Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649000 | XP_024637652.1 | 94.753 | 324 | 17 | 0 | 1 | 324 | 1 | 324 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649000 | sp|Q3EC11|ZDHC2_ARATH | 57.231 | 325 | 138 | 1 | 1 | 324 | 1 | 325 | 2.97e-131 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649000 | A0A396IFV0 | 94.753 | 324 | 17 | 0 | 1 | 324 | 1 | 324 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0649000 | Msa0888130 | 0.808059 | 3.729856e-50 | -8.615850e-47 |
| Msa0649000 | Msa0899430 | 0.809642 | 1.710935e-50 | -8.615850e-47 |
| Msa0649000 | Msa0958550 | 0.802050 | 6.741733e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649000 | MtrunA17_Chr4g0049351 | 94.753 | 324 | 17 | 0 | 1 | 324 | 1 | 324 | 0.0 | 613 |
| Msa0649000 | MtrunA17_Chr4g0064931 | 51.642 | 335 | 148 | 1 | 3 | 323 | 2 | 336 | 7.65e-114 | 343 |
| Msa0649000 | MtrunA17_Chr1g0211241 | 49.333 | 300 | 144 | 3 | 26 | 324 | 138 | 430 | 3.31e-90 | 282 |
| Msa0649000 | MtrunA17_Chr1g0211231 | 47.104 | 259 | 87 | 3 | 3 | 249 | 2 | 222 | 4.49e-68 | 222 |
| Msa0649000 | MtrunA17_Chr5g0418551 | 31.915 | 188 | 121 | 4 | 91 | 274 | 55 | 239 | 2.14e-16 | 77.4 |
| Msa0649000 | MtrunA17_Chr5g0405451 | 29.240 | 171 | 113 | 3 | 40 | 203 | 245 | 414 | 1.24e-14 | 74.3 |
| Msa0649000 | MtrunA17_Chr1g0196261 | 30.726 | 179 | 97 | 4 | 72 | 244 | 268 | 425 | 1.88e-14 | 73.9 |
| Msa0649000 | MtrunA17_Chr5g0406201 | 28.022 | 182 | 125 | 2 | 34 | 210 | 273 | 453 | 7.94e-14 | 72.0 |
| Msa0649000 | MtrunA17_Chr5g0406201 | 31.757 | 148 | 97 | 3 | 94 | 241 | 305 | 448 | 7.28e-12 | 65.9 |
| Msa0649000 | MtrunA17_Chr4g0073161 | 25.498 | 251 | 134 | 7 | 27 | 232 | 20 | 262 | 2.35e-13 | 70.5 |
| Msa0649000 | MtrunA17_Chr4g0030551 | 27.000 | 200 | 133 | 4 | 30 | 221 | 112 | 306 | 5.70e-12 | 66.2 |
| Msa0649000 | MtrunA17_Chr6g0461061 | 24.790 | 238 | 155 | 4 | 30 | 246 | 250 | 484 | 6.68e-12 | 66.2 |
| Msa0649000 | MtrunA17_Chr4g0063141 | 29.240 | 171 | 115 | 3 | 45 | 213 | 539 | 705 | 7.20e-12 | 66.2 |
| Msa0649000 | MtrunA17_Chr8g0361891 | 27.972 | 143 | 97 | 2 | 78 | 220 | 222 | 358 | 8.31e-12 | 65.5 |
| Msa0649000 | MtrunA17_Chr5g0434371 | 28.947 | 190 | 131 | 3 | 25 | 214 | 557 | 742 | 1.04e-11 | 65.9 |
| Msa0649000 | MtrunA17_Chr0c28g0493931 | 40.000 | 90 | 40 | 1 | 3 | 78 | 2 | 91 | 1.24e-11 | 60.5 |
| Msa0649000 | MtrunA17_Chr7g0276681 | 27.059 | 255 | 155 | 9 | 10 | 247 | 35 | 275 | 4.55e-11 | 63.5 |
| Msa0649000 | MtrunA17_Chr4g0031491 | 25.847 | 236 | 156 | 6 | 27 | 245 | 16 | 249 | 7.41e-11 | 62.8 |
| Msa0649000 | MtrunA17_Chr7g0274241 | 29.032 | 217 | 145 | 5 | 30 | 244 | 62 | 271 | 8.39e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649000 | AT2G14255.1 | 57.231 | 325 | 138 | 1 | 1 | 324 | 1 | 325 | 3.02e-132 | 387 |
| Msa0649000 | AT5G20350.1 | 53.776 | 331 | 144 | 1 | 3 | 324 | 2 | 332 | 7.01e-118 | 353 |
| Msa0649000 | AT5G37500.1 | 29.534 | 193 | 130 | 4 | 17 | 209 | 527 | 713 | 1.67e-13 | 71.6 |
| Msa0649000 | AT2G31820.1 | 25.909 | 220 | 152 | 6 | 34 | 244 | 162 | 379 | 2.46e-13 | 71.2 |
| Msa0649000 | AT1G05640.1 | 28.500 | 200 | 134 | 5 | 51 | 244 | 147 | 343 | 1.22e-12 | 68.9 |
| Msa0649000 | AT5G66055.1 | 30.405 | 148 | 97 | 2 | 52 | 194 | 250 | 396 | 4.13e-12 | 67.0 |
| Msa0649000 | AT5G66055.1 | 31.034 | 145 | 97 | 2 | 94 | 238 | 264 | 405 | 2.47e-11 | 64.7 |
| Msa0649000 | AT5G40160.1 | 33.108 | 148 | 94 | 2 | 57 | 202 | 152 | 296 | 5.01e-12 | 66.2 |
| Msa0649000 | AT5G57740.1 | 24.400 | 250 | 137 | 6 | 27 | 232 | 20 | 261 | 6.10e-12 | 66.6 |
| Msa0649000 | AT3G02850.1 | 30.387 | 181 | 120 | 4 | 17 | 197 | 544 | 718 | 5.67e-11 | 63.9 |
| Msa0649000 | AT3G02850.2 | 29.592 | 196 | 132 | 4 | 17 | 212 | 544 | 733 | 7.40e-11 | 63.5 |
Find 98 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGGATTGAGTGAAAA+TGG | 0.196911 | 4_3:+55599536 | Msa0649000:five_prime_UTR |
| GTTATTAATTGACCCTAATT+AGG | 0.204731 | 4_3:-55599652 | None:intergenic |
| CATTGCATTGGGCAGCATTA+AGG | 0.209845 | 4_3:+55602886 | Msa0649000:CDS |
| GACTATAATACACAATAAAA+TGG | 0.221394 | 4_3:-55604314 | None:intergenic |
| TATAACCAGGGCTGCGTATA+AGG | 0.227833 | 4_3:+55601788 | Msa0649000:intron |
| GCCAGCTCCTAACCTTAAAA+AGG | 0.231739 | 4_3:+55604489 | Msa0649000:intron |
| TGGGAGGTAGCTGCTGTTCT+TGG | 0.237124 | 4_3:-55599828 | None:intergenic |
| GTTGAAGCTGCTGATATAAA+TGG | 0.275570 | 4_3:+55600447 | Msa0649000:CDS |
| TGTGCTGTGCTTGTGCATGC+TGG | 0.281517 | 4_3:+55602924 | Msa0649000:CDS |
| TTACCGCTGCTGTTGGATTT+TGG | 0.291324 | 4_3:+55604512 | Msa0649000:CDS |
| AGCTGTGAAGACGTCGAGTA+TGG | 0.291547 | 4_3:-55599848 | None:intergenic |
| GGGAGGTAGCTGCTGTTCTT+GGG | 0.300692 | 4_3:-55599827 | None:intergenic |
| AGCATAATAGCCATTAAAAT+CGG | 0.320996 | 4_3:-55599938 | None:intergenic |
| TTCATCAATTCAGTTGTTGC+AGG | 0.338018 | 4_3:+55604352 | Msa0649000:CDS |
| GTTCATGTTGATGCACAATA+TGG | 0.346455 | 4_3:+55601244 | Msa0649000:CDS |
| TGTGGGTTGGTGACAGATAT+TGG | 0.357877 | 4_3:+55604283 | Msa0649000:CDS |
| TTGATTATTATTGTATGAAA+AGG | 0.358919 | 4_3:-55599723 | None:intergenic |
| AGCTGCTGTTCTTGGGGCTT+CGG | 0.375745 | 4_3:-55599820 | None:intergenic |
| GTGCTGTGCTTGTGCATGCT+GGG | 0.386896 | 4_3:+55602925 | Msa0649000:CDS |
| GGGTAAATTGATGTGACGTT+AGG | 0.388503 | 4_3:-55599702 | None:intergenic |
| AAGAAGGATTGAGTGAAAAT+GGG | 0.391387 | 4_3:+55599537 | Msa0649000:five_prime_UTR |
| CATTGTCCACTATCTCATTC+AGG | 0.397551 | 4_3:+55599993 | Msa0649000:CDS |
| CTGCTGATATAAATGGATAC+AGG | 0.398421 | 4_3:+55600454 | Msa0649000:CDS |
| ATTGCATTGGGCAGCATTAA+GGG | 0.399946 | 4_3:+55602887 | Msa0649000:CDS |
