Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691870 | XP_003607656.2 | 94.828 | 754 | 32 | 3 | 1 | 747 | 1 | 754 | 0.0 | 1417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691870 | sp|B5WWZ8|FAO1_LOTJA | 78.667 | 750 | 149 | 5 | 1 | 743 | 1 | 746 | 0.0 | 1206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691870 | G7JDV8 | 94.828 | 754 | 32 | 3 | 1 | 747 | 1 | 754 | 0.0 | 1417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609100 | Msa0691870 | 0.875053 | 4.171245e-68 | -8.615850e-47 |
| Msa0649790 | Msa0691870 | 0.917075 | 8.252868e-86 | -8.615850e-47 |
| Msa0691870 | Msa0930820 | 0.800249 | 1.574879e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691870 | MtrunA17_Chr4g0041761 | 89.907 | 753 | 70 | 2 | 1 | 747 | 10 | 762 | 0.0 | 1379 |
| Msa0691870 | MtrunA17_Chr7g0261561 | 56.662 | 743 | 306 | 10 | 4 | 741 | 3 | 734 | 0.0 | 832 |
| Msa0691870 | MtrunA17_Chr1g0187391 | 58.763 | 582 | 173 | 8 | 161 | 741 | 3 | 518 | 0.0 | 674 |
| Msa0691870 | MtrunA17_Chr5g0408241 | 43.295 | 783 | 378 | 15 | 12 | 745 | 64 | 829 | 0.0 | 588 |
| Msa0691870 | MtrunA17_Chr8g0369761 | 42.672 | 771 | 381 | 14 | 19 | 745 | 57 | 810 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691870 | AT3G23410.1 | 58.776 | 735 | 285 | 4 | 22 | 744 | 15 | 743 | 0.0 | 865 |
| Msa0691870 | AT3G23410.2 | 61.152 | 677 | 254 | 3 | 71 | 744 | 5 | 675 | 0.0 | 835 |
| Msa0691870 | AT4G28570.1 | 56.376 | 745 | 311 | 5 | 2 | 741 | 7 | 742 | 0.0 | 833 |
| Msa0691870 | AT4G28570.2 | 56.376 | 745 | 311 | 5 | 2 | 741 | 7 | 742 | 0.0 | 833 |
| Msa0691870 | AT1G03990.1 | 50.199 | 755 | 351 | 11 | 7 | 746 | 13 | 757 | 0.0 | 741 |
| Msa0691870 | AT4G19380.2 | 42.838 | 754 | 386 | 15 | 18 | 745 | 34 | 768 | 0.0 | 555 |
| Msa0691870 | AT4G19380.1 | 43.087 | 745 | 379 | 15 | 27 | 745 | 1 | 726 | 0.0 | 550 |
Find 155 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCTTGTTTCTCTCCTTT+TGG | 0.180580 | 4_4:-60186587 | None:intergenic |
| GAAGAAATGTTTGGGAGTTT+TGG | 0.193859 | 4_4:+60186721 | Msa0691870:CDS |
| TGATTCAAGAATACTTATTT+TGG | 0.221568 | 4_4:+60186268 | Msa0691870:CDS |
| CTCGTCAGGGATTGGATATT+TGG | 0.232443 | 4_4:-60184570 | None:intergenic |
| GAGTTCACATTACCATAATT+TGG | 0.234565 | 4_4:-60188176 | None:intergenic |
| CATGAAAATTAACAATCTTA+TGG | 0.270382 | 4_4:-60188049 | None:intergenic |
| CAACTTCTCAAGCTTGTCTT+TGG | 0.272508 | 4_4:+60185630 | Msa0691870:CDS |
| TGATTCCCTGGTGAATTTCT+TGG | 0.279412 | 4_4:-60186536 | None:intergenic |
| GCTTGAGAAGTTGCTGATAA+AGG | 0.301467 | 4_4:-60185620 | None:intergenic |
| ATGGACCAACAATATGAAAA+TGG | 0.302883 | 4_4:+60186227 | Msa0691870:CDS |
| TATTGTGGTTCATGTGGTTA+TGG | 0.314221 | 4_4:+60186560 | Msa0691870:CDS |
| TAAACGAATGCAATTCTAAA+AGG | 0.317923 | 4_4:-60185703 | None:intergenic |
| AATAAAAGATCACCAAATTA+TGG | 0.323538 | 4_4:+60188164 | Msa0691870:three_prime_UTR |
| GAAGGTGCTGTTGATGAAAA+TGG | 0.336026 | 4_4:+60187881 | Msa0691870:CDS |
| GTTGATTGAATAGTAATCAT+AGG | 0.337491 | 4_4:-60187974 | None:intergenic |
| ATCTTTCTTTCCTTCTGTGT+GGG | 0.341175 | 4_4:-60184368 | None:intergenic |
| CAACAGAAAGAAGAAATGTT+TGG | 0.349734 | 4_4:+60186712 | Msa0691870:CDS |
| CATTGTTACCAGGTGAGAAT+TGG | 0.351996 | 4_4:+60187801 | Msa0691870:CDS |
| GTTATGAAGTGTGCTGTTCT+TGG | 0.357460 | 4_4:-60187536 | None:intergenic |
| GCACTATATCCATGGGAATC+AGG | 0.366958 | 4_4:+60187482 | Msa0691870:CDS |
| TTCTAGTGATGAATAATCTT+CGG | 0.371885 | 4_4:-60186195 | None:intergenic |
| AGAAAAGGGTGTCAAAATCT+TGG | 0.379576 | 4_4:+60186494 | Msa0691870:CDS |
| TTGGGCACTTTCTTGATTTG+TGG | 0.380021 | 4_4:+60185571 | Msa0691870:CDS |
| GTATACTTCTGCTCATCAAA+TGG | 0.389845 | 4_4:+60187829 | Msa0691870:CDS |
| TTTGAAAATAGTTACAAGAA+TGG | 0.393141 | 4_4:+60186686 | Msa0691870:CDS |
| TATACTTCTGCTCATCAAAT+GGG | 0.393187 | 4_4:+60187830 | Msa0691870:CDS |
| TATCCAATGGCTTTCCATGC+TGG | 0.395200 | 4_4:-60185894 | None:intergenic |
| AACAGAAAGAAGAAATGTTT+GGG | 0.405430 | 4_4:+60186713 | Msa0691870:CDS |
| CAAAATCAAGTATTAAGAAA+AGG | 0.411212 | 4_4:+60186479 | Msa0691870:CDS |
| TCTAGTGATGAATAATCTTC+GGG | 0.422485 | 4_4:-60186194 | None:intergenic |
| TGTGGTTATGGTTGTCCAAA+AGG | 0.434505 | 4_4:+60186572 | Msa0691870:CDS |
| CTTGAGAAGTTGCTGATAAA+GGG | 0.437565 | 4_4:-60185619 | None:intergenic |
| TTCAATTATTGCTCTTGTAT+CGG | 0.438986 | 4_4:-60187429 | None:intergenic |
| CTTGTAGATGCTGTTGAAAA+AGG | 0.445193 | 4_4:+60186623 | Msa0691870:CDS |
| TTGATGATGATGGTACTCTA+TGG | 0.447920 | 4_4:-60187391 | None:intergenic |
| GTGGTGGTTCAGCTGTTAAT+TGG | 0.455365 | 4_4:+60186306 | Msa0691870:CDS |
| TGGCTTCTAGCAACGAGGTT+GGG | 0.458420 | 4_4:+60185553 | Msa0691870:CDS |
| ACATACATACATACCTCGTC+AGG | 0.461078 | 4_4:-60184584 | None:intergenic |
