AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649790 MtrunA17_Chr4g0041761 89.641 753 72 2 1 747 10 762 0.0 1375
Msa0649790 MtrunA17_Chr7g0261561 56.393 743 308 10 4 741 3 734 0.0 828
Msa0649790 MtrunA17_Chr1g0187391 58.763 582 173 8 161 741 3 518 0.0 673
Msa0649790 MtrunA17_Chr5g0408241 43.478 782 378 15 12 745 64 829 0.0 588
Msa0649790 MtrunA17_Chr8g0369761 42.581 775 376 15 19 745 57 810 0.0 563
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649790 AT3G23410.1 58.639 735 286 4 22 744 15 743 0.0 863
Msa0649790 AT3G23410.2 61.004 677 255 3 71 744 5 675 0.0 834
Msa0649790 AT4G28570.1 56.107 745 313 5 2 741 7 742 0.0 830
Msa0649790 AT4G28570.2 56.107 745 313 5 2 741 7 742 0.0 830
Msa0649790 AT1G03990.1 50.066 755 352 11 7 746 13 757 0.0 740
Msa0649790 AT4G19380.2 43.161 753 385 15 18 745 34 768 0.0 553
Msa0649790 AT4G19380.1 43.414 744 378 15 27 745 1 726 0.0 550

Find 156 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCCTTGTTTCTCTCCTTT+TGG 0.180580 4_3:+56512706 None:intergenic
TGATTCAAGAATACTTATTT+TGG 0.221568 4_3:-56513025 Msa0649790:CDS
GAAGAAATGTTTGGGAGTTT+TGG 0.228655 4_3:-56512572 Msa0649790:CDS
CTCGTCAGGGATTGGATATT+TGG 0.232443 4_3:+56514903 None:intergenic
GAGTTCACATTACCATAATT+TGG 0.234565 4_3:+56511112 None:intergenic
CACGAAAATTAACAATCTTA+TGG 0.267649 4_3:+56511239 None:intergenic
CAACTTCTCAAGCTTGTCTT+TGG 0.272508 4_3:-56513665 Msa0649790:CDS
TGATTCCCTGGTGAATTTCT+TGG 0.279412 4_3:+56512757 None:intergenic
GCTTGAGAAGTTGCTGATAA+AGG 0.301467 4_3:+56513675 None:intergenic
ATGGACCAACAATATGAAAA+TGG 0.302883 4_3:-56513066 Msa0649790:CDS
TATTGTGGTTCATGTGGTTA+TGG 0.314221 4_3:-56512733 Msa0649790:CDS
TAAACGAATGCAATTCTAAA+AGG 0.317923 4_3:+56513592 None:intergenic
AATAAAAGATCACCAAATTA+TGG 0.323538 4_3:-56511124 Msa0649790:three_prime_UTR
GTTGATTGAATAGTAATCAT+AGG 0.337491 4_3:+56511314 None:intergenic
ATCTTTCTTTCCTTCTGTGT+GGG 0.341175 4_3:+56515105 None:intergenic
CAACAGAAAGAAGAAATGTT+TGG 0.349734 4_3:-56512581 Msa0649790:CDS
CATTGTTACCAGGTGAGAAT+TGG 0.351996 4_3:-56511487 Msa0649790:CDS
GTTATGAAGTGTGCTGTTCT+TGG 0.357460 4_3:+56511752 None:intergenic
GCACTATATCCATGGGAATC+AGG 0.366958 4_3:-56511806 Msa0649790:CDS
TTCTAGTGATGAATAATCTT+CGG 0.371885 4_3:+56513098 None:intergenic
AGAAAAGGGTGTCAAAATCT+TGG 0.379576 4_3:-56512799 Msa0649790:CDS
TTGGGCACTTTCTTGATTTG+TGG 0.380021 4_3:-56513724 Msa0649790:CDS
GTATACTTCTGCTCATCAAA+TGG 0.389845 4_3:-56511459 Msa0649790:CDS
TTTGAAAATAGTTACAAGAA+TGG 0.393141 4_3:-56512607 Msa0649790:CDS
TATACTTCTGCTCATCAAAT+GGG 0.393187 4_3:-56511458 Msa0649790:CDS
TATCCAATGGCTTTCCATGC+TGG 0.395200 4_3:+56513399 None:intergenic
AACAGAAAGAAGAAATGTTT+GGG 0.405430 4_3:-56512580 Msa0649790:CDS
CAAAATCAAGTATTAAGAAA+AGG 0.411212 4_3:-56512814 Msa0649790:CDS
TCTAGTGATGAATAATCTTC+GGG 0.422485 4_3:+56513099 None:intergenic
TGTGGTTATGGTTGTCCAAA+AGG 0.434505 4_3:-56512721 Msa0649790:CDS
CTTGAGAAGTTGCTGATAAA+GGG 0.437565 4_3:+56513676 None:intergenic
TTCAATTATTGCTCTTGTAT+CGG 0.438986 4_3:+56511859 None:intergenic
CTTGTAGATGCTGTTGAAAA+AGG 0.445193 4_3:-56512670 Msa0649790:CDS
GAAGGTGCTGTTGATGAAAA+TGG 0.445503 4_3:-56511407 Msa0649790:CDS
TTGATGATGATGGTACTCTA+TGG 0.447920 4_3:+56511897 None:intergenic
GTAATTGTTGGTTCTGGCTG+TGG 0.452941 4_3:-56513198 Msa0649790:CDS
GTGGTGGTTCAGCTGTTAAT+TGG 0.455365 4_3:-56512987 Msa0649790:CDS
TGGCTTCTAGCAACGAGGTT+GGG 0.458420 4_3:-56513742 Msa0649790:CDS
ACATACATACATACCTCGTC+AGG 0.461078 4_3:+56514889 None:intergenic
TGCTATGCCTCAGTAAGAAA+TGG 0.464395 4_3:-56513699 Msa0649790:CDS
AAAATCAAGTATTAAGAAAA+GGG 0.465765 4_3:-56512813 Msa0649790:CDS
TCATATTGTTGGTCCATTGA+AGG 0.466560 4_3:+56513072 None:intergenic
AAAGGTGCTGTGATAATAAC+AGG 0.471872 4_3:-56512652 Msa0649790:CDS
CATATTCAGCACTATATCCA+TGG 0.471948 4_3:-56511814 Msa0649790:CDS
TATGTTTCCTTCACTGCCAA+TGG 0.474427 4_3:-56514977 Msa0649790:CDS
GATGCGGTAATTGTTGGTTC+TGG 0.474625 4_3:-56513204 Msa0649790:CDS
TCAAATGGGGAGTTGTAGAA+TGG 0.477133 4_3:-56511444 Msa0649790:CDS
TTGCATTAAAACACCAGAAA+AGG 0.481522 4_3:-56512959 Msa0649790:CDS
GTTGGTTCTGGCTGTGGAGG+AGG 0.482681 4_3:-56513192 Msa0649790:CDS
GGTAACAATGCTCCTTCCAT+TGG 0.483905 4_3:+56511500 None:intergenic
CAGAAAAGGTGTTGAAAGAA+TGG 0.485140 4_3:-56512945 Msa0649790:CDS
CTGAGAATTCTAATAGCAGC+TGG 0.494902 4_3:-56511623 Msa0649790:CDS
CTTGATTCATCATCATCCAT+TGG 0.494921 4_3:+56514961 None:intergenic
TGATGAAAATGGTGAGAGTT+GGG 0.496388 4_3:-56511396 Msa0649790:CDS
CCTAACAGGTAAAGCGAATG+AGG 0.496951 4_3:-56511939 Msa0649790:intron
CATCTTTCTTTCCTTCTGTG+TGG 0.498057 4_3:+56515104 None:intergenic
ATACATACCTCGTCAGGGAT+TGG 0.499058 4_3:+56514895 None:intergenic
CATAGAGTATCTATCTGCTA+TGG 0.499902 4_3:-56512890 Msa0649790:CDS
GCAGGTTCAACAGTAGGTGG+TGG 0.500248 4_3:-56513003 Msa0649790:CDS
CTTTCTTTCCTTCTGTGTGG+GGG 0.500400 4_3:+56515107 None:intergenic
AAATGTGATGCGGTAATTGT+TGG 0.502713 4_3:-56513210 Msa0649790:CDS
TGGAGTCTAGTGTGGCATTG+AGG 0.503710 4_3:+56513253 None:intergenic
ATTGTTGGTTCTGGCTGTGG+AGG 0.505457 4_3:-56513195 Msa0649790:CDS
GAAGATTATTCATCACTAGA+AGG 0.507111 4_3:-56513096 Msa0649790:CDS
AAAGTGGTTGTTCTAGAGAA+AGG 0.509206 4_3:-56513135 Msa0649790:CDS
GAATCATCATTTGATGATGA+TGG 0.513986 4_3:+56511887 None:intergenic
ATCACTAGAAGGTCCTTCAA+TGG 0.515670 4_3:-56513085 Msa0649790:CDS
AGTGTGCTTCCAACTGCTGT+TGG 0.516894 4_3:-56511344 Msa0649790:CDS
TAATGAGAACACTAGCGAAA+AGG 0.517011 4_3:-56511552 Msa0649790:CDS
TCTTTCTTTCCTTCTGTGTG+GGG 0.518154 4_3:+56515106 None:intergenic
TGCTGAGATGTTAGCAAAGA+GGG 0.518378 4_3:-56513803 Msa0649790:CDS
AGAAGAAAACAAAGAGGCAT+AGG 0.523278 4_3:+56513560 None:intergenic
AGAAGGAAAGAAAGATGAGA+AGG 0.523803 4_3:-56515098 Msa0649790:exon
GCAGCTGGAGCAGTTGAAGT+AGG 0.525512 4_3:-56511608 Msa0649790:CDS
AATGAAAATTGTACACAAGA+AGG 0.531263 4_3:-56512841 Msa0649790:CDS
TCATCATCCATTGGCAGTGA+AGG 0.531597 4_3:+56514970 None:intergenic
TTGATTGAATAGTAATCATA+GGG 0.531890 4_3:+56511315 None:intergenic
TGTTGATACTTCATATCCAA+TGG 0.534466 4_3:+56513386 None:intergenic
AATCCAGCATGGAAAGCCAT+TGG 0.536851 4_3:-56513402 Msa0649790:CDS
ATAATTGAAACACCATTACT+AGG 0.540718 4_3:-56511845 Msa0649790:CDS
TATAGATAGTGTTTATCCAA+TGG 0.540962 4_3:-56511516 Msa0649790:CDS
ATGGCTTCTAGCAACGAGGT+TGG 0.542866 4_3:-56513743 Msa0649790:CDS
TTGATGAAAATGGTGAGAGT+TGG 0.551525 4_3:-56511397 Msa0649790:CDS
AAGAGAAAAGATTGTGCAGA+GGG 0.551533 4_3:-56513638 Msa0649790:CDS
CAAATGGGGAGTTGTAGAAT+GGG 0.552016 4_3:-56511443 Msa0649790:CDS
TTCATCCCGTGCTAATGACA+TGG 0.554731 4_3:-56512408 Msa0649790:CDS
GGGTTAACACCAACAGCAGT+TGG 0.556806 4_3:+56511335 None:intergenic
GCTTCTGTCCTATCAAAAGC+TGG 0.558239 4_3:-56513162 Msa0649790:CDS
GAACCACAATAATGATTCCC+TGG 0.558303 4_3:+56512745 None:intergenic
AAACCGCTAGAAATCATCAA+TGG 0.561746 4_3:+56512463 None:intergenic
AATCATTATTGTGGTTCATG+TGG 0.563673 4_3:-56512739 Msa0649790:CDS
TATCCCCATGTCATTAGCAC+GGG 0.567787 4_3:+56512403 None:intergenic
GACAAAGAGAATATGAGAGC+TGG 0.568725 4_3:-56511659 Msa0649790:CDS
GCAAAAGTAACAATTTCAGC+AGG 0.569600 4_3:-56512505 Msa0649790:CDS
