Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648100 | XP_013456667.1 | 98.270 | 578 | 7 | 1 | 1 | 575 | 1 | 578 | 0.0 | 1179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648100 | sp|Q500V2|FLY2_ARATH | 75.229 | 545 | 132 | 1 | 34 | 575 | 15 | 559 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648100 | A0A072UNS6 | 98.270 | 578 | 7 | 1 | 1 | 575 | 1 | 578 | 0.0 | 1179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631330 | Msa0648100 | 0.809852 | 1.541389e-50 | -8.615850e-47 |
| Msa0648100 | Msa0691240 | 0.953230 | 4.330383e-111 | -8.615850e-47 |
| Msa0648100 | Msa1374180 | 0.816888 | 4.384868e-52 | -8.615850e-47 |
| Msa0648100 | Msa1382680 | 0.805360 | 1.386260e-49 | -8.615850e-47 |
| Msa0143820 | Msa0648100 | 0.807545 | 4.797384e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648100 | MtrunA17_Chr4g0040321 | 98.270 | 578 | 7 | 1 | 1 | 575 | 1 | 578 | 0.0 | 1179 |
| Msa0648100 | MtrunA17_Chr3g0128611 | 58.667 | 75 | 30 | 1 | 442 | 516 | 22 | 95 | 2.99e-23 | 94.4 |
| Msa0648100 | MtrunA17_Chr3g0128601 | 60.345 | 58 | 23 | 0 | 236 | 293 | 11 | 68 | 1.08e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648100 | AT2G20650.2 | 75.229 | 545 | 132 | 1 | 34 | 575 | 15 | 559 | 0.0 | 858 |
| Msa0648100 | AT2G20650.1 | 75.229 | 545 | 132 | 1 | 34 | 575 | 15 | 559 | 0.0 | 858 |
| Msa0648100 | AT4G28370.3 | 73.905 | 548 | 140 | 1 | 31 | 575 | 15 | 562 | 0.0 | 847 |
| Msa0648100 | AT4G28370.4 | 73.905 | 548 | 140 | 1 | 31 | 575 | 15 | 562 | 0.0 | 847 |
| Msa0648100 | AT4G28370.1 | 73.905 | 548 | 140 | 1 | 31 | 575 | 15 | 562 | 0.0 | 847 |
| Msa0648100 | AT4G28370.2 | 73.905 | 548 | 140 | 1 | 31 | 575 | 15 | 562 | 0.0 | 847 |
Find 152 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAACTCAAATATAATTT+TGG | 0.166355 | 4_3:-54515737 | Msa0648100:intron |
| GTTATATTCCATTGTGAAAA+TGG | 0.178125 | 4_3:+54520061 | None:intergenic |
| TCTTGCAGATGGGATTCTTT+TGG | 0.195079 | 4_3:-54516511 | Msa0648100:intron |
| CAATGGCTCTTCTAAATTTC+CGG | 0.209819 | 4_3:-54519607 | Msa0648100:CDS |
| TACTGAAATTATAGCATATA+TGG | 0.245896 | 4_3:+54515413 | None:intergenic |
| TCTTAATCCATTTCCCTTGA+TGG | 0.258105 | 4_3:-54521260 | Msa0648100:five_prime_UTR |
| AATGCAACATCTATTAATAT+TGG | 0.258636 | 4_3:-54518258 | Msa0648100:CDS |
| GTTGGGATATAATCAAAATT+TGG | 0.269527 | 4_3:-54515632 | Msa0648100:three_prime_UTR |
| AAATTCAAAATATTATCTTT+TGG | 0.282698 | 4_3:+54515468 | None:intergenic |
| TTGGAATCAGCTAATTGAAT+TGG | 0.290272 | 4_3:-54521221 | Msa0648100:five_prime_UTR |
| TCGTATGTCGCGAAGATTCT+TGG | 0.294194 | 4_3:+54518671 | None:intergenic |
| ACCATTCGAAGTTGTCTAAA+AGG | 0.305278 | 4_3:+54519117 | None:intergenic |
| TTGCATCCTCATTATATATT+AGG | 0.305463 | 4_3:-54516372 | Msa0648100:CDS |
| GAATAGGTCTCAAATAATTA+TGG | 0.317946 | 4_3:+54516463 | None:intergenic |
| CTGAGAAATACAGCTATTAT+AGG | 0.323696 | 4_3:-54516074 | Msa0648100:CDS |
| GGTTTGTTTGGGGTTTGATA+TGG | 0.324035 | 4_3:-54521163 | Msa0648100:CDS |
| GACAATGAGGCGTGAGCTTT+CGG | 0.325927 | 4_3:-54516900 | Msa0648100:CDS |
| CAGCTAATTGAATTGGGAAC+TGG | 0.333345 | 4_3:-54521214 | Msa0648100:five_prime_UTR |
| TCAAAGGTTGGAACTTTGTT+TGG | 0.339281 | 4_3:-54521127 | Msa0648100:CDS |
| AGATGCAATACCAGATGATA+TGG | 0.346387 | 4_3:+54518884 | None:intergenic |
| TTTGCAAGTCATGCTGGCTT+TGG | 0.352404 | 4_3:+54521564 | None:intergenic |
| GAGGATTGTGTTTGGTTTGT+TGG | 0.357357 | 4_3:-54521076 | Msa0648100:CDS |
| CCGTTGGTTCATTCCTCATC+AGG | 0.359239 | 4_3:-54516196 | Msa0648100:intron |
| TGGAACTTTGTTTGGTTAAG+AGG | 0.359266 | 4_3:-54521119 | Msa0648100:CDS |
| AAATAGAAGGTGTATATATA+TGG | 0.361668 | 4_3:-54519140 | Msa0648100:CDS |
| TGCAAGTTCTTCTGTTGATT+CGG | 0.367604 | 4_3:-54518095 | Msa0648100:CDS |
| TTCCAGTAGTTGACGAGGTT+TGG | 0.374390 | 4_3:+54521528 | None:intergenic |
| TCAGAGCTGGTGTGTTTGTT+TGG | 0.374517 | 4_3:-54516274 | Msa0648100:CDS |
| TCTTCTGTTGATTCGGCAAA+TGG | 0.378840 | 4_3:-54518088 | Msa0648100:CDS |
| GGAGCGGGCGCCGACATGTT+GGG | 0.384635 | 4_3:+54515814 | None:intergenic |
| ACCAAAATTATATTTGAGTT+GGG | 0.388588 | 4_3:+54515736 | None:intergenic |
| CTTAATCCATTTCCCTTGAT+GGG | 0.391286 | 4_3:-54521259 | Msa0648100:five_prime_UTR |
| TCAAAACCCATCAAGGGAAA+TGG | 0.392982 | 4_3:+54521253 | None:intergenic |
| GGGAGCGGGCGCCGACATGT+TGG | 0.397562 | 4_3:+54515813 | None:intergenic |
| TCTATGCGCAAGAAGTTGTT+AGG | 0.397790 | 4_3:+54516303 | None:intergenic |
| CGCAGCTCCTTTGCATGGCA+TGG | 0.398060 | 4_3:-54518530 | Msa0648100:intron |
| CACCAAACCTCGTCAACTAC+TGG | 0.400859 | 4_3:-54521530 | Msa0648100:five_prime_UTR |
| GAGTATACAAGAAGCAGAAT+AGG | 0.403679 | 4_3:+54516447 | None:intergenic |
| TGAGATATCTCCTTGCCATT+TGG | 0.404010 | 4_3:-54516961 | Msa0648100:CDS |
| TTCGAAATGTTAATATCAAT+AGG | 0.412962 | 4_3:-54515773 | Msa0648100:three_prime_UTR |
| GATGTTGCATTTAATTGTAA+TGG | 0.416088 | 4_3:+54518270 | None:intergenic |
| TGGAATCAGCTAATTGAATT+GGG | 0.420515 | 4_3:-54521220 | Msa0648100:five_prime_UTR |
| AAGGTTTCAATAATAATGAT+TGG | 0.422296 | 4_3:-54517869 | Msa0648100:CDS |
| TTGACAACGAATACAATGTT+GGG | 0.426120 | 4_3:-54519176 | Msa0648100:CDS |
| CTATTATAGGAGGTCTTCTC+AGG | 0.426465 | 4_3:-54516061 | Msa0648100:CDS |
| AAATGGATTAAGAAAACAAA+AGG | 0.427880 | 4_3:+54521270 | None:intergenic |
| TACCAAAATTATATTTGAGT+TGG | 0.435271 | 4_3:+54515735 | None:intergenic |
| GAAGATATCCACTGAAAGGC+AGG | 0.437048 | 4_3:+54515441 | None:intergenic |
| ACACTGGCTGTTTACAAAGA+TGG | 0.438085 | 4_3:-54515857 | Msa0648100:CDS |
| AGTACACCCACAAAGATAAC+TGG | 0.442208 | 4_3:-54519543 | Msa0648100:CDS |
| TTTGAGTAACGGTGAAGGTT+GGG | 0.444850 | 4_3:-54516924 | Msa0648100:CDS |
| TTTGGGGTTTGATATGGTTG+AGG | 0.453327 | 4_3:-54521157 | Msa0648100:CDS |
| TTTATCCAATCCATATCATC+TGG | 0.453904 | 4_3:-54518894 | Msa0648100:intron |
| CTCTCCGCAGCTCCTTTGCA+TGG | 0.456334 | 4_3:-54518535 | Msa0648100:intron |
| CAAACACACCAGCTCTGATC+TGG | 0.457199 | 4_3:+54516279 | None:intergenic |
| GATTGGTCAGCAAGCTATAG+TGG | 0.462232 | 4_3:-54517852 | Msa0648100:CDS |
| TGAGGGACAAAACTGGTTCA+TGG | 0.462311 | 4_3:-54521011 | Msa0648100:CDS |
| GTGTTGTTTGCAAGTCATGC+TGG | 0.463794 | 4_3:+54521558 | None:intergenic |
| AACAAAAGGGTTGCTTCAAA+AGG | 0.464377 | 4_3:+54521284 | None:intergenic |
| ATAAAATTCAAAACCCATCA+AGG | 0.472808 | 4_3:+54521246 | None:intergenic |