| GGACTCCTTCCATCATTATC+AGG | 0.400331 | 4_3:-55601322 | None:intergenic |
| ATGGCTATTATGCTCTTCAA+TGG | 0.407604 | 4_3:+55599947 | Msa0649000:CDS |
| GGCAGCTGCTGATGTGCTCT+TGG | 0.415086 | 4_3:+55600410 | Msa0649000:CDS |
| AGGTGCTACCCCATTGCATT+GGG | 0.415241 | 4_3:+55602875 | Msa0649000:intron |
| CTTCCTGAGTCTTCTTGCAA+TGG | 0.416376 | 4_3:+55599762 | Msa0649000:exon |
| GCTACAAACGGCTTTACATT+GGG | 0.419719 | 4_3:+55600368 | Msa0649000:CDS |
| TGATTATTATTGTATGAAAA+GGG | 0.420456 | 4_3:-55599722 | None:intergenic |
| AAAGAGAAATTGAGAAAAGA+AGG | 0.422020 | 4_3:+55599521 | Msa0649000:five_prime_UTR |
| TAGGTGCTACCCCATTGCAT+TGG | 0.437042 | 4_3:+55602874 | Msa0649000:intron |
| GGTAAATTGATGTGACGTTA+GGG | 0.440059 | 4_3:-55599701 | None:intergenic |
| TATTGATTGTTGAGAAAAGA+AGG | 0.440108 | 4_3:-55599622 | None:intergenic |
| TGCTCTTGGAGAATGGTGCT+CGG | 0.446193 | 4_3:+55600424 | Msa0649000:CDS |
| TTACATTGGGCGGCAGTTCG+CGG | 0.448066 | 4_3:+55600381 | Msa0649000:CDS |
| TTAATGCTGCCCAATGCAAT+GGG | 0.451084 | 4_3:-55602884 | None:intergenic |
| TGCTACAAACGGCTTTACAT+TGG | 0.458106 | 4_3:+55600367 | Msa0649000:CDS |
| GGAGAGGCAAACTTTATTGT+GGG | 0.459017 | 4_3:+55604266 | Msa0649000:CDS |
| GTGCAGCTTGCATATGATAA+AGG | 0.472420 | 4_3:+55602993 | Msa0649000:CDS |
| ATAACCAGGGCTGCGTATAA+GGG | 0.473291 | 4_3:+55601789 | Msa0649000:intron |
| TGGCTATTATGCTCTTCAAT+GGG | 0.473292 | 4_3:+55599948 | Msa0649000:CDS |
| TTATCATATGCAAGCTGCAC+AGG | 0.483061 | 4_3:-55602990 | None:intergenic |
| ACTATAATACACAATAAAAT+GGG | 0.484193 | 4_3:-55604313 | None:intergenic |
| ATAGCTCTCTCTTCATCTGC+TGG | 0.486251 | 4_3:+55604541 | Msa0649000:CDS |
| CTTAATGCTGCCCAATGCAA+TGG | 0.486571 | 4_3:-55602885 | None:intergenic |
| TTTGCAGTCTAATCAACAAC+GGG | 0.488865 | 4_3:+55604228 | Msa0649000:intron |
| GGCGGCAGTTCGCGGTGCAA+TGG | 0.496684 | 4_3:+55600389 | Msa0649000:CDS |
| ATGTGACGTTAGGGTTTGAA+AGG | 0.498967 | 4_3:-55599692 | None:intergenic |
| GCTTGTGCATGCTGGGACAA+AGG | 0.505981 | 4_3:+55602932 | Msa0649000:CDS |
| GCTGATGTGCTCTTGGAGAA+TGG | 0.515021 | 4_3:+55600417 | Msa0649000:CDS |
| AGGCAAACTTTATTGTGGGT+TGG | 0.519898 | 4_3:+55604270 | Msa0649000:CDS |
| TTTGATGTGCCTGATAATGA+TGG | 0.520364 | 4_3:+55601313 | Msa0649000:CDS |
| TGGAGAGGCAAACTTTATTG+TGG | 0.521428 | 4_3:+55604265 | Msa0649000:CDS |
| GGAGGTAGCTGCTGTTCTTG+GGG | 0.521578 | 4_3:-55599826 | None:intergenic |
| GTCTTCACAGCTTCCATCCA+TGG | 0.530821 | 4_3:+55599859 | Msa0649000:CDS |
| GCATAATAGCCATTAAAATC+GGG | 0.531221 | 4_3:-55599937 | None:intergenic |
| TGAGAAAAGAAGGTTGATGA+TGG | 0.541189 | 4_3:-55599612 | None:intergenic |
| TGGGACAAAGGAAGAATTGA+CGG | 0.542276 | 4_3:+55602944 | Msa0649000:CDS |
| CAACAACTGAATTGATGAAG+AGG | 0.546244 | 4_3:-55604348 | None:intergenic |
| ACACCTATAAAACATAATCA+AGG | 0.551237 | 4_3:-55604566 | None:intergenic |
| TAAAGACCTCATGCTACAAA+CGG | 0.554457 | 4_3:+55600356 | Msa0649000:CDS |
| AGAAGGATTGAGTGAAAATG+GGG | 0.554961 | 4_3:+55599538 | Msa0649000:five_prime_UTR |
| CAAGGAAGACAAGATAAAGA+TGG | 0.557066 | 4_3:+55601855 | Msa0649000:CDS |
| AGCATTAAGGGGACATTCAG+AGG | 0.558357 | 4_3:+55602899 | Msa0649000:CDS |
| GCTCTTGGAGAATGGTGCTC+GGG | 0.563161 | 4_3:+55600425 | Msa0649000:CDS |
| GTAGTACCTGAATGAGATAG+TGG | 0.565206 | 4_3:-55599999 | None:intergenic |
| GCTGTGAAGACGTCGAGTAT+GGG | 0.567488 | 4_3:-55599847 | None:intergenic |
| AACGGGCTCATAGCAACCAC+TGG | 0.570773 | 4_3:+55604245 | Msa0649000:CDS |
| AAGCCATTGCAAGAAGACTC+AGG | 0.589563 | 4_3:-55599765 | None:intergenic |
| TTGCATTGGGCAGCATTAAG+GGG | 0.594036 | 4_3:+55602888 | Msa0649000:CDS |
| TGTGACGTTAGGGTTTGAAA+GGG | 0.597775 | 4_3:-55599691 | None:intergenic |
| CTATTTAGAGATGCAAGTCA+AGG | 0.598888 | 4_3:+55601837 | Msa0649000:CDS |
| ATGGAAGGAGTCCTCTACAT+TGG | 0.600469 | 4_3:+55601332 | Msa0649000:CDS |
| TTGACGGTGAAGGACAATGC+AGG | 0.601914 | 4_3:+55602960 | Msa0649000:CDS |
| TGCTGATATAAATGGATACA+GGG | 0.604861 | 4_3:+55600455 | Msa0649000:CDS |
| TGAGATAGTGGACAATGTGG+TGG | 0.605084 | 4_3:-55599987 | None:intergenic |
| GAGAAAAGAAGGTTGATGAT+GGG | 0.608660 | 4_3:-55599611 | None:intergenic |
| AATAAAGTTTGCCTCTCCAG+TGG | 0.613823 | 4_3:-55604261 | None:intergenic |
| AATGGTACGTACAAGGACCT+TGG | 0.622896 | 4_3:-55603030 | None:intergenic |
| GAAAAGAAGGTTGATGATGG+GGG | 0.629585 | 4_3:-55599609 | None:intergenic |
| ACAAACGGCTTTACATTGGG+CGG | 0.629962 | 4_3:+55600371 | Msa0649000:CDS |
| AGAAAAGAAGGTTGATGATG+GGG | 0.631487 | 4_3:-55599610 | None:intergenic |
| AGGTCATCAAAATGTCGCCA+AGG | 0.633825 | 4_3:+55603013 | Msa0649000:CDS |
| GTAAAGCCGTTTGTAGCATG+AGG | 0.637220 | 4_3:-55600362 | None:intergenic |
| GTGAAGACGTCGAGTATGGG+AGG | 0.644381 | 4_3:-55599844 | None:intergenic |
| GCTCATAGCAACCACTGGAG+AGG | 0.646650 | 4_3:+55604250 | Msa0649000:CDS |
| TTTATGGCATACCAATGTAG+AGG | 0.647909 | 4_3:-55601343 | None:intergenic |
| AAAGGAAGAATTGACGGTGA+AGG | 0.655882 | 4_3:+55602950 | Msa0649000:CDS |
| CAGGCACATCAAAATCAGCA+TGG | 0.668819 | 4_3:-55601303 | None:intergenic |
| GAGGTCTTTAGCATTGACAT+CGG | 0.669644 | 4_3:-55600343 | None:intergenic |
| AAAATCGGGATTAGAAACAG+AGG | 0.679411 | 4_3:-55599923 | None:intergenic |
| TGACCAAAATCCAACAGCAG+CGG | 0.683892 | 4_3:-55604515 | None:intergenic |
| ATGTGCCTGATAATGATGGA+AGG | 0.692314 | 4_3:+55601317 | Msa0649000:CDS |
| GAAGGATTGAGTGAAAATGG+GGG | 0.712119 | 4_3:+55599539 | Msa0649000:five_prime_UTR |
| TAATGCTGCCCAATGCAATG+GGG | 0.741539 | 4_3:-55602883 | None:intergenic |
| GAATGAGATAGTGGACAATG+TGG | 0.775429 | 4_3:-55599990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTATGATAAAAAAAAAA+AGG | - | chr4_3:55600024-55600043 | None:intergenic | 10.0% |
