAGC+CGG | + | chr4_4:58078314-58078333 | Msa0690380:CDS | 40.0% | |
| TTCGATGAAAATCAGAAGCC+GGG | + | chr4_4:58078315-58078334 | Msa0690380:CDS | 40.0% | |
| ! | TCTGAAATTGAGCGACACTT+TGG | + | chr4_4:58078339-58078358 | Msa0690380:CDS | 40.0% |
| GATGCACGTACCTTACTTAT+TGG | - | chr4_4:58078493-58078512 | None:intergenic | 40.0% | |
| CATAACAAACACCGACGGAT+TGG | - | chr4_4:58077483-58077502 | None:intergenic | 45.0% | |
| ! | CAATCCGTCGGTGTTTGTTA+TGG | + | chr4_4:58077481-58077500 | Msa0690380:CDS | 45.0% |
| TCCTCCATAACAAACACCGA+CGG | - | chr4_4:58077488-58077507 | None:intergenic | 45.0% | |
| TCTACCAACAAAGCAAGCAG+TGG | + | chr4_4:58077519-58077538 | Msa0690380:CDS | 45.0% | |
| TCAACCACTGCTTGCTTTGT+TGG | - | chr4_4:58077526-58077545 | None:intergenic | 45.0% | |
| CGCATATACAATCCAGACCA+AGG | + | chr4_4:58077577-58077596 | Msa0690380:CDS | 45.0% | |
| TAAGGGCTTGGAGTATACCT+TGG | - | chr4_4:58077597-58077616 | None:intergenic | 45.0% | |
| ! | TGTTTGAACCTCTAAGGGCT+TGG | - | chr4_4:58077609-58077628 | None:intergenic | 45.0% |
| TTTGTTGACCCAATCGTTCG+CGG | - | chr4_4:58077689-58077708 | None:intergenic | 45.0% | |
| AGTTGGCAATGAAGTTCACC+CGG | + | chr4_4:58077750-58077769 | Msa0690380:CDS | 45.0% | |
| ! | AATTTGTTTCGGCTGAACCC+GGG | - | chr4_4:58077771-58077790 | None:intergenic | 45.0% |
| ! | GAATTTGTTTCGGCTGAACC+CGG | - | chr4_4:58077772-58077791 | None:intergenic | 45.0% |
| ACGCTGCAAGTGGTTACATA+AGG | + | chr4_4:58077926-58077945 | Msa0690380:CDS | 45.0% | |
| TGCTGCTCTTGAGAAAGTAG+GGG | + | chr4_4:58078125-58078144 | Msa0690380:CDS | 45.0% | |
| TTAAGGGTGGAACTCCTAAG+AGG | + | chr4_4:58078256-58078275 | Msa0690380:CDS | 45.0% | |
| ATAGGTCCATTAGGCCTCTT+AGG | - | chr4_4:58078273-58078292 | None:intergenic | 45.0% | |
| TGTCGCTCAATTTCAGAACC+CGG | - | chr4_4:58078336-58078355 | None:intergenic | 45.0% | |
| CATAACAAACACCGACGGAT+TGG | - | chr4_4:58077483-58077502 | None:intergenic | 45.0% | |
| ! | CAATCCGTCGGTGTTTGTTA+TGG | + | chr4_4:58077481-58077500 | Msa0690380:CDS | 45.0% |
| TCCTCCATAACAAACACCGA+CGG | - | chr4_4:58077488-58077507 | None:intergenic | 45.0% | |
| TCTACCAACAAAGCAAGCAG+TGG | + | chr4_4:58077519-58077538 | Msa0690380:CDS | 45.0% | |
| TCAACCACTGCTTGCTTTGT+TGG | - | chr4_4:58077526-58077545 | None:intergenic | 45.0% | |
| CGCATATACAATCCAGACCA+AGG | + | chr4_4:58077577-58077596 | Msa0690380:CDS | 45.0% | |
| TAAGGGCTTGGAGTATACCT+TGG | - | chr4_4:58077597-58077616 | None:intergenic | 45.0% | |
| ! | TGTTTGAACCTCTAAGGGCT+TGG | - | chr4_4:58077609-58077628 | None:intergenic | 45.0% |
| TTTGTTGACCCAATCGTTCG+CGG | - | chr4_4:58077689-58077708 | None:intergenic | 45.0% | |
| AGTTGGCAATGAAGTTCACC+CGG | + | chr4_4:58077750-58077769 | Msa0690380:CDS | 45.0% | |