| TGCTATGCCTCAGTAAGAAA+TGG | 0.464395 | 4_4:+60185596 | Msa0691870:CDS |
| AAAATCAAGTATTAAGAAAA+GGG | 0.465765 | 4_4:+60186480 | Msa0691870:CDS |
| TCATATTGTTGGTCCATTGA+AGG | 0.466560 | 4_4:-60186221 | None:intergenic |
| AAAGGTGCTGTGATAATAAC+AGG | 0.471872 | 4_4:+60186641 | Msa0691870:CDS |
| CATATTCAGCACTATATCCA+TGG | 0.471948 | 4_4:+60187474 | Msa0691870:CDS |
| TATGTTTCCTTCACTGCCAA+TGG | 0.474427 | 4_4:+60184496 | Msa0691870:CDS |
| TTGGCAAAGACTTTAAATAG+TGG | 0.477110 | 4_4:+60186740 | Msa0691870:CDS |
| TCAAATGGGGAGTTGTAGAA+TGG | 0.477133 | 4_4:+60187844 | Msa0691870:CDS |
| TTGCATTAAAACACCAGAAA+AGG | 0.481522 | 4_4:+60186334 | Msa0691870:CDS |
| GTTGGATCTGGCTGTGGAGG+AGG | 0.483369 | 4_4:+60186101 | Msa0691870:CDS |
| GGTAACAATGCTCCTTCCAT+TGG | 0.483905 | 4_4:-60187788 | None:intergenic |
| CAGAAAAGGTGTTGAAAGAA+TGG | 0.485140 | 4_4:+60186348 | Msa0691870:CDS |
| AAATGTGATGCGGTAATTGT+TGG | 0.487655 | 4_4:+60186083 | Msa0691870:CDS |
| CTTGATTCATCATCATCCAT+TGG | 0.494921 | 4_4:-60184512 | None:intergenic |
| TGATGAAAATGGTGAGAGTT+GGG | 0.496388 | 4_4:+60187892 | Msa0691870:CDS |
| CCTAACAGGTAAAGCGAATG+AGG | 0.496951 | 4_4:+60187349 | Msa0691870:intron |
| CATCTTTCTTTCCTTCTGTG+TGG | 0.498057 | 4_4:-60184369 | None:intergenic |
| ATACATACCTCGTCAGGGAT+TGG | 0.499058 | 4_4:-60184578 | None:intergenic |
| CATAGAGTATCTATCTGCTA+TGG | 0.499902 | 4_4:+60186403 | Msa0691870:CDS |
| GCAGGTTCAACAGTAGGTGG+TGG | 0.500248 | 4_4:+60186290 | Msa0691870:CDS |
| CTTTCTTTCCTTCTGTGTGG+GGG | 0.500400 | 4_4:-60184366 | None:intergenic |
| GAAGATTATTCATCACTAGA+AGG | 0.507111 | 4_4:+60186197 | Msa0691870:CDS |
| AAAGTGGTTGTTCTAGAGAA+AGG | 0.509206 | 4_4:+60186158 | Msa0691870:CDS |
| GAATCATCATTTGATGATGA+TGG | 0.513986 | 4_4:-60187401 | None:intergenic |
| ATCACTAGAAGGTCCTTCAA+TGG | 0.515670 | 4_4:+60186208 | Msa0691870:CDS |
| AGTGTGCTTCCAACTGCTGT+TGG | 0.516894 | 4_4:+60187944 | Msa0691870:CDS |
| ATTGTTGGATCTGGCTGTGG+AGG | 0.516931 | 4_4:+60186098 | Msa0691870:CDS |
| TAATGAGAACACTAGCGAAA+AGG | 0.517011 | 4_4:+60187736 | Msa0691870:CDS |
| TCTTTCTTTCCTTCTGTGTG+GGG | 0.518154 | 4_4:-60184367 | None:intergenic |
| TGCTGAGATGTTAGCAAAGA+GGG | 0.518378 | 4_4:+60185492 | Msa0691870:CDS |
| AGAAGAAAACAAAGAGGCAT+AGG | 0.523278 | 4_4:-60185735 | None:intergenic |
| AGAAGGAAAGAAAGATGAGA+AGG | 0.523803 | 4_4:+60184375 | Msa0691870:exon |
| GCAGCAGGAGCAGTTGAAGT+AGG | 0.525512 | 4_4:+60187680 | Msa0691870:CDS |
| CTGAGAATTCTAATAGCAGC+AGG | 0.529888 | 4_4:+60187665 | Msa0691870:CDS |
| AATGAAAATTGTACACAAGA+AGG | 0.531263 | 4_4:+60186452 | Msa0691870:CDS |
| TCATCATCCATTGGCAGTGA+AGG | 0.531597 | 4_4:-60184503 | None:intergenic |
| TTGATTGAATAGTAATCATA+GGG | 0.531890 | 4_4:-60187973 | None:intergenic |
| TGGAGTCTAGTGTGACATTG+AGG | 0.534001 | 4_4:-60186040 | None:intergenic |
| TGTTGATACTTCATATCCAA+TGG | 0.534466 | 4_4:-60185907 | None:intergenic |
| AATCCAGCATGGAAAGCCAT+TGG | 0.536851 | 4_4:+60185891 | Msa0691870:CDS |
| ATAATTGAAACACCATTACT+AGG | 0.540718 | 4_4:+60187443 | Msa0691870:CDS |
| TATAGATAGTGTTTATCCAA+TGG | 0.540962 | 4_4:+60187772 | Msa0691870:CDS |
| ATGGCTTCTAGCAACGAGGT+TGG | 0.542866 | 4_4:+60185552 | Msa0691870:CDS |
| AAACCACTAGAAATCATCAA+TGG | 0.546914 | 4_4:-60186830 | None:intergenic |
| TTGATGAAAATGGTGAGAGT+TGG | 0.551525 | 4_4:+60187891 | Msa0691870:CDS |
| AAGAGAAAAGATTGTGCAGA+GGG | 0.551533 | 4_4:+60185657 | Msa0691870:CDS |
| CAAATGGGGAGTTGTAGAAT+GGG | 0.552016 | 4_4:+60187845 | Msa0691870:CDS |
| TTCATCCCGTGCTAATGACA+TGG | 0.554731 | 4_4:+60186885 | Msa0691870:CDS |
| GGGTTAACACCAACAGCAGT+TGG | 0.556806 | 4_4:-60187953 | None:intergenic |
| GAACCACAATAATGATTCCC+TGG | 0.558303 | 4_4:-60186548 | None:intergenic |
| AATCATTATTGTGGTTCATG+TGG | 0.563673 | 4_4:+60186554 | Msa0691870:CDS |
| GTAATTGTTGGATCTGGCTG+TGG | 0.567573 | 4_4:+60186095 | Msa0691870:CDS |
| TATCCCCATGTCATTAGCAC+GGG | 0.567787 | 4_4:-60186890 | None:intergenic |
| GACAAAGAGAATATGAGAGC+TGG | 0.568725 | 4_4:+60187629 | Msa0691870:CDS |
| GCAAAAGTAACAATTTCAGC+AGG | 0.569600 | 4_4:+60186788 | Msa0691870:CDS |
| TTAGCACGGGATGAAGATGA+AGG | 0.570366 | 4_4:-60186877 | None:intergenic |
| TAGTCTAGTCCTGATTCCCA+TGG | 0.571034 | 4_4:-60187491 | None:intergenic |
| GGTGAGAGTTGGGAAGCTGA+AGG | 0.571561 | 4_4:+60187902 | Msa0691870:CDS |
| GTGAGAGTTGGGAAGCTGAA+GGG | 0.574364 | 4_4:+60187903 | Msa0691870:CDS |
| GCTTCTGTACTATCAAAAGC+TGG | 0.574441 | 4_4:+60186131 | Msa0691870:CDS |
| GATGCGGTAATTGTTGGATC+TGG | 0.576919 | 4_4:+60186089 | Msa0691870:CDS |
| ATGGAAGGAGCATTGTTACC+AGG | 0.577349 | 4_4:+60187791 | Msa0691870:CDS |
| GACCAACAATATGAAAATGG+AGG | 0.578079 | 4_4:+60186230 | Msa0691870:CDS |
| TCATCCCGTGCTAATGACAT+GGG | 0.581174 | 4_4:+60186886 | Msa0691870:CDS |