| !!! | TTCATTTTTAATATTTATGT+TGG | + | chr4_3:55600085-55600104 | Msa0649000:intron | 10.0% |
| !!! | ACCAATAAAAATATATATTT+TGG | + | chr4_3:55600220-55600239 | Msa0649000:intron | 10.0% |
| !!! | CCAATAAAAATATATATTTT+GGG | + | chr4_3:55600221-55600240 | Msa0649000:intron | 10.0% |
| !!! | CAATAAAAATATATATTTTG+GGG | + | chr4_3:55600222-55600241 | Msa0649000:intron | 10.0% |
| !! | CATTAAATAATTTATGTATT+TGG | - | chr4_3:55602325-55602344 | None:intergenic | 10.0% |
| !! | TCAATAAAAAAAACCTAATT+AGG | + | chr4_3:55599639-55599658 | Msa0649000:five_prime_UTR | 15.0% |
| !! | CAATAAAAAAAACCTAATTA+GGG | + | chr4_3:55599640-55599659 | Msa0649000:five_prime_UTR | 15.0% |
| !! | TGATTATTATTGTATGAAAA+GGG | - | chr4_3:55599725-55599744 | None:intergenic | 15.0% |
| !! | TTGATTATTATTGTATGAAA+AGG | - | chr4_3:55599726-55599745 | None:intergenic | 15.0% |
| !!! | CCCAAAATATATATTTTTAT+TGG | - | chr4_3:55600224-55600243 | None:intergenic | 15.0% |
| !! | ATCATATTGTACTTATAATA+TGG | + | chr4_3:55600260-55600279 | Msa0649000:intron | 15.0% |
| !!! | ATGTATAATTAGTATTTTGA+TGG | + | chr4_3:55600522-55600541 | Msa0649000:intron | 15.0% |
| !! | TGTTATAAATTTGATTCATA+AGG | - | chr4_3:55600812-55600831 | None:intergenic | 15.0% |
| !!! | TTATTTTTAAAGATTTGTGT+CGG | + | chr4_3:55601079-55601098 | Msa0649000:intron | 15.0% |
| !! | TTCAAAAACAGTTAATTTAA+TGG | + | chr4_3:55601520-55601539 | Msa0649000:intron | 15.0% |
| !!! | CAAAGTTTTTTAAAAACTTT+AGG | + | chr4_3:55601577-55601596 | Msa0649000:intron | 15.0% |
| !! | ATTAAAACTAGATATAGAAA+AGG | - | chr4_3:55601950-55601969 | None:intergenic | 15.0% |
| !!! | CTATATCTAGTTTTAATATT+TGG | + | chr4_3:55601953-55601972 | Msa0649000:intron | 15.0% |
| !! | TACAATAAAGATCAATTATA+CGG | + | chr4_3:55602030-55602049 | Msa0649000:intron | 15.0% |
| !!! | TTTAGACTGATTAATTTTAT+AGG | + | chr4_3:55602130-55602149 | Msa0649000:intron | 15.0% |
| !!! | AAGAACATTTAAACTTTTTA+TGG | - | chr4_3:55602641-55602660 | None:intergenic | 15.0% |
| !!! | TTTAATTAATACTTCTGAAA+TGG | + | chr4_3:55602688-55602707 | Msa0649000:intron | 15.0% |
| !!! | CTTATTTTCATGAATTTTTA+TGG | + | chr4_3:55603540-55603559 | Msa0649000:intron | 15.0% |
| !! | TTAACATTACTTGTATTATA+TGG | - | chr4_3:55603878-55603897 | None:intergenic | 15.0% |
| !! | ACTATAATACACAATAAAAT+GGG | - | chr4_3:55604316-55604335 | None:intergenic | 15.0% |
| !!! | GTAGTTTTTGTAAATTTAAG+TGG | + | chr4_3:55600137-55600156 | Msa0649000:intron | 20.0% |
| !!! | TTGAATGCAAGAATTTTAAA+TGG | - | chr4_3:55600626-55600645 | None:intergenic | 20.0% |
| !! | TATCAGATAGAGTATAAAAT+TGG | - | chr4_3:55600758-55600777 | None:intergenic | 20.0% |
| !!! | GCTTTTATATTCAGATATTT+GGG | - | chr4_3:55600781-55600800 | None:intergenic | 20.0% |
| !!! | AGCTTTTATATTCAGATATT+TGG | - | chr4_3:55600782-55600801 | None:intergenic | 20.0% |
| !! | AATCAATAGATATTCTTGAT+TGG | + | chr4_3:55600880-55600899 | Msa0649000:intron | 20.0% |
| !! | AAATAGAACTACTTACATAT+AGG | - | chr4_3:55600910-55600929 | None:intergenic | 20.0% |
| !!! | TGCTATTTTCATAAGTTAAA+TGG | + | chr4_3:55601209-55601228 | Msa0649000:intron | 20.0% |
| !!! | AATCGGTTATTTTCAAAATA+GGG | - | chr4_3:55601399-55601418 | None:intergenic | 20.0% |
| !! | ATTCCTGTTAAAAGAAAATA+TGG | - | chr4_3:55601439-55601458 | None:intergenic | 20.0% |
| !! | ACAATAAAGATCAATTATAC+GGG | + | chr4_3:55602031-55602050 | Msa0649000:intron | 20.0% |
| !! | TATAATTAGATAGATGTGTT+GGG | - | chr4_3:55602219-55602238 | None:intergenic | 20.0% |
| !! | TTATAATTAGATAGATGTGT+TGG | - | chr4_3:55602220-55602239 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTTGTTTTGCAA+AGG | + | chr4_3:55602723-55602742 | Msa0649000:intron | 20.0% |
| !! | GAGATAATATTCAATAAAAC+TGG | + | chr4_3:55602849-55602868 | Msa0649000:intron | 20.0% |
| !!! | ATATTCAATAAAACTGGTTT+AGG | + | chr4_3:55602855-55602874 | Msa0649000:intron | 20.0% |
| !!! | TTATTTTTAGGGAAATTCAT+GGG | - | chr4_3:55603475-55603494 | None:intergenic | 20.0% |
| !!! | TTTATTTTTAGGGAAATTCA+TGG | - | chr4_3:55603476-55603495 | None:intergenic | 20.0% |
| !! | ATAGTTAAATGTACAAAGAA+TGG | + | chr4_3:55603572-55603591 | Msa0649000:intron | 20.0% |
| !! | TAGTTAAATGTACAAAGAAT+GGG | + | chr4_3:55603573-55603592 | Msa0649000:intron | 20.0% |
| !! | GAACATATAATACTCATTAT+AGG | - | chr4_3:55603698-55603717 | None:intergenic | 20.0% |
| !! | TTATATGTTCCAATATCTAA+TGG | + | chr4_3:55603708-55603727 | Msa0649000:intron | 20.0% |
| !! | GCTAAATTATGTTTCTTATA+AGG | - | chr4_3:55603832-55603851 | None:intergenic | 20.0% |
| !! | GACTATAATACACAATAAAA+TGG | - | chr4_3:55604317-55604336 | None:intergenic | 20.0% |
| !! | TAATGGAAAAGATTTAGTAA+TGG | - | chr4_3:55604463-55604482 | None:intergenic | 20.0% |
| ! | AAAGAGAAATTGAGAAAAGA+AGG | + | chr4_3:55599521-55599540 | Msa0649000:five_prime_UTR | 25.0% |
| !! | TATTGATTGTTGAGAAAAGA+AGG | - | chr4_3:55599625-55599644 | None:intergenic | 25.0% |
| ! | GTTATTAATTGACCCTAATT+AGG | - | chr4_3:55599655-55599674 | None:intergenic | 25.0% |
| !! | CGAAAATTCTCAATTTTTGA+AGG | - | chr4_3:55599888-55599907 | None:intergenic | 25.0% |
| ! | AGCATAATAGCCATTAAAAT+CGG | - | chr4_3:55599941-55599960 | None:intergenic | 25.0% |
| ! | AACAAACTGTATACATAAGA+AGG | - | chr4_3:55600067-55600086 | None:intergenic | 25.0% |
| !!! | TTTTATTGGTTTTAACCCTA+CGG | - | chr4_3:55600210-55600229 | None:intergenic | 25.0% |
| ! | TTAGTTTAACTGTATTTGTG+TGG | + | chr4_3:55600301-55600320 | Msa0649000:intron | 25.0% |
| ! | AATTAATAATGCACTGCAAA+TGG | - | chr4_3:55600494-55600513 | None:intergenic | 25.0% |
| !!! | AGTATTTTGATGGTTTTAGT+AGG | + | chr4_3:55600532-55600551 | Msa0649000:intron | 25.0% |