TTAGCACGGGATGAAGATGA+AGG 0.570366 4_3:+56512416 None:intergenic
TAGTCTAGTCCTGATTCCCA+TGG 0.571034 4_3:+56511797 None:intergenic
GGTGAGAGTTGGGAAGCTGA+AGG 0.571561 4_3:-56511386 Msa0649790:CDS
GTGAGAGTTGGGAAGCTGAA+GGG 0.574364 4_3:-56511385 Msa0649790:CDS
ATGGAAGGAGCATTGTTACC+AGG 0.577349 4_3:-56511497 Msa0649790:CDS
GACCAACAATATGAAAATGG+AGG 0.578079 4_3:-56513063 Msa0649790:CDS
TCATCCCGTGCTAATGACAT+GGG 0.581174 4_3:-56512407 Msa0649790:CDS
GGGAGTGTCATCCATTGTTG+AGG 0.581648 4_3:-56515077 Msa0649790:CDS
TAGAATGGGAGTGAATGAAA+AGG 0.583569 4_3:-56511429 Msa0649790:CDS
GAAACTGTTTGTGAGAGGAT+TGG 0.583784 4_3:-56512868 Msa0649790:CDS
TCACCAGGGAATCATTATTG+TGG 0.584122 4_3:-56512748 Msa0649790:CDS
TCTCTCACACCCCTCAACAA+TGG 0.586246 4_3:+56515066 None:intergenic
CGATTGAATTCAATTTGTAG+CGG 0.586554 4_3:+56511681 None:intergenic
AACAAGGGACTCAAGTTACA+TGG 0.588903 4_3:-56512693 Msa0649790:CDS
GATAGTGTTTATCCAATGGA+AGG 0.590334 4_3:-56511512 Msa0649790:CDS
TACAAATTCCAATTCTCACC+TGG 0.591010 4_3:+56511479 None:intergenic
TTGGCAGGTTCAACAGTAGG+TGG 0.592216 4_3:-56513006 Msa0649790:CDS
GGAGTGTCATCCATTGTTGA+GGG 0.596554 4_3:-56515076 Msa0649790:CDS
AAAGTAACAATTTCAGCAGG+TGG 0.598692 4_3:-56512502 Msa0649790:CDS
TTCTTGAATCAATAGAAGCT+AGG 0.600875 4_3:+56513037 None:intergenic
GAAGGAAAGAAAGATGAGAA+GGG 0.601594 4_3:-56515097 Msa0649790:exon
GTATCCCCATGTCATTAGCA+CGG 0.602417 4_3:+56512402 None:intergenic
ACCAACAATATGAAAATGGA+GGG 0.602438 4_3:-56513062 Msa0649790:CDS
ATATTCAGCACTATATCCAT+GGG 0.603766 4_3:-56511813 Msa0649790:CDS
CAACAATCTCTATCTAACAA+AGG 0.604364 4_3:-56513276 Msa0649790:CDS
TTGGCGAAGACTTTAAGTAG+TGG 0.611941 4_3:-56512553 Msa0649790:CDS
GGTGGACAAGTAACAACAGA+GGG 0.615575 4_3:-56511710 Msa0649790:CDS
CTATGGAAACTGTTTGTGAG+AGG 0.618097 4_3:-56512873 Msa0649790:CDS
TAAAGGGCCATTTCTTACTG+AGG 0.621637 4_3:+56513692 None:intergenic
CAAATATCCAATCCCTGACG+AGG 0.622503 4_3:-56514902 Msa0649790:intron
TATAGTGCTGAATATGATGA+TGG 0.622796 4_3:+56511821 None:intergenic
TGTCCAAAAGGAGAGAAACA+AGG 0.624436 4_3:-56512709 Msa0649790:CDS
ACAATAATAAGAGACAAAGC+AGG 0.625178 4_3:-56511731 Msa0649790:CDS
ATCAAAAGCTGGCTACAAAG+TGG 0.627865 4_3:-56513151 Msa0649790:CDS
CTAACAGGTAAAGCGAATGA+GGG 0.633458 4_3:-56511938 Msa0649790:intron
GAATCAAAATCAGATCTCAA+AGG 0.635229 4_3:-56512373 Msa0649790:intron
ATGGGAGTGAATGAAAAGGA+AGG 0.638461 4_3:-56511425 Msa0649790:CDS
GAAGTAGGAACACACAGAAG+TGG 0.639178 4_3:-56511593 Msa0649790:CDS
CCCAAGAGAAGAAAACAAAG+AGG 0.641068 4_3:+56513554 None:intergenic
TTGCTGAGATGTTAGCAAAG+AGG 0.642160 4_3:-56513804 Msa0649790:CDS
AAAATGGTGATAATCCAGCA+TGG 0.647627 4_3:-56513413 Msa0649790:CDS
TATGATGATGGTCCTAGTAA+TGG 0.648405 4_3:+56511833 None:intergenic
CCTCAAAATCAAATGTGATG+CGG 0.648723 4_3:-56513220 Msa0649790:CDS
CCGCTAGAAATCATCAATGG+AGG 0.650624 4_3:+56512466 None:intergenic
ACAGGTAAAGCGAATGAGGG+AGG 0.655166 4_3:-56511935 Msa0649790:intron
CCTCCATTGATGATTTCTAG+CGG 0.656669 4_3:-56512466 Msa0649790:CDS
GAGAATCGCAAATACAAACA+TGG 0.657233 4_3:-56515045 Msa0649790:CDS
ATCGCTCACAAGCATATGTG+AGG 0.657257 4_3:-56515001 Msa0649790:CDS
GGTGTTGAAAGAATGGTCAG+AGG 0.659062 4_3:-56512938 Msa0649790:CDS
GTCCAAAAGGAGAGAAACAA+GGG 0.659274 4_3:-56512708 Msa0649790:CDS
TATGTGCCAAGAAATTCACC+AGG 0.661064 4_3:-56512763 Msa0649790:CDS
ATAATAAGAGACAAAGCAGG+TGG 0.661476 4_3:-56511728 Msa0649790:CDS
GTAGGAACACACAGAAGTGG+TGG 0.662276 4_3:-56511590 Msa0649790:CDS
ATACTTCTGCTCATCAAATG+GGG 0.665706 4_3:-56511457 Msa0649790:CDS
GGATGATGATGAATCAAGCA+AGG 0.668966 4_3:-56514956 Msa0649790:CDS
AAAGAGAAAAGATTGTGCAG+AGG 0.669869 4_3:-56513639 Msa0649790:CDS
CATACATACATACCTCGTCA+GGG 0.683001 4_3:+56514890 None:intergenic
GAGTGTCATCCATTGTTGAG+GGG 0.685569 4_3:-56515075 Msa0649790:CDS
TAACAGGATGCAAAGCTGAG+AGG 0.688213 4_3:-56512636 Msa0649790:CDS
CATCCCGTGCTAATGACATG+GGG 0.693536 4_3:-56512406 Msa0649790:CDS
AGGTGGACAAGTAACAACAG+AGG 0.733762 4_3:-56511711 Msa0649790:CDS
ATGTGCCAAGAAATTCACCA+GGG 0.759136 4_3:-56512762 Msa0649790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTGTATTTTTTTTTGT+GGG - chr4_3:56511630-56511649 Msa0649790:CDS 15.0%
!! CATTGAATAATTAATGTATT+TGG - chr4_3:56511814-56511833 Msa0649790:CDS 15.0%
!! ATAATTAATCATTATTGAGT+TGG - chr4_3:56512036-56512055 Msa0649790:intron 15.0%
!! TAATTAATCATTATTGAGTT+GGG - chr4_3:56512037-56512056 Msa0649790:intron 15.0%
!! TGTCATAAAGTTTATAAATT+TGG - chr4_3:56512070-56512089 Msa0649790:intron 15.0%
!!! ATCATGTTATAAATTTTGAA+TGG - chr4_3:56512313-56512332 Msa0649790:intron 15.0%
!! AAAATCAAGTATTAAGAAAA+GGG - chr4_3:56513334-56513353 Msa0649790:CDS 15.0%
!!! TTTTTTTATAAACATGGTAT+TGG - chr4_3:56513847-56513866 Msa0649790:intron 15.0%
!!! ATAATTTTTTTTTTCTTCCT+AGG - chr4_3:56514153-56514172 Msa0649790:intron 15.0%
!!! TATAAATTTTATGTATGAGA+TGG - chr4_3:56515102-56515121 Msa0649790:exon 15.0%
!!! TTATGTGTATTTTTTTTTGT+GGG - chr4_3:56511630-56511649 Msa0649790:CDS 15.0%
!! CATTGAATAATTAATGTATT+TGG - chr4_3:56511814-56511833 Msa0649790:CDS 15.0%
!! ATAATTAATCATTATTGAGT+TGG - chr4_3:56512036-56512055 Msa0649790:intron 15.0%
!! TAATTAATCATTATTGAGTT+GGG - chr4_3:56512037-56512056 Msa0649790:intron 15.0%
!! TGTCATAAAGTTTATAAATT+TGG - chr4_3:56512070-56512089 Msa0649790:intron 15.0%
!!! ATCATGTTATAAATTTTGAA+TGG - chr4_3:56512313-56512332 Msa0649790:intron 15.0%
!! AAAATCAAGTATTAAGAAAA+GGG - chr4_3:56513334-56513353 Msa0649790:CDS 15.0%
!!! TTTTTTTATAAACATGGTAT+TGG - chr4_3:56513847-56513866 Msa0649790:intron 15.0%
!!! ATAATTTTTTTTTTCTTCCT+AGG - chr4_3:56514153-56514172 Msa0649790:intron 15.0%
!!! TATAAATTTTATGTATGAGA+TGG - chr4_3:56515102-56515121 Msa0649790:exon 15.0%
!! ACATATTGAAACATAAATGT+GGG + chr4_3:56511402-56511421 None:intergenic 20.0%
!! AACATATTGAAACATAAATG+TGG + chr4_3:56511403-56511422 None:intergenic 20.0%
!!! CTTATGTGTATTTTTTTTTG+TGG - chr4_3:56511629-56511648 Msa0649790:CDS 20.0%
!!! TATGTGTATTTTTTTTTGTG+GGG - chr4_3:56511631-56511650 Msa0649790:CDS 20.0%
!!! TAAGAAAAGATTCATTTTCT+AGG - chr4_3:56511789-56511808 Msa0649790:CDS 20.0%
!!! TAAGAAAAGATTCCTTTTTT+AGG + chr4_3:56511878-56511897 None:intergenic 20.0%
!!! TCTTTTCTTATATTTGAAAC+CGG - chr4_3:56511888-56511907 Msa0649790:CDS 20.0%
!!! AAGTGTTTTTTCTGAATATT+TGG + chr4_3:56511985-56512004 None:intergenic 20.0%
!! TTATAAACTTTATGACAACT+TGG + chr4_3:56512067-56512086 None:intergenic 20.0%
!!! ATTTTCCAACCTTATTTTTA+AGG - chr4_3:56512178-56512197 Msa0649790:intron 20.0%
!!! TATTGATTAGAGTGATTTTA+TGG - chr4_3:56512385-56512404 Msa0649790:CDS 20.0%
!!! GTTTAATTTTGATGTATTGT+TGG + chr4_3:56512659-56512678 None:intergenic 20.0%
!!! TTCTATAATTCCTTTTTCAA+GGG + chr4_3:56512824-56512843 None:intergenic 20.0%
!!! TTTCTATAATTCCTTTTTCA+AGG + chr4_3:56512825-56512844 None:intergenic 20.0%
!!! TGATTCAAGAATACTTATTT+TGG - chr4_3:56513122-56513141 Msa0649790:CDS 20.0%
!!! CTTTTCTTAATACTTGATTT+TGG + chr4_3:56513335-56513354 None:intergenic 20.0%
!! CAAAATCAAGTATTAAGAAA+AGG - chr4_3:56513333-56513352 Msa0649790:CDS 20.0%
!! TTTGAAAATAGTTACAAGAA+TGG - chr4_3:56513540-56513559 Msa0649790:intron 20.0%