| TGATCGCGGCGTGAGATCAA+TGG | 0.473644 | 4_3:+54515999 | None:intergenic |
| GGTGCCCAAATCAAAATAGA+AGG | 0.476304 | 4_3:-54519153 | Msa0648100:CDS |
| AGCAGTGAACTATACCTTGA+TGG | 0.476566 | 4_3:-54518220 | Msa0648100:intron |
| GGCTGGTCTCAGACCATTGA+GGG | 0.476691 | 4_3:-54521028 | Msa0648100:CDS |
| AGACCATTGAGGGACAAAAC+TGG | 0.478152 | 4_3:-54521018 | Msa0648100:CDS |
| TTGTTTCTTAGTCCTGTGGC+TGG | 0.482694 | 4_3:-54521045 | Msa0648100:CDS |
| CTATAATAGCTGTATTTCTC+AGG | 0.483761 | 4_3:+54516075 | None:intergenic |
| CTATTCATGCAGGTGGGAGC+GGG | 0.487009 | 4_3:+54515799 | None:intergenic |
| TCTATTCATGCAGGTGGGAG+CGG | 0.493082 | 4_3:+54515798 | None:intergenic |
| CAATACCAGATGATATGGAT+TGG | 0.498457 | 4_3:+54518889 | None:intergenic |
| AGGCCGACTTGCTTTCCAAA+TGG | 0.501864 | 4_3:+54516946 | None:intergenic |
| GAGGGAGGGTTGAATCAAGA+TGG | 0.501959 | 4_3:-54518926 | Msa0648100:CDS |
| CTTTGAGTAACGGTGAAGGT+TGG | 0.502166 | 4_3:-54516925 | Msa0648100:CDS |
| TGTACACCAGTTATCTTTGT+GGG | 0.502285 | 4_3:+54519537 | None:intergenic |
| GAGGGACAAAACTGGTTCAT+GGG | 0.507415 | 4_3:-54521010 | Msa0648100:CDS |
| TTTCGAAAATCTATTCATGC+AGG | 0.509474 | 4_3:+54515789 | None:intergenic |
| ATGTACACCAGTTATCTTTG+TGG | 0.511877 | 4_3:+54519536 | None:intergenic |
| AGCTAATTGAATTGGGAACT+GGG | 0.513873 | 4_3:-54521213 | Msa0648100:five_prime_UTR |
| AACTTCGAATGGTAGCCAAC+AGG | 0.513880 | 4_3:-54519107 | Msa0648100:intron |
| TTCAGCACAAAGCTGAAATA+CGG | 0.516083 | 4_3:-54515598 | Msa0648100:three_prime_UTR |
| CTCCTTCTTCAGCATTACCT+CGG | 0.517795 | 4_3:-54516222 | Msa0648100:CDS |
| CGGAAATTTAGAAGAGCCAT+TGG | 0.518059 | 4_3:+54519608 | None:intergenic |
| AGCATTACCTCGGCTCCCGT+TGG | 0.520090 | 4_3:-54516212 | Msa0648100:CDS |
| CTGACTGCAGGAATACTAGT+TGG | 0.525331 | 4_3:-54517806 | Msa0648100:intron |
| ACTTTGTTTGGTTAAGAGGA+AGG | 0.529791 | 4_3:-54521115 | Msa0648100:CDS |
| CGAAAATCTATTCATGCAGG+TGG | 0.532542 | 4_3:+54515792 | None:intergenic |
| TGTCTTGTACATCTGACTGC+AGG | 0.537968 | 4_3:-54517818 | Msa0648100:CDS |
| TATACGAGAACTTACAGAAA+CGG | 0.540778 | 4_3:+54516867 | None:intergenic |
| AAGATGGATGGATATAAAGA+TGG | 0.541854 | 4_3:-54515841 | Msa0648100:CDS |
| TGAGGTTGAAGCTCAAAGGT+TGG | 0.542993 | 4_3:-54521139 | Msa0648100:CDS |
| GGAAAAGATGAAAGCGACAT+AGG | 0.545326 | 4_3:-54520085 | Msa0648100:CDS |
| TTTGACAACGAATACAATGT+TGG | 0.545761 | 4_3:-54519177 | Msa0648100:CDS |
| GCGTGAATCGCGAATAACAT+TGG | 0.548513 | 4_3:+54516401 | None:intergenic |
| TTTCAGACATGGTTTGTTTG+GGG | 0.551580 | 4_3:-54521173 | Msa0648100:exon |
| AGCCGAGGTAATGCTGAAGA+AGG | 0.552624 | 4_3:+54516220 | None:intergenic |
| CGAAATTGGCTTCAACAACA+AGG | 0.555385 | 4_3:+54521382 | None:intergenic |
| TGGCTGGTCTCAGACCATTG+AGG | 0.556316 | 4_3:-54521029 | Msa0648100:CDS |
| CGCTTGTCATCGTCAAAACA+TGG | 0.564678 | 4_3:-54518469 | Msa0648100:intron |
| AATGGATTAAGAAAACAAAA+GGG | 0.564697 | 4_3:+54521271 | None:intergenic |
| AACTGGTTCATGGGGTGACG+AGG | 0.565132 | 4_3:-54521001 | Msa0648100:intron |
| GACTTGCTTTCCAAATGGCA+AGG | 0.569481 | 4_3:+54516951 | None:intergenic |
| TATTAGGCATCACCGTTACT+CGG | 0.569856 | 4_3:-54516356 | Msa0648100:CDS |
| TCTGTTGTTTCTTAGTCCTG+TGG | 0.569867 | 4_3:-54521049 | Msa0648100:CDS |
| TAACGTTGAAATTTCAGCAC+GGG | 0.570846 | 4_3:-54518497 | Msa0648100:CDS |
| TGGTTGAGGTTGAAGCTCAA+AGG | 0.571090 | 4_3:-54521143 | Msa0648100:CDS |
| AATATATAATGAGGATGCAA+TGG | 0.571419 | 4_3:+54516375 | None:intergenic |
| ATTTCATCCCTGCCTTTCAG+TGG | 0.572326 | 4_3:-54515449 | Msa0648100:three_prime_UTR |
| GCAAGTCGGCCTTTGAGTAA+CGG | 0.579479 | 4_3:-54516935 | Msa0648100:CDS |
| AGAAATACAGCTATTATAGG+AGG | 0.580639 | 4_3:-54516071 | Msa0648100:CDS |
| GGATACAAAGGTAACCATCA+AGG | 0.583380 | 4_3:+54518206 | None:intergenic |
| GTGATGCCTAATATATAATG+AGG | 0.587706 | 4_3:+54516366 | None:intergenic |
| TGGCTGTTTACAAAGATGGA+TGG | 0.588478 | 4_3:-54515853 | Msa0648100:CDS |
| CTGATGAGGAATGAACCAAC+GGG | 0.590196 | 4_3:+54516197 | None:intergenic |
| GCCGCGATCAAATGATTGCA+TGG | 0.591420 | 4_3:-54515986 | Msa0648100:intron |
| CAACCTTCACCGTTACTCAA+AGG | 0.592696 | 4_3:+54516926 | None:intergenic |
| AAAATTATATTTGAGTTGGG+AGG | 0.594018 | 4_3:+54515739 | None:intergenic |
| AATGGTCTGAGACCAGCCAC+AGG | 0.595988 | 4_3:+54521033 | None:intergenic |
| GCATAGAACCAGATCAGAGC+TGG | 0.597398 | 4_3:-54516287 | Msa0648100:CDS |
| TAAAATTCAAAACCCATCAA+GGG | 0.599989 | 4_3:+54521247 | None:intergenic |
| AATGGTTGAATGCAGGGACG+TGG | 0.600426 | 4_3:-54519647 | Msa0648100:intron |
| GAATGAACCAACGGGAGCCG+AGG | 0.603539 | 4_3:+54516205 | None:intergenic |
| AAGTGAAGATATCCACTGAA+AGG | 0.606313 | 4_3:+54515437 | None:intergenic |
| CGGCCTTTGAGTAACGGTGA+AGG | 0.608981 | 4_3:-54516929 | Msa0648100:CDS |
| GAGTTAGGCCCAACCTGATG+AGG | 0.609089 | 4_3:+54516183 | None:intergenic |
| GTGAAGGTTGGGAGACAATG+AGG | 0.611990 | 4_3:-54516913 | Msa0648100:CDS |
| AGTCCGTCTGTGGATGACGA+TGG | 0.615922 | 4_3:-54518306 | Msa0648100:CDS |
| AACTGGTGTACATTATGTGC+AGG | 0.617157 | 4_3:-54519526 | Msa0648100:intron |
| TGGGATTGCTAGCCGAGTAA+CGG | 0.619926 | 4_3:+54516344 | None:intergenic |
| TTTGCAGCGGAAAAGAGGGA+GGG | 0.626633 | 4_3:-54518940 | Msa0648100:intron |
| ATAACATTGGTGATTATCTG+AGG | 0.627178 | 4_3:+54516414 | None:intergenic |
| CCTGATGAGGAATGAACCAA+CGG | 0.627200 | 4_3:+54516196 | None:intergenic |
| GAAAATCTATTCATGCAGGT+GGG | 0.635768 | 4_3:+54515793 | None:intergenic |
| ATCTTTGTAAACAGCCAGTG+TGG | 0.635865 | 4_3:+54515859 | None:intergenic |
| TTGCCATTTGGAAAGCAAGT+CGG | 0.637631 | 4_3:-54516949 | Msa0648100:CDS |
| CATGCAAATAACACAGTCCG+TGG | 0.639959 | 4_3:+54516026 | None:intergenic |
| AAGATATCCACTGAAAGGCA+GGG | 0.644005 | 4_3:+54515442 | None:intergenic |
| AGATGGAGTGCCCAACATGT+CGG | 0.646036 | 4_3:-54515824 | Msa0648100:CDS |
| TCAGGATACAAATCATGCCA+CGG | 0.646858 | 4_3:-54516043 | Msa0648100:CDS |
| AGGGACAAAACTGGTTCATG+GGG | 0.650178 | 4_3:-54521009 | Msa0648100:CDS |
| GGTTGCAAAAGCATTGAACA+AGG | 0.650400 | 4_3:+54517024 | None:intergenic |
| ATTGATGGAAAGTCCGTCTG+TGG | 0.650880 | 4_3:-54518316 | Msa0648100:CDS |
| TGACAACGAATACAATGTTG+GGG | 0.655141 | 4_3:-54519175 | Msa0648100:CDS |
| TCTCCATCGTCATCCACAGA+CGG | 0.662192 | 4_3:+54518303 | None:intergenic |