| ! | ATAAATTTGATTCATAAGGC+AGG | - | chr4_3:55600808-55600827 | None:intergenic | 25.0% |
| !!! | ATTTAAGTTGTTCTAGCTTT+TGG | + | chr4_3:55600854-55600873 | Msa0649000:intron | 25.0% |
| ! | TGGCTTTCTTGTAATTAAAA+GGG | - | chr4_3:55601040-55601059 | None:intergenic | 25.0% |
| ! | ATGGCTTTCTTGTAATTAAA+AGG | - | chr4_3:55601041-55601060 | None:intergenic | 25.0% |
| ! | ATATAAAAGCGACAATAAGA+TGG | - | chr4_3:55601060-55601079 | None:intergenic | 25.0% |
| ! | CGGAAAAAATGAAAACAAAT+AGG | + | chr4_3:55601099-55601118 | Msa0649000:intron | 25.0% |
| ! | ATAAGTTAAATGGTTTATGC+AGG | + | chr4_3:55601219-55601238 | Msa0649000:intron | 25.0% |
| !! | ATTTTGCAACAATGTGATTT+AGG | - | chr4_3:55601282-55601301 | None:intergenic | 25.0% |
| ! | CATAACAATCAAAAGCTTTA+TGG | - | chr4_3:55601362-55601381 | None:intergenic | 25.0% |
| !!! | CAATCGGTTATTTTCAAAAT+AGG | - | chr4_3:55601400-55601419 | None:intergenic | 25.0% |
| ! | TGAAATATGACATTGACAAT+CGG | - | chr4_3:55601416-55601435 | None:intergenic | 25.0% |
| !! | TCACCATATTTTCTTTTAAC+AGG | + | chr4_3:55601433-55601452 | Msa0649000:intron | 25.0% |
| ! | AAGGCATAACCAATAATATT+GGG | - | chr4_3:55601666-55601685 | None:intergenic | 25.0% |
| ! | AAAACTAGATATAGAAAAGG+TGG | - | chr4_3:55601947-55601966 | None:intergenic | 25.0% |
| ! | GTAAATTGTCTCTTGTAAAT+AGG | + | chr4_3:55602355-55602374 | Msa0649000:intron | 25.0% |
| ! | TTTAATTATCTTGTAGTTGC+TGG | + | chr4_3:55602516-55602535 | Msa0649000:intron | 25.0% |
| !! | TATTAACTTAATAGTTCTGC+TGG | + | chr4_3:55602760-55602779 | Msa0649000:intron | 25.0% |
| ! | AGCAAAAGTAAATTTGACAA+TGG | - | chr4_3:55603126-55603145 | None:intergenic | 25.0% |
| ! | AAAGATTAAAATTCAGCACA+AGG | - | chr4_3:55603293-55603312 | None:intergenic | 25.0% |
| ! | AACAGTGAATACAAAAATCA+AGG | - | chr4_3:55603443-55603462 | None:intergenic | 25.0% |
| ! | TCTTTCCAATTGAGTATTAT+TGG | + | chr4_3:55603657-55603676 | Msa0649000:intron | 25.0% |
| ! | ATGTTCCAATAATACTCAAT+TGG | - | chr4_3:55603665-55603684 | None:intergenic | 25.0% |
| ! | AAGAAACATAATTTAGCAGT+AGG | + | chr4_3:55603835-55603854 | Msa0649000:intron | 25.0% |
| ! | GTATGAATGATATTGCTAAT+TGG | - | chr4_3:55604396-55604415 | None:intergenic | 25.0% |
| !! | GTTCCTTGATTATGTTTTAT+AGG | + | chr4_3:55604563-55604582 | Msa0649000:CDS | 25.0% |
| ! | ACACCTATAAAACATAATCA+AGG | - | chr4_3:55604569-55604588 | None:intergenic | 25.0% |
| AAAGAAGGATTGAGTGAAAA+TGG | + | chr4_3:55599536-55599555 | Msa0649000:five_prime_UTR | 30.0% | |
| AAGAAGGATTGAGTGAAAAT+GGG | + | chr4_3:55599537-55599556 | Msa0649000:five_prime_UTR | 30.0% | |
| ! | AGAATTTTCGTTGAACAAGA+TGG | + | chr4_3:55599898-55599917 | Msa0649000:CDS | 30.0% |
| ! | GTTTCTAATCCCGATTTTAA+TGG | + | chr4_3:55599928-55599947 | Msa0649000:CDS | 30.0% |
| GCATAATAGCCATTAAAATC+GGG | - | chr4_3:55599940-55599959 | None:intergenic | 30.0% | |
| TTTATGTTGGTGTGTGATTA+TGG | + | chr4_3:55600098-55600117 | Msa0649000:intron | 30.0% | |
| TTATGTTGGTGTGTGATTAT+GGG | + | chr4_3:55600099-55600118 | Msa0649000:intron | 30.0% | |
| TGCTGATATAAATGGATACA+GGG | + | chr4_3:55600455-55600474 | Msa0649000:CDS | 30.0% | |
| ATTTATAGATGTTACCAGTC+AGG | + | chr4_3:55600572-55600591 | Msa0649000:intron | 30.0% | |
| CACTAGTTCAAATTTGTGTT+GGG | - | chr4_3:55600650-55600669 | None:intergenic | 30.0% | |
| TCACTAGTTCAAATTTGTGT+TGG | - | chr4_3:55600651-55600670 | None:intergenic | 30.0% | |
| GAATACTAGCAAACAGAATT+AGG | - | chr4_3:55601189-55601208 | None:intergenic | 30.0% | |
| !! | AGCTTTTGATTGTTATGCAT+TGG | + | chr4_3:55601365-55601384 | Msa0649000:intron | 30.0% |
| ! | ATGGAGTGTTAACTAATGAA+TGG | + | chr4_3:55601539-55601558 | Msa0649000:intron | 30.0% |
| ! | TGGAGTGTTAACTAATGAAT+GGG | + | chr4_3:55601540-55601559 | Msa0649000:intron | 30.0% |
| !! | TAAAAAACTTTGAAGCGCAT+TGG | - | chr4_3:55601569-55601588 | None:intergenic | 30.0% |
| ATAACCAATAATATTGGGGT+GGG | - | chr4_3:55601661-55601680 | None:intergenic | 30.0% | |
| AGGCATAACCAATAATATTG+GGG | - | chr4_3:55601665-55601684 | None:intergenic | 30.0% | |
| ! | GAAGGCATAACCAATAATAT+TGG | - | chr4_3:55601667-55601686 | None:intergenic | 30.0% |
| AGTTCTCTATTCTTATAACC+AGG | + | chr4_3:55601729-55601748 | Msa0649000:intron | 30.0% | |
| GTTCTCTATTCTTATAACCA+GGG | + | chr4_3:55601730-55601749 | Msa0649000:intron | 30.0% | |
| AGTTCTTTCTTCTTATAACC+AGG | + | chr4_3:55601775-55601794 | Msa0649000:intron | 30.0% | |
| GTTCTTTCTTCTTATAACCA+GGG | + | chr4_3:55601776-55601795 | Msa0649000:intron | 30.0% | |
| TGATAACTTAGAAAAGCCAA+GGG | - | chr4_3:55601897-55601916 | None:intergenic | 30.0% | |
| ATGATAACTTAGAAAAGCCA+AGG | - | chr4_3:55601898-55601917 | None:intergenic | 30.0% | |
| AAATATGCATATTCCAAGCT+GGG | - | chr4_3:55601984-55602003 | None:intergenic | 30.0% | |
| TCTTTATTGTAGCATATGCT+AGG | - | chr4_3:55602021-55602040 | None:intergenic | 30.0% | |
| TCTAATTATAATACTCCCTC+CGG | + | chr4_3:55602229-55602248 | Msa0649000:intron | 30.0% | |
| GTCAACTTTCTCTTGTAAAT+AGG | - | chr4_3:55602256-55602275 | None:intergenic | 30.0% | |
| !!! | AGCAACTTTTGAAATTTTCG+AGG | + | chr4_3:55602560-55602579 | Msa0649000:intron | 30.0% |
| !! | AAATTTTCGAGGAGTTTGTA+TGG | + | chr4_3:55602571-55602590 | Msa0649000:intron | 30.0% |
| !! | AATTTTCGAGGAGTTTGTAT+GGG | + | chr4_3:55602572-55602591 | Msa0649000:intron | 30.0% |
| CTGAAAATTTACACAACCAA+TGG | - | chr4_3:55603068-55603087 | None:intergenic | 30.0% | |
| !! | CATTGGTTGTGTAAATTTTC+AGG | + | chr4_3:55603066-55603085 | Msa0649000:intron | 30.0% |
| !! | TTACTTTTGCTATGTGTAGT+AGG | + | chr4_3:55603135-55603154 | Msa0649000:intron | 30.0% |
| TTAAAATTCAGCACAAGGTT+AGG | - | chr4_3:55603288-55603307 | None:intergenic | 30.0% | |