!! GGTTTAAAGAATAAAAACAT+TGG - chr4_3:56513702-56513721 Msa0649790:CDS 20.0%
!! TTGATTGAATAGTAATCATA+GGG + chr4_3:56514835-56514854 None:intergenic 20.0%
!!! AATTTTATTACAGCTGTATA+AGG + chr4_3:56514965-56514984 None:intergenic 20.0%
!! AATAAAAGATCACCAAATTA+TGG - chr4_3:56515023-56515042 Msa0649790:CDS 20.0%
!! ACATATTGAAACATAAATGT+GGG + chr4_3:56511402-56511421 None:intergenic 20.0%
!! AACATATTGAAACATAAATG+TGG + chr4_3:56511403-56511422 None:intergenic 20.0%
!!! CTTATGTGTATTTTTTTTTG+TGG - chr4_3:56511629-56511648 Msa0649790:CDS 20.0%
!!! TATGTGTATTTTTTTTTGTG+GGG - chr4_3:56511631-56511650 Msa0649790:CDS 20.0%
!!! TAAGAAAAGATTCATTTTCT+AGG - chr4_3:56511789-56511808 Msa0649790:CDS 20.0%
!!! TAAGAAAAGATTCCTTTTTT+AGG + chr4_3:56511878-56511897 None:intergenic 20.0%
!!! TCTTTTCTTATATTTGAAAC+CGG - chr4_3:56511888-56511907 Msa0649790:CDS 20.0%
!!! AAGTGTTTTTTCTGAATATT+TGG + chr4_3:56511985-56512004 None:intergenic 20.0%
!! TTATAAACTTTATGACAACT+TGG + chr4_3:56512067-56512086 None:intergenic 20.0%
!!! ATTTTCCAACCTTATTTTTA+AGG - chr4_3:56512178-56512197 Msa0649790:intron 20.0%
!!! TATTGATTAGAGTGATTTTA+TGG - chr4_3:56512385-56512404 Msa0649790:CDS 20.0%
!!! GTTTAATTTTGATGTATTGT+TGG + chr4_3:56512659-56512678 None:intergenic 20.0%
!!! TTCTATAATTCCTTTTTCAA+GGG + chr4_3:56512824-56512843 None:intergenic 20.0%
!!! TTTCTATAATTCCTTTTTCA+AGG + chr4_3:56512825-56512844 None:intergenic 20.0%
!!! TGATTCAAGAATACTTATTT+TGG - chr4_3:56513122-56513141 Msa0649790:CDS 20.0%
!!! CTTTTCTTAATACTTGATTT+TGG + chr4_3:56513335-56513354 None:intergenic 20.0%
!! CAAAATCAAGTATTAAGAAA+AGG - chr4_3:56513333-56513352 Msa0649790:CDS 20.0%
!! TTTGAAAATAGTTACAAGAA+TGG - chr4_3:56513540-56513559 Msa0649790:intron 20.0%
!! GGTTTAAAGAATAAAAACAT+TGG - chr4_3:56513702-56513721 Msa0649790:CDS 20.0%
!! TTGATTGAATAGTAATCATA+GGG + chr4_3:56514835-56514854 None:intergenic 20.0%
!!! AATTTTATTACAGCTGTATA+AGG + chr4_3:56514965-56514984 None:intergenic 20.0%
!! AATAAAAGATCACCAAATTA+TGG - chr4_3:56515023-56515042 Msa0649790:CDS 20.0%
! GTATGTATGTATGTATTCAT+CGG - chr4_3:56511275-56511294 Msa0649790:CDS 25.0%
!!! CGTGTTTAACTATTTTTGTT+AGG + chr4_3:56511524-56511543 None:intergenic 25.0%
!!! TTTTAGGTGCATATTTTGTT+AGG - chr4_3:56511578-56511597 Msa0649790:CDS 25.0%
! AACAATGCATAAAATATGCA+AGG + chr4_3:56511669-56511688 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG + chr4_3:56511779-56511798 None:intergenic 25.0%
! CATTGAGTAGTTAATGTATT+TGG + chr4_3:56511853-56511872 None:intergenic 25.0%
! AAATAAGGTTGGAAAATGAT+TGG + chr4_3:56512175-56512194 None:intergenic 25.0%
! CAATACCTTAAAAATAAGGT+TGG + chr4_3:56512186-56512205 None:intergenic 25.0%
! CCAACAATACCTTAAAAATA+AGG + chr4_3:56512190-56512209 None:intergenic 25.0%
!!! CCTTATTTTTAAGGTATTGT+TGG - chr4_3:56512187-56512206 Msa0649790:intron 25.0%
!! TATAAATTTTGAATGGCAAC+AGG - chr4_3:56512320-56512339 Msa0649790:intron 25.0%
! TAAACGAATGCAATTCTAAA+AGG + chr4_3:56512558-56512577 None:intergenic 25.0%
!! GTGTAAATTCTTTTATAGCA+AGG + chr4_3:56512637-56512656 None:intergenic 25.0%
! TACCAATATACTTAAGAAAG+TGG - chr4_3:56512693-56512712 Msa0649790:CDS 25.0%
!!! ATTTTGTAGGTTGATGAAAA+TGG - chr4_3:56512718-56512737 Msa0649790:CDS 25.0%
!!! TCTATAATTCCTTTTTCAAG+GGG + chr4_3:56512823-56512842 None:intergenic 25.0%
! TTCTAGTGATGAATAATCTT+CGG + chr4_3:56513052-56513071 None:intergenic 25.0%
! AATGAAAATTGTACACAAGA+AGG - chr4_3:56513306-56513325 Msa0649790:CDS 25.0%
! AACAGAAAGAAGAAATGTTT+GGG - chr4_3:56513567-56513586 Msa0649790:CDS 25.0%
! TTCAATTATTGCTCTTGTAT+CGG + chr4_3:56514291-56514310 None:intergenic 25.0%
! ATAATTGAAACACCATTACT+AGG - chr4_3:56514302-56514321 Msa0649790:intron 25.0%
! TATAGATAGTGTTTATCCAA+TGG - chr4_3:56514631-56514650 Msa0649790:intron 25.0%
! GTTGATTGAATAGTAATCAT+AGG + chr4_3:56514836-56514855 None:intergenic 25.0%
!! CTGCATTTTGTATTTCAAAT+AGG - chr4_3:56514855-56514874 Msa0649790:intron 25.0%
!! AATAGGATTGTAGATTTTCT+TGG - chr4_3:56514872-56514891 Msa0649790:intron 25.0%
!! ATTGTAGATTTTCTTGGAAA+GGG - chr4_3:56514878-56514897 Msa0649790:intron 25.0%
! CACGAAAATTAACAATCTTA+TGG + chr4_3:56514911-56514930 None:intergenic 25.0%
!! CATAAGATTGTTAATTTTCG+TGG - chr4_3:56514909-56514928 Msa0649790:CDS 25.0%
! GTATGTATGTATGTATTCAT+CGG - chr4_3:56511275-56511294 Msa0649790:CDS 25.0%
!!! CGTGTTTAACTATTTTTGTT+AGG + chr4_3:56511524-56511543 None:intergenic 25.0%
!!! TTTTAGGTGCATATTTTGTT+AGG - chr4_3:56511578-56511597 Msa0649790:CDS 25.0%
! AACAATGCATAAAATATGCA+AGG + chr4_3:56511669-56511688 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG + chr4_3:56511779-56511798 None:intergenic 25.0%
! CATTGAGTAGTTAATGTATT+TGG + chr4_3:56511853-56511872 None:intergenic 25.0%
! AAATAAGGTTGGAAAATGAT+TGG + chr4_3:56512175-56512194 None:intergenic 25.0%
! CAATACCTTAAAAATAAGGT+TGG + chr4_3:56512186-56512205 None:intergenic 25.0%
! CCAACAATACCTTAAAAATA+AGG + chr4_3:56512190-56512209 None:intergenic 25.0%
!!! CCTTATTTTTAAGGTATTGT+TGG - chr4_3:56512187-56512206 Msa0649790:intron 25.0%
!! TATAAATTTTGAATGGCAAC+AGG - chr4_3:56512320-56512339 Msa0649790:intron 25.0%
! TAAACGAATGCAATTCTAAA+AGG + chr4_3:56512558-56512577 None:intergenic 25.0%
!! GTGTAAATTCTTTTATAGCA+AGG + chr4_3:56512637-56512656 None:intergenic 25.0%
! TACCAATATACTTAAGAAAG+TGG - chr4_3:56512693-56512712 Msa0649790:CDS 25.0%
!!! ATTTTGTAGGTTGATGAAAA+TGG - chr4_3:56512718-56512737 Msa0649790:CDS 25.0%
!!! TCTATAATTCCTTTTTCAAG+GGG + chr4_3:56512823-56512842 None:intergenic 25.0%
! TTCTAGTGATGAATAATCTT+CGG + chr4_3:56513052-56513071 None:intergenic 25.0%
! AATGAAAATTGTACACAAGA+AGG - chr4_3:56513306-56513325 Msa0649790:CDS 25.0%
! AACAGAAAGAAGAAATGTTT+GGG - chr4_3:56513567-56513586 Msa0649790:CDS 25.0%
! TTCAATTATTGCTCTTGTAT+CGG + chr4_3:56514291-56514310 None:intergenic 25.0%
! ATAATTGAAACACCATTACT+AGG - chr4_3:56514302-56514321 Msa0649790:intron 25.0%
! TATAGATAGTGTTTATCCAA+TGG - chr4_3:56514631-56514650 Msa0649790:intron 25.0%
! GTTGATTGAATAGTAATCAT+AGG + chr4_3:56514836-56514855 None:intergenic 25.0%
!! CTGCATTTTGTATTTCAAAT+AGG - chr4_3:56514855-56514874 Msa0649790:intron 25.0%
!! AATAGGATTGTAGATTTTCT+TGG - chr4_3:56514872-56514891 Msa0649790:intron 25.0%
!! ATTGTAGATTTTCTTGGAAA+GGG - chr4_3:56514878-56514897 Msa0649790:intron 25.0%
! CACGAAAATTAACAATCTTA+TGG + chr4_3:56514911-56514930 None:intergenic 25.0%
!! CATAAGATTGTTAATTTTCG+TGG - chr4_3:56514909-56514928 Msa0649790:CDS 25.0%
! ATACAAACATGGATTTTCTG+TGG - chr4_3:56511113-56511132 Msa0649790:three_prime_UTR 30.0%
!! GCTATATTTGTTTTCACTCA+AGG - chr4_3:56511444-56511463 Msa0649790:CDS 30.0%
AACTAAAATTATACTCCCTC+CGG - chr4_3:56511757-56511776 Msa0649790:CDS 30.0%
CTACTCAATGAACCTAAAAA+AGG - chr4_3:56511863-56511882 Msa0649790:CDS 30.0%
! TTTCTTATATTTGAAACCGG+AGG - chr4_3:56511891-56511910 Msa0649790:CDS 30.0%
! TTCTTATATTTGAAACCGGA+GGG - chr4_3:56511892-56511911 Msa0649790:CDS 30.0%
GTCCACTTTCTTAAGTATAT+TGG + chr4_3:56512698-56512717 None:intergenic 30.0%