| AACTACAAACTTGAAGAATG+CGG | 0.663491 | 4_3:+54517000 | None:intergenic |
| AATCTTCGCGACATACGATG+TGG | 0.666542 | 4_3:-54518666 | Msa0648100:CDS |
| AATATAACTGGAACTTACAG+AGG | 0.666924 | 4_3:-54520046 | Msa0648100:intron |
| ATTCGTTGTCAAACACATCG+TGG | 0.667953 | 4_3:+54519187 | None:intergenic |
| GTAACGTTGAAATTTCAGCA+CGG | 0.682539 | 4_3:-54518498 | Msa0648100:CDS |
| GACAACGAATACAATGTTGG+GGG | 0.699520 | 4_3:-54519174 | Msa0648100:CDS |
| ACCATGCAATCATTTGATCG+CGG | 0.704135 | 4_3:+54515985 | None:intergenic |
| TACAAACTTGAAGAATGCGG+CGG | 0.707572 | 4_3:+54517003 | None:intergenic |
| ATGCTGAAGAAGGAGAATTG+CGG | 0.740659 | 4_3:+54516230 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTATTGGATTA+AGG | + | chr4_3:54515490-54515509 | None:intergenic | 10.0% |
| !! | TTAAATATAAATCCTTATTA+AGG | + | chr4_3:54518543-54518562 | None:intergenic | 10.0% |
| !! | AATAAGGATTTATATTTAAA+TGG | - | chr4_3:54518544-54518563 | Msa0648100:intron | 10.0% |
| !!! | TTTTTATATTTTGTAACAAA+CGG | - | chr4_3:54519560-54519579 | Msa0648100:CDS | 10.0% |
| !!! | AAATTCAAAATATTATCTTT+TGG | + | chr4_3:54521500-54521519 | None:intergenic | 10.0% |
| !! | ATTAAGGAAAAAACAAAAAA+TGG | + | chr4_3:54515474-54515493 | None:intergenic | 15.0% |
| !! | ACTGAAAAAGAAAAAAAAAA+GGG | + | chr4_3:54516603-54516622 | None:intergenic | 15.0% |
| !! | AACTGAAAAAGAAAAAAAAA+AGG | + | chr4_3:54516604-54516623 | None:intergenic | 15.0% |
| !!! | TTGTTCAATAAGTTTTTTTA+TGG | - | chr4_3:54517295-54517314 | Msa0648100:intron | 15.0% |
| !! | TATATAATATCTAATGTACT+GGG | - | chr4_3:54517980-54517999 | Msa0648100:intron | 15.0% |
| !!! | GTGGAATTTAAAATAAAATT+TGG | + | chr4_3:54518937-54518956 | None:intergenic | 15.0% |
| !! | AAAACAAAAAATGGAATTGT+GGG | + | chr4_3:54515465-54515484 | None:intergenic | 20.0% |
| !! | AAAAACAAAAAATGGAATTG+TGG | + | chr4_3:54515466-54515485 | None:intergenic | 20.0% |
| !!! | AATGGATTAAGAAAACAAAA+GGG | + | chr4_3:54515697-54515716 | None:intergenic | 20.0% |
| !!! | AAATGGATTAAGAAAACAAA+AGG | + | chr4_3:54515698-54515717 | None:intergenic | 20.0% |
| !!! | TATTGTTAGTAATGTTGTTT+TGG | - | chr4_3:54516097-54516116 | Msa0648100:intron | 20.0% |
| !! | TAGAATAAAACAAAACAATG+TGG | - | chr4_3:54516244-54516263 | Msa0648100:CDS | 20.0% |
| !! | AGATAGGTTATAATATCAAT+AGG | - | chr4_3:54516307-54516326 | Msa0648100:CDS | 20.0% |
| !! | TAAAATTCACTTCATCAAAA+GGG | + | chr4_3:54516485-54516504 | None:intergenic | 20.0% |
| !! | CTGAAAAAGAAAAAAAAAAG+GGG | + | chr4_3:54516602-54516621 | None:intergenic | 20.0% |
| !!! | AAAAGAAAATTAGCTCTTTT+AGG | - | chr4_3:54516683-54516702 | Msa0648100:intron | 20.0% |
| !!! | TTACATTCATTTTCTTGTAT+TGG | - | chr4_3:54516830-54516849 | Msa0648100:intron | 20.0% |
| !!! | CAATAAGTTTTTTTATGGAA+TGG | - | chr4_3:54517300-54517319 | Msa0648100:intron | 20.0% |
| !! | AACAAATAATAAAGCAAAAC+AGG | + | chr4_3:54517527-54517546 | None:intergenic | 20.0% |
| !! | GTAATGAAAAAATAAGTTCT+TGG | + | chr4_3:54517602-54517621 | None:intergenic | 20.0% |
| !!! | AAATAGAAGGTGTATATATA+TGG | - | chr4_3:54517825-54517844 | Msa0648100:CDS | 20.0% |
| !! | GTATATAATATCTAATGTAC+TGG | - | chr4_3:54517979-54517998 | Msa0648100:intron | 20.0% |
| !! | AATGCAACATCTATTAATAT+TGG | - | chr4_3:54518707-54518726 | Msa0648100:intron | 20.0% |
| !! | GAAACCTAATATATACATTA+AGG | + | chr4_3:54518845-54518864 | None:intergenic | 20.0% |
| !! | AAGGTTTCAATAATAATGAT+TGG | - | chr4_3:54519096-54519115 | Msa0648100:intron | 20.0% |
| !! | TTCAAATTAATTGCAGTATA+CGG | - | chr4_3:54519826-54519845 | Msa0648100:intron | 20.0% |
| !! | GTTAAACAGTTTAAGAAATA+AGG | + | chr4_3:54520431-54520450 | None:intergenic | 20.0% |
| !! | TTCGAAATGTTAATATCAAT+AGG | - | chr4_3:54521192-54521211 | Msa0648100:five_prime_UTR | 20.0% |
| !!! | ACCAAAATTATATTTGAGTT+GGG | + | chr4_3:54521232-54521251 | None:intergenic | 20.0% |
| !! | TACCAAAATTATATTTGAGT+TGG | + | chr4_3:54521233-54521252 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTAACTTGGTAG+TGG | - | chr4_3:54521448-54521467 | Msa0648100:five_prime_UTR | 20.0% |
| !! | TACTGAAATTATAGCATATA+TGG | + | chr4_3:54521555-54521574 | None:intergenic | 20.0% |
| !!! | GTACAAAGTTGTTTTCAATT+TGG | - | chr4_3:54515553-54515572 | Msa0648100:three_prime_UTR | 25.0% |
| ! | CTAGAGAAAAATAACGAAAT+TGG | + | chr4_3:54515600-54515619 | None:intergenic | 25.0% |
| ! | TAAAATTCAAAACCCATCAA+GGG | + | chr4_3:54515721-54515740 | None:intergenic | 25.0% |
| ! | ATAAAATTCAAAACCCATCA+AGG | + | chr4_3:54515722-54515741 | None:intergenic | 25.0% |
| !!! | TGGGTTTTGAATTTTATTGT+TGG | - | chr4_3:54515725-54515744 | Msa0648100:intron | 25.0% |
| !!! | GTGTTTTTACTTTATTGTTG+TGG | - | chr4_3:54516036-54516055 | Msa0648100:CDS | 25.0% |
| ! | AATGCAAATCAAAATACAAC+TGG | + | chr4_3:54516143-54516162 | None:intergenic | 25.0% |
| !!! | GTTGTATTTTGATTTGCATT+AGG | - | chr4_3:54516143-54516162 | Msa0648100:intron | 25.0% |
| !! | ATTTTGTCCTGTTGTAAATT+TGG | - | chr4_3:54516191-54516210 | Msa0648100:intron | 25.0% |
| !! | TTTTGTCCTGTTGTAAATTT+GGG | - | chr4_3:54516192-54516211 | Msa0648100:intron | 25.0% |
| ! | AAATTTGGGAACATGATATT+TGG | - | chr4_3:54516206-54516225 | Msa0648100:CDS | 25.0% |
| ! | TAAAACAAAACAATGTGGTT+TGG | - | chr4_3:54516249-54516268 | Msa0648100:CDS | 25.0% |
| !! | AGTACTAGAGTATTCTTTAT+CGG | - | chr4_3:54516410-54516429 | Msa0648100:CDS | 25.0% |
| ! | AAAATGTACTTAGGTGTAAT+TGG | - | chr4_3:54516444-54516463 | Msa0648100:CDS | 25.0% |
| ! | CTAAAATTCACTTCATCAAA+AGG | + | chr4_3:54516486-54516505 | None:intergenic | 25.0% |
| !! | GCTAATTTTCTTTTCATTTG+TGG | + | chr4_3:54516677-54516696 | None:intergenic | 25.0% |
| ! | AACCACATATCAACATTAAA+TGG | + | chr4_3:54516710-54516729 | None:intergenic | 25.0% |
| ! | ATGTTGATATGTGGTTTAAA+TGG | - | chr4_3:54516714-54516733 | Msa0648100:intron | 25.0% |
| !! | TTTTGGTAAAACAAAATCCT+TGG | + | chr4_3:54516747-54516766 | None:intergenic | 25.0% |
| !!! | CAAACATTAAATATCGGTTT+AGG | + | chr4_3:54516803-54516822 | None:intergenic | 25.0% |
| ! | AAACCGATATTTAATGTTTG+TGG | - | chr4_3:54516803-54516822 | Msa0648100:intron | 25.0% |
| ! | TTGCCACAAACATTAAATAT+CGG | + | chr4_3:54516809-54516828 | None:intergenic | 25.0% |
| !!! | TTTTTTCAGTGGATTTTTTC+TGG | - | chr4_3:54516859-54516878 | Msa0648100:intron | 25.0% |