| !! | TCTTTTTAGTGTAGAAACTG+AGG | + | chr4_3:55603308-55603327 | Msa0649000:intron | 30.0% |
| TGAATACAAAAATCAAGGCA+AGG | - | chr4_3:55603438-55603457 | None:intergenic | 30.0% | |
| AAAACTTCCATAACAAGCTT+TGG | + | chr4_3:55603605-55603624 | Msa0649000:intron | 30.0% | |
| !! | TAAATAGCCAAAGCTTGTTA+TGG | - | chr4_3:55603615-55603634 | None:intergenic | 30.0% |
| ! | TAACAAGCTTTGGCTATTTA+TGG | + | chr4_3:55603615-55603634 | Msa0649000:intron | 30.0% |
| ! | GTTCCAATATCTAATGGATA+AGG | + | chr4_3:55603714-55603733 | Msa0649000:intron | 30.0% |
| !! | GAAGTTATTTCTTAGTCTTC+AGG | + | chr4_3:55603760-55603779 | Msa0649000:intron | 30.0% |
| AGGTATTTAGCAAGTGAAAA+TGG | + | chr4_3:55603780-55603799 | Msa0649000:intron | 30.0% | |
| GGTATTTAGCAAGTGAAAAT+GGG | + | chr4_3:55603781-55603800 | Msa0649000:intron | 30.0% | |
| GATACCTTCAAATATTTAGC+AGG | - | chr4_3:55603810-55603829 | None:intergenic | 30.0% | |
| AAACATAATTTAGCAGTAGG+CGG | + | chr4_3:55603838-55603857 | Msa0649000:intron | 30.0% | |
| ATACAAGTAATGTTAATGCC+TGG | + | chr4_3:55603882-55603901 | Msa0649000:intron | 30.0% | |
| AGTTTCTTTACTCTTCTGTA+TGG | + | chr4_3:55604018-55604037 | Msa0649000:intron | 30.0% | |
| GCATAAACAAAATGCAACAA+GGG | - | chr4_3:55604159-55604178 | None:intergenic | 30.0% | |
| TGCATAAACAAAATGCAACA+AGG | - | chr4_3:55604160-55604179 | None:intergenic | 30.0% | |
| ! | TTTTGCAGTCTAATCAACAA+CGG | + | chr4_3:55604227-55604246 | Msa0649000:intron | 30.0% |
| ! | TTATGTTTTATAGGTGTAGC+AGG | + | chr4_3:55604572-55604591 | Msa0649000:CDS | 30.0% |
| AGAAGGATTGAGTGAAAATG+GGG | + | chr4_3:55599538-55599557 | Msa0649000:five_prime_UTR | 35.0% | |
| !! | AGAAAAGAAGGTTGATGATG+GGG | - | chr4_3:55599613-55599632 | None:intergenic | 35.0% |
| !! | GAGAAAAGAAGGTTGATGAT+GGG | - | chr4_3:55599614-55599633 | None:intergenic | 35.0% |
| !! | TGAGAAAAGAAGGTTGATGA+TGG | - | chr4_3:55599615-55599634 | None:intergenic | 35.0% |
| GGTAAATTGATGTGACGTTA+GGG | - | chr4_3:55599704-55599723 | None:intergenic | 35.0% | |
| !! | TCAATTTTTGAAGGTCACCA+TGG | - | chr4_3:55599879-55599898 | None:intergenic | 35.0% |
| AAAATCGGGATTAGAAACAG+AGG | - | chr4_3:55599926-55599945 | None:intergenic | 35.0% | |
| ATGGCTATTATGCTCTTCAA+TGG | + | chr4_3:55599947-55599966 | Msa0649000:CDS | 35.0% | |
| TGGCTATTATGCTCTTCAAT+GGG | + | chr4_3:55599948-55599967 | Msa0649000:CDS | 35.0% | |
| !! | TGGTTGATGAGCTTTAGTTA+AGG | + | chr4_3:55600157-55600176 | Msa0649000:intron | 35.0% |
| ! | AGCTTTAGTTAAGGACGAAT+CGG | + | chr4_3:55600166-55600185 | Msa0649000:intron | 35.0% |
| AGAACTAAGTTTCAATCCGT+AGG | + | chr4_3:55600191-55600210 | Msa0649000:intron | 35.0% | |
| GAACTAAGTTTCAATCCGTA+GGG | + | chr4_3:55600192-55600211 | Msa0649000:intron | 35.0% | |
| TAAAGACCTCATGCTACAAA+CGG | + | chr4_3:55600356-55600375 | Msa0649000:CDS | 35.0% | |
| GTTGAAGCTGCTGATATAAA+TGG | + | chr4_3:55600447-55600466 | Msa0649000:CDS | 35.0% | |
| CTGCTGATATAAATGGATAC+AGG | + | chr4_3:55600454-55600473 | Msa0649000:CDS | 35.0% | |
| TTGGTATACAGTTGCAATTC+AGG | - | chr4_3:55600739-55600758 | None:intergenic | 35.0% | |
| TACACACACATAGATAGAGT+TGG | + | chr4_3:55600970-55600989 | Msa0649000:intron | 35.0% | |
| ! | TAGGCTTTTAGATGTTCTGT+CGG | + | chr4_3:55601118-55601137 | Msa0649000:intron | 35.0% |
| GTTCATGTTGATGCACAATA+TGG | + | chr4_3:55601244-55601263 | Msa0649000:CDS | 35.0% | |
| ! | TTTGATGTGCCTGATAATGA+TGG | + | chr4_3:55601313-55601332 | Msa0649000:CDS | 35.0% |
| TTTATGGCATACCAATGTAG+AGG | - | chr4_3:55601346-55601365 | None:intergenic | 35.0% | |
| TAACCAATAATATTGGGGTG+GGG | - | chr4_3:55601660-55601679 | None:intergenic | 35.0% | |
| CATAACCAATAATATTGGGG+TGG | - | chr4_3:55601662-55601681 | None:intergenic | 35.0% | |
| !! | CAACAAATGTAGTTTGCTGA+AGG | - | chr4_3:55601685-55601704 | None:intergenic | 35.0% |
| CTATTTAGAGATGCAAGTCA+AGG | + | chr4_3:55601837-55601856 | Msa0649000:CDS | 35.0% | |
| CAAGGAAGACAAGATAAAGA+TGG | + | chr4_3:55601855-55601874 | Msa0649000:CDS | 35.0% | |
| CAAATATGCATATTCCAAGC+TGG | - | chr4_3:55601985-55602004 | None:intergenic | 35.0% | |
| ! | TTTAGAGTTGAGTACTAGAC+AGG | + | chr4_3:55602063-55602082 | Msa0649000:intron | 35.0% |
| !! | TGCTTTCTTTTTCTAGTGTG+AGG | + | chr4_3:55602184-55602203 | Msa0649000:intron | 35.0% |
| CTTTCTCTTGTAAATAGGAC+CGG | - | chr4_3:55602251-55602270 | None:intergenic | 35.0% | |
| TTGTCTCTTGTAAATAGGAC+CGG | + | chr4_3:55602360-55602379 | Msa0649000:intron | 35.0% | |
| !! | GAGAGGTGTTCAAAAAACAA+TGG | - | chr4_3:55602441-55602460 | None:intergenic | 35.0% |
| !! | ATTTTCGAGGAGTTTGTATG+GGG | + | chr4_3:55602573-55602592 | Msa0649000:intron | 35.0% |
| TCAATACAATGGTACGTACA+AGG | - | chr4_3:55603040-55603059 | None:intergenic | 35.0% | |
| ! | TACGTACCATTGTATTGATG+AGG | + | chr4_3:55603042-55603061 | Msa0649000:intron | 35.0% |
| TGTAGAAACTGAGGAAAGTA+AGG | + | chr4_3:55603317-55603336 | Msa0649000:intron | 35.0% | |
| !! | TTTTTAGGGAAATTCATGGG+AGG | - | chr4_3:55603472-55603491 | None:intergenic | 35.0% |
| ! | AGGCCTTATCCATTAGATAT+TGG | - | chr4_3:55603720-55603739 | None:intergenic | 35.0% |
| AATAACTTCTTTCGCACTCA+AGG | - | chr4_3:55603749-55603768 | None:intergenic | 35.0% | |
| GATGCCTGCTAAATATTTGA+AGG | + | chr4_3:55603803-55603822 | Msa0649000:intron | 35.0% | |
| TATCTGTCAGTCAAGGTTAA+AGG | - | chr4_3:55603970-55603989 | None:intergenic | 35.0% | |
| ATCTATCTATCTGTCAGTCA+AGG | - | chr4_3:55603977-55603996 | None:intergenic | 35.0% | |
| TCTGTATGGTGAAGAAAAAG+AGG | + | chr4_3:55604032-55604051 | Msa0649000:intron | 35.0% | |
| CTGTATGGTGAAGAAAAAGA+GGG | + | chr4_3:55604033-55604052 | Msa0649000:intron | 35.0% | |