! TAAGAAAGTGGACATTTTGT+AGG - chr4_3:56512705-56512724 Msa0649790:CDS 30.0%
TGTTGATACTTCATATCCAA+TGG + chr4_3:56512764-56512783 None:intergenic 30.0%
CAACAATCTCTATCTAACAA+AGG - chr4_3:56512871-56512890 Msa0649790:CDS 30.0%
TCTAGTGATGAATAATCTTC+GGG + chr4_3:56513051-56513070 None:intergenic 30.0%
GAAGATTATTCATCACTAGA+AGG - chr4_3:56513051-56513070 Msa0649790:CDS 30.0%
ATGGACCAACAATATGAAAA+TGG - chr4_3:56513081-56513100 Msa0649790:CDS 30.0%
ACCAACAATATGAAAATGGA+GGG - chr4_3:56513085-56513104 Msa0649790:CDS 30.0%
TTCTTGAATCAATAGAAGCT+AGG + chr4_3:56513113-56513132 None:intergenic 30.0%
!!! TCAAGAATACTTATTTTGGC+AGG - chr4_3:56513126-56513145 Msa0649790:CDS 30.0%
TTGCATTAAAACACCAGAAA+AGG - chr4_3:56513188-56513207 Msa0649790:CDS 30.0%
AATCATTATTGTGGTTCATG+TGG - chr4_3:56513408-56513427 Msa0649790:CDS 30.0%
CAACAGAAAGAAGAAATGTT+TGG - chr4_3:56513566-56513585 Msa0649790:CDS 30.0%
!!! TTGAGATCTGATTTTGATTC+TGG + chr4_3:56513774-56513793 None:intergenic 30.0%
GAATCAAAATCAGATCTCAA+AGG - chr4_3:56513774-56513793 Msa0649790:CDS 30.0%
!! GAATCATCATTTGATGATGA+TGG + chr4_3:56514263-56514282 None:intergenic 30.0%
! TATAGTGCTGAATATGATGA+TGG + chr4_3:56514329-56514348 None:intergenic 30.0%
ATATTCAGCACTATATCCAT+GGG - chr4_3:56514334-56514353 Msa0649790:intron 30.0%
ACAATAATAAGAGACAAAGC+AGG - chr4_3:56514416-56514435 Msa0649790:intron 30.0%
CGATTGAATTCAATTTGTAG+CGG + chr4_3:56514469-56514488 None:intergenic 30.0%
TATACTTCTGCTCATCAAAT+GGG - chr4_3:56514689-56514708 Msa0649790:intron 30.0%
! GATTGTAGATTTTCTTGGAA+AGG - chr4_3:56514877-56514896 Msa0649790:intron 30.0%
GAGTTCACATTACCATAATT+TGG + chr4_3:56515038-56515057 None:intergenic 30.0%
! ATACAAACATGGATTTTCTG+TGG - chr4_3:56511113-56511132 Msa0649790:three_prime_UTR 30.0%
!! GCTATATTTGTTTTCACTCA+AGG - chr4_3:56511444-56511463 Msa0649790:CDS 30.0%
AACTAAAATTATACTCCCTC+CGG - chr4_3:56511757-56511776 Msa0649790:CDS 30.0%
CTACTCAATGAACCTAAAAA+AGG - chr4_3:56511863-56511882 Msa0649790:CDS 30.0%
! TTTCTTATATTTGAAACCGG+AGG - chr4_3:56511891-56511910 Msa0649790:CDS 30.0%
! TTCTTATATTTGAAACCGGA+GGG - chr4_3:56511892-56511911 Msa0649790:CDS 30.0%
GTCCACTTTCTTAAGTATAT+TGG + chr4_3:56512698-56512717 None:intergenic 30.0%
! TAAGAAAGTGGACATTTTGT+AGG - chr4_3:56512705-56512724 Msa0649790:CDS 30.0%
TGTTGATACTTCATATCCAA+TGG + chr4_3:56512764-56512783 None:intergenic 30.0%
CAACAATCTCTATCTAACAA+AGG - chr4_3:56512871-56512890 Msa0649790:CDS 30.0%
TCTAGTGATGAATAATCTTC+GGG + chr4_3:56513051-56513070 None:intergenic 30.0%
GAAGATTATTCATCACTAGA+AGG - chr4_3:56513051-56513070 Msa0649790:CDS 30.0%
ATGGACCAACAATATGAAAA+TGG - chr4_3:56513081-56513100 Msa0649790:CDS 30.0%
ACCAACAATATGAAAATGGA+GGG - chr4_3:56513085-56513104 Msa0649790:CDS 30.0%
TTCTTGAATCAATAGAAGCT+AGG + chr4_3:56513113-56513132 None:intergenic 30.0%
!!! TCAAGAATACTTATTTTGGC+AGG - chr4_3:56513126-56513145 Msa0649790:CDS 30.0%
TTGCATTAAAACACCAGAAA+AGG - chr4_3:56513188-56513207 Msa0649790:CDS 30.0%
AATCATTATTGTGGTTCATG+TGG - chr4_3:56513408-56513427 Msa0649790:CDS 30.0%
CAACAGAAAGAAGAAATGTT+TGG - chr4_3:56513566-56513585 Msa0649790:CDS 30.0%
!!! TTGAGATCTGATTTTGATTC+TGG + chr4_3:56513774-56513793 None:intergenic 30.0%
GAATCAAAATCAGATCTCAA+AGG - chr4_3:56513774-56513793 Msa0649790:CDS 30.0%
!! GAATCATCATTTGATGATGA+TGG + chr4_3:56514263-56514282 None:intergenic 30.0%
! TATAGTGCTGAATATGATGA+TGG + chr4_3:56514329-56514348 None:intergenic 30.0%
ATATTCAGCACTATATCCAT+GGG - chr4_3:56514334-56514353 Msa0649790:intron 30.0%
ACAATAATAAGAGACAAAGC+AGG - chr4_3:56514416-56514435 Msa0649790:intron 30.0%
CGATTGAATTCAATTTGTAG+CGG + chr4_3:56514469-56514488 None:intergenic 30.0%
TATACTTCTGCTCATCAAAT+GGG - chr4_3:56514689-56514708 Msa0649790:intron 30.0%
! GATTGTAGATTTTCTTGGAA+AGG - chr4_3:56514877-56514896 Msa0649790:intron 30.0%
GAGTTCACATTACCATAATT+TGG + chr4_3:56515038-56515057 None:intergenic 30.0%
ATCTTTCTTTCCTTCTGTGT+GGG + chr4_3:56511045-56511064 None:intergenic 35.0%
AGAAGGAAAGAAAGATGAGA+AGG - chr4_3:56511049-56511068 Msa0649790:three_prime_UTR 35.0%
GAAGGAAAGAAAGATGAGAA+GGG - chr4_3:56511050-56511069 Msa0649790:three_prime_UTR 35.0%
GAGAATCGCAAATACAAACA+TGG - chr4_3:56511102-56511121 Msa0649790:three_prime_UTR 35.0%
CTTGATTCATCATCATCCAT+TGG + chr4_3:56511189-56511208 None:intergenic 35.0%
TTCCATTCAGGAACTTCTTT+CGG + chr4_3:56511347-56511366 None:intergenic 35.0%
! GCGAGCTAATCTATAGTTTT+AGG - chr4_3:56511562-56511581 Msa0649790:CDS 35.0%
GCATAAAATATGCAAGGTCT+GGG + chr4_3:56511663-56511682 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG + chr4_3:56511664-56511683 None:intergenic 35.0%
! TGTGTATTTCTAAGCTCATG+AGG - chr4_3:56511691-56511710 Msa0649790:CDS 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr4_3:56511775-56511794 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr4_3:56511776-56511795 None:intergenic 35.0%
ACAAAAAAAGATACTCCCTC+CGG + chr4_3:56511910-56511929 None:intergenic 35.0%
! AGTTCAGCTAAAAGGTTTTC+TGG + chr4_3:56512220-56512239 None:intergenic 35.0%
! GTTGTTCAAGTTCAGCTAAA+AGG + chr4_3:56512228-56512247 None:intergenic 35.0%
CTTGAGAAGTTGCTGATAAA+GGG + chr4_3:56512474-56512493 None:intergenic 35.0%
AAAGAGAAAAGATTGTGCAG+AGG - chr4_3:56512508-56512527 Msa0649790:CDS 35.0%
AAGAGAAAAGATTGTGCAGA+GGG - chr4_3:56512509-56512528 Msa0649790:CDS 35.0%
! AGAAGAAAACAAAGAGGCAT+AGG + chr4_3:56512590-56512609 None:intergenic 35.0%
!!! CCTCTTTGTTTTCTTCTCTT+GGG - chr4_3:56512593-56512612 Msa0649790:CDS 35.0%
AAAATGGTGATAATCCAGCA+TGG - chr4_3:56512734-56512753 Msa0649790:CDS 35.0%
!!! TTTTTCAAGGGGTCTCTTTT+TGG + chr4_3:56512812-56512831 None:intergenic 35.0%
AAAAAGAGACCCCTTGAAAA+AGG - chr4_3:56512811-56512830 Msa0649790:CDS 35.0%
!!! GATTTTGAGGATGTTGCTTT+TGG + chr4_3:56512917-56512936 None:intergenic 35.0%
CCTCAAAATCAAATGTGATG+CGG - chr4_3:56512927-56512946 Msa0649790:CDS 35.0%
AAATGTGATGCGGTAATTGT+TGG - chr4_3:56512937-56512956 Msa0649790:CDS 35.0%
!! AAAGTGGTTGTTCTAGAGAA+AGG - chr4_3:56513012-56513031 Msa0649790:CDS 35.0%
TCATATTGTTGGTCCATTGA+AGG + chr4_3:56513078-56513097 None:intergenic 35.0%
GACCAACAATATGAAAATGG+AGG - chr4_3:56513084-56513103 Msa0649790:CDS 35.0%
! TCCCTCCATTTTCATATTGT+TGG + chr4_3:56513089-56513108 None:intergenic 35.0%
! CATTCTTTCAACACCTTTTC+TGG + chr4_3:56513204-56513223 None:intergenic 35.0%
!! CAGAAAAGGTGTTGAAAGAA+TGG - chr4_3:56513202-56513221 Msa0649790:CDS 35.0%
! CATAGAGTATCTATCTGCTA+TGG - chr4_3:56513257-56513276 Msa0649790:CDS 35.0%
!! AGAAAAGGGTGTCAAAATCT+TGG - chr4_3:56513348-56513367 Msa0649790:CDS 35.0%
TATTGTGGTTCATGTGGTTA+TGG - chr4_3:56513414-56513433 Msa0649790:CDS 35.0%
CTTGTAGATGCTGTTGAAAA+AGG - chr4_3:56513477-56513496 Msa0649790:intron 35.0%
!! AAAGGTGCTGTGATAATAAC+AGG - chr4_3:56513495-56513514 Msa0649790:intron 35.0%
! GAAGAAATGTTTGGGAGTTT+TGG - chr4_3:56513575-56513594 Msa0649790:CDS 35.0%
GCAAAAGTAACAATTTCAGC+AGG - chr4_3:56513642-56513661 Msa0649790:CDS 35.0%
AAAGTAACAATTTCAGCAGG+TGG - chr4_3:56513645-56513664 Msa0649790:CDS 35.0%
AAACCGCTAGAAATCATCAA+TGG + chr4_3:56513687-56513706 None:intergenic 35.0%