| ! | AATTTGTTTCGGCTGAACCC+GGG | - | chr4_4:58077771-58077790 | None:intergenic | 45.0% |
| ! | GAATTTGTTTCGGCTGAACC+CGG | - | chr4_4:58077772-58077791 | None:intergenic | 45.0% |
| ACGCTGCAAGTGGTTACATA+AGG | + | chr4_4:58077926-58077945 | Msa0690380:CDS | 45.0% | |
| TGCTGCTCTTGAGAAAGTAG+GGG | + | chr4_4:58078125-58078144 | Msa0690380:CDS | 45.0% | |
| TTAAGGGTGGAACTCCTAAG+AGG | + | chr4_4:58078256-58078275 | Msa0690380:CDS | 45.0% | |
| ATAGGTCCATTAGGCCTCTT+AGG | - | chr4_4:58078273-58078292 | None:intergenic | 45.0% | |
| TGTCGCTCAATTTCAGAACC+CGG | - | chr4_4:58078336-58078355 | None:intergenic | 45.0% | |
| CATGCAGTTGTCCAATCCGT+CGG | + | chr4_4:58077469-58077488 | Msa0690380:intron | 50.0% | |
| !! | TCCGTCGGTGTTTGTTATGG+AGG | + | chr4_4:58077484-58077503 | Msa0690380:CDS | 50.0% |
| GCTTGGAGTATACCTTGGTC+TGG | - | chr4_4:58077592-58077611 | None:intergenic | 50.0% | |
| GGTATACTCCAAGCCCTTAG+AGG | + | chr4_4:58077598-58077617 | Msa0690380:CDS | 50.0% | |
| GTTGGCAATGAAGTTCACCC+GGG | + | chr4_4:58077751-58077770 | Msa0690380:CDS | 50.0% | |
| !!! | GTTTTTAGCGACGCTGCAAG+TGG | + | chr4_4:58077916-58077935 | Msa0690380:CDS | 50.0% |
| GGGTAGACGTTAGCAAGAAG+TGG | - | chr4_4:58077985-58078004 | None:intergenic | 50.0% | |
| GCTGCTCTTGAGAAAGTAGG+GGG | + | chr4_4:58078126-58078145 | Msa0690380:CDS | 50.0% | |
| TTGTTGTGTCTGAGAGTGGG+TGG | + | chr4_4:58078163-58078182 | Msa0690380:CDS | 50.0% | |
| GGAACTCCTAAGAGGCCTAA+TGG | + | chr4_4:58078264-58078283 | Msa0690380:CDS | 50.0% | |
| GTACGTGCATCGTGCTCTTA+TGG | + | chr4_4:58078502-58078521 | Msa0690380:three_prime_UTR | 50.0% | |
| CATGCAGTTGTCCAATCCGT+CGG | + | chr4_4:58077469-58077488 | Msa0690380:intron | 50.0% | |
| !! | TCCGTCGGTGTTTGTTATGG+AGG | + | chr4_4:58077484-58077503 | Msa0690380:CDS | 50.0% |
| GCTTGGAGTATACCTTGGTC+TGG | - | chr4_4:58077592-58077611 | None:intergenic | 50.0% | |
| GGTATACTCCAAGCCCTTAG+AGG | + | chr4_4:58077598-58077617 | Msa0690380:CDS | 50.0% | |
| GTTGGCAATGAAGTTCACCC+GGG | + | chr4_4:58077751-58077770 | Msa0690380:CDS | 50.0% | |
| !!! | GTTTTTAGCGACGCTGCAAG+TGG | + | chr4_4:58077916-58077935 | Msa0690380:CDS | 50.0% |
| GGGTAGACGTTAGCAAGAAG+TGG | - | chr4_4:58077985-58078004 | None:intergenic | 50.0% | |
| GCTGCTCTTGAGAAAGTAGG+GGG | + | chr4_4:58078126-58078145 | Msa0690380:CDS | 50.0% | |
| TTGTTGTGTCTGAGAGTGGG+TGG | + | chr4_4:58078163-58078182 | Msa0690380:CDS | 50.0% | |
| GGAACTCCTAAGAGGCCTAA+TGG | + | chr4_4:58078264-58078283 | Msa0690380:CDS | 50.0% | |
| GTACGTGCATCGTGCTCTTA+TGG | + | chr4_4:58078502-58078521 | Msa0690380:three_prime_UTR | 50.0% | |
| ! | GAACGTCGTTTGGGACACCA+AGG | - | chr4_4:58077642-58077661 | None:intergenic | 55.0% |