| GGGAGTGTCATCCATTGTTG+AGG | 0.581648 | 4_4:+60184396 | Msa0691870:CDS |
| TCACCAGGGAATCATTATTG+TGG | 0.584122 | 4_4:+60186545 | Msa0691870:CDS |
| TCTCTCACACCCCTCAACAA+TGG | 0.586246 | 4_4:-60184407 | None:intergenic |
| CGATTGAATTCAATTTGTAG+CGG | 0.586554 | 4_4:-60187607 | None:intergenic |
| AACAAGGGACTCAAGTTACA+TGG | 0.588903 | 4_4:+60186600 | Msa0691870:CDS |
| GATAGTGTTTATCCAATGGA+AGG | 0.590334 | 4_4:+60187776 | Msa0691870:CDS |
| TACAAATTCCAATTCTCACC+TGG | 0.591010 | 4_4:-60187809 | None:intergenic |
| TTGGCAGGTTCAACAGTAGG+TGG | 0.592216 | 4_4:+60186287 | Msa0691870:CDS |
| CCTCCATTGATGATTTCTAG+TGG | 0.592440 | 4_4:+60186827 | Msa0691870:CDS |
| GGAGTGTCATCCATTGTTGA+GGG | 0.596554 | 4_4:+60184397 | Msa0691870:CDS |
| AAAGTAACAATTTCAGCAGG+TGG | 0.598692 | 4_4:+60186791 | Msa0691870:CDS |
| AGTTGTGTCATGTTCATGCA+TGG | 0.599087 | 4_4:-60185991 | None:intergenic |
| GAAACTGTGTGTGAGAGGAT+TGG | 0.599841 | 4_4:+60186425 | Msa0691870:CDS |
| CTATGGAAACTGTGTGTGAG+AGG | 0.600732 | 4_4:+60186420 | Msa0691870:CDS |
| TTCTTGAATCAATAGAAGCT+AGG | 0.600875 | 4_4:-60186256 | None:intergenic |
| GAAGGAAAGAAAGATGAGAA+GGG | 0.601594 | 4_4:+60184376 | Msa0691870:exon |
| GTATCCCCATGTCATTAGCA+CGG | 0.602417 | 4_4:-60186891 | None:intergenic |
| ACCAACAATATGAAAATGGA+GGG | 0.602438 | 4_4:+60186231 | Msa0691870:CDS |
| ATATTCAGCACTATATCCAT+GGG | 0.603766 | 4_4:+60187475 | Msa0691870:CDS |
| CAACAATCTCTATCTAACAA+AGG | 0.604364 | 4_4:+60186017 | Msa0691870:CDS |
| GGTGGACAAGTAACAACAGA+GGG | 0.615575 | 4_4:+60187578 | Msa0691870:CDS |
| ATCAAAAGCTGGCTACAAAG+TGG | 0.620974 | 4_4:+60186142 | Msa0691870:CDS |
| TAAAGGGCCATTTCTTACTG+AGG | 0.621637 | 4_4:-60185603 | None:intergenic |
| CAAATATCCAATCCCTGACG+AGG | 0.622503 | 4_4:+60184571 | Msa0691870:CDS |
| TATAGTGCTGAATATGATGA+TGG | 0.622796 | 4_4:-60187467 | None:intergenic |
| TGTCCAAAAGGAGAGAAACA+AGG | 0.624436 | 4_4:+60186584 | Msa0691870:CDS |
| ACAATAATAAGAGACAAAGC+AGG | 0.625178 | 4_4:+60187557 | Msa0691870:CDS |
| CTAACAGGTAAAGCGAATGA+GGG | 0.633458 | 4_4:+60187350 | Msa0691870:intron |
| GAATCAAAATCAGATCTCAA+AGG | 0.635229 | 4_4:+60186920 | Msa0691870:CDS |
| GAAGTAGGAACACACAGAAG+TGG | 0.639178 | 4_4:+60187695 | Msa0691870:CDS |
| CCCAAGAGAAGAAAACAAAG+AGG | 0.641068 | 4_4:-60185741 | None:intergenic |
| TTGCTGAGATGTTAGCAAAG+AGG | 0.642160 | 4_4:+60185491 | Msa0691870:CDS |
| AAAATGGTGATAATCCAGCA+TGG | 0.647627 | 4_4:+60185880 | Msa0691870:CDS |
| TATGATGATGGTCCTAGTAA+TGG | 0.648405 | 4_4:-60187455 | None:intergenic |
| CCTCAAAATCAAATGTGATG+CGG | 0.648723 | 4_4:+60186073 | Msa0691870:CDS |
| ACAGGTAAAGCGAATGAGGG+AGG | 0.655166 | 4_4:+60187353 | Msa0691870:intron |
| GAGAATCGCAAATACAAACA+TGG | 0.657233 | 4_4:+60184428 | Msa0691870:CDS |
| ATCGCTCACAAGCATATGTG+AGG | 0.657257 | 4_4:+60184472 | Msa0691870:CDS |
| CCACTAGAAATCATCAATGG+AGG | 0.657441 | 4_4:-60186827 | None:intergenic |
| GGTGTTGAAAGAATGGTCAG+AGG | 0.659062 | 4_4:+60186355 | Msa0691870:CDS |
| GTCCAAAAGGAGAGAAACAA+GGG | 0.659274 | 4_4:+60186585 | Msa0691870:CDS |
| TATGTGCCAAGAAATTCACC+AGG | 0.661064 | 4_4:+60186530 | Msa0691870:CDS |
| ATAATAAGAGACAAAGCAGG+TGG | 0.661476 | 4_4:+60187560 | Msa0691870:CDS |
| GTAGGAACACACAGAAGTGG+TGG | 0.662276 | 4_4:+60187698 | Msa0691870:CDS |
| ATACTTCTGCTCATCAAATG+GGG | 0.665706 | 4_4:+60187831 | Msa0691870:CDS |
| GGATGATGATGAATCAAGCA+AGG | 0.668966 | 4_4:+60184517 | Msa0691870:CDS |
| AAAGAGAAAAGATTGTGCAG+AGG | 0.669869 | 4_4:+60185656 | Msa0691870:CDS |
| CATACATACATACCTCGTCA+GGG | 0.683001 | 4_4:-60184583 | None:intergenic |
| GAGTGTCATCCATTGTTGAG+GGG | 0.685569 | 4_4:+60184398 | Msa0691870:CDS |
| TAACAGGATGCAAAGCTGAG+AGG | 0.688213 | 4_4:+60186657 | Msa0691870:CDS |
| CATCCCGTGCTAATGACATG+GGG | 0.693536 | 4_4:+60186887 | Msa0691870:CDS |
| AGGTGGACAAGTAACAACAG+AGG | 0.733762 | 4_4:+60187577 | Msa0691870:CDS |
| ATGTGCCAAGAAATTCACCA+GGG | 0.759136 | 4_4:+60186531 | Msa0691870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTATAAACA+TGG | + | chr4_4:60186982-60187001 | Msa0691870:intron | 10.0% |
| !!! | AAGTGTTTTTTCTAAATATT+TGG | - | chr4_4:60185136-60185155 | None:intergenic | 15.0% |
| !! | ATAATTAATCATTATTGAGT+TGG | + | chr4_4:60185187-60185206 | Msa0691870:intron | 15.0% |
| !! | TAATTAATCATTATTGAGTT+GGG | + | chr4_4:60185188-60185207 | Msa0691870:intron | 15.0% |
| !! | TGTCATAAAGTTTATAAATT+TGG | + | chr4_4:60185221-60185240 | Msa0691870:intron | 15.0% |
| !!! | ATCATGTTATAAATTTTGAA+TGG | + | chr4_4:60185461-60185480 | Msa0691870:intron | 15.0% |
| !! | AAAATCAAGTATTAAGAAAA+GGG | + | chr4_4:60186480-60186499 | Msa0691870:CDS | 15.0% |
| !!! | TTTTTTTATAAACATGGTAT+TGG | + | chr4_4:60186988-60187007 | Msa0691870:intron | 15.0% |