AATCCAGTAAACAATGTCTC+AGG + chr4_3:56513929-56513948 None:intergenic 35.0%
CATGTATCGCTAAATCATGT+AGG - chr4_3:56514067-56514086 Msa0649790:intron 35.0%
!! TTGATGATGATGGTACTCTA+TGG + chr4_3:56514253-56514272 None:intergenic 35.0%
!! TATGATGATGGTCCTAGTAA+TGG + chr4_3:56514317-56514336 None:intergenic 35.0%
CATATTCAGCACTATATCCA+TGG - chr4_3:56514333-56514352 Msa0649790:intron 35.0%
ATAATAAGAGACAAAGCAGG+TGG - chr4_3:56514419-56514438 Msa0649790:intron 35.0%
TAATGAGAACACTAGCGAAA+AGG - chr4_3:56514595-56514614 Msa0649790:intron 35.0%
GATAGTGTTTATCCAATGGA+AGG - chr4_3:56514635-56514654 Msa0649790:intron 35.0%
TACAAATTCCAATTCTCACC+TGG + chr4_3:56514671-56514690 None:intergenic 35.0%
GTATACTTCTGCTCATCAAA+TGG - chr4_3:56514688-56514707 Msa0649790:intron 35.0%
ATACTTCTGCTCATCAAATG+GGG - chr4_3:56514690-56514709 Msa0649790:intron 35.0%
TAGAATGGGAGTGAATGAAA+AGG - chr4_3:56514718-56514737 Msa0649790:intron 35.0%
TTGATGAAAATGGTGAGAGT+TGG - chr4_3:56514750-56514769 Msa0649790:intron 35.0%
TGATGAAAATGGTGAGAGTT+GGG - chr4_3:56514751-56514770 Msa0649790:intron 35.0%
ATCTTTCTTTCCTTCTGTGT+GGG + chr4_3:56511045-56511064 None:intergenic 35.0%
AGAAGGAAAGAAAGATGAGA+AGG - chr4_3:56511049-56511068 Msa0649790:three_prime_UTR 35.0%
GAAGGAAAGAAAGATGAGAA+GGG - chr4_3:56511050-56511069 Msa0649790:three_prime_UTR 35.0%
GAGAATCGCAAATACAAACA+TGG - chr4_3:56511102-56511121 Msa0649790:three_prime_UTR 35.0%
CTTGATTCATCATCATCCAT+TGG + chr4_3:56511189-56511208 None:intergenic 35.0%
TTCCATTCAGGAACTTCTTT+CGG + chr4_3:56511347-56511366 None:intergenic 35.0%
! GCGAGCTAATCTATAGTTTT+AGG - chr4_3:56511562-56511581 Msa0649790:CDS 35.0%
GCATAAAATATGCAAGGTCT+GGG + chr4_3:56511663-56511682 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+TGG + chr4_3:56511664-56511683 None:intergenic 35.0%
! TGTGTATTTCTAAGCTCATG+AGG - chr4_3:56511691-56511710 Msa0649790:CDS 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr4_3:56511775-56511794 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr4_3:56511776-56511795 None:intergenic 35.0%
ACAAAAAAAGATACTCCCTC+CGG + chr4_3:56511910-56511929 None:intergenic 35.0%
! AGTTCAGCTAAAAGGTTTTC+TGG + chr4_3:56512220-56512239 None:intergenic 35.0%
! GTTGTTCAAGTTCAGCTAAA+AGG + chr4_3:56512228-56512247 None:intergenic 35.0%
CTTGAGAAGTTGCTGATAAA+GGG + chr4_3:56512474-56512493 None:intergenic 35.0%
AAAGAGAAAAGATTGTGCAG+AGG - chr4_3:56512508-56512527 Msa0649790:CDS 35.0%
AAGAGAAAAGATTGTGCAGA+GGG - chr4_3:56512509-56512528 Msa0649790:CDS 35.0%
! AGAAGAAAACAAAGAGGCAT+AGG + chr4_3:56512590-56512609 None:intergenic 35.0%
!!! CCTCTTTGTTTTCTTCTCTT+GGG - chr4_3:56512593-56512612 Msa0649790:CDS 35.0%
AAAATGGTGATAATCCAGCA+TGG - chr4_3:56512734-56512753 Msa0649790:CDS 35.0%
!!! TTTTTCAAGGGGTCTCTTTT+TGG + chr4_3:56512812-56512831 None:intergenic 35.0%
AAAAAGAGACCCCTTGAAAA+AGG - chr4_3:56512811-56512830 Msa0649790:CDS 35.0%
!!! GATTTTGAGGATGTTGCTTT+TGG + chr4_3:56512917-56512936 None:intergenic 35.0%
CCTCAAAATCAAATGTGATG+CGG - chr4_3:56512927-56512946 Msa0649790:CDS 35.0%
AAATGTGATGCGGTAATTGT+TGG - chr4_3:56512937-56512956 Msa0649790:CDS 35.0%
!! AAAGTGGTTGTTCTAGAGAA+AGG - chr4_3:56513012-56513031 Msa0649790:CDS 35.0%
TCATATTGTTGGTCCATTGA+AGG + chr4_3:56513078-56513097 None:intergenic 35.0%
GACCAACAATATGAAAATGG+AGG - chr4_3:56513084-56513103 Msa0649790:CDS 35.0%
! TCCCTCCATTTTCATATTGT+TGG + chr4_3:56513089-56513108 None:intergenic 35.0%
! CATTCTTTCAACACCTTTTC+TGG + chr4_3:56513204-56513223 None:intergenic 35.0%
!! CAGAAAAGGTGTTGAAAGAA+TGG - chr4_3:56513202-56513221 Msa0649790:CDS 35.0%
! CATAGAGTATCTATCTGCTA+TGG - chr4_3:56513257-56513276 Msa0649790:CDS 35.0%
!! AGAAAAGGGTGTCAAAATCT+TGG - chr4_3:56513348-56513367 Msa0649790:CDS 35.0%
TATTGTGGTTCATGTGGTTA+TGG - chr4_3:56513414-56513433 Msa0649790:CDS 35.0%
CTTGTAGATGCTGTTGAAAA+AGG - chr4_3:56513477-56513496 Msa0649790:intron 35.0%
!! AAAGGTGCTGTGATAATAAC+AGG - chr4_3:56513495-56513514 Msa0649790:intron 35.0%
! GAAGAAATGTTTGGGAGTTT+TGG - chr4_3:56513575-56513594 Msa0649790:CDS 35.0%
GCAAAAGTAACAATTTCAGC+AGG - chr4_3:56513642-56513661 Msa0649790:CDS 35.0%
AAAGTAACAATTTCAGCAGG+TGG - chr4_3:56513645-56513664 Msa0649790:CDS 35.0%
AAACCGCTAGAAATCATCAA+TGG + chr4_3:56513687-56513706 None:intergenic 35.0%
AATCCAGTAAACAATGTCTC+AGG + chr4_3:56513929-56513948 None:intergenic 35.0%
CATGTATCGCTAAATCATGT+AGG - chr4_3:56514067-56514086 Msa0649790:intron 35.0%
!! TTGATGATGATGGTACTCTA+TGG + chr4_3:56514253-56514272 None:intergenic 35.0%
!! TATGATGATGGTCCTAGTAA+TGG + chr4_3:56514317-56514336 None:intergenic 35.0%
CATATTCAGCACTATATCCA+TGG - chr4_3:56514333-56514352 Msa0649790:intron 35.0%
ATAATAAGAGACAAAGCAGG+TGG - chr4_3:56514419-56514438 Msa0649790:intron 35.0%
TAATGAGAACACTAGCGAAA+AGG - chr4_3:56514595-56514614 Msa0649790:intron 35.0%
GATAGTGTTTATCCAATGGA+AGG - chr4_3:56514635-56514654 Msa0649790:intron 35.0%
TACAAATTCCAATTCTCACC+TGG + chr4_3:56514671-56514690 None:intergenic 35.0%
GTATACTTCTGCTCATCAAA+TGG - chr4_3:56514688-56514707 Msa0649790:intron 35.0%
ATACTTCTGCTCATCAAATG+GGG - chr4_3:56514690-56514709 Msa0649790:intron 35.0%
TAGAATGGGAGTGAATGAAA+AGG - chr4_3:56514718-56514737 Msa0649790:intron 35.0%
TTGATGAAAATGGTGAGAGT+TGG - chr4_3:56514750-56514769 Msa0649790:intron 35.0%
TGATGAAAATGGTGAGAGTT+GGG - chr4_3:56514751-56514770 Msa0649790:intron 35.0%
TCTTTCTTTCCTTCTGTGTG+GGG + chr4_3:56511044-56511063 None:intergenic 40.0%
CATCTTTCTTTCCTTCTGTG+TGG + chr4_3:56511046-56511065 None:intergenic 40.0%
TATGTTTCCTTCACTGCCAA+TGG - chr4_3:56511170-56511189 Msa0649790:three_prime_UTR 40.0%
! GGATGATGATGAATCAAGCA+AGG - chr4_3:56511191-56511210 Msa0649790:three_prime_UTR 40.0%
CATACATACATACCTCGTCA+GGG + chr4_3:56511260-56511279 None:intergenic 40.0%
ACATACATACATACCTCGTC+AGG + chr4_3:56511261-56511280 None:intergenic 40.0%
ATCCGAAAGAAGTTCCTGAA+TGG - chr4_3:56511342-56511361 Msa0649790:CDS 40.0%
AAGTTCCTGAATGGAATGCA+AGG - chr4_3:56511351-56511370 Msa0649790:CDS 40.0%
!!! TGTTTTCACTCAAGGTACTG+AGG - chr4_3:56511452-56511471 Msa0649790:CDS 40.0%
TTGCTGAGATGTTAGCAAAG+AGG - chr4_3:56512343-56512362 Msa0649790:intron 40.0%
TGCTGAGATGTTAGCAAAGA+GGG - chr4_3:56512344-56512363 Msa0649790:intron 40.0%
! TTTTATGGCTTCTAGCAACG+AGG - chr4_3:56512400-56512419 Msa0649790:CDS 40.0%
! TTGGGCACTTTCTTGATTTG+TGG - chr4_3:56512423-56512442 Msa0649790:CDS 40.0%
TGCTATGCCTCAGTAAGAAA+TGG - chr4_3:56512448-56512467 Msa0649790:CDS 40.0%
TAAAGGGCCATTTCTTACTG+AGG + chr4_3:56512458-56512477 None:intergenic 40.0%
GCTTGAGAAGTTGCTGATAA+AGG + chr4_3:56512475-56512494 None:intergenic 40.0%
CAACTTCTCAAGCTTGTCTT+TGG - chr4_3:56512482-56512501 Msa0649790:CDS 40.0%
!!! GCCTCTTTGTTTTCTTCTCT+TGG - chr4_3:56512592-56512611 Msa0649790:CDS 40.0%
CCCAAGAGAAGAAAACAAAG+AGG + chr4_3:56512596-56512615 None:intergenic 40.0%
!! CCGCATCACATTTGATTTTG+AGG + chr4_3:56512930-56512949 None:intergenic 40.0%
! CTTTGTAGCCAGCTTTTGAT+AGG + chr4_3:56512996-56513015 None:intergenic 40.0%
ATCAAAAGCTGGCTACAAAG+TGG - chr4_3:56512996-56513015 Msa0649790:CDS 40.0%