| ATGCCCAAACCGCGAACGAT+TGG | + | chr4_4:58077677-58077696 | Msa0690380:CDS | 55.0% | |
| TGCCCAAACCGCGAACGATT+GGG | + | chr4_4:58077678-58077697 | Msa0690380:CDS | 55.0% | |
| GACCCAATCGTTCGCGGTTT+GGG | - | chr4_4:58077683-58077702 | None:intergenic | 55.0% | |
| TGACCCAATCGTTCGCGGTT+TGG | - | chr4_4:58077684-58077703 | None:intergenic | 55.0% | |
| TGGCCATCTCAAGGTGGAAC+TGG | + | chr4_4:58078183-58078202 | Msa0690380:CDS | 55.0% | |
| GCTCCAGTTCCACCTTGAGA+TGG | - | chr4_4:58078189-58078208 | None:intergenic | 55.0% | |
| GGTGGAACTGGAGCTAGTGT+TGG | + | chr4_4:58078195-58078214 | Msa0690380:CDS | 55.0% | |
| ! | GAACGTCGTTTGGGACACCA+AGG | - | chr4_4:58077642-58077661 | None:intergenic | 55.0% |
| ATGCCCAAACCGCGAACGAT+TGG | + | chr4_4:58077677-58077696 | Msa0690380:CDS | 55.0% | |
| TGCCCAAACCGCGAACGATT+GGG | + | chr4_4:58077678-58077697 | Msa0690380:CDS | 55.0% | |
| GACCCAATCGTTCGCGGTTT+GGG | - | chr4_4:58077683-58077702 | None:intergenic | 55.0% | |
| TGACCCAATCGTTCGCGGTT+TGG | - | chr4_4:58077684-58077703 | None:intergenic | 55.0% | |
| TGGCCATCTCAAGGTGGAAC+TGG | + | chr4_4:58078183-58078202 | Msa0690380:CDS | 55.0% | |
| GCTCCAGTTCCACCTTGAGA+TGG | - | chr4_4:58078189-58078208 | None:intergenic | 55.0% | |
| GGTGGAACTGGAGCTAGTGT+TGG | + | chr4_4:58078195-58078214 | Msa0690380:CDS | 55.0% | |
| GAGAGTGGGTGGCCATCTCA+AGG | + | chr4_4:58078174-58078193 | Msa0690380:CDS | 60.0% | |
| AGTGGGTGGCCATCTCAAGG+TGG | + | chr4_4:58078177-58078196 | Msa0690380:CDS | 60.0% | |
| GAGAGTGGGTGGCCATCTCA+AGG | + | chr4_4:58078174-58078193 | Msa0690380:CDS | 60.0% | |
| AGTGGGTGGCCATCTCAAGG+TGG | + | chr4_4:58078177-58078196 | Msa0690380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 58077000 | 58078577 | 58077000 | ID=Msa0690380;Name=Msa0690380 |
| chr4_4 | mRNA | 58077000 | 58078577 | 58077000 | ID=Msa0690380-mRNA-1;Parent=Msa0690380;Name=Msa0690380-mRNA-1;_AED=0.28;_eAED=0.28;_QI=53|1|1|1|0|0|2|167|331 |
| chr4_4 | exon | 58077000 | 58077113 | 58077000 | ID=Msa0690380-mRNA-1:exon:15566;Parent=Msa0690380-mRNA-1 |
| chr4_4 | exon | 58077476 | 58078577 | 58077476 | ID=Msa0690380-mRNA-1:exon:15567;Parent=Msa0690380-mRNA-1 |
| chr4_4 | five_prime_UTR | 58077000 | 58077052 | 58077000 | ID=Msa0690380-mRNA-1:five_prime_utr;Parent=Msa0690380-mRNA-1 |
| chr4_4 | CDS | 58077053 | 58077113 | 58077053 | ID=Msa0690380-mRNA-1:cds;Parent=Msa0690380-mRNA-1 |
| chr4_4 | CDS | 58077476 | 58078410 | 58077476 | ID=Msa0690380-mRNA-1:cds;Parent=Msa0690380-mRNA-1 |
| chr4_4 | three_prime_UTR | 58078411 | 58078577 | 58078411 | ID=Msa0690380-mRNA-1:three_prime_utr;Parent=Msa0690380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