| !!! | ATAATTTTTTTTTTCTTCCT+AGG | + | chr4_4:60187294-60187313 | Msa0691870:intron | 15.0% |
| !!! | TATAAATTTTATGTATGAGA+TGG | + | chr4_4:60188243-60188262 | Msa0691870:three_prime_UTR | 15.0% |
| !! | TTATAAACTTTATGACAACT+TGG | - | chr4_4:60185218-60185237 | None:intergenic | 20.0% |
| !!! | ATTTTCCAACCTTATTTTTA+AGG | + | chr4_4:60185329-60185348 | Msa0691870:intron | 20.0% |
| !! | ATTCCAATACCTTAAAAATA+AGG | - | chr4_4:60185341-60185360 | None:intergenic | 20.0% |
| !!! | TATTGATTAGAGTGATTTTA+TGG | + | chr4_4:60185533-60185552 | Msa0691870:CDS | 20.0% |
| !!! | GTTTAATTTTGATGAATTGT+TGG | - | chr4_4:60185807-60185826 | None:intergenic | 20.0% |
| !!! | TTCTATAATTCCTTTTTCAA+GGG | - | chr4_4:60185970-60185989 | None:intergenic | 20.0% |
| !!! | TTTCTATAATTCCTTTTTCA+AGG | - | chr4_4:60185971-60185990 | None:intergenic | 20.0% |
| !!! | TGATTCAAGAATACTTATTT+TGG | + | chr4_4:60186268-60186287 | Msa0691870:CDS | 20.0% |
| !!! | CTTTTCTTAATACTTGATTT+TGG | - | chr4_4:60186481-60186500 | None:intergenic | 20.0% |
| !! | CAAAATCAAGTATTAAGAAA+AGG | + | chr4_4:60186479-60186498 | Msa0691870:CDS | 20.0% |
| !! | TTTGAAAATAGTTACAAGAA+TGG | + | chr4_4:60186686-60186705 | Msa0691870:CDS | 20.0% |
| !! | GGTTTAAAGAATAAAAACAT+TGG | + | chr4_4:60186848-60186867 | Msa0691870:CDS | 20.0% |
| !! | TTGATTGAATAGTAATCATA+GGG | - | chr4_4:60187976-60187995 | None:intergenic | 20.0% |
| !! | CATGAAAATTAACAATCTTA+TGG | - | chr4_4:60188052-60188071 | None:intergenic | 20.0% |
| !!! | CATAAGATTGTTAATTTTCA+TGG | + | chr4_4:60188050-60188069 | Msa0691870:exon | 20.0% |
| !!! | AATTTTATTACAGCTGTATA+AGG | - | chr4_4:60188106-60188125 | None:intergenic | 20.0% |
| !! | AATAAAAGATCACCAAATTA+TGG | + | chr4_4:60188164-60188183 | Msa0691870:three_prime_UTR | 20.0% |
| ! | GTATGTATGTATGTATTCAT+CGG | + | chr4_4:60184597-60184616 | Msa0691870:intron | 25.0% |
| ! | ACATATTGGAACATAAATGT+GGG | - | chr4_4:60184730-60184749 | None:intergenic | 25.0% |
| ! | AACATATTGGAACATAAATG+TGG | - | chr4_4:60184731-60184750 | None:intergenic | 25.0% |
| !!! | CGTGTTTAACTATTTTTGTT+AGG | - | chr4_4:60184830-60184849 | None:intergenic | 25.0% |
| !!! | TTTTAGGTGCATATTTTGTT+AGG | + | chr4_4:60184884-60184903 | Msa0691870:intron | 25.0% |
| !!! | TGTAACACATAAGTTTTTTG+TGG | + | chr4_4:60184919-60184938 | Msa0691870:intron | 25.0% |
| ! | AAATAAGGTTGGAAAATGAT+TGG | - | chr4_4:60185326-60185345 | None:intergenic | 25.0% |
| ! | CAATACCTTAAAAATAAGGT+TGG | - | chr4_4:60185337-60185356 | None:intergenic | 25.0% |
| !!! | CAACCTTATTTTTAAGGTAT+TGG | + | chr4_4:60185335-60185354 | Msa0691870:intron | 25.0% |
| !! | TATAAATTTTGAATGGCAAC+AGG | + | chr4_4:60185468-60185487 | Msa0691870:intron | 25.0% |
| ! | TAAACGAATGCAATTCTAAA+AGG | - | chr4_4:60185706-60185725 | None:intergenic | 25.0% |
| !! | GTGTAAATTCTTTTATAGCA+AGG | - | chr4_4:60185785-60185804 | None:intergenic | 25.0% |
| ! | TATACCAATACTTAAGAAAG+TGG | + | chr4_4:60185839-60185858 | Msa0691870:intron | 25.0% |
| !!! | ATTTTGTAGGTTGATGAAAA+TGG | + | chr4_4:60185864-60185883 | Msa0691870:intron | 25.0% |
| !!! | TCTATAATTCCTTTTTCAAG+GGG | - | chr4_4:60185969-60185988 | None:intergenic | 25.0% |
| ! | TTCTAGTGATGAATAATCTT+CGG | - | chr4_4:60186198-60186217 | None:intergenic | 25.0% |
| ! | AATGAAAATTGTACACAAGA+AGG | + | chr4_4:60186452-60186471 | Msa0691870:CDS | 25.0% |
| ! | AACAGAAAGAAGAAATGTTT+GGG | + | chr4_4:60186713-60186732 | Msa0691870:CDS | 25.0% |
| ! | TTCAATTATTGCTCTTGTAT+CGG | - | chr4_4:60187432-60187451 | None:intergenic | 25.0% |
| ! | ATAATTGAAACACCATTACT+AGG | + | chr4_4:60187443-60187462 | Msa0691870:CDS | 25.0% |
| ! | TATAGATAGTGTTTATCCAA+TGG | + | chr4_4:60187772-60187791 | Msa0691870:CDS | 25.0% |
| ! | GTTGATTGAATAGTAATCAT+AGG | - | chr4_4:60187977-60187996 | None:intergenic | 25.0% |
| !! | CTGCATTTTGTATTTCAAAT+AGG | + | chr4_4:60187996-60188015 | Msa0691870:CDS | 25.0% |
| !! | AATAGGATTGTAGATTTTCT+TGG | + | chr4_4:60188013-60188032 | Msa0691870:CDS | 25.0% |
| !! | ATTGTAGATTTTCTTGGAAA+GGG | + | chr4_4:60188019-60188038 | Msa0691870:CDS | 25.0% |
| ! | ATACAAACATGGATTTTCTG+TGG | + | chr4_4:60184439-60184458 | Msa0691870:CDS | 30.0% |
| !! | GCTATATTTGTTTTCAGTCA+AGG | + | chr4_4:60184772-60184791 | Msa0691870:intron | 30.0% |
| !!! | AACACATAAGTTTTTTGTGG+TGG | + | chr4_4:60184922-60184941 | Msa0691870:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr4_4:60184967-60184986 | None:intergenic | 30.0% | |
| ATGTCCACTTTCTTAAGTAT+TGG | - | chr4_4:60185846-60185865 | None:intergenic | 30.0% | |
| ! | TAAGAAAGTGGACATTTTGT+AGG | + | chr4_4:60185851-60185870 | Msa0691870:intron | 30.0% |
| TGTTGATACTTCATATCCAA+TGG | - | chr4_4:60185910-60185929 | None:intergenic | 30.0% | |