| ! | GTTATATTCCATTGTGAAAA+TGG | + | chr4_3:54516907-54516926 | None:intergenic | 25.0% |
| !! | TTTTCACAATGGAATATAAC+TGG | - | chr4_3:54516907-54516926 | Msa0648100:CDS | 25.0% |
| !! | GTATTCTTATATTTTCAGTC+TGG | - | chr4_3:54516945-54516964 | Msa0648100:CDS | 25.0% |
| ! | TAAGTAACCATTTATACAAC+TGG | + | chr4_3:54516990-54517009 | None:intergenic | 25.0% |
| ! | CATGATTTGATGTCTTATAA+GGG | - | chr4_3:54517044-54517063 | Msa0648100:intron | 25.0% |
| ! | ATGATTTGATGTCTTATAAG+GGG | - | chr4_3:54517045-54517064 | Msa0648100:intron | 25.0% |
| !!! | AAGTTTTTAGATACTACCAA+TGG | - | chr4_3:54517341-54517360 | Msa0648100:intron | 25.0% |
| !!! | TCTTTTTCGTGTTTTTATCA+GGG | - | chr4_3:54517743-54517762 | Msa0648100:intron | 25.0% |
| !!! | TACACCTTCTATTTTGATTT+GGG | + | chr4_3:54517819-54517838 | None:intergenic | 25.0% |
| !!! | ATACACCTTCTATTTTGATT+TGG | + | chr4_3:54517820-54517839 | None:intergenic | 25.0% |
| !!! | ATTCTATGATCTGTTACTTT+TGG | - | chr4_3:54518188-54518207 | Msa0648100:intron | 25.0% |
| ! | ATGCTTAGTTGCTATATATT+TGG | - | chr4_3:54518231-54518250 | Msa0648100:CDS | 25.0% |
| !! | TAATTTTCTTCTTCCCTTTT+TGG | - | chr4_3:54518368-54518387 | Msa0648100:intron | 25.0% |
| ! | TTAAACGCTTTCTTATAGAT+GGG | - | chr4_3:54518600-54518619 | Msa0648100:intron | 25.0% |
| ! | GATGTTGCATTTAATTGTAA+TGG | + | chr4_3:54518698-54518717 | None:intergenic | 25.0% |
| ! | GTTAAAGAGAATATTGATGA+TGG | + | chr4_3:54518787-54518806 | None:intergenic | 25.0% |
| ! | AGCTCCTTAATGTATATATT+AGG | - | chr4_3:54518838-54518857 | Msa0648100:intron | 25.0% |
| !! | CATTGATTAAATCTATAACG+TGG | + | chr4_3:54518956-54518975 | None:intergenic | 25.0% |
| ! | CACGTTATAGATTTAATCAA+TGG | - | chr4_3:54518954-54518973 | Msa0648100:intron | 25.0% |
| ! | CAATATTTGAATGAATATGC+TGG | - | chr4_3:54518994-54519013 | Msa0648100:intron | 25.0% |
| ! | TATGATTCTTATATAACTGC+AGG | - | chr4_3:54519065-54519084 | Msa0648100:intron | 25.0% |
| ! | ATGATTCTTATATAACTGCA+GGG | - | chr4_3:54519066-54519085 | Msa0648100:intron | 25.0% |
| ! | AAAGAAAAAGAAGTAACAAG+CGG | + | chr4_3:54519281-54519300 | None:intergenic | 25.0% |
| !! | TAAAAAAGTGATTTTCATCG+TGG | - | chr4_3:54519450-54519469 | Msa0648100:intron | 25.0% |
| !! | TACATAATAGGATCTAGAAT+AGG | + | chr4_3:54519610-54519629 | None:intergenic | 25.0% |
| ! | AATTGGATGTTGTACATAAT+AGG | + | chr4_3:54519622-54519641 | None:intergenic | 25.0% |
| ! | GTAAATTTCTAATGTGTTCT+GGG | + | chr4_3:54519645-54519664 | None:intergenic | 25.0% |
| ! | TGTAAATTTCTAATGTGTTC+TGG | + | chr4_3:54519646-54519665 | None:intergenic | 25.0% |
| ! | TCAAAAAAGTCAATTCAAAC+AGG | + | chr4_3:54520201-54520220 | None:intergenic | 25.0% |
| !!! | ACTTTTTTGAGCTTATCTAT+TGG | - | chr4_3:54520211-54520230 | Msa0648100:intron | 25.0% |
| !!! | CTTTTTTGAGCTTATCTATT+GGG | - | chr4_3:54520212-54520231 | Msa0648100:intron | 25.0% |
| ! | TAGTTTATACATAAGCACTT+AGG | - | chr4_3:54520376-54520395 | Msa0648100:intron | 25.0% |
| ! | GAATAGGTCTCAAATAATTA+TGG | + | chr4_3:54520505-54520524 | None:intergenic | 25.0% |
| ! | AATATATAATGAGGATGCAA+TGG | + | chr4_3:54520593-54520612 | None:intergenic | 25.0% |
| ! | TTGCATCCTCATTATATATT+AGG | - | chr4_3:54520593-54520612 | Msa0648100:intron | 25.0% |
| !!! | GTTTGTTTGGTTTTATTTAC+TGG | - | chr4_3:54520704-54520723 | Msa0648100:intron | 25.0% |
| !!! | AAAATTATATTTGAGTTGGG+AGG | + | chr4_3:54521229-54521248 | None:intergenic | 25.0% |
| !! | TCCCAACTCAAATATAATTT+TGG | - | chr4_3:54521228-54521247 | Msa0648100:five_prime_UTR | 25.0% |
| !! | TTGGTAATATTCTTACGAAA+AGG | - | chr4_3:54521247-54521266 | Msa0648100:five_prime_UTR | 25.0% |
| ! | GTTGGGATATAATCAAAATT+TGG | - | chr4_3:54521333-54521352 | Msa0648100:five_prime_UTR | 25.0% |
| TTGGAATCAGCTAATTGAAT+TGG | - | chr4_3:54515744-54515763 | Msa0648100:three_prime_UTR | 30.0% | |
| TGGAATCAGCTAATTGAATT+GGG | - | chr4_3:54515745-54515764 | Msa0648100:three_prime_UTR | 30.0% | |
| ! | CATAACATTCTTTTCAGACA+TGG | - | chr4_3:54515781-54515800 | Msa0648100:three_prime_UTR | 30.0% |
| !!! | TTTTCAGACATGGTTTGTTT+GGG | - | chr4_3:54515791-54515810 | Msa0648100:exon | 30.0% |
| CTTTATTGTTGTGGTAATTG+TGG | - | chr4_3:54516045-54516064 | Msa0648100:CDS | 30.0% | |
| !!! | AGAATCAGGTTGAATTTTAG+TGG | - | chr4_3:54516376-54516395 | Msa0648100:CDS | 30.0% |
| !!! | AGGTTGAATTTTAGTGGATT+AGG | - | chr4_3:54516382-54516401 | Msa0648100:CDS | 30.0% |
| TCCTATGTCAAAATGTACTT+AGG | - | chr4_3:54516435-54516454 | Msa0648100:CDS | 30.0% | |
| !! | ACCTAAGTACATTTTGACAT+AGG | + | chr4_3:54516439-54516458 | None:intergenic | 30.0% |
| GACCATTTAATGTTGATATG+TGG | - | chr4_3:54516705-54516724 | Msa0648100:intron | 30.0% | |
| AATATAACTGGAACTTACAG+AGG | - | chr4_3:54516919-54516938 | Msa0648100:CDS | 30.0% | |
| TCAACAACCAGTTGTATAAA+TGG | - | chr4_3:54516980-54516999 | Msa0648100:CDS | 30.0% | |
| GCATGATTTGATGTCTTATA+AGG | - | chr4_3:54517043-54517062 | Msa0648100:intron | 30.0% | |
| TGATTTGATGTCTTATAAGG+GGG | - | chr4_3:54517046-54517065 | Msa0648100:intron | 30.0% | |
| TTATAAGGGGGATATATGAT+TGG | - | chr4_3:54517058-54517077 | Msa0648100:intron | 30.0% | |
| GAATAAACTTAGAGCCAATT+TGG | - | chr4_3:54517082-54517101 | Msa0648100:intron | 30.0% | |
| GTTGAAAAGTTTGTCCAAAT+TGG | + | chr4_3:54517099-54517118 | None:intergenic | 30.0% | |
| ! | ACTTTTCAACAAGCACTAAT+AGG | - | chr4_3:54517109-54517128 | Msa0648100:intron | 30.0% |
| ! | GCACTTCTGAAAAAAAATTG+AGG | + | chr4_3:54517218-54517237 | None:intergenic | 30.0% |
| !! | CCATTTATTTTTCTGATGTC+CGG | + | chr4_3:54517380-54517399 | None:intergenic | 30.0% |
| AATTTCACTTCCTAAGCAAT+TGG | - | chr4_3:54517565-54517584 | Msa0648100:intron | 30.0% | |
| !!! | TAGAGAGCTTTTTTTTCTGT+TGG | + | chr4_3:54517635-54517654 | None:intergenic | 30.0% |
| !! | CTCTTTTTCGTGTTTTTATC+AGG | - | chr4_3:54517742-54517761 | Msa0648100:intron | 30.0% |
| !! | CTTTTTCGTGTTTTTATCAG+GGG | - | chr4_3:54517744-54517763 | Msa0648100:intron | 30.0% |
| !! | TTTTTCGTGTTTTTATCAGG+GGG | - | chr4_3:54517745-54517764 | Msa0648100:intron | 30.0% |
| TTTGACAACGAATACAATGT+TGG | - | chr4_3:54517788-54517807 | Msa0648100:intron | 30.0% | |
| TTGACAACGAATACAATGTT+GGG | - | chr4_3:54517789-54517808 | Msa0648100:intron | 30.0% | |
| CAAGACATGTAAATGCAATA+AGG | + | chr4_3:54517915-54517934 | None:intergenic | 30.0% | |