ATCACTAGAAGGTCCTTCAA+TGG - chr4_3:56513062-56513081 Msa0649790:CDS 40.0%
!! ATTTTGGCAGGTTCAACAGT+AGG - chr4_3:56513138-56513157 Msa0649790:CDS 40.0%
CTATGGAAACTGTTTGTGAG+AGG - chr4_3:56513274-56513293 Msa0649790:CDS 40.0%
GAAACTGTTTGTGAGAGGAT+TGG - chr4_3:56513279-56513298 Msa0649790:CDS 40.0%
TATGTGCCAAGAAATTCACC+AGG - chr4_3:56513384-56513403 Msa0649790:CDS 40.0%
ATGTGCCAAGAAATTCACCA+GGG - chr4_3:56513385-56513404 Msa0649790:CDS 40.0%
TGATTCCCTGGTGAATTTCT+TGG + chr4_3:56513393-56513412 None:intergenic 40.0%
TCACCAGGGAATCATTATTG+TGG - chr4_3:56513399-56513418 Msa0649790:CDS 40.0%
GAACCACAATAATGATTCCC+TGG + chr4_3:56513405-56513424 None:intergenic 40.0%
TGTGGTTATGGTTGTCCAAA+AGG - chr4_3:56513426-56513445 Msa0649790:intron 40.0%
TGTCCAAAAGGAGAGAAACA+AGG - chr4_3:56513438-56513457 Msa0649790:intron 40.0%
GTCCAAAAGGAGAGAAACAA+GGG - chr4_3:56513439-56513458 Msa0649790:intron 40.0%
AACAAGGGACTCAAGTTACA+TGG - chr4_3:56513454-56513473 Msa0649790:intron 40.0%
TTGGCGAAGACTTTAAGTAG+TGG - chr4_3:56513594-56513613 Msa0649790:CDS 40.0%
! CCTCCATTGATGATTTCTAG+CGG - chr4_3:56513681-56513700 Msa0649790:CDS 40.0%
CTTTCCCGATAATTAGTGTC+TGG - chr4_3:56513887-56513906 Msa0649790:intron 40.0%
GAGACCAGACACTAATTATC+GGG + chr4_3:56513894-56513913 None:intergenic 40.0%
GGAGACCAGACACTAATTAT+CGG + chr4_3:56513895-56513914 None:intergenic 40.0%
TAAACAATGTCTCAGGTTCG+AGG + chr4_3:56513922-56513941 None:intergenic 40.0%
GAACCTGAGACATTGTTTAC+TGG - chr4_3:56513923-56513942 Msa0649790:intron 40.0%
TAGATGAAGATTCAGCTCCT+AGG + chr4_3:56514173-56514192 None:intergenic 40.0%
CTTTACCTGTTAGGAATCAC+AGG + chr4_3:56514202-56514221 None:intergenic 40.0%
CTAACAGGTAAAGCGAATGA+GGG - chr4_3:56514209-56514228 Msa0649790:intron 40.0%
! GTTATGAAGTGTGCTGTTCT+TGG + chr4_3:56514398-56514417 None:intergenic 40.0%
GACAAAGAGAATATGAGAGC+TGG - chr4_3:56514488-56514507 Msa0649790:intron 40.0%
CTGAGAATTCTAATAGCAGC+TGG - chr4_3:56514524-56514543 Msa0649790:intron 40.0%
CATTGTTACCAGGTGAGAAT+TGG - chr4_3:56514660-56514679 Msa0649790:intron 40.0%
TCAAATGGGGAGTTGTAGAA+TGG - chr4_3:56514703-56514722 Msa0649790:intron 40.0%
CAAATGGGGAGTTGTAGAAT+GGG - chr4_3:56514704-56514723 Msa0649790:intron 40.0%
ATGGGAGTGAATGAAAAGGA+AGG - chr4_3:56514722-56514741 Msa0649790:intron 40.0%
!! GAAGGTGCTGTTGATGAAAA+TGG - chr4_3:56514740-56514759 Msa0649790:intron 40.0%
TCTTTCTTTCCTTCTGTGTG+GGG + chr4_3:56511044-56511063 None:intergenic 40.0%
CATCTTTCTTTCCTTCTGTG+TGG + chr4_3:56511046-56511065 None:intergenic 40.0%
TATGTTTCCTTCACTGCCAA+TGG - chr4_3:56511170-56511189 Msa0649790:three_prime_UTR 40.0%
! GGATGATGATGAATCAAGCA+AGG - chr4_3:56511191-56511210 Msa0649790:three_prime_UTR 40.0%
CATACATACATACCTCGTCA+GGG + chr4_3:56511260-56511279 None:intergenic 40.0%
ACATACATACATACCTCGTC+AGG + chr4_3:56511261-56511280 None:intergenic 40.0%
ATCCGAAAGAAGTTCCTGAA+TGG - chr4_3:56511342-56511361 Msa0649790:CDS 40.0%
AAGTTCCTGAATGGAATGCA+AGG - chr4_3:56511351-56511370 Msa0649790:CDS 40.0%
!!! TGTTTTCACTCAAGGTACTG+AGG - chr4_3:56511452-56511471 Msa0649790:CDS 40.0%
TTGCTGAGATGTTAGCAAAG+AGG - chr4_3:56512343-56512362 Msa0649790:intron 40.0%
TGCTGAGATGTTAGCAAAGA+GGG - chr4_3:56512344-56512363 Msa0649790:intron 40.0%
! TTTTATGGCTTCTAGCAACG+AGG - chr4_3:56512400-56512419 Msa0649790:CDS 40.0%
! TTGGGCACTTTCTTGATTTG+TGG - chr4_3:56512423-56512442 Msa0649790:CDS 40.0%
TGCTATGCCTCAGTAAGAAA+TGG - chr4_3:56512448-56512467 Msa0649790:CDS 40.0%
TAAAGGGCCATTTCTTACTG+AGG + chr4_3:56512458-56512477 None:intergenic 40.0%
GCTTGAGAAGTTGCTGATAA+AGG + chr4_3:56512475-56512494 None:intergenic 40.0%
CAACTTCTCAAGCTTGTCTT+TGG - chr4_3:56512482-56512501 Msa0649790:CDS 40.0%
!!! GCCTCTTTGTTTTCTTCTCT+TGG - chr4_3:56512592-56512611 Msa0649790:CDS 40.0%
CCCAAGAGAAGAAAACAAAG+AGG + chr4_3:56512596-56512615 None:intergenic 40.0%
!! CCGCATCACATTTGATTTTG+AGG + chr4_3:56512930-56512949 None:intergenic 40.0%
! CTTTGTAGCCAGCTTTTGAT+AGG + chr4_3:56512996-56513015 None:intergenic 40.0%
ATCAAAAGCTGGCTACAAAG+TGG - chr4_3:56512996-56513015 Msa0649790:CDS 40.0%
ATCACTAGAAGGTCCTTCAA+TGG - chr4_3:56513062-56513081 Msa0649790:CDS 40.0%
!! ATTTTGGCAGGTTCAACAGT+AGG - chr4_3:56513138-56513157 Msa0649790:CDS 40.0%
CTATGGAAACTGTTTGTGAG+AGG - chr4_3:56513274-56513293 Msa0649790:CDS 40.0%
GAAACTGTTTGTGAGAGGAT+TGG - chr4_3:56513279-56513298 Msa0649790:CDS 40.0%
TATGTGCCAAGAAATTCACC+AGG - chr4_3:56513384-56513403 Msa0649790:CDS 40.0%
ATGTGCCAAGAAATTCACCA+GGG - chr4_3:56513385-56513404 Msa0649790:CDS 40.0%
TGATTCCCTGGTGAATTTCT+TGG + chr4_3:56513393-56513412 None:intergenic 40.0%
TCACCAGGGAATCATTATTG+TGG - chr4_3:56513399-56513418 Msa0649790:CDS 40.0%
GAACCACAATAATGATTCCC+TGG + chr4_3:56513405-56513424 None:intergenic 40.0%
TGTGGTTATGGTTGTCCAAA+AGG - chr4_3:56513426-56513445 Msa0649790:intron 40.0%
TGTCCAAAAGGAGAGAAACA+AGG - chr4_3:56513438-56513457 Msa0649790:intron 40.0%
GTCCAAAAGGAGAGAAACAA+GGG - chr4_3:56513439-56513458 Msa0649790:intron 40.0%
AACAAGGGACTCAAGTTACA+TGG - chr4_3:56513454-56513473 Msa0649790:intron 40.0%
TTGGCGAAGACTTTAAGTAG+TGG - chr4_3:56513594-56513613 Msa0649790:CDS 40.0%
! CCTCCATTGATGATTTCTAG+CGG - chr4_3:56513681-56513700 Msa0649790:CDS 40.0%
CTTTCCCGATAATTAGTGTC+TGG - chr4_3:56513887-56513906 Msa0649790:intron 40.0%
GAGACCAGACACTAATTATC+GGG + chr4_3:56513894-56513913 None:intergenic 40.0%
GGAGACCAGACACTAATTAT+CGG + chr4_3:56513895-56513914 None:intergenic 40.0%
TAAACAATGTCTCAGGTTCG+AGG + chr4_3:56513922-56513941 None:intergenic 40.0%
GAACCTGAGACATTGTTTAC+TGG - chr4_3:56513923-56513942 Msa0649790:intron 40.0%
TAGATGAAGATTCAGCTCCT+AGG + chr4_3:56514173-56514192 None:intergenic 40.0%
CTTTACCTGTTAGGAATCAC+AGG + chr4_3:56514202-56514221 None:intergenic 40.0%
CTAACAGGTAAAGCGAATGA+GGG - chr4_3:56514209-56514228 Msa0649790:intron 40.0%
! GTTATGAAGTGTGCTGTTCT+TGG + chr4_3:56514398-56514417 None:intergenic 40.0%
GACAAAGAGAATATGAGAGC+TGG - chr4_3:56514488-56514507 Msa0649790:intron 40.0%
CTGAGAATTCTAATAGCAGC+TGG - chr4_3:56514524-56514543 Msa0649790:intron 40.0%
CATTGTTACCAGGTGAGAAT+TGG - chr4_3:56514660-56514679 Msa0649790:intron 40.0%
TCAAATGGGGAGTTGTAGAA+TGG - chr4_3:56514703-56514722 Msa0649790:intron 40.0%
CAAATGGGGAGTTGTAGAAT+GGG - chr4_3:56514704-56514723 Msa0649790:intron 40.0%
ATGGGAGTGAATGAAAAGGA+AGG - chr4_3:56514722-56514741 Msa0649790:intron 40.0%
!! GAAGGTGCTGTTGATGAAAA+TGG - chr4_3:56514740-56514759 Msa0649790:intron 40.0%
CTTTCTTTCCTTCTGTGTGG+GGG + chr4_3:56511043-56511062 None:intergenic 45.0%
! GGAGTGTCATCCATTGTTGA+GGG - chr4_3:56511071-56511090 Msa0649790:three_prime_UTR 45.0%
GAGTGTCATCCATTGTTGAG+GGG - chr4_3:56511072-56511091 Msa0649790:three_prime_UTR 45.0%
ATCGCTCACAAGCATATGTG+AGG - chr4_3:56511146-56511165 Msa0649790:three_prime_UTR 45.0%
TCATCATCCATTGGCAGTGA+AGG + chr4_3:56511180-56511199 None:intergenic 45.0%
CTCGTCAGGGATTGGATATT+TGG + chr4_3:56511247-56511266 None:intergenic 45.0%
CAAATATCCAATCCCTGACG+AGG - chr4_3:56511245-56511264 Msa0649790:exon 45.0%