| CAACAATCTCTATCTAACAA+AGG | + | chr4_4:60186017-60186036 | Msa0691870:CDS | 30.0% | |
| TCTAGTGATGAATAATCTTC+GGG | - | chr4_4:60186197-60186216 | None:intergenic | 30.0% | |
| GAAGATTATTCATCACTAGA+AGG | + | chr4_4:60186197-60186216 | Msa0691870:CDS | 30.0% | |
| ATGGACCAACAATATGAAAA+TGG | + | chr4_4:60186227-60186246 | Msa0691870:CDS | 30.0% | |
| ACCAACAATATGAAAATGGA+GGG | + | chr4_4:60186231-60186250 | Msa0691870:CDS | 30.0% | |
| TTCTTGAATCAATAGAAGCT+AGG | - | chr4_4:60186259-60186278 | None:intergenic | 30.0% | |
| !!! | TCAAGAATACTTATTTTGGC+AGG | + | chr4_4:60186272-60186291 | Msa0691870:CDS | 30.0% |
| TTGCATTAAAACACCAGAAA+AGG | + | chr4_4:60186334-60186353 | Msa0691870:CDS | 30.0% | |
| AATCATTATTGTGGTTCATG+TGG | + | chr4_4:60186554-60186573 | Msa0691870:CDS | 30.0% | |
| CAACAGAAAGAAGAAATGTT+TGG | + | chr4_4:60186712-60186731 | Msa0691870:CDS | 30.0% | |
| TTGGCAAAGACTTTAAATAG+TGG | + | chr4_4:60186740-60186759 | Msa0691870:CDS | 30.0% | |
| AAACCACTAGAAATCATCAA+TGG | - | chr4_4:60186833-60186852 | None:intergenic | 30.0% | |
| !!! | TTGAGATCTGATTTTGATTC+TGG | - | chr4_4:60186920-60186939 | None:intergenic | 30.0% |
| GAATCAAAATCAGATCTCAA+AGG | + | chr4_4:60186920-60186939 | Msa0691870:CDS | 30.0% | |
| !! | GAATCATCATTTGATGATGA+TGG | - | chr4_4:60187404-60187423 | None:intergenic | 30.0% |
| ! | TATAGTGCTGAATATGATGA+TGG | - | chr4_4:60187470-60187489 | None:intergenic | 30.0% |
| ATATTCAGCACTATATCCAT+GGG | + | chr4_4:60187475-60187494 | Msa0691870:CDS | 30.0% | |
| ACAATAATAAGAGACAAAGC+AGG | + | chr4_4:60187557-60187576 | Msa0691870:CDS | 30.0% | |
| CGATTGAATTCAATTTGTAG+CGG | - | chr4_4:60187610-60187629 | None:intergenic | 30.0% | |
| TATACTTCTGCTCATCAAAT+GGG | + | chr4_4:60187830-60187849 | Msa0691870:CDS | 30.0% | |
| ! | GATTGTAGATTTTCTTGGAA+AGG | + | chr4_4:60188018-60188037 | Msa0691870:CDS | 30.0% |
| GAGTTCACATTACCATAATT+TGG | - | chr4_4:60188179-60188198 | None:intergenic | 30.0% | |
| ATCTTTCTTTCCTTCTGTGT+GGG | - | chr4_4:60184371-60184390 | None:intergenic | 35.0% | |
| AGAAGGAAAGAAAGATGAGA+AGG | + | chr4_4:60184375-60184394 | Msa0691870:exon | 35.0% | |
| GAAGGAAAGAAAGATGAGAA+GGG | + | chr4_4:60184376-60184395 | Msa0691870:exon | 35.0% | |
| GAGAATCGCAAATACAAACA+TGG | + | chr4_4:60184428-60184447 | Msa0691870:CDS | 35.0% | |
| CTTGATTCATCATCATCCAT+TGG | - | chr4_4:60184515-60184534 | None:intergenic | 35.0% | |
| TTCCATTCAGGAACTTCTTT+CGG | - | chr4_4:60184675-60184694 | None:intergenic | 35.0% | |
| ! | GCGAGCTAATCTATAGTTTT+AGG | + | chr4_4:60184868-60184887 | Msa0691870:intron | 35.0% |
| !!! | CATAAGTTTTTTGTGGTGGT+CGG | + | chr4_4:60184926-60184945 | Msa0691870:intron | 35.0% |
| !!! | ATAAGTTTTTTGTGGTGGTC+GGG | + | chr4_4:60184927-60184946 | Msa0691870:intron | 35.0% |
| CATAAAATATGCAAGGTCTG+AGG | - | chr4_4:60184960-60184979 | None:intergenic | 35.0% | |
| ! | AGTTCAGCTAAAAGGTTTTC+TGG | - | chr4_4:60185368-60185387 | None:intergenic | 35.0% |
| ! | GTTGTTCAAGTTCAGCTAAA+AGG | - | chr4_4:60185376-60185395 | None:intergenic | 35.0% |
| CTTGAGAAGTTGCTGATAAA+GGG | - | chr4_4:60185622-60185641 | None:intergenic | 35.0% | |
| AAAGAGAAAAGATTGTGCAG+AGG | + | chr4_4:60185656-60185675 | Msa0691870:CDS | 35.0% | |
| AAGAGAAAAGATTGTGCAGA+GGG | + | chr4_4:60185657-60185676 | Msa0691870:CDS | 35.0% | |
| ! | AGAAGAAAACAAAGAGGCAT+AGG | - | chr4_4:60185738-60185757 | None:intergenic | 35.0% |
| !!! | CCTCTTTGTTTTCTTCTCTT+GGG | + | chr4_4:60185741-60185760 | Msa0691870:CDS | 35.0% |
| AAAATGGTGATAATCCAGCA+TGG | + | chr4_4:60185880-60185899 | Msa0691870:CDS | 35.0% | |
| !!! | TTTTTCAAGGGGTCTCTTTT+TGG | - | chr4_4:60185958-60185977 | None:intergenic | 35.0% |
| AAAAAGAGACCCCTTGAAAA+AGG | + | chr4_4:60185957-60185976 | Msa0691870:CDS | 35.0% | |
| !!! | GATTTTGAGGATGTTGCTTT+TGG | - | chr4_4:60186063-60186082 | None:intergenic | 35.0% |
| CCTCAAAATCAAATGTGATG+CGG | + | chr4_4:60186073-60186092 | Msa0691870:CDS | 35.0% | |
| AAATGTGATGCGGTAATTGT+TGG | + | chr4_4:60186083-60186102 | Msa0691870:CDS | 35.0% | |
| !! | AAAGTGGTTGTTCTAGAGAA+AGG | + | chr4_4:60186158-60186177 | Msa0691870:CDS | 35.0% |
| TCATATTGTTGGTCCATTGA+AGG | - | chr4_4:60186224-60186243 | None:intergenic | 35.0% | |
| GACCAACAATATGAAAATGG+AGG | + | chr4_4:60186230-60186249 | Msa0691870:CDS | 35.0% | |
| ! | TCCCTCCATTTTCATATTGT+TGG | - | chr4_4:60186235-60186254 | None:intergenic | 35.0% |
| ! | CATTCTTTCAACACCTTTTC+TGG | - | chr4_4:60186350-60186369 | None:intergenic | 35.0% |
| !! | CAGAAAAGGTGTTGAAAGAA+TGG | + | chr4_4:60186348-60186367 | Msa0691870:CDS | 35.0% |
| ! | CATAGAGTATCTATCTGCTA+TGG | + | chr4_4:60186403-60186422 | Msa0691870:CDS | 35.0% |
| !! | AGAAAAGGGTGTCAAAATCT+TGG | + | chr4_4:60186494-60186513 | Msa0691870:CDS | 35.0% |