| TGTATGGTGAAGAAAAAGAG+GGG | + | chr4_3:55604034-55604053 | Msa0649000:intron | 35.0% | |
| !! | AAAGAGGGGTATCTTATATC+TGG | + | chr4_3:55604048-55604067 | Msa0649000:intron | 35.0% |
| GAACCATCATTCTTTGCTTT+CGG | + | chr4_3:55604115-55604134 | Msa0649000:intron | 35.0% | |
| TATCCGAAAGCAAAGAATGA+TGG | - | chr4_3:55604121-55604140 | None:intergenic | 35.0% | |
| TTTGCTTTCGGATATTGCAT+GGG | + | chr4_3:55604127-55604146 | Msa0649000:intron | 35.0% | |
| TTTGCAGTCTAATCAACAAC+GGG | + | chr4_3:55604228-55604247 | Msa0649000:intron | 35.0% | |
| CAACAACTGAATTGATGAAG+AGG | - | chr4_3:55604351-55604370 | None:intergenic | 35.0% | |
| TTCATCAATTCAGTTGTTGC+AGG | + | chr4_3:55604352-55604371 | Msa0649000:CDS | 35.0% | |
| TAGGAGCTGGCAAAAATTAA+TGG | - | chr4_3:55604480-55604499 | None:intergenic | 35.0% | |
| GAAGGATTGAGTGAAAATGG+GGG | + | chr4_3:55599539-55599558 | Msa0649000:five_prime_UTR | 40.0% | |
| !! | GAAAAGAAGGTTGATGATGG+GGG | - | chr4_3:55599612-55599631 | None:intergenic | 40.0% |
| TGTGACGTTAGGGTTTGAAA+GGG | - | chr4_3:55599694-55599713 | None:intergenic | 40.0% | |
| ATGTGACGTTAGGGTTTGAA+AGG | - | chr4_3:55599695-55599714 | None:intergenic | 40.0% | |
| GGGTAAATTGATGTGACGTT+AGG | - | chr4_3:55599705-55599724 | None:intergenic | 40.0% | |
| !! | TTTTTGAAGGTCACCATGGA+TGG | - | chr4_3:55599875-55599894 | None:intergenic | 40.0% |
| !! | GAATGAGATAGTGGACAATG+TGG | - | chr4_3:55599993-55600012 | None:intergenic | 40.0% |
| CATTGTCCACTATCTCATTC+AGG | + | chr4_3:55599993-55600012 | Msa0649000:CDS | 40.0% | |
| GTAGTACCTGAATGAGATAG+TGG | - | chr4_3:55600002-55600021 | None:intergenic | 40.0% | |
| GCTTTAGTTAAGGACGAATC+GGG | + | chr4_3:55600167-55600186 | Msa0649000:intron | 40.0% | |
| !!! | GTGTGGCATATTTTGAAGCA+TGG | + | chr4_3:55600318-55600337 | Msa0649000:intron | 40.0% |
| !! | GAGGTCTTTAGCATTGACAT+CGG | - | chr4_3:55600346-55600365 | None:intergenic | 40.0% |
| TGCTACAAACGGCTTTACAT+TGG | + | chr4_3:55600367-55600386 | Msa0649000:CDS | 40.0% | |
| GCTACAAACGGCTTTACATT+GGG | + | chr4_3:55600368-55600387 | Msa0649000:CDS | 40.0% | |
| AGGAGTTATCAGTTGACAAG+TGG | - | chr4_3:55600674-55600693 | None:intergenic | 40.0% | |
| TGTCAACTGATAACTCCTAG+CGG | + | chr4_3:55600676-55600695 | Msa0649000:intron | 40.0% | |
| AGGTACATGAACTCGGATAT+GGG | - | chr4_3:55600719-55600738 | None:intergenic | 40.0% | |
| GCAATTCAGGTACATGAACT+CGG | - | chr4_3:55600726-55600745 | None:intergenic | 40.0% | |
| !! | AGAAGCACTCAAGTCTTGTT+TGG | + | chr4_3:55600998-55601017 | Msa0649000:intron | 40.0% |
| !! | GAAGCACTCAAGTCTTGTTT+GGG | + | chr4_3:55600999-55601018 | Msa0649000:intron | 40.0% |
| ! | ATGTGCCTGATAATGATGGA+AGG | + | chr4_3:55601317-55601336 | Msa0649000:CDS | 40.0% |
| AACCAATAATATTGGGGTGG+GGG | - | chr4_3:55601659-55601678 | None:intergenic | 40.0% | |
| ! | TATACTGTGCTGATATCCCT+TGG | + | chr4_3:55601878-55601897 | Msa0649000:intron | 40.0% |
| ATATTTGGTAAAGCCCAGCT+TGG | + | chr4_3:55601968-55601987 | Msa0649000:intron | 40.0% | |
| GATAAAACATGTACTCCCTC+CGG | - | chr4_3:55602382-55602401 | None:intergenic | 40.0% | |
| TTGAACACCTCTCGAATACT+AGG | + | chr4_3:55602448-55602467 | Msa0649000:intron | 40.0% | |
| AACTCAACCTAGTATTCGAG+AGG | - | chr4_3:55602458-55602477 | None:intergenic | 40.0% | |
| !! | ATCTTGTAGTTGCTGGTTCA+AGG | + | chr4_3:55602523-55602542 | Msa0649000:intron | 40.0% |
| !! | TCTTGTAGTTGCTGGTTCAA+GGG | + | chr4_3:55602524-55602543 | Msa0649000:intron | 40.0% |
| TTAATGCTGCCCAATGCAAT+GGG | - | chr4_3:55602887-55602906 | None:intergenic | 40.0% | |
| ATTGCATTGGGCAGCATTAA+GGG | + | chr4_3:55602887-55602906 | Msa0649000:CDS | 40.0% | |
| TGGGACAAAGGAAGAATTGA+CGG | + | chr4_3:55602944-55602963 | Msa0649000:CDS | 40.0% | |
| AAAGGAAGAATTGACGGTGA+AGG | + | chr4_3:55602950-55602969 | Msa0649000:CDS | 40.0% | |
| TTATCATATGCAAGCTGCAC+AGG | - | chr4_3:55602993-55603012 | None:intergenic | 40.0% | |
| GTGCAGCTTGCATATGATAA+AGG | + | chr4_3:55602993-55603012 | Msa0649000:CDS | 40.0% | |
| CAATGGCCTCATCAATACAA+TGG | - | chr4_3:55603051-55603070 | None:intergenic | 40.0% | |
| ! | CATTGTATTGATGAGGCCAT+TGG | + | chr4_3:55603049-55603068 | Msa0649000:intron | 40.0% |
| TGCTATGTGTAGTAGGCAAT+AGG | + | chr4_3:55603142-55603161 | Msa0649000:intron | 40.0% | |
| !! | CAGCTTATGCTTTGGGAAAA+TGG | - | chr4_3:55603180-55603199 | None:intergenic | 40.0% |
| TCCCAAAGCATAAGCTGTTA+AGG | + | chr4_3:55603183-55603202 | Msa0649000:intron | 40.0% | |
| GCCTTAACAGCTTATGCTTT+GGG | - | chr4_3:55603187-55603206 | None:intergenic | 40.0% | |
| TGCCTTAACAGCTTATGCTT+TGG | - | chr4_3:55603188-55603207 | None:intergenic | 40.0% | |
| AAGCTGTTAAGGCATATCAC+TGG | + | chr4_3:55603194-55603213 | Msa0649000:intron | 40.0% | |
| TACACAATAGCCCTTTAGCT+TGG | + | chr4_3:55603239-55603258 | Msa0649000:intron | 40.0% | |
| AATTCAGCACAAGGTTAGGT+AGG | - | chr4_3:55603284-55603303 | None:intergenic | 40.0% | |
| ! | ATCTAATGGATAAGGCCTAG+CGG | + | chr4_3:55603722-55603741 | Msa0649000:intron | 40.0% |
| CTTTGCTTTCGGATATTGCA+TGG | + | chr4_3:55604126-55604145 | Msa0649000:intron | 40.0% | |
| AATAAAGTTTGCCTCTCCAG+TGG | - | chr4_3:55604264-55604283 | None:intergenic | 40.0% | |
| TGGAGAGGCAAACTTTATTG+TGG | + | chr4_3:55604265-55604284 | Msa0649000:CDS | 40.0% | |
| GGAGAGGCAAACTTTATTGT+GGG | + | chr4_3:55604266-55604285 | Msa0649000:CDS | 40.0% | |
| AGGCAAACTTTATTGTGGGT+TGG | + | chr4_3:55604270-55604289 | Msa0649000:CDS | 40.0% | |
| !!! | ACCTTTTTAAGGTTAGGAGC+TGG | - | chr4_3:55604493-55604512 | None:intergenic | 40.0% |
| !!! | GCGGTAACCTTTTTAAGGTT+AGG | - | chr4_3:55604499-55604518 | None:intergenic | 40.0% |