ATACATACCTCGTCAGGGAT+TGG + chr4_3:56511255-56511274 None:intergenic 45.0%
ACTTCTTTCGGATCGATCGA+GGG + chr4_3:56511335-56511354 None:intergenic 45.0%
AACTTCTTTCGGATCGATCG+AGG + chr4_3:56511336-56511355 None:intergenic 45.0%
CTGTTCCTTGCATTCCATTC+AGG + chr4_3:56511359-56511378 None:intergenic 45.0%
TAGCTCGCTATCAAGATCAG+TGG + chr4_3:56511550-56511569 None:intergenic 45.0%
AATCCAGCATGGAAAGCCAT+TGG - chr4_3:56512745-56512764 Msa0649790:CDS 45.0%
TATCCAATGGCTTTCCATGC+TGG + chr4_3:56512751-56512770 None:intergenic 45.0%
!!! GGGTCTCTTTTTGGTGTCAT+TGG + chr4_3:56512803-56512822 None:intergenic 45.0%
!!! GTTGCTTTTGGAGTCTAGTG+TGG + chr4_3:56512905-56512924 None:intergenic 45.0%
!! GATGCGGTAATTGTTGGTTC+TGG - chr4_3:56512943-56512962 Msa0649790:CDS 45.0%
!! GTAATTGTTGGTTCTGGCTG+TGG - chr4_3:56512949-56512968 Msa0649790:CDS 45.0%
GCTTCTGTCCTATCAAAAGC+TGG - chr4_3:56512985-56513004 Msa0649790:CDS 45.0%
GTGGTGGTTCAGCTGTTAAT+TGG - chr4_3:56513160-56513179 Msa0649790:CDS 45.0%
! GGTGTTGAAAGAATGGTCAG+AGG - chr4_3:56513209-56513228 Msa0649790:CDS 45.0%
!! GTCCCTTGTTTCTCTCCTTT+TGG + chr4_3:56513444-56513463 None:intergenic 45.0%
TAACAGGATGCAAAGCTGAG+AGG - chr4_3:56513511-56513530 Msa0649790:intron 45.0%
CCGCTAGAAATCATCAATGG+AGG + chr4_3:56513684-56513703 None:intergenic 45.0%
TTAGCACGGGATGAAGATGA+AGG + chr4_3:56513734-56513753 None:intergenic 45.0%
TTCATCCCGTGCTAATGACA+TGG - chr4_3:56513739-56513758 Msa0649790:CDS 45.0%
TCATCCCGTGCTAATGACAT+GGG - chr4_3:56513740-56513759 Msa0649790:CDS 45.0%
TATCCCCATGTCATTAGCAC+GGG + chr4_3:56513747-56513766 None:intergenic 45.0%
GTATCCCCATGTCATTAGCA+CGG + chr4_3:56513748-56513767 None:intergenic 45.0%
TCGATCCTGTGATTCCTAAC+AGG - chr4_3:56514194-56514213 Msa0649790:intron 45.0%
CCTCATTCGCTTTACCTGTT+AGG + chr4_3:56514211-56514230 None:intergenic 45.0%
CCTAACAGGTAAAGCGAATG+AGG - chr4_3:56514208-56514227 Msa0649790:intron 45.0%
GCACTATATCCATGGGAATC+AGG - chr4_3:56514341-56514360 Msa0649790:intron 45.0%
TAGTCTAGTCCTGATTCCCA+TGG + chr4_3:56514353-56514372 None:intergenic 45.0%
AGGTGGACAAGTAACAACAG+AGG - chr4_3:56514436-56514455 Msa0649790:intron 45.0%
GGTGGACAAGTAACAACAGA+GGG - chr4_3:56514437-56514456 Msa0649790:intron 45.0%
GAAGTAGGAACACACAGAAG+TGG - chr4_3:56514554-56514573 Msa0649790:intron 45.0%
GGTAACAATGCTCCTTCCAT+TGG + chr4_3:56514650-56514669 None:intergenic 45.0%
!! ATGGAAGGAGCATTGTTACC+AGG - chr4_3:56514650-56514669 Msa0649790:intron 45.0%
CTTTCTTTCCTTCTGTGTGG+GGG + chr4_3:56511043-56511062 None:intergenic 45.0%
! GGAGTGTCATCCATTGTTGA+GGG - chr4_3:56511071-56511090 Msa0649790:three_prime_UTR 45.0%
GAGTGTCATCCATTGTTGAG+GGG - chr4_3:56511072-56511091 Msa0649790:three_prime_UTR 45.0%
ATCGCTCACAAGCATATGTG+AGG - chr4_3:56511146-56511165 Msa0649790:three_prime_UTR 45.0%
TCATCATCCATTGGCAGTGA+AGG + chr4_3:56511180-56511199 None:intergenic 45.0%
CTCGTCAGGGATTGGATATT+TGG + chr4_3:56511247-56511266 None:intergenic 45.0%
CAAATATCCAATCCCTGACG+AGG - chr4_3:56511245-56511264 Msa0649790:exon 45.0%
ATACATACCTCGTCAGGGAT+TGG + chr4_3:56511255-56511274 None:intergenic 45.0%
ACTTCTTTCGGATCGATCGA+GGG + chr4_3:56511335-56511354 None:intergenic 45.0%
AACTTCTTTCGGATCGATCG+AGG + chr4_3:56511336-56511355 None:intergenic 45.0%
CTGTTCCTTGCATTCCATTC+AGG + chr4_3:56511359-56511378 None:intergenic 45.0%
TAGCTCGCTATCAAGATCAG+TGG + chr4_3:56511550-56511569 None:intergenic 45.0%
AATCCAGCATGGAAAGCCAT+TGG - chr4_3:56512745-56512764 Msa0649790:CDS 45.0%
TATCCAATGGCTTTCCATGC+TGG + chr4_3:56512751-56512770 None:intergenic 45.0%
!!! GGGTCTCTTTTTGGTGTCAT+TGG + chr4_3:56512803-56512822 None:intergenic 45.0%
!!! GTTGCTTTTGGAGTCTAGTG+TGG + chr4_3:56512905-56512924 None:intergenic 45.0%
!! GATGCGGTAATTGTTGGTTC+TGG - chr4_3:56512943-56512962 Msa0649790:CDS 45.0%
!! GTAATTGTTGGTTCTGGCTG+TGG - chr4_3:56512949-56512968 Msa0649790:CDS 45.0%
GCTTCTGTCCTATCAAAAGC+TGG - chr4_3:56512985-56513004 Msa0649790:CDS 45.0%
GTGGTGGTTCAGCTGTTAAT+TGG - chr4_3:56513160-56513179 Msa0649790:CDS 45.0%
! GGTGTTGAAAGAATGGTCAG+AGG - chr4_3:56513209-56513228 Msa0649790:CDS 45.0%
!! GTCCCTTGTTTCTCTCCTTT+TGG + chr4_3:56513444-56513463 None:intergenic 45.0%
TAACAGGATGCAAAGCTGAG+AGG - chr4_3:56513511-56513530 Msa0649790:intron 45.0%
CCGCTAGAAATCATCAATGG+AGG + chr4_3:56513684-56513703 None:intergenic 45.0%
TTAGCACGGGATGAAGATGA+AGG + chr4_3:56513734-56513753 None:intergenic 45.0%
TTCATCCCGTGCTAATGACA+TGG - chr4_3:56513739-56513758 Msa0649790:CDS 45.0%
TCATCCCGTGCTAATGACAT+GGG - chr4_3:56513740-56513759 Msa0649790:CDS 45.0%
TATCCCCATGTCATTAGCAC+GGG + chr4_3:56513747-56513766 None:intergenic 45.0%
GTATCCCCATGTCATTAGCA+CGG + chr4_3:56513748-56513767 None:intergenic 45.0%
TCGATCCTGTGATTCCTAAC+AGG - chr4_3:56514194-56514213 Msa0649790:intron 45.0%
CCTCATTCGCTTTACCTGTT+AGG + chr4_3:56514211-56514230 None:intergenic 45.0%
CCTAACAGGTAAAGCGAATG+AGG - chr4_3:56514208-56514227 Msa0649790:intron 45.0%
GCACTATATCCATGGGAATC+AGG - chr4_3:56514341-56514360 Msa0649790:intron 45.0%
TAGTCTAGTCCTGATTCCCA+TGG + chr4_3:56514353-56514372 None:intergenic 45.0%
AGGTGGACAAGTAACAACAG+AGG - chr4_3:56514436-56514455 Msa0649790:intron 45.0%
GGTGGACAAGTAACAACAGA+GGG - chr4_3:56514437-56514456 Msa0649790:intron 45.0%
GAAGTAGGAACACACAGAAG+TGG - chr4_3:56514554-56514573 Msa0649790:intron 45.0%
GGTAACAATGCTCCTTCCAT+TGG + chr4_3:56514650-56514669 None:intergenic 45.0%
!! ATGGAAGGAGCATTGTTACC+AGG - chr4_3:56514650-56514669 Msa0649790:intron 45.0%
!!! TTTTTTTTTTTTTATAAACA+TGG - chr4_3:56513841-56513860 Msa0649790:intron 5.0%
!!! TTTTTTTTTTTTTATAAACA+TGG - chr4_3:56513841-56513860 Msa0649790:intron 5.0%
GAAAAACTCCCCCACACAGA+AGG - chr4_3:56511032-56511051 Msa0649790:three_prime_UTR 50.0%
!! GGGAGTGTCATCCATTGTTG+AGG - chr4_3:56511070-56511089 Msa0649790:three_prime_UTR 50.0%
TCTCTCACACCCCTCAACAA+TGG + chr4_3:56511084-56511103 None:intergenic 50.0%
AGGAACAGCTTCGATGTGCA+TGG - chr4_3:56511371-56511390 Msa0649790:CDS 50.0%
AACAGCTTCGATGTGCATGG+TGG - chr4_3:56511374-56511393 Msa0649790:CDS 50.0%
ACAGCTTCGATGTGCATGGT+GGG - chr4_3:56511375-56511394 Msa0649790:CDS 50.0%
ATGGCTTCTAGCAACGAGGT+TGG - chr4_3:56512404-56512423 Msa0649790:CDS 50.0%
TGGCTTCTAGCAACGAGGTT+GGG - chr4_3:56512405-56512424 Msa0649790:CDS 50.0%
TGGAGTCTAGTGTGGCATTG+AGG + chr4_3:56512897-56512916 None:intergenic 50.0%
!! ATTGTTGGTTCTGGCTGTGG+AGG - chr4_3:56512952-56512971 Msa0649790:CDS 50.0%
TTGGCAGGTTCAACAGTAGG+TGG - chr4_3:56513141-56513160 Msa0649790:CDS 50.0%
CATCCCGTGCTAATGACATG+GGG - chr4_3:56513741-56513760 Msa0649790:CDS 50.0%
TGATTACGCGCTGTTACGAG+TGG + chr4_3:56513963-56513982 None:intergenic 50.0%
ACAGGTAAAGCGAATGAGGG+AGG - chr4_3:56514212-56514231 Msa0649790:intron 50.0%
GTAGGAACACACAGAAGTGG+TGG - chr4_3:56514557-56514576 Msa0649790:intron 50.0%
GTGAGAGTTGGGAAGCTGAA+GGG - chr4_3:56514762-56514781 Msa0649790:intron 50.0%
AGTGTGCTTCCAACTGCTGT+TGG - chr4_3:56514803-56514822 Msa0649790:intron 50.0%
GGGTTAACACCAACAGCAGT+TGG + chr4_3:56514815-56514834 None:intergenic 50.0%
GAAAAACTCCCCCACACAGA+AGG - chr4_3:56511032-56511051 Msa0649790:three_prime_UTR 50.0%