| TATTGTGGTTCATGTGGTTA+TGG | + | chr4_4:60186560-60186579 | Msa0691870:CDS | 35.0% | |
| CTTGTAGATGCTGTTGAAAA+AGG | + | chr4_4:60186623-60186642 | Msa0691870:CDS | 35.0% | |
| !! | AAAGGTGCTGTGATAATAAC+AGG | + | chr4_4:60186641-60186660 | Msa0691870:CDS | 35.0% |
| ! | GAAGAAATGTTTGGGAGTTT+TGG | + | chr4_4:60186721-60186740 | Msa0691870:CDS | 35.0% |
| GCAAAAGTAACAATTTCAGC+AGG | + | chr4_4:60186788-60186807 | Msa0691870:CDS | 35.0% | |
| AAAGTAACAATTTCAGCAGG+TGG | + | chr4_4:60186791-60186810 | Msa0691870:CDS | 35.0% | |
| GAGACCAGACACTAATTATT+GGG | - | chr4_4:60187035-60187054 | None:intergenic | 35.0% | |
| AATCCAGTAAACAATGTCTC+AGG | - | chr4_4:60187070-60187089 | None:intergenic | 35.0% | |
| CATGTATCGCTAAATCATGT+AGG | + | chr4_4:60187208-60187227 | Msa0691870:intron | 35.0% | |
| !! | TTGATGATGATGGTACTCTA+TGG | - | chr4_4:60187394-60187413 | None:intergenic | 35.0% |
| !! | TATGATGATGGTCCTAGTAA+TGG | - | chr4_4:60187458-60187477 | None:intergenic | 35.0% |
| CATATTCAGCACTATATCCA+TGG | + | chr4_4:60187474-60187493 | Msa0691870:CDS | 35.0% | |
| ATAATAAGAGACAAAGCAGG+TGG | + | chr4_4:60187560-60187579 | Msa0691870:CDS | 35.0% | |
| TAATGAGAACACTAGCGAAA+AGG | + | chr4_4:60187736-60187755 | Msa0691870:CDS | 35.0% | |
| GATAGTGTTTATCCAATGGA+AGG | + | chr4_4:60187776-60187795 | Msa0691870:CDS | 35.0% | |
| TACAAATTCCAATTCTCACC+TGG | - | chr4_4:60187812-60187831 | None:intergenic | 35.0% | |
| GTATACTTCTGCTCATCAAA+TGG | + | chr4_4:60187829-60187848 | Msa0691870:CDS | 35.0% | |
| ATACTTCTGCTCATCAAATG+GGG | + | chr4_4:60187831-60187850 | Msa0691870:CDS | 35.0% | |
| ATGGGAGTGAATGAAAAAGA+AGG | + | chr4_4:60187863-60187882 | Msa0691870:CDS | 35.0% | |
| TTGATGAAAATGGTGAGAGT+TGG | + | chr4_4:60187891-60187910 | Msa0691870:CDS | 35.0% | |
| TGATGAAAATGGTGAGAGTT+GGG | + | chr4_4:60187892-60187911 | Msa0691870:CDS | 35.0% | |
| TCTTTCTTTCCTTCTGTGTG+GGG | - | chr4_4:60184370-60184389 | None:intergenic | 40.0% | |
| CATCTTTCTTTCCTTCTGTG+TGG | - | chr4_4:60184372-60184391 | None:intergenic | 40.0% | |
| TATGTTTCCTTCACTGCCAA+TGG | + | chr4_4:60184496-60184515 | Msa0691870:CDS | 40.0% | |
| ! | GGATGATGATGAATCAAGCA+AGG | + | chr4_4:60184517-60184536 | Msa0691870:CDS | 40.0% |
| CATACATACATACCTCGTCA+GGG | - | chr4_4:60184586-60184605 | None:intergenic | 40.0% | |
| ACATACATACATACCTCGTC+AGG | - | chr4_4:60184587-60184606 | None:intergenic | 40.0% | |
| ATCCGAAAGAAGTTCCTGAA+TGG | + | chr4_4:60184670-60184689 | Msa0691870:intron | 40.0% | |
| AAGTTCCTGAATGGAATGCA+AGG | + | chr4_4:60184679-60184698 | Msa0691870:intron | 40.0% | |
| AGCAGCTACGTGTAACATAT+TGG | - | chr4_4:60184744-60184763 | None:intergenic | 40.0% | |
| !!! | TGTTTTCAGTCAAGGTACTG+AGG | + | chr4_4:60184780-60184799 | Msa0691870:intron | 40.0% |
| !!! | TAAGTTTTTTGTGGTGGTCG+GGG | + | chr4_4:60184928-60184947 | Msa0691870:intron | 40.0% |
| TTGCTGAGATGTTAGCAAAG+AGG | + | chr4_4:60185491-60185510 | Msa0691870:CDS | 40.0% | |
| TGCTGAGATGTTAGCAAAGA+GGG | + | chr4_4:60185492-60185511 | Msa0691870:CDS | 40.0% | |
| ! | TTTTATGGCTTCTAGCAACG+AGG | + | chr4_4:60185548-60185567 | Msa0691870:CDS | 40.0% |
| ! | TTGGGCACTTTCTTGATTTG+TGG | + | chr4_4:60185571-60185590 | Msa0691870:CDS | 40.0% |
| TGCTATGCCTCAGTAAGAAA+TGG | + | chr4_4:60185596-60185615 | Msa0691870:CDS | 40.0% | |
| TAAAGGGCCATTTCTTACTG+AGG | - | chr4_4:60185606-60185625 | None:intergenic | 40.0% | |
| GCTTGAGAAGTTGCTGATAA+AGG | - | chr4_4:60185623-60185642 | None:intergenic | 40.0% | |
| CAACTTCTCAAGCTTGTCTT+TGG | + | chr4_4:60185630-60185649 | Msa0691870:CDS | 40.0% | |
| !!! | GCCTCTTTGTTTTCTTCTCT+TGG | + | chr4_4:60185740-60185759 | Msa0691870:CDS | 40.0% |
| CCCAAGAGAAGAAAACAAAG+AGG | - | chr4_4:60185744-60185763 | None:intergenic | 40.0% | |
| AGTTGTGTCATGTTCATGCA+TGG | - | chr4_4:60185994-60186013 | None:intergenic | 40.0% | |
| !! | CCGCATCACATTTGATTTTG+AGG | - | chr4_4:60186076-60186095 | None:intergenic | 40.0% |
| GCTTCTGTACTATCAAAAGC+TGG | + | chr4_4:60186131-60186150 | Msa0691870:CDS | 40.0% | |
| ATCAAAAGCTGGCTACAAAG+TGG | + | chr4_4:60186142-60186161 | Msa0691870:CDS | 40.0% | |
| ATCACTAGAAGGTCCTTCAA+TGG | + | chr4_4:60186208-60186227 | Msa0691870:CDS | 40.0% | |
| !! | ATTTTGGCAGGTTCAACAGT+AGG | + | chr4_4:60186284-60186303 | Msa0691870:CDS | 40.0% |
| TATGTGCCAAGAAATTCACC+AGG | + | chr4_4:60186530-60186549 | Msa0691870:CDS | 40.0% | |
| ATGTGCCAAGAAATTCACCA+GGG | + | chr4_4:60186531-60186550 | Msa0691870:CDS | 40.0% | |
| TGATTCCCTGGTGAATTTCT+TGG | - | chr4_4:60186539-60186558 | None:intergenic | 40.0% | |
| TCACCAGGGAATCATTATTG+TGG | + | chr4_4:60186545-60186564 | Msa0691870:CDS | 40.0% | |
| GAACCACAATAATGATTCCC+TGG | - | chr4_4:60186551-60186570 | None:intergenic | 40.0% | |