| CTTCCTGAGTCTTCTTGCAA+TGG | + | chr4_3:55599762-55599781 | Msa0649000:exon | 45.0% | |
| AAGCCATTGCAAGAAGACTC+AGG | - | chr4_3:55599768-55599787 | None:intergenic | 45.0% | |
| !! | TGAGATAGTGGACAATGTGG+TGG | - | chr4_3:55599990-55600009 | None:intergenic | 45.0% |
| TGTGTGATTATGGGTCATGC+TGG | + | chr4_3:55600108-55600127 | Msa0649000:intron | 45.0% | |
| GTAAAGCCGTTTGTAGCATG+AGG | - | chr4_3:55600365-55600384 | None:intergenic | 45.0% | |
| ACAAACGGCTTTACATTGGG+CGG | + | chr4_3:55600371-55600390 | Msa0649000:CDS | 45.0% | |
| ATAGATGTTACCAGTCAGGC+AGG | + | chr4_3:55600576-55600595 | Msa0649000:intron | 45.0% | |
| ! | GTTGACTTCAGTTTACCGCT+AGG | - | chr4_3:55600694-55600713 | None:intergenic | 45.0% |
| TACATGAACTCGGATATGGG+TGG | - | chr4_3:55600716-55600735 | None:intergenic | 45.0% | |
| CAGGTACATGAACTCGGATA+TGG | - | chr4_3:55600720-55600739 | None:intergenic | 45.0% | |
| CAGGCACATCAAAATCAGCA+TGG | - | chr4_3:55601306-55601325 | None:intergenic | 45.0% | |
| GGACTCCTTCCATCATTATC+AGG | - | chr4_3:55601325-55601344 | None:intergenic | 45.0% | |
| ATGGAAGGAGTCCTCTACAT+TGG | + | chr4_3:55601332-55601351 | Msa0649000:CDS | 45.0% | |
| ACCAATAATATTGGGGTGGG+GGG | - | chr4_3:55601658-55601677 | None:intergenic | 45.0% | |
| AACTAAGTAAAACGCAGCCC+TGG | - | chr4_3:55601750-55601769 | None:intergenic | 45.0% | |
| TATAACCAGGGCTGCGTATA+AGG | + | chr4_3:55601788-55601807 | Msa0649000:intron | 45.0% | |
| ATAACCAGGGCTGCGTATAA+GGG | + | chr4_3:55601789-55601808 | Msa0649000:intron | 45.0% | |
| CTCTTGTAAATAGGACCGGA+GGG | - | chr4_3:55602364-55602383 | None:intergenic | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | - | chr4_3:55602363-55602382 | None:intergenic | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | + | chr4_3:55602363-55602382 | Msa0649000:intron | 45.0% | |
| CTCTTGTAAATAGGACCGGA+GGG | + | chr4_3:55602364-55602383 | Msa0649000:intron | 45.0% | |
| !! | CTTGTAGTTGCTGGTTCAAG+GGG | + | chr4_3:55602525-55602544 | Msa0649000:intron | 45.0% |
| TAATGCTGCCCAATGCAATG+GGG | - | chr4_3:55602886-55602905 | None:intergenic | 45.0% | |
| CTTAATGCTGCCCAATGCAA+TGG | - | chr4_3:55602888-55602907 | None:intergenic | 45.0% | |
| CATTGCATTGGGCAGCATTA+AGG | + | chr4_3:55602886-55602905 | Msa0649000:CDS | 45.0% | |
| TTGCATTGGGCAGCATTAAG+GGG | + | chr4_3:55602888-55602907 | Msa0649000:CDS | 45.0% | |
| AGCATTAAGGGGACATTCAG+AGG | + | chr4_3:55602899-55602918 | Msa0649000:CDS | 45.0% | |
| AGGTCATCAAAATGTCGCCA+AGG | + | chr4_3:55603013-55603032 | Msa0649000:CDS | 45.0% | |
| AATGGTACGTACAAGGACCT+TGG | - | chr4_3:55603033-55603052 | None:intergenic | 45.0% | |
| GCTAAAGGGCTATTGTGTAC+TGG | - | chr4_3:55603238-55603257 | None:intergenic | 45.0% | |
| TGTCCATGCTCCAAGCTAAA+GGG | - | chr4_3:55603252-55603271 | None:intergenic | 45.0% | |
| TTGTCCATGCTCCAAGCTAA+AGG | - | chr4_3:55603253-55603272 | None:intergenic | 45.0% | |
| GAGGAAAGTAAGGCTACTCT+AGG | + | chr4_3:55603327-55603346 | Msa0649000:intron | 45.0% | |
| CTACTCTAGGCTTCGTTGAT+CGG | + | chr4_3:55603340-55603359 | Msa0649000:intron | 45.0% | |
| GATACTGTGCCATGAACAAC+CGG | + | chr4_3:55603372-55603391 | Msa0649000:intron | 45.0% | |
| ! | AACAACCGGCTCAGAAACTA+TGG | + | chr4_3:55603386-55603405 | Msa0649000:intron | 45.0% |
| GTTAGCCATAGTTTCTGAGC+CGG | - | chr4_3:55603394-55603413 | None:intergenic | 45.0% | |
| CATAATTTAGCAGTAGGCGG+TGG | + | chr4_3:55603841-55603860 | Msa0649000:intron | 45.0% | |
| !! | TGTGGGTTGGTGACAGATAT+TGG | + | chr4_3:55604283-55604302 | Msa0649000:CDS | 45.0% |
| GCCAGCTCCTAACCTTAAAA+AGG | + | chr4_3:55604489-55604508 | Msa0649000:intron | 45.0% | |
| ! | CAGCAGCGGTAACCTTTTTA+AGG | - | chr4_3:55604504-55604523 | None:intergenic | 45.0% |
| AAAAAGGTTACCGCTGCTGT+TGG | + | chr4_3:55604505-55604524 | Msa0649000:CDS | 45.0% | |
| ! | TTACCGCTGCTGTTGGATTT+TGG | + | chr4_3:55604512-55604531 | Msa0649000:CDS | 45.0% |
| TGACCAAAATCCAACAGCAG+CGG | - | chr4_3:55604518-55604537 | None:intergenic | 45.0% | |
| !! | CTGCTGTTGGATTTTGGTCA+TGG | + | chr4_3:55604518-55604537 | Msa0649000:CDS | 45.0% |
| ATAGCTCTCTCTTCATCTGC+TGG | + | chr4_3:55604541-55604560 | Msa0649000:CDS | 45.0% | |
| !!! | TTTTAATTTCTTTTTTATTT+TGG | + | chr4_3:55602801-55602820 | Msa0649000:intron | 5.0% |
| !!! | TTTAATTTCTTTTTTATTTT+GGG | + | chr4_3:55602802-55602821 | Msa0649000:intron | 5.0% |
| !!! | TTGATTTATTTTTATTTTTA+GGG | - | chr4_3:55603486-55603505 | None:intergenic | 5.0% |
| !!! | ATTGATTTATTTTTATTTTT+AGG | - | chr4_3:55603487-55603506 | None:intergenic | 5.0% |
| !! | TAAAAATAAAAATAAATCAA+TGG | + | chr4_3:55603486-55603505 | Msa0649000:intron | 5.0% |
| !! | AAAAATAAAAATAAATCAAT+GGG | + | chr4_3:55603487-55603506 | Msa0649000:intron | 5.0% |
| GGATTGAGTGAAAATGGGGG+AGG | + | chr4_3:55599542-55599561 | Msa0649000:five_prime_UTR | 50.0% | |
| !! | AAGAAGGTTGATGATGGGGG+TGG | - | chr4_3:55599609-55599628 | None:intergenic | 50.0% |
| GCTGTGAAGACGTCGAGTAT+GGG | - | chr4_3:55599850-55599869 | None:intergenic | 50.0% | |
| AGCTGTGAAGACGTCGAGTA+TGG | - | chr4_3:55599851-55599870 | None:intergenic | 50.0% | |
| GTCTTCACAGCTTCCATCCA+TGG | + | chr4_3:55599859-55599878 | Msa0649000:CDS | 50.0% | |
| GCTGATGTGCTCTTGGAGAA+TGG | + | chr4_3:55600417-55600436 | Msa0649000:CDS | 50.0% | |
| TGCTCTTGGAGAATGGTGCT+CGG | + | chr4_3:55600424-55600443 | Msa0649000:CDS | 50.0% | |
| AATAATATTGGGGTGGGGGG+GGG | - | chr4_3:55601655-55601674 | None:intergenic | 50.0% | |
| CAATAATATTGGGGTGGGGG+GGG | - | chr4_3:55601656-55601675 | None:intergenic | 50.0% | |
| CCAATAATATTGGGGTGGGG+GGG | - | chr4_3:55601657-55601676 | None:intergenic | 50.0% | |