!! GGGAGTGTCATCCATTGTTG+AGG - chr4_3:56511070-56511089 Msa0649790:three_prime_UTR 50.0%
TCTCTCACACCCCTCAACAA+TGG + chr4_3:56511084-56511103 None:intergenic 50.0%
AGGAACAGCTTCGATGTGCA+TGG - chr4_3:56511371-56511390 Msa0649790:CDS 50.0%
AACAGCTTCGATGTGCATGG+TGG - chr4_3:56511374-56511393 Msa0649790:CDS 50.0%
ACAGCTTCGATGTGCATGGT+GGG - chr4_3:56511375-56511394 Msa0649790:CDS 50.0%
ATGGCTTCTAGCAACGAGGT+TGG - chr4_3:56512404-56512423 Msa0649790:CDS 50.0%
TGGCTTCTAGCAACGAGGTT+GGG - chr4_3:56512405-56512424 Msa0649790:CDS 50.0%
TGGAGTCTAGTGTGGCATTG+AGG + chr4_3:56512897-56512916 None:intergenic 50.0%
!! ATTGTTGGTTCTGGCTGTGG+AGG - chr4_3:56512952-56512971 Msa0649790:CDS 50.0%
TTGGCAGGTTCAACAGTAGG+TGG - chr4_3:56513141-56513160 Msa0649790:CDS 50.0%
CATCCCGTGCTAATGACATG+GGG - chr4_3:56513741-56513760 Msa0649790:CDS 50.0%
TGATTACGCGCTGTTACGAG+TGG + chr4_3:56513963-56513982 None:intergenic 50.0%
ACAGGTAAAGCGAATGAGGG+AGG - chr4_3:56514212-56514231 Msa0649790:intron 50.0%
GTAGGAACACACAGAAGTGG+TGG - chr4_3:56514557-56514576 Msa0649790:intron 50.0%
GTGAGAGTTGGGAAGCTGAA+GGG - chr4_3:56514762-56514781 Msa0649790:intron 50.0%
AGTGTGCTTCCAACTGCTGT+TGG - chr4_3:56514803-56514822 Msa0649790:intron 50.0%
GGGTTAACACCAACAGCAGT+TGG + chr4_3:56514815-56514834 None:intergenic 50.0%
TTCGGATCGATCGAGGGAGA+GGG + chr4_3:56511329-56511348 None:intergenic 55.0%
TTTCGGATCGATCGAGGGAG+AGG + chr4_3:56511330-56511349 None:intergenic 55.0%
GCAGGTTCAACAGTAGGTGG+TGG - chr4_3:56513144-56513163 Msa0649790:CDS 55.0%
ATGTCTCAGGTTCGAGGCAG+TGG + chr4_3:56513916-56513935 None:intergenic 55.0%
GCAGCTGGAGCAGTTGAAGT+AGG - chr4_3:56514539-56514558 Msa0649790:intron 55.0%
GGTGAGAGTTGGGAAGCTGA+AGG - chr4_3:56514761-56514780 Msa0649790:intron 55.0%
TTCGGATCGATCGAGGGAGA+GGG + chr4_3:56511329-56511348 None:intergenic 55.0%
TTTCGGATCGATCGAGGGAG+AGG + chr4_3:56511330-56511349 None:intergenic 55.0%
GCAGGTTCAACAGTAGGTGG+TGG - chr4_3:56513144-56513163 Msa0649790:CDS 55.0%
ATGTCTCAGGTTCGAGGCAG+TGG + chr4_3:56513916-56513935 None:intergenic 55.0%
GCAGCTGGAGCAGTTGAAGT+AGG - chr4_3:56514539-56514558 Msa0649790:intron 55.0%
GGTGAGAGTTGGGAAGCTGA+AGG - chr4_3:56514761-56514780 Msa0649790:intron 55.0%
TCGATCGAGGGAGAGGGAGA+GGG + chr4_3:56511323-56511342 None:intergenic 60.0%
ATCGATCGAGGGAGAGGGAG+AGG + chr4_3:56511324-56511343 None:intergenic 60.0%
!! GTTGGTTCTGGCTGTGGAGG+AGG - chr4_3:56512955-56512974 Msa0649790:CDS 60.0%
TCGATCGAGGGAGAGGGAGA+GGG + chr4_3:56511323-56511342 None:intergenic 60.0%
ATCGATCGAGGGAGAGGGAG+AGG + chr4_3:56511324-56511343 None:intergenic 60.0%
!! GTTGGTTCTGGCTGTGGAGG+AGG - chr4_3:56512955-56512974 Msa0649790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56511031 56515138 56511031 ID=Msa0649790;Name=Msa0649790
chr4_3 mRNA 56511031 56515138 56511031 ID=Msa0649790-mRNA-1;Parent=Msa0649790;Name=Msa0649790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=32|1|1|1|1|1|4|225|747
chr4_3 exon 56511031 56511953 56511031 ID=Msa0649790-mRNA-1:exon:14737;Parent=Msa0649790-mRNA-1
chr4_3 exon 56512374 56513442 56512374 ID=Msa0649790-mRNA-1:exon:14736;Parent=Msa0649790-mRNA-1
chr4_3 exon 56513555 56513827 56513555 ID=Msa0649790-mRNA-1:exon:14735;Parent=Msa0649790-mRNA-1
chr4_3 exon 56514903 56515138 56514903 ID=Msa0649790-mRNA-1:exon:14734;Parent=Msa0649790-mRNA-1
chr4_3 five_prime_UTR 56515107 56515138 56515107 ID=Msa0649790-mRNA-1:five_prime_utr;Parent=Msa0649790-mRNA-1
chr4_3 CDS 56514903 56515106 56514903 ID=Msa0649790-mRNA-1:cds;Parent=Msa0649790-mRNA-1
chr4_3 CDS 56513555 56513827 56513555 ID=Msa0649790-mRNA-1:cds;Parent=Msa0649790-mRNA-1
chr4_3 CDS 56512374 56513442 56512374 ID=Msa0649790-mRNA-1:cds;Parent=Msa0649790-mRNA-1
chr4_3 CDS 56511256 56511953 56511256 ID=Msa0649790-mRNA-1:cds;Parent=Msa0649790-mRNA-1
chr4_3 three_prime_UTR 56511031 56511255 56511031 ID=Msa0649790-mRNA-1:three_prime_utr;Parent=Msa0649790-mRNA-1
Gene Sequence

>Msa0649790

ATGAGAAGGGAGTGTCATCCATTGTTGAGGGGTGTGAGAGAGAATCGCAAATACAAACATGGATTTTCTGTGGCTGAGATGAAATCGCTCACAAGCATATGTGAGGTTATGTTTCCTTCACTGCCAATGGATGATGATGAATCAAGCAAGGATGTGCAGTCTTTCTTCAACATCTCTGCTTCCAAATATCCAATCCCTGACGAGGTTGCTGAGATGTTAGCAAAGAGGGCTGTAATAGAAGCAGTAATATTGATTAGAGTGATTTTATGGCTTCTAGCAACGAGGTTGGGCACTTTCTTGATTTGTGGTTTGCTATGCCTCAGTAAGAAATGGCCCTTTATCAGCAACTTCTCAAGCTTGTCTTTGGATAAAAGAGAAAAGATTGTGCAGAGGGCTCTCAAGCATAAATTCTTCACTCCTTTTAGAATTGCATTCGTTTACATCAAAATCCTATGCCTCTTTGTTTTCTTCTCTTGGGTTGATGAAAATGGTGATAATCCAGCATGGAAAGCCATTGGATATGAAGTATCAACAGCTGATGAGAAAATGACCAATGACACCAAAAAGAGACCCCTTGAAAAAGGAATTATAGAAAGCATGCATGAACATGACACAACTCTTCAACAATCTCTATCTAACAAAGGCCTCAATGCCACACTAGACTCCAAAAGCAACATCCTCAAAATCAAATGTGATGCGGTAATTGTTGGTTCTGGCTGTGGAGGAGGTGTTGCAGCTTCTGTCCTATCAAAAGCTGGCTACAAAGTGGTTGTTCTAGAGAAAGGAAACTATTTTGTTCCCGAAGATTATTCATCACTAGAAGGTCCTTCAATGGACCAACAATATGAAAATGGAGGGATCCTAGCTTCTATTGATTCAAGAATACTTATTTTGGCAGGTTCAACAGTAGGTGGTGGTTCAGCTGTTAATTGGTCAGCTTGCATTAAAACACCAGAAAAGGTGTTGAAAGAATGGTCAGAGGAACACAAACTTTCACTATTTGAAAGCATAGAGTATCTATCTGCTATGGAAACTGTTTGTGAGAGGATTGGTGTCAATGAAAATTGTACACAAGAAGGATTCCAAAATCAAGTATTAAGAAAAGGGTGTCAAAATCTTGGCTTAAAAGTTGATTATGTGCCAAGAAATTCACCAGGGAATCATTATTGTGGTTCATGTGGTTATGGTTGTCCAAAAGGAGAGAAACAAGGGACTCAAGTTACATGGCTTGTAGATGCTGTTGAAAAAGGTGCTGTGATAATAACAGGATGCAAAGCTGAGAGGTTTTTGTTTGAAAATAGTTACAAGAATGGAAACAACAGAAAGAAGAAATGTTTGGGAGTTTTGGCGAAGACTTTAAGTAGTGGAGTCACAATGAATCTACAATTTGAAGCAAAAGTAACAATTTCAGCAGGTGGAGCACTTCTAACACCTCCATTGATGATTTCTAGCGGTTTAAAGAATAAAAACATTGGTAGAAACCTTCATCTTCATCCCGTGCTAATGACATGGGGATACTTTCCAGAATCAAAATCAGATCTCAAAGGTAAAGCGAATGAGGGAGGAATAATCACATCTGTCCATAGAGTACCATCATCATCAAATGATGATTCAATATCCGATACAAGAGCAATAATTGAAACACCATTACTAGGACCATCATCATATTCAGCACTATATCCATGGGAATCAGGACTAGACTACAAACAAAGAATGCTAAATTATCCAAGAACAGCACACTTCATAACAATAATAAGAGACAAAGCAGGTGGACAAGTAACAACAGAGGGAAGAATCCGCTACAAATTGAATTCAATCGACAAAGAGAATATGAGAGCTGGTATACAACAAGCACTGAGAATTCTAATAGCAGCTGGAGCAGTTGAAGTAGGAACACACAGAAGTGGTGGTCAGAGAATTAAGTGTAATGAGAACACTAGCGAAAAGGAAATCGAAGAGTTTATAGATAGTGTTTATCCAATGGAAGGAGCATTGTTACCAGGTGAGAATTGGAATTTGTATACTTCTGCTCATCAAATGGGGAGTTGTAGAATGGGAGTGAATGAAAAGGAAGGTGCTGTTGATGAAAATGGTGAGAGTTGGGAAGCTGAAGGGTTATTTGTTTGTGATGCTAGTGTGCTTCCAACTGCTGTTGGTGTTAACCCTATGATTACTATTCAATCAACTGCATTTTGTATTTCAAATAGGATTGTAGATTTTCTTGGAAAGGGTCGAGAACCATAA
Protein sequence

>Msa0649790

MRRECHPLLRGVRENRKYKHGFSVAEMKSLTSICEVMFPSLPMDDDESSKDVQSFFNISASKYPIPDEVAEMLAKRAVIEAVILIRVILWLLATRLGTFLICGLLCLSKKWPFISNFSSLSLDKREKIVQRALKHKFFTPFRIAFVYIKILCLFVFFSWVDENGDNPAWKAIGYEVSTADEKMTNDTKKRPLEKGIIESMHEHDTTLQQSLSNKGLNATLDSKSNILKIKCDAVIVGSGCGGGVAASVLSKAGYKVVVLEKGNYFVPEDYSSLEGPSMDQQYENGGILASIDSRILILAGSTVGGGSAVNWSACIKTPEKVLKEWSEEHKLSLFESIEYLSAMETVCERIGVNENCTQEGFQNQVLRKGCQNLGLKVDYVPRNSPGNHYCGSCGYGCPKGEKQGTQVTWLVDAVEKGAVIITGCKAERFLFENSYKNGNNRKKKCLGVLAKTLSSGVTMNLQFEAKVTISAGGALLTPPLMISSGLKNKNIGRNLHLHPVLMTWGYFPESKSDLKGKANEGGIITSVHRVPSSSNDDSISDTRAIIETPLLGPSSYSALYPWESGLDYKQRMLNYPRTAHFITIIRDKAGGQVTTEGRIRYKLNSIDKENMRAGIQQALRILIAAGAVEVGTHRSGGQRIKCNENTSEKEIEEFIDSVYPMEGALLPGENWNLYTSAHQMGSCRMGVNEKEGAVDENGESWEAEGLFVCDASVLPTAVGVNPMITIQSTAFCISNRIVDFLGKGREP*