| TGTGGTTATGGTTGTCCAAA+AGG | + | chr4_4:60186572-60186591 | Msa0691870:CDS | 40.0% | |
| TGTCCAAAAGGAGAGAAACA+AGG | + | chr4_4:60186584-60186603 | Msa0691870:CDS | 40.0% | |
| GTCCAAAAGGAGAGAAACAA+GGG | + | chr4_4:60186585-60186604 | Msa0691870:CDS | 40.0% | |
| AACAAGGGACTCAAGTTACA+TGG | + | chr4_4:60186600-60186619 | Msa0691870:CDS | 40.0% | |
| CCACTAGAAATCATCAATGG+AGG | - | chr4_4:60186830-60186849 | None:intergenic | 40.0% | |
| ! | CCTCCATTGATGATTTCTAG+TGG | + | chr4_4:60186827-60186846 | Msa0691870:CDS | 40.0% |
| CTCTCCCAATAATTAGTGTC+TGG | + | chr4_4:60187028-60187047 | Msa0691870:intron | 40.0% | |
| GGAGACCAGACACTAATTAT+TGG | - | chr4_4:60187036-60187055 | None:intergenic | 40.0% | |
| TAAACAATGTCTCAGGTTCG+AGG | - | chr4_4:60187063-60187082 | None:intergenic | 40.0% | |
| GAACCTGAGACATTGTTTAC+TGG | + | chr4_4:60187064-60187083 | Msa0691870:intron | 40.0% | |
| TAGATGAAGATTCAGCTCCT+AGG | - | chr4_4:60187314-60187333 | None:intergenic | 40.0% | |
| CTTTACCTGTTAGGAATCAC+AGG | - | chr4_4:60187343-60187362 | None:intergenic | 40.0% | |
| CTAACAGGTAAAGCGAATGA+GGG | + | chr4_4:60187350-60187369 | Msa0691870:intron | 40.0% | |
| ! | GTTATGAAGTGTGCTGTTCT+TGG | - | chr4_4:60187539-60187558 | None:intergenic | 40.0% |
| GACAAAGAGAATATGAGAGC+TGG | + | chr4_4:60187629-60187648 | Msa0691870:CDS | 40.0% | |
| CTGAGAATTCTAATAGCAGC+AGG | + | chr4_4:60187665-60187684 | Msa0691870:CDS | 40.0% | |
| CATTGTTACCAGGTGAGAAT+TGG | + | chr4_4:60187801-60187820 | Msa0691870:CDS | 40.0% | |
| TCAAATGGGGAGTTGTAGAA+TGG | + | chr4_4:60187844-60187863 | Msa0691870:CDS | 40.0% | |
| CAAATGGGGAGTTGTAGAAT+GGG | + | chr4_4:60187845-60187864 | Msa0691870:CDS | 40.0% | |
| !! | GAAGGTGCTGTTGATGAAAA+TGG | + | chr4_4:60187881-60187900 | Msa0691870:CDS | 40.0% |
| CTTTCTTTCCTTCTGTGTGG+GGG | - | chr4_4:60184369-60184388 | None:intergenic | 45.0% | |
| ! | GGAGTGTCATCCATTGTTGA+GGG | + | chr4_4:60184397-60184416 | Msa0691870:CDS | 45.0% |
| GAGTGTCATCCATTGTTGAG+GGG | + | chr4_4:60184398-60184417 | Msa0691870:CDS | 45.0% | |
| ATCGCTCACAAGCATATGTG+AGG | + | chr4_4:60184472-60184491 | Msa0691870:CDS | 45.0% | |
| TCATCATCCATTGGCAGTGA+AGG | - | chr4_4:60184506-60184525 | None:intergenic | 45.0% | |
| CTCGTCAGGGATTGGATATT+TGG | - | chr4_4:60184573-60184592 | None:intergenic | 45.0% | |
| CAAATATCCAATCCCTGACG+AGG | + | chr4_4:60184571-60184590 | Msa0691870:CDS | 45.0% | |
| ATACATACCTCGTCAGGGAT+TGG | - | chr4_4:60184581-60184600 | None:intergenic | 45.0% | |
| ACTTCTTTCGGATCGATCGA+GGG | - | chr4_4:60184663-60184682 | None:intergenic | 45.0% | |
| AACTTCTTTCGGATCGATCG+AGG | - | chr4_4:60184664-60184683 | None:intergenic | 45.0% | |
| CTGTTCCTTGCATTCCATTC+AGG | - | chr4_4:60184687-60184706 | None:intergenic | 45.0% | |
| TAGCTCGCTATCAAGATCAG+TGG | - | chr4_4:60184856-60184875 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr4_4:60184989-60185008 | None:intergenic | 45.0% |
| AATCCAGCATGGAAAGCCAT+TGG | + | chr4_4:60185891-60185910 | Msa0691870:CDS | 45.0% | |
| TATCCAATGGCTTTCCATGC+TGG | - | chr4_4:60185897-60185916 | None:intergenic | 45.0% | |
| !!! | GGGTCTCTTTTTGGTGTCAT+TGG | - | chr4_4:60185949-60185968 | None:intergenic | 45.0% |
| TGGAGTCTAGTGTGACATTG+AGG | - | chr4_4:60186043-60186062 | None:intergenic | 45.0% | |
| GATGCGGTAATTGTTGGATC+TGG | + | chr4_4:60186089-60186108 | Msa0691870:CDS | 45.0% | |
| GTAATTGTTGGATCTGGCTG+TGG | + | chr4_4:60186095-60186114 | Msa0691870:CDS | 45.0% | |
| GTGGTGGTTCAGCTGTTAAT+TGG | + | chr4_4:60186306-60186325 | Msa0691870:CDS | 45.0% | |
| ! | GGTGTTGAAAGAATGGTCAG+AGG | + | chr4_4:60186355-60186374 | Msa0691870:CDS | 45.0% |
| CTATGGAAACTGTGTGTGAG+AGG | + | chr4_4:60186420-60186439 | Msa0691870:CDS | 45.0% | |
| GAAACTGTGTGTGAGAGGAT+TGG | + | chr4_4:60186425-60186444 | Msa0691870:CDS | 45.0% | |
| !! | GTCCCTTGTTTCTCTCCTTT+TGG | - | chr4_4:60186590-60186609 | None:intergenic | 45.0% |
| TAACAGGATGCAAAGCTGAG+AGG | + | chr4_4:60186657-60186676 | Msa0691870:CDS | 45.0% | |
| TTAGCACGGGATGAAGATGA+AGG | - | chr4_4:60186880-60186899 | None:intergenic | 45.0% | |
| TTCATCCCGTGCTAATGACA+TGG | + | chr4_4:60186885-60186904 | Msa0691870:CDS | 45.0% | |
| TCATCCCGTGCTAATGACAT+GGG | + | chr4_4:60186886-60186905 | Msa0691870:CDS | 45.0% | |
| TATCCCCATGTCATTAGCAC+GGG | - | chr4_4:60186893-60186912 | None:intergenic | 45.0% | |
| GTATCCCCATGTCATTAGCA+CGG | - | chr4_4:60186894-60186913 | None:intergenic | 45.0% | |
| TCGATCCTGTGATTCCTAAC+AGG | + | chr4_4:60187335-60187354 | Msa0691870:intron | 45.0% | |
| CCTCATTCGCTTTACCTGTT+AGG | - | chr4_4:60187352-60187371 | None:intergenic | 45.0% | |
| CCTAACAGGTAAAGCGAATG+AGG | + | chr4_4:60187349-60187368 | Msa0691870:intron | 45.0% | |