| TTTACAACTGAAGTAGAACT+AGG | - | chr4_3:54517954-54517973 | Msa0648100:intron | 30.0% | |
| !! | TTTGTTTTCTTCTTTTGCAG+CGG | - | chr4_3:54518012-54518031 | Msa0648100:intron | 30.0% |
| TTTATCCAATCCATATCATC+TGG | - | chr4_3:54518071-54518090 | Msa0648100:CDS | 30.0% | |
| TAGTTGCTATATATTTGGCT+TGG | - | chr4_3:54518236-54518255 | Msa0648100:CDS | 30.0% | |
| !! | TAAGAAAGCGTTTAACAACT+TGG | + | chr4_3:54518595-54518614 | None:intergenic | 30.0% |
| GTTAAACGCTTTCTTATAGA+TGG | - | chr4_3:54518599-54518618 | Msa0648100:intron | 30.0% | |
| TAAACGCTTTCTTATAGATG+GGG | - | chr4_3:54518601-54518620 | Msa0648100:intron | 30.0% | |
| !! | AAGAGAATATTGATGATGGA+AGG | + | chr4_3:54518783-54518802 | None:intergenic | 30.0% |
| TGATTCTTATATAACTGCAG+GGG | - | chr4_3:54519067-54519086 | Msa0648100:intron | 30.0% | |
| AAGTTACAATATGCTTACAC+TGG | + | chr4_3:54519733-54519752 | None:intergenic | 30.0% | |
| ! | GCATATTGTAACTTAGTTTG+CGG | - | chr4_3:54519739-54519758 | Msa0648100:intron | 30.0% |
| AACTACAAACTTGAAGAATG+CGG | + | chr4_3:54519968-54519987 | None:intergenic | 30.0% | |
| TATACGAGAACTTACAGAAA+CGG | + | chr4_3:54520101-54520120 | None:intergenic | 30.0% | |
| AATAAGCATAAAACAGCTTG+CGG | + | chr4_3:54520268-54520287 | None:intergenic | 30.0% | |
| !! | CTTATTTTCATAAGTTCTCC+AGG | - | chr4_3:54520282-54520301 | Msa0648100:intron | 30.0% |
| !! | TGTTTAACTTTTCTTGCAGA+TGG | - | chr4_3:54520443-54520462 | Msa0648100:intron | 30.0% |
| !! | GTTTAACTTTTCTTGCAGAT+GGG | - | chr4_3:54520444-54520463 | Msa0648100:intron | 30.0% |
| ! | TGCTTCTTGTATACTCTTTT+TGG | - | chr4_3:54520525-54520544 | Msa0648100:intron | 30.0% |
| ! | ATAACATTGGTGATTATCTG+AGG | + | chr4_3:54520554-54520573 | None:intergenic | 30.0% |
| GTGATGCCTAATATATAATG+AGG | + | chr4_3:54520602-54520621 | None:intergenic | 30.0% | |
| GACAACCAAAAACGTATAAT+GGG | + | chr4_3:54520643-54520662 | None:intergenic | 30.0% | |
| AAAGTTAGATTGTTGGATGA+AGG | + | chr4_3:54520846-54520865 | None:intergenic | 30.0% | |
| GAAAGACAAAGTTAGATTGT+TGG | + | chr4_3:54520853-54520872 | None:intergenic | 30.0% | |
| CAATCTAACTTTGTCTTTCA+TGG | - | chr4_3:54520854-54520873 | Msa0648100:intron | 30.0% | |
| CTATAATAGCTGTATTTCTC+AGG | + | chr4_3:54520893-54520912 | None:intergenic | 30.0% | |
| CTGAGAAATACAGCTATTAT+AGG | - | chr4_3:54520891-54520910 | Msa0648100:intron | 30.0% | |
| AGAAATACAGCTATTATAGG+AGG | - | chr4_3:54520894-54520913 | Msa0648100:intron | 30.0% | |
| AAGATGGATGGATATAAAGA+TGG | - | chr4_3:54521124-54521143 | Msa0648100:CDS | 30.0% | |
| TTTCGAAAATCTATTCATGC+AGG | + | chr4_3:54521179-54521198 | None:intergenic | 30.0% | |
| ! | CAAGTTTTCTTTCTTTTGCT+TGG | - | chr4_3:54521307-54521326 | Msa0648100:five_prime_UTR | 30.0% |
| AACAAAAGGGTTGCTTCAAA+AGG | + | chr4_3:54515684-54515703 | None:intergenic | 35.0% | |
| TCTTAATCCATTTCCCTTGA+TGG | - | chr4_3:54515705-54515724 | Msa0648100:intron | 35.0% | |
| CTTAATCCATTTCCCTTGAT+GGG | - | chr4_3:54515706-54515725 | Msa0648100:intron | 35.0% | |
| AGCTAATTGAATTGGGAACT+GGG | - | chr4_3:54515752-54515771 | Msa0648100:three_prime_UTR | 35.0% | |
| !!! | CTTTTCAGACATGGTTTGTT+TGG | - | chr4_3:54515790-54515809 | Msa0648100:exon | 35.0% |
| !! | TTTCAGACATGGTTTGTTTG+GGG | - | chr4_3:54515792-54515811 | Msa0648100:exon | 35.0% |
| TCAAAGGTTGGAACTTTGTT+TGG | - | chr4_3:54515838-54515857 | Msa0648100:CDS | 35.0% | |
| ! | TGGAACTTTGTTTGGTTAAG+AGG | - | chr4_3:54515846-54515865 | Msa0648100:CDS | 35.0% |
| ! | ACTTTGTTTGGTTAAGAGGA+AGG | - | chr4_3:54515850-54515869 | Msa0648100:CDS | 35.0% |
| CATGTTCCCAAATTTACAAC+AGG | + | chr4_3:54516201-54516220 | None:intergenic | 35.0% | |
| !! | AAACAATGTGGTTTGGTCAA+AGG | - | chr4_3:54516256-54516275 | Msa0648100:CDS | 35.0% |
| !! | AACAATGTGGTTTGGTCAAA+GGG | - | chr4_3:54516257-54516276 | Msa0648100:CDS | 35.0% |
| ! | CTTTTCTTGAAGAGAGAATC+AGG | - | chr4_3:54516362-54516381 | Msa0648100:CDS | 35.0% |
| TTGAACCTTGAAATTGCATG+AGG | - | chr4_3:54516506-54516525 | Msa0648100:CDS | 35.0% | |
| TGAACCTTGAAATTGCATGA+GGG | - | chr4_3:54516507-54516526 | Msa0648100:intron | 35.0% | |
| !!! | TCTTTTTCAGTTGTGCACAT+TGG | - | chr4_3:54516612-54516631 | Msa0648100:intron | 35.0% |
| GTTTAAATGGAATTCCTCCA+AGG | - | chr4_3:54516727-54516746 | Msa0648100:intron | 35.0% | |
| TGGTAAAACAAAATCCTTGG+AGG | + | chr4_3:54516744-54516763 | None:intergenic | 35.0% | |
| TACATTAGCAGTAGCACTAA+AGG | + | chr4_3:54516776-54516795 | None:intergenic | 35.0% | |
| !!! | ATTGGCATTGCTTTTTTCAG+TGG | - | chr4_3:54516848-54516867 | Msa0648100:intron | 35.0% |
| ! | ACATAGGTCCATTTTCACAA+TGG | - | chr4_3:54516896-54516915 | Msa0648100:CDS | 35.0% |
| TTTATGGAATGGTTGAATGC+AGG | - | chr4_3:54517311-54517330 | Msa0648100:intron | 35.0% | |
| TTATGGAATGGTTGAATGCA+GGG | - | chr4_3:54517312-54517331 | Msa0648100:intron | 35.0% | |
| CAATGGCTCTTCTAAATTTC+CGG | - | chr4_3:54517358-54517377 | Msa0648100:intron | 35.0% | |
| CCGGACATCAGAAAAATAAA+TGG | - | chr4_3:54517377-54517396 | Msa0648100:intron | 35.0% | |
| TGTACACCAGTTATCTTTGT+GGG | + | chr4_3:54517431-54517450 | None:intergenic | 35.0% | |
| ATGTACACCAGTTATCTTTG+TGG | + | chr4_3:54517432-54517451 | None:intergenic | 35.0% | |
| ! | GCTATATAGCTGGTTTCATA+AGG | - | chr4_3:54517473-54517492 | Msa0648100:intron | 35.0% |
| TGACAACGAATACAATGTTG+GGG | - | chr4_3:54517790-54517809 | Msa0648100:intron | 35.0% | |
| ACCATTCGAAGTTGTCTAAA+AGG | + | chr4_3:54517851-54517870 | None:intergenic | 35.0% | |
| ATTTACATGTCTTGCTCTGA+TGG | - | chr4_3:54517921-54517940 | Msa0648100:intron | 35.0% | |
| CAATACCAGATGATATGGAT+TGG | + | chr4_3:54518079-54518098 | None:intergenic | 35.0% | |
| AGATGCAATACCAGATGATA+TGG | + | chr4_3:54518084-54518103 | None:intergenic | 35.0% | |
| CTTGATGCATCATTCATTGT+TGG | - | chr4_3:54518106-54518125 | Msa0648100:CDS | 35.0% | |
| CAACGTGAACAAACCAAAAA+GGG | + | chr4_3:54518384-54518403 | None:intergenic | 35.0% | |
| ACAACGTGAACAAACCAAAA+AGG | + | chr4_3:54518385-54518404 | None:intergenic | 35.0% | |
| GTAACGTTGAAATTTCAGCA+CGG | - | chr4_3:54518467-54518486 | Msa0648100:intron | 35.0% | |
| TAACGTTGAAATTTCAGCAC+GGG | - | chr4_3:54518468-54518487 | Msa0648100:intron | 35.0% | |
| !! | TTGATGATGGAAGGATACAA+AGG | + | chr4_3:54518774-54518793 | None:intergenic | 35.0% |