| AAATCCCTTATACGCAGCCC+TGG | - | chr4_3:55601796-55601815 | None:intergenic | 50.0% | |
| ! | TAGGTGCTACCCCATTGCAT+TGG | + | chr4_3:55602874-55602893 | Msa0649000:intron | 50.0% |
| ! | AGGTGCTACCCCATTGCATT+GGG | + | chr4_3:55602875-55602894 | Msa0649000:intron | 50.0% |
| TTGACGGTGAAGGACAATGC+AGG | + | chr4_3:55602960-55602979 | Msa0649000:CDS | 50.0% | |
| !! | TAGCCCTTTAGCTTGGAGCA+TGG | + | chr4_3:55603246-55603265 | Msa0649000:intron | 50.0% |
| GTTTCTGAGCCGGTTGTTCA+TGG | - | chr4_3:55603384-55603403 | None:intergenic | 50.0% | |
| CCATTGATACGTAGCGTACC+AGG | - | chr4_3:55603903-55603922 | None:intergenic | 50.0% | |
| CCTGGTACGCTACGTATCAA+TGG | + | chr4_3:55603900-55603919 | Msa0649000:intron | 50.0% | |
| AGCTGCTGTTCTTGGGGCTT+CGG | - | chr4_3:55599823-55599842 | None:intergenic | 55.0% | |
| GGAGGTAGCTGCTGTTCTTG+GGG | - | chr4_3:55599829-55599848 | None:intergenic | 55.0% | |
| GGGAGGTAGCTGCTGTTCTT+GGG | - | chr4_3:55599830-55599849 | None:intergenic | 55.0% | |
| TGGGAGGTAGCTGCTGTTCT+TGG | - | chr4_3:55599831-55599850 | None:intergenic | 55.0% | |
| GTGAAGACGTCGAGTATGGG+AGG | - | chr4_3:55599847-55599866 | None:intergenic | 55.0% | |
| TTACATTGGGCGGCAGTTCG+CGG | + | chr4_3:55600381-55600400 | Msa0649000:CDS | 55.0% | |
| GCTCTTGGAGAATGGTGCTC+GGG | + | chr4_3:55600425-55600444 | Msa0649000:CDS | 55.0% | |
| ATGTTACCAGTCAGGCAGGC+AGG | + | chr4_3:55600580-55600599 | Msa0649000:intron | 55.0% | |
| ATAATATTGGGGTGGGGGGG+GGG | - | chr4_3:55601654-55601673 | None:intergenic | 55.0% | |
| CCCCCCCACCCCAATATTAT+TGG | + | chr4_3:55601654-55601673 | Msa0649000:intron | 55.0% | |
| GGTTCAAGGGGTCTGTATGC+TGG | + | chr4_3:55602537-55602556 | Msa0649000:intron | 55.0% | |
| TGTGCTGTGCTTGTGCATGC+TGG | + | chr4_3:55602924-55602943 | Msa0649000:CDS | 55.0% | |
| GTGCTGTGCTTGTGCATGCT+GGG | + | chr4_3:55602925-55602944 | Msa0649000:CDS | 55.0% | |
| GCTTGTGCATGCTGGGACAA+AGG | + | chr4_3:55602932-55602951 | Msa0649000:CDS | 55.0% | |
| TTTCGCACTCAAGGACCGCT+AGG | - | chr4_3:55603740-55603759 | None:intergenic | 55.0% | |
| ! | AACGGGCTCATAGCAACCAC+TGG | + | chr4_3:55604245-55604264 | Msa0649000:CDS | 55.0% |
| GCTCATAGCAACCACTGGAG+AGG | + | chr4_3:55604250-55604269 | Msa0649000:CDS | 55.0% | |
| GGCAGCTGCTGATGTGCTCT+TGG | + | chr4_3:55600410-55600429 | Msa0649000:CDS | 60.0% | |
| TAATATTGGGGTGGGGGGGG+GGG | - | chr4_3:55601653-55601672 | None:intergenic | 60.0% | |
| CAGTCAGGCAGGCAGGCGTT+GGG | + | chr4_3:55600587-55600606 | Msa0649000:intron | 65.0% | |
| ! | AGTCAGGCAGGCAGGCGTTG+GGG | + | chr4_3:55600588-55600607 | Msa0649000:intron | 65.0% |
| AATATTGGGGTGGGGGGGGG+GGG | - | chr4_3:55601652-55601671 | None:intergenic | 65.0% | |
| GGCGGCAGTTCGCGGTGCAA+TGG | + | chr4_3:55600389-55600408 | Msa0649000:CDS | 70.0% | |
| CCAACGCCTGCCTGCCTGAC+TGG | - | chr4_3:55600589-55600608 | None:intergenic | 70.0% | |
| CCAGTCAGGCAGGCAGGCGT+TGG | + | chr4_3:55600586-55600605 | Msa0649000:intron | 70.0% | |
| !! | GTCAGGCAGGCAGGCGTTGG+GGG | + | chr4_3:55600589-55600608 | Msa0649000:intron | 70.0% |
| ATATTGGGGTGGGGGGGGGG+GGG | - | chr4_3:55601651-55601670 | None:intergenic | 70.0% | |
| TATTGGGGTGGGGGGGGGGG+GGG | - | chr4_3:55601650-55601669 | None:intergenic | 75.0% | |
| ! | GGGGGGGGGGGGGGGGATTT+AGG | - | chr4_3:55601640-55601659 | None:intergenic | 80.0% |
| ! | ATTGGGGTGGGGGGGGGGGG+GGG | - | chr4_3:55601649-55601668 | None:intergenic | 80.0% |
| ! | TTGGGGTGGGGGGGGGGGGG+GGG | - | chr4_3:55601648-55601667 | None:intergenic | 85.0% |
| ! | TGGGGTGGGGGGGGGGGGGG+GGG | - | chr4_3:55601647-55601666 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55599498 | 55604607 | 55599498 | ID=Msa0649000;Name=Msa0649000 |
| chr4_3 | mRNA | 55599498 | 55604607 | 55599498 | ID=Msa0649000-mRNA-1;Parent=Msa0649000;Name=Msa0649000-mRNA-1;_AED=0.14;_eAED=0.14;_QI=283|1|1|1|1|0.85|7|10|324 |
| chr4_3 | exon | 55599498 | 55600014 | 55599498 | ID=Msa0649000-mRNA-1:exon:14285;Parent=Msa0649000-mRNA-1 |
| chr4_3 | exon | 55600336 | 55600476 | 55600336 | ID=Msa0649000-mRNA-1:exon:14286;Parent=Msa0649000-mRNA-1 |
| chr4_3 | exon | 55601241 | 55601353 | 55601241 | ID=Msa0649000-mRNA-1:exon:14287;Parent=Msa0649000-mRNA-1 |
| chr4_3 | exon | 55601797 | 55601876 | 55601797 | ID=Msa0649000-mRNA-1:exon:14288;Parent=Msa0649000-mRNA-1 |
| chr4_3 | exon | 55602877 | 55603040 | 55602877 | ID=Msa0649000-mRNA-1:exon:14289;Parent=Msa0649000-mRNA-1 |
| chr4_3 | exon | 55604235 | 55604373 | 55604235 | ID=Msa0649000-mRNA-1:exon:14290;Parent=Msa0649000-mRNA-1 |
| chr4_3 | exon | 55604494 | 55604607 | 55604494 | ID=Msa0649000-mRNA-1:exon:14291;Parent=Msa0649000-mRNA-1 |
| chr4_3 | five_prime_UTR | 55599498 | 55599780 | 55599498 | ID=Msa0649000-mRNA-1:five_prime_utr;Parent=Msa0649000-mRNA-1 |
| chr4_3 | CDS | 55599781 | 55600014 | 55599781 | ID=Msa0649000-mRNA-1:cds;Parent=Msa0649000-mRNA-1 |
| chr4_3 | CDS | 55600336 | 55600476 | 55600336 | ID=Msa0649000-mRNA-1:cds;Parent=Msa0649000-mRNA-1 |
| chr4_3 | CDS | 55601241 | 55601353 | 55601241 | ID=Msa0649000-mRNA-1:cds;Parent=Msa0649000-mRNA-1 |
| chr4_3 | CDS | 55601797 | 55601876 | 55601797 | ID=Msa0649000-mRNA-1:cds;Parent=Msa0649000-mRNA-1 |
| chr4_3 | CDS | 55602877 | 55603040 | 55602877 | ID=Msa0649000-mRNA-1:cds;Parent=Msa0649000-mRNA-1 |
| chr4_3 | CDS | 55604235 | 55604373 | 55604235 | ID=Msa0649000-mRNA-1:cds;Parent=Msa0649000-mRNA-1 |
| chr4_3 | CDS | 55604494 | 55604597 | 55604494 | ID=Msa0649000-mRNA-1:cds;Parent=Msa0649000-mRNA-1 |
| chr4_3 | three_prime_UTR | 55604598 | 55604607 | 55604598 | ID=Msa0649000-mRNA-1:three_prime_utr;Parent=Msa0649000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