| GCACTATATCCATGGGAATC+AGG | + | chr4_4:60187482-60187501 | Msa0691870:CDS | 45.0% | |
| TAGTCTAGTCCTGATTCCCA+TGG | - | chr4_4:60187494-60187513 | None:intergenic | 45.0% | |
| AGGTGGACAAGTAACAACAG+AGG | + | chr4_4:60187577-60187596 | Msa0691870:CDS | 45.0% | |
| GGTGGACAAGTAACAACAGA+GGG | + | chr4_4:60187578-60187597 | Msa0691870:CDS | 45.0% | |
| GAAGTAGGAACACACAGAAG+TGG | + | chr4_4:60187695-60187714 | Msa0691870:CDS | 45.0% | |
| GGTAACAATGCTCCTTCCAT+TGG | - | chr4_4:60187791-60187810 | None:intergenic | 45.0% | |
| !! | ATGGAAGGAGCATTGTTACC+AGG | + | chr4_4:60187791-60187810 | Msa0691870:CDS | 45.0% |
| GAAAAACTCCCCCACACAGA+AGG | + | chr4_4:60184358-60184377 | Msa0691870:five_prime_UTR | 50.0% | |
| !! | GGGAGTGTCATCCATTGTTG+AGG | + | chr4_4:60184396-60184415 | Msa0691870:CDS | 50.0% |
| TCTCTCACACCCCTCAACAA+TGG | - | chr4_4:60184410-60184429 | None:intergenic | 50.0% | |
| AGGAACAGCTTCGATGTGCA+TGG | + | chr4_4:60184699-60184718 | Msa0691870:intron | 50.0% | |
| AACAGCTTCGATGTGCATGG+TGG | + | chr4_4:60184702-60184721 | Msa0691870:intron | 50.0% | |
| ACAGCTTCGATGTGCATGGT+GGG | + | chr4_4:60184703-60184722 | Msa0691870:intron | 50.0% | |
| ATGGCTTCTAGCAACGAGGT+TGG | + | chr4_4:60185552-60185571 | Msa0691870:CDS | 50.0% | |
| TGGCTTCTAGCAACGAGGTT+GGG | + | chr4_4:60185553-60185572 | Msa0691870:CDS | 50.0% | |
| ATTGTTGGATCTGGCTGTGG+AGG | + | chr4_4:60186098-60186117 | Msa0691870:CDS | 50.0% | |
| TTGGCAGGTTCAACAGTAGG+TGG | + | chr4_4:60186287-60186306 | Msa0691870:CDS | 50.0% | |
| CATCCCGTGCTAATGACATG+GGG | + | chr4_4:60186887-60186906 | Msa0691870:CDS | 50.0% | |
| TGATTACGCGCTGTTACGAG+TGG | - | chr4_4:60187104-60187123 | None:intergenic | 50.0% | |
| ACAGGTAAAGCGAATGAGGG+AGG | + | chr4_4:60187353-60187372 | Msa0691870:intron | 50.0% | |
| GTAGGAACACACAGAAGTGG+TGG | + | chr4_4:60187698-60187717 | Msa0691870:CDS | 50.0% | |
| GTGAGAGTTGGGAAGCTGAA+GGG | + | chr4_4:60187903-60187922 | Msa0691870:CDS | 50.0% | |
| AGTGTGCTTCCAACTGCTGT+TGG | + | chr4_4:60187944-60187963 | Msa0691870:CDS | 50.0% | |
| GGGTTAACACCAACAGCAGT+TGG | - | chr4_4:60187956-60187975 | None:intergenic | 50.0% | |
| TTCGGATCGATCGAGGGAGA+GGG | - | chr4_4:60184657-60184676 | None:intergenic | 55.0% | |
| TTTCGGATCGATCGAGGGAG+AGG | - | chr4_4:60184658-60184677 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_4:60184994-60185013 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_4:60184991-60185010 | Msa0691870:intron | 55.0% | |
| GCAGGTTCAACAGTAGGTGG+TGG | + | chr4_4:60186290-60186309 | Msa0691870:CDS | 55.0% | |
| ATGTCTCAGGTTCGAGGCAG+TGG | - | chr4_4:60187057-60187076 | None:intergenic | 55.0% | |
| GCAGCAGGAGCAGTTGAAGT+AGG | + | chr4_4:60187680-60187699 | Msa0691870:CDS | 55.0% | |
| GGTGAGAGTTGGGAAGCTGA+AGG | + | chr4_4:60187902-60187921 | Msa0691870:CDS | 55.0% | |
| TCGATCGAGGGAGAGGGAGA+GGG | - | chr4_4:60184651-60184670 | None:intergenic | 60.0% | |
| ATCGATCGAGGGAGAGGGAG+AGG | - | chr4_4:60184652-60184671 | None:intergenic | 60.0% | |
| GTTGGATCTGGCTGTGGAGG+AGG | + | chr4_4:60186101-60186120 | Msa0691870:CDS | 60.0% | |
| GAGGGAGAGGGAGAGGGAGA+GGG | - | chr4_4:60184639-60184658 | None:intergenic | 65.0% | |
| CGAGGGAGAGGGAGAGGGAG+AGG | - | chr4_4:60184646-60184665 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60184357 | 60188279 | 60184357 | ID=Msa0691870;Name=Msa0691870 |
| chr4_4 | mRNA | 60184357 | 60188279 | 60184357 | ID=Msa0691870-mRNA-1;Parent=Msa0691870;Name=Msa0691870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=32|1|1|1|1|1|4|225|747 |
| chr4_4 | exon | 60184357 | 60184592 | 60184357 | ID=Msa0691870-mRNA-1:exon:16432;Parent=Msa0691870-mRNA-1 |
| chr4_4 | exon | 60185490 | 60185762 | 60185490 | ID=Msa0691870-mRNA-1:exon:16433;Parent=Msa0691870-mRNA-1 |
| chr4_4 | exon | 60185873 | 60186941 | 60185873 | ID=Msa0691870-mRNA-1:exon:16434;Parent=Msa0691870-mRNA-1 |
| chr4_4 | exon | 60187357 | 60188279 | 60187357 | ID=Msa0691870-mRNA-1:exon:16435;Parent=Msa0691870-mRNA-1 |
| chr4_4 | five_prime_UTR | 60184357 | 60184388 | 60184357 | ID=Msa0691870-mRNA-1:five_prime_utr;Parent=Msa0691870-mRNA-1 |
| chr4_4 | CDS | 60184389 | 60184592 | 60184389 | ID=Msa0691870-mRNA-1:cds;Parent=Msa0691870-mRNA-1 |
| chr4_4 | CDS | 60185490 | 60185762 | 60185490 | ID=Msa0691870-mRNA-1:cds;Parent=Msa0691870-mRNA-1 |
| chr4_4 | CDS | 60185873 | 60186941 | 60185873 | ID=Msa0691870-mRNA-1:cds;Parent=Msa0691870-mRNA-1 |
| chr4_4 | CDS | 60187357 | 60188054 | 60187357 | ID=Msa0691870-mRNA-1:cds;Parent=Msa0691870-mRNA-1 |
| chr4_4 | three_prime_UTR | 60188055 | 60188279 | 60188055 | ID=Msa0691870-mRNA-1:three_prime_utr;Parent=Msa0691870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