| CACAGAACAGACAATAATGT+TGG | + | chr4_3:54518816-54518835 | None:intergenic | 35.0% | |
| ! | TGCAAGTTCTTCTGTTGATT+CGG | - | chr4_3:54518870-54518889 | Msa0648100:intron | 35.0% |
| GATTCTTATATAACTGCAGG+GGG | - | chr4_3:54519068-54519087 | Msa0648100:intron | 35.0% | |
| !! | TTCTAATGTGTTCTGGGAAT+TGG | + | chr4_3:54519639-54519658 | None:intergenic | 35.0% |
| GATTGATCTCTTTACACACA+CGG | + | chr4_3:54519693-54519712 | None:intergenic | 35.0% | |
| !! | ATTGTAACTTAGTTTGCGGT+AGG | - | chr4_3:54519743-54519762 | Msa0648100:intron | 35.0% |
| TACTCATTATGTGTTTGCCA+TGG | - | chr4_3:54520165-54520184 | Msa0648100:intron | 35.0% | |
| ACTCATTATGTGTTTGCCAT+GGG | - | chr4_3:54520166-54520185 | Msa0648100:intron | 35.0% | |
| AAACACTTGCGAAACTGTTT+AGG | - | chr4_3:54520237-54520256 | Msa0648100:intron | 35.0% | |
| !! | TTAAGAAATAAGGCACTGGT+TGG | + | chr4_3:54520421-54520440 | None:intergenic | 35.0% |
| CAGTTTAAGAAATAAGGCAC+TGG | + | chr4_3:54520425-54520444 | None:intergenic | 35.0% | |
| GAGTATACAAGAAGCAGAAT+AGG | + | chr4_3:54520521-54520540 | None:intergenic | 35.0% | |
| ! | GCAATCCCATTATACGTTTT+TGG | - | chr4_3:54520635-54520654 | Msa0648100:intron | 35.0% |
| GGACAACCAAAAACGTATAA+TGG | + | chr4_3:54520644-54520663 | None:intergenic | 35.0% | |
| AAGATATCGAGATGAGAGTT+AGG | + | chr4_3:54520800-54520819 | None:intergenic | 35.0% | |
| ATGAAGGCGAGTTAGTAAAA+AGG | + | chr4_3:54520830-54520849 | None:intergenic | 35.0% | |
| GTGTGGAAAAAATGATCACA+AGG | + | chr4_3:54521092-54521111 | None:intergenic | 35.0% | |
| !!! | TGTGATCATTTTTTCCACAC+TGG | - | chr4_3:54521092-54521111 | Msa0648100:CDS | 35.0% |
| GAAAATCTATTCATGCAGGT+GGG | + | chr4_3:54521175-54521194 | None:intergenic | 35.0% | |
| ! | TTTTCTTTCTTTTGCTTGGC+AGG | - | chr4_3:54521311-54521330 | Msa0648100:five_prime_UTR | 35.0% |
| TTCAGCACAAAGCTGAAATA+CGG | - | chr4_3:54521367-54521386 | Msa0648100:five_prime_UTR | 35.0% | |
| AAGTGAAGATATCCACTGAA+AGG | + | chr4_3:54521531-54521550 | None:intergenic | 35.0% | |
| ! | CGAAATTGGCTTCAACAACA+AGG | + | chr4_3:54515586-54515605 | None:intergenic | 40.0% |
| TCAAAACCCATCAAGGGAAA+TGG | + | chr4_3:54515715-54515734 | None:intergenic | 40.0% | |
| CAGCTAATTGAATTGGGAAC+TGG | - | chr4_3:54515751-54515770 | Msa0648100:three_prime_UTR | 40.0% | |
| ! | GGTTTGTTTGGGGTTTGATA+TGG | - | chr4_3:54515802-54515821 | Msa0648100:exon | 40.0% |
| ! | TTTGGGGTTTGATATGGTTG+AGG | - | chr4_3:54515808-54515827 | Msa0648100:CDS | 40.0% |
| ! | AGGAAGTTTGTGTTTTGTCG+AGG | - | chr4_3:54515870-54515889 | Msa0648100:CDS | 40.0% |
| ! | GTTTTGTCGAGGATTGTGTT+TGG | - | chr4_3:54515881-54515900 | Msa0648100:CDS | 40.0% |
| !! | GAGGATTGTGTTTGGTTTGT+TGG | - | chr4_3:54515889-54515908 | Msa0648100:intron | 40.0% |
| !! | TCTGTTGTTTCTTAGTCCTG+TGG | - | chr4_3:54515916-54515935 | Msa0648100:intron | 40.0% |
| TCTACCCTCATGCAATTTCA+AGG | + | chr4_3:54516514-54516533 | None:intergenic | 40.0% | |
| !! | AGCACTAAAGGCATGTCTTT+TGG | + | chr4_3:54516764-54516783 | None:intergenic | 40.0% |
| GGAAAAGATGAAAGCGACAT+AGG | - | chr4_3:54516880-54516899 | Msa0648100:intron | 40.0% | |
| TAACTGGAACTTACAGAGGT+TGG | - | chr4_3:54516923-54516942 | Msa0648100:CDS | 40.0% | |
| CGGAAATTTAGAAGAGCCAT+TGG | + | chr4_3:54517360-54517379 | None:intergenic | 40.0% | |
| AGTACACCCACAAAGATAAC+TGG | - | chr4_3:54517422-54517441 | Msa0648100:intron | 40.0% | |
| AACTGGTGTACATTATGTGC+AGG | - | chr4_3:54517439-54517458 | Msa0648100:intron | 40.0% | |
| GAGATGTTGAGCTATATAGC+TGG | - | chr4_3:54517463-54517482 | Msa0648100:intron | 40.0% | |
| ! | AGCTGGTTTCATAAGGAAGT+TGG | - | chr4_3:54517480-54517499 | Msa0648100:intron | 40.0% |
| GCAAGTAGAACCAATTGCTT+AGG | + | chr4_3:54517578-54517597 | None:intergenic | 40.0% | |
| ATTCGTTGTCAAACACATCG+TGG | + | chr4_3:54517781-54517800 | None:intergenic | 40.0% | |
| GACAACGAATACAATGTTGG+GGG | - | chr4_3:54517791-54517810 | Msa0648100:intron | 40.0% | |
| GGTGCCCAAATCAAAATAGA+AGG | - | chr4_3:54517812-54517831 | Msa0648100:CDS | 40.0% | |
| ! | GCCTTTTAGACAACTTCGAA+TGG | - | chr4_3:54517847-54517866 | Msa0648100:CDS | 40.0% |
| GATGCATATTGTTCACCTGT+TGG | + | chr4_3:54517876-54517895 | None:intergenic | 40.0% | |
| ! | TTCTTTTGCAGCGGAAAAGA+GGG | - | chr4_3:54518021-54518040 | Msa0648100:intron | 40.0% |
| ! | TTTTTCTCCATGCCATGCAA+AGG | + | chr4_3:54518445-54518464 | None:intergenic | 40.0% |
| GAGTTCTCTGAGCCTTAATA+AGG | - | chr4_3:54518528-54518547 | Msa0648100:CDS | 40.0% | |
| ! | CATGATTCTTTTCAGCTGGA+AGG | - | chr4_3:54518626-54518645 | Msa0648100:intron | 40.0% |
| ! | TTTTCAGCTGGAAGGATTGA+TGG | - | chr4_3:54518634-54518653 | Msa0648100:intron | 40.0% |
| AGCAGTGAACTATACCTTGA+TGG | - | chr4_3:54518745-54518764 | Msa0648100:intron | 40.0% | |
| GGATACAAAGGTAACCATCA+AGG | + | chr4_3:54518762-54518781 | None:intergenic | 40.0% | |
| !! | TCTTCTGTTGATTCGGCAAA+TGG | - | chr4_3:54518877-54518896 | Msa0648100:intron | 40.0% |
| !! | CACAGGTGAAAATTTTAGCG+AGG | + | chr4_3:54519249-54519268 | None:intergenic | 40.0% |
| ACAAGCGGAATTTGAATCAC+AGG | + | chr4_3:54519266-54519285 | None:intergenic | 40.0% | |
| ! | TAGGATCTAGAATAGGACAG+AGG | + | chr4_3:54519603-54519622 | None:intergenic | 40.0% |
| AGGTTGTAGGTTCAAAGTCA+TGG | - | chr4_3:54519763-54519782 | Msa0648100:intron | 40.0% | |
| CATTGAACAAGGACTCTACA+GGG | + | chr4_3:54519933-54519952 | None:intergenic | 40.0% | |
| !! | GGTTGCAAAAGCATTGAACA+AGG | + | chr4_3:54519944-54519963 | None:intergenic | 40.0% |
| TACAAACTTGAAGAATGCGG+CGG | + | chr4_3:54519965-54519984 | None:intergenic | 40.0% | |
| TGAGATATCTCCTTGCCATT+TGG | - | chr4_3:54520004-54520023 | Msa0648100:intron | 40.0% | |
| ! | TTGCCATTTGGAAAGCAAGT+CGG | - | chr4_3:54520016-54520035 | Msa0648100:intron | 40.0% |
| TTTGAGTAACGGTGAAGGTT+GGG | - | chr4_3:54520041-54520060 | Msa0648100:intron | 40.0% | |
| CTCATTATGTGTTTGCCATG+GGG | - | chr4_3:54520167-54520186 | Msa0648100:intron | 40.0% | |
| !! | CTGTTTTTCATAAGCTCTCC+TGG | + | chr4_3:54520303-54520322 | None:intergenic | 40.0% |
| ! | TCTTGCAGATGGGATTCTTT+TGG | - | chr4_3:54520454-54520473 | Msa0648100:intron | 40.0% |
| ! | CTTGCAGATGGGATTCTTTT+GGG | - | chr4_3:54520455-54520474 | Msa0648100:intron | 40.0% |
| TATTAGGCATCACCGTTACT+CGG | - | chr4_3:54520609-54520628 | Msa0648100:intron | 40.0% | |
| TCTATGCGCAAGAAGTTGTT+AGG | + | chr4_3:54520665-54520684 | None:intergenic | 40.0% | |
| ATGCTGAAGAAGGAGAATTG+CGG | + | chr4_3:54520738-54520757 | None:intergenic | 40.0% | |
| AAGGCGAGTTAGTAAAAAGG+AGG | + | chr4_3:54520827-54520846 | None:intergenic | 40.0% | |
| CTATTATAGGAGGTCTTCTC+AGG | - | chr4_3:54520904-54520923 | Msa0648100:intron | 40.0% | |
| TCAGGATACAAATCATGCCA+CGG | - | chr4_3:54520922-54520941 | Msa0648100:intron | 40.0% | |
| ACCATGCAATCATTTGATCG+CGG | + | chr4_3:54520983-54521002 | None:intergenic | 40.0% | |
| ACACACCAACTGTTATATGC+AGG | - | chr4_3:54521061-54521080 | Msa0648100:CDS | 40.0% | |
| ATCTTTGTAAACAGCCAGTG+TGG | + | chr4_3:54521109-54521128 | None:intergenic | 40.0% | |
| ! | ACACTGGCTGTTTACAAAGA+TGG | - | chr4_3:54521108-54521127 | Msa0648100:CDS | 40.0% |
| TGGCTGTTTACAAAGATGGA+TGG | - | chr4_3:54521112-54521131 | Msa0648100:CDS | 40.0% | |
| CGAAAATCTATTCATGCAGG+TGG | + | chr4_3:54521176-54521195 | None:intergenic | 40.0% | |
| ! | TTTCTTTTGCTTGGCAGGTT+GGG | - | chr4_3:54521316-54521335 | Msa0648100:five_prime_UTR | 40.0% |
| AAGATATCCACTGAAAGGCA+GGG | + | chr4_3:54521526-54521545 | None:intergenic | 40.0% | |
| !! | GTGTTGTTTGCAAGTCATGC+TGG | + | chr4_3:54515410-54515429 | None:intergenic | 45.0% |
| TTCCAGTAGTTGACGAGGTT+TGG | + | chr4_3:54515440-54515459 | None:intergenic | 45.0% | |
| TGGTTGAGGTTGAAGCTCAA+AGG | - | chr4_3:54515822-54515841 | Msa0648100:CDS | 45.0% | |
| TGAGGTTGAAGCTCAAAGGT+TGG | - | chr4_3:54515826-54515845 | Msa0648100:CDS | 45.0% | |
| ! | TTGTTTCTTAGTCCTGTGGC+TGG | - | chr4_3:54515920-54515939 | Msa0648100:intron | 45.0% |
| AGACCATTGAGGGACAAAAC+TGG | - | chr4_3:54515947-54515966 | Msa0648100:intron | 45.0% | |
| !! | GAACCAGTTTTGTCCCTCAA+TGG | + | chr4_3:54515953-54515972 | None:intergenic | 45.0% |
| ! | TGAGGGACAAAACTGGTTCA+TGG | - | chr4_3:54515954-54515973 | Msa0648100:intron | 45.0% |
| ! | GAGGGACAAAACTGGTTCAT+GGG | - | chr4_3:54515955-54515974 | Msa0648100:intron | 45.0% |
| ! | AGGGACAAAACTGGTTCATG+GGG | - | chr4_3:54515956-54515975 | Msa0648100:intron | 45.0% |
| !! | TGGTTTGGTCAAAGGGCTAA+AGG | - | chr4_3:54516264-54516283 | Msa0648100:CDS | 45.0% |
| !! | AAAGGTGTTTGCGCAGGTTA+AGG | - | chr4_3:54516282-54516301 | Msa0648100:CDS | 45.0% |
| AACTTCGAATGGTAGCCAAC+AGG | - | chr4_3:54517858-54517877 | Msa0648100:CDS | 45.0% | |
| ! | CTTCTTTTGCAGCGGAAAAG+AGG | - | chr4_3:54518020-54518039 | Msa0648100:intron | 45.0% |
| !! | TTGGCTTGGTGTATACAGCT+TGG | - | chr4_3:54518250-54518269 | Msa0648100:CDS | 45.0% |
| TCGTATGTCGCGAAGATTCT+TGG | + | chr4_3:54518297-54518316 | None:intergenic | 45.0% | |
| AATCTTCGCGACATACGATG+TGG | - | chr4_3:54518299-54518318 | Msa0648100:CDS | 45.0% | |
| CGCTTGTCATCGTCAAAACA+TGG | - | chr4_3:54518496-54518515 | Msa0648100:CDS | 45.0% | |
| ! | GGAGCATGATTCTTTTCAGC+TGG | - | chr4_3:54518622-54518641 | Msa0648100:intron | 45.0% |
| ATTGATGGAAAGTCCGTCTG+TGG | - | chr4_3:54518649-54518668 | Msa0648100:intron | 45.0% | |
| ! | GATTGGTCAGCAAGCTATAG+TGG | - | chr4_3:54519113-54519132 | Msa0648100:CDS | 45.0% |
| TGTCTTGTACATCTGACTGC+AGG | - | chr4_3:54519147-54519166 | Msa0648100:CDS | 45.0% | |
| CTGACTGCAGGAATACTAGT+TGG | - | chr4_3:54519159-54519178 | Msa0648100:CDS | 45.0% | |
| !! | CTTAGTTTGCGGTAGGTTGT+AGG | - | chr4_3:54519750-54519769 | Msa0648100:intron | 45.0% |
| GCATTGAACAAGGACTCTAC+AGG | + | chr4_3:54519934-54519953 | None:intergenic | 45.0% | |
| ! | GACTTGCTTTCCAAATGGCA+AGG | + | chr4_3:54520017-54520036 | None:intergenic | 45.0% |
| CAACCTTCACCGTTACTCAA+AGG | + | chr4_3:54520042-54520061 | None:intergenic | 45.0% | |
| CTTTGAGTAACGGTGAAGGT+TGG | - | chr4_3:54520040-54520059 | Msa0648100:intron | 45.0% | |
| GCGTGAATCGCGAATAACAT+TGG | + | chr4_3:54520567-54520586 | None:intergenic | 45.0% | |
| TCAGAGCTGGTGTGTTTGTT+TGG | - | chr4_3:54520691-54520710 | Msa0648100:intron | 45.0% | |
| CTCCTTCTTCAGCATTACCT+CGG | - | chr4_3:54520743-54520762 | Msa0648100:intron | 45.0% | |
| CTGATGAGGAATGAACCAAC+GGG | + | chr4_3:54520771-54520790 | None:intergenic | 45.0% | |
| CCTGATGAGGAATGAACCAA+CGG | + | chr4_3:54520772-54520791 | None:intergenic | 45.0% | |
| TGGTTCATTCCTCATCAGGT+TGG | - | chr4_3:54520773-54520792 | Msa0648100:intron | 45.0% | |
| GGTTCATTCCTCATCAGGTT+GGG | - | chr4_3:54520774-54520793 | Msa0648100:intron | 45.0% | |
| CATGCAAATAACACAGTCCG+TGG | + | chr4_3:54520942-54520961 | None:intergenic | 45.0% | |
| CGTCACCTGCATATAACAGT+TGG | + | chr4_3:54521069-54521088 | None:intergenic | 45.0% | |
| ! | CTTTCTTTTGCTTGGCAGGT+TGG | - | chr4_3:54521315-54521334 | Msa0648100:five_prime_UTR | 45.0% |
| ATTTCATCCCTGCCTTTCAG+TGG | - | chr4_3:54521516-54521535 | Msa0648100:five_prime_UTR | 45.0% | |
| GAAGATATCCACTGAAAGGC+AGG | + | chr4_3:54521527-54521546 | None:intergenic | 45.0% | |
| !!! | AAAGATTAATTTTTTTTTAT+TGG | + | chr4_3:54515497-54515516 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTAACT+TGG | - | chr4_3:54521442-54521461 | Msa0648100:five_prime_UTR | 5.0% |
| CACCAAACCTCGTCAACTAC+TGG | - | chr4_3:54515435-54515454 | Msa0648100:three_prime_UTR | 50.0% | |
| ! | GGGTTTTCCAGTAGTTGACG+AGG | + | chr4_3:54515445-54515464 | None:intergenic | 50.0% |
| TGCGCAGGTTAAGGAGAGAT+AGG | - | chr4_3:54516291-54516310 | Msa0648100:CDS | 50.0% | |
| AATGGTTGAATGCAGGGACG+TGG | - | chr4_3:54517318-54517337 | Msa0648100:intron | 50.0% | |
| ! | TTTTGCAGCGGAAAAGAGGG+AGG | - | chr4_3:54518024-54518043 | Msa0648100:intron | 50.0% |
| TTTGCAGCGGAAAAGAGGGA+GGG | - | chr4_3:54518025-54518044 | Msa0648100:intron | 50.0% | |
| GAGGGAGGGTTGAATCAAGA+TGG | - | chr4_3:54518039-54518058 | Msa0648100:intron | 50.0% | |
| TCTCCATCGTCATCCACAGA+CGG | + | chr4_3:54518665-54518684 | None:intergenic | 50.0% | |
| !! | AGGCCGACTTGCTTTCCAAA+TGG | + | chr4_3:54520022-54520041 | None:intergenic | 50.0% |
| GCAAGTCGGCCTTTGAGTAA+CGG | - | chr4_3:54520030-54520049 | Msa0648100:intron | 50.0% | |
| GTGAAGGTTGGGAGACAATG+AGG | - | chr4_3:54520052-54520071 | Msa0648100:CDS | 50.0% | |
| GACAATGAGGCGTGAGCTTT+CGG | - | chr4_3:54520065-54520084 | Msa0648100:CDS | 50.0% | |
| GTGTTTGCCATGGGGTCTTA+AGG | - | chr4_3:54520175-54520194 | Msa0648100:intron | 50.0% | |
| AAACAGGCCTTAAGACCCCA+TGG | + | chr4_3:54520185-54520204 | None:intergenic | 50.0% | |
| ! | GCAGATGGGATTCTTTTGGG+CGG | - | chr4_3:54520458-54520477 | Msa0648100:intron | 50.0% |
| TGGGATTGCTAGCCGAGTAA+CGG | + | chr4_3:54520624-54520643 | None:intergenic | 50.0% | |
| GCATAGAACCAGATCAGAGC+TGG | - | chr4_3:54520678-54520697 | Msa0648100:intron | 50.0% | |
| ! | CAAACACACCAGCTCTGATC+TGG | + | chr4_3:54520689-54520708 | None:intergenic | 50.0% |
| AGCCGAGGTAATGCTGAAGA+AGG | + | chr4_3:54520748-54520767 | None:intergenic | 50.0% | |
| !! | CCGTTGGTTCATTCCTCATC+AGG | - | chr4_3:54520769-54520788 | Msa0648100:intron | 50.0% |
| GCCGCGATCAAATGATTGCA+TGG | - | chr4_3:54520979-54520998 | Msa0648100:intron | 50.0% | |
| ! | AGATGGAGTGCCCAACATGT+CGG | - | chr4_3:54521141-54521160 | Msa0648100:CDS | 50.0% |
| TCTATTCATGCAGGTGGGAG+CGG | + | chr4_3:54521170-54521189 | None:intergenic | 50.0% | |
| ! | AATGGTCTGAGACCAGCCAC+AGG | + | chr4_3:54515935-54515954 | None:intergenic | 55.0% |
| !! | TGGCTGGTCTCAGACCATTG+AGG | - | chr4_3:54515936-54515955 | Msa0648100:intron | 55.0% |
| !! | GGCTGGTCTCAGACCATTGA+GGG | - | chr4_3:54515937-54515956 | Msa0648100:intron | 55.0% |
| ! | AACTGGTTCATGGGGTGACG+AGG | - | chr4_3:54515964-54515983 | Msa0648100:intron | 55.0% |
| !! | AGGGCTAAAGGTGTTTGCGC+AGG | - | chr4_3:54516276-54516295 | Msa0648100:CDS | 55.0% |
| ATGCAAAGGAGCTGCGGAGA+GGG | + | chr4_3:54518431-54518450 | None:intergenic | 55.0% | |
| CATGCCATGCAAAGGAGCTG+CGG | + | chr4_3:54518437-54518456 | None:intergenic | 55.0% | |
| AGTCCGTCTGTGGATGACGA+TGG | - | chr4_3:54518659-54518678 | Msa0648100:CDS | 55.0% | |
| CGGCCTTTGAGTAACGGTGA+AGG | - | chr4_3:54520036-54520055 | Msa0648100:intron | 55.0% | |
| GAGTTAGGCCCAACCTGATG+AGG | + | chr4_3:54520785-54520804 | None:intergenic | 55.0% | |
| TGATCGCGGCGTGAGATCAA+TGG | + | chr4_3:54520969-54520988 | None:intergenic | 55.0% | |
| CTATTCATGCAGGTGGGAGC+GGG | + | chr4_3:54521169-54521188 | None:intergenic | 55.0% | |
| CATGCAAAGGAGCTGCGGAG+AGG | + | chr4_3:54518432-54518451 | None:intergenic | 60.0% | |
| CTCTCCGCAGCTCCTTTGCA+TGG | - | chr4_3:54518430-54518449 | Msa0648100:intron | 60.0% | |
| CGCAGCTCCTTTGCATGGCA+TGG | - | chr4_3:54518435-54518454 | Msa0648100:intron | 60.0% | |
| ATAACTGCAGGGGGCAGCGA+AGG | - | chr4_3:54519077-54519096 | Msa0648100:intron | 60.0% | |
| AGCATTACCTCGGCTCCCGT+TGG | - | chr4_3:54520753-54520772 | Msa0648100:intron | 60.0% | |
| GAATGAACCAACGGGAGCCG+AGG | + | chr4_3:54520763-54520782 | None:intergenic | 60.0% | |
| !! | GGAGCGGGCGCCGACATGTT+GGG | + | chr4_3:54521154-54521173 | None:intergenic | 70.0% |
| !! | GGGAGCGGGCGCCGACATGT+TGG | + | chr4_3:54521155-54521174 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54515404 | 54521583 | 54515404 | ID=Msa0648100;Name=Msa0648100 |
| chr4_3 | mRNA | 54515404 | 54521583 | 54515404 | ID=Msa0648100-mRNA-1;Parent=Msa0648100;Name=Msa0648100-mRNA-1;_AED=0.08;_eAED=0.08;_QI=396|0.92|0.93|1|0.92|0.86|15|316|575 |
| chr4_3 | exon | 54515404 | 54515654 | 54515404 | ID=Msa0648100-mRNA-1:exon:13817;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54515738 | 54515904 | 54515738 | ID=Msa0648100-mRNA-1:exon:13816;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54515987 | 54516103 | 54515987 | ID=Msa0648100-mRNA-1:exon:13815;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54516197 | 54516525 | 54516197 | ID=Msa0648100-mRNA-1:exon:13814;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54516882 | 54517049 | 54516882 | ID=Msa0648100-mRNA-1:exon:13813;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54517807 | 54517900 | 54517807 | ID=Msa0648100-mRNA-1:exon:13812;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54518068 | 54518127 | 54518068 | ID=Msa0648100-mRNA-1:exon:13811;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54518221 | 54518369 | 54518221 | ID=Msa0648100-mRNA-1:exon:13810;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54518470 | 54518547 | 54518470 | ID=Msa0648100-mRNA-1:exon:13809;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54518653 | 54518719 | 54518653 | ID=Msa0648100-mRNA-1:exon:13808;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54518895 | 54518955 | 54518895 | ID=Msa0648100-mRNA-1:exon:13807;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54519108 | 54519223 | 54519108 | ID=Msa0648100-mRNA-1:exon:13806;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54519527 | 54519654 | 54519527 | ID=Msa0648100-mRNA-1:exon:13805;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54520047 | 54520119 | 54520047 | ID=Msa0648100-mRNA-1:exon:13804;Parent=Msa0648100-mRNA-1 |
| chr4_3 | exon | 54521002 | 54521583 | 54521002 | ID=Msa0648100-mRNA-1:exon:13803;Parent=Msa0648100-mRNA-1 |
| chr4_3 | five_prime_UTR | 54521188 | 54521583 | 54521188 | ID=Msa0648100-mRNA-1:five_prime_utr;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54521002 | 54521187 | 54521002 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54520047 | 54520119 | 54520047 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54519527 | 54519654 | 54519527 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54519108 | 54519223 | 54519108 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54518895 | 54518955 | 54518895 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54518653 | 54518719 | 54518653 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54518470 | 54518547 | 54518470 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54518221 | 54518369 | 54518221 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54518068 | 54518127 | 54518068 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54517807 | 54517900 | 54517807 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54516882 | 54517049 | 54516882 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54516197 | 54516525 | 54516197 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54515987 | 54516103 | 54515987 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | CDS | 54515803 | 54515904 | 54515803 | ID=Msa0648100-mRNA-1:cds;Parent=Msa0648100-mRNA-1 |
| chr4_3 | three_prime_UTR | 54515738 | 54515802 | 54515738 | ID=Msa0648100-mRNA-1:three_prime_utr;Parent=Msa0648100-mRNA-1 |
| chr4_3 | three_prime_UTR | 54515404 | 54515654 | 54515404 | ID=Msa0648100-mRNA-1:three_prime_utr;Parent=Msa0648100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
