AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171980 MtrunA17_Chr1g0190121 100.000 319 0 0 30 348 1 319 0.0 669
Msa0171980 MtrunA17_Chr7g0274931 92.790 319 23 0 30 348 1 319 0.0 635
Msa0171980 MtrunA17_Chr5g0436061 89.073 302 32 1 30 330 17 318 0.0 571
Msa0171980 MtrunA17_Chr1g0186811 83.013 312 53 0 30 341 1 312 0.0 568
Msa0171980 MtrunA17_Chr1g0167751 82.812 320 54 1 30 348 1 320 0.0 566
Msa0171980 MtrunA17_Chr8g0387541 79.114 316 64 2 30 344 1 315 0.0 543
Msa0171980 MtrunA17_Chr7g0272371 77.097 310 65 2 28 337 3 306 0.0 509
Msa0171980 MtrunA17_Chr8g0334361 80.623 289 56 0 35 323 4 292 2.32e-180 507
Msa0171980 MtrunA17_Chr7g0268381 45.608 296 159 2 33 327 5 299 4.98e-95 291
Msa0171980 MtrunA17_Chr8g0364041 46.488 299 151 3 32 329 4 294 6.80e-95 290
Msa0171980 MtrunA17_Chr5g0445011 47.464 276 144 1 55 329 17 292 9.56e-94 287
Msa0171980 MtrunA17_Chr8g0378521 45.608 296 152 3 35 329 9 296 9.99e-94 287
Msa0171980 MtrunA17_Chr5g0415261 45.819 299 153 3 32 329 4 294 9.02e-93 285
Msa0171980 MtrunA17_Chr1g0165341 42.652 279 157 3 54 330 15 292 2.01e-87 271
Msa0171980 MtrunA17_Chr2g0322121 47.097 310 145 8 32 323 638 946 3.02e-79 266
Msa0171980 MtrunA17_Chr4g0025471 46.926 309 147 7 32 323 643 951 6.35e-79 266
Msa0171980 MtrunA17_Chr3g0097231 43.182 264 143 4 51 308 184 446 1.69e-68 227
Msa0171980 MtrunA17_Chr2g0330311 42.570 249 134 6 67 308 227 473 2.48e-62 212
Msa0171980 MtrunA17_Chr2g0330331 42.742 248 134 5 68 308 66 312 1.33e-59 200
Msa0171980 MtrunA17_Chr1g0196211 49.444 180 81 5 137 307 2 180 1.53e-50 173
Msa0171980 MtrunA17_Chr8g0369981 30.909 330 158 11 67 326 105 434 7.13e-36 139
Msa0171980 MtrunA17_Chr1g0196221 46.491 114 52 2 32 136 522 635 1.35e-22 101
Msa0171980 MtrunA17_Chr2g0330011 36.134 119 66 4 60 169 232 349 6.34e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171980 AT2G39840.1 89.073 302 32 1 30 330 14 315 0.0 573
Msa0171980 AT5G59160.3 84.244 311 47 2 22 330 1 311 0.0 555
Msa0171980 AT5G59160.2 84.244 311 47 2 22 330 1 311 0.0 555
Msa0171980 AT5G59160.1 84.244 311 47 2 22 330 1 311 0.0 555
Msa0171980 AT2G29400.1 83.013 312 49 3 20 328 5 315 0.0 552
Msa0171980 AT3G46820.1 81.350 311 56 1 22 330 1 311 0.0 544
Msa0171980 AT1G64040.1 79.114 316 64 2 30 344 1 315 0.0 538
Msa0171980 AT5G43380.2 76.205 332 73 1 30 361 1 326 0.0 535
Msa0171980 AT5G43380.1 79.355 310 64 0 30 339 1 310 0.0 531
Msa0171980 AT5G43380.3 77.570 321 72 0 30 350 1 321 0.0 530
Msa0171980 AT4G11240.1 76.266 316 73 2 30 344 1 315 0.0 523
Msa0171980 AT5G27840.1 78.548 303 63 1 22 324 1 301 0.0 511
Msa0171980 AT5G27840.4 78.548 303 63 1 22 324 1 301 0.0 511
Msa0171980 AT5G27840.2 78.548 303 63 1 22 324 1 301 0.0 511
Msa0171980 AT5G27840.3 78.548 303 63 1 22 324 1 301 0.0 511
Msa0171980 AT3G05580.1 78.548 303 63 1 22 324 1 301 2.01e-179 506
Msa0171980 AT3G05580.2 77.953 254 54 1 22 275 1 252 1.42e-145 418
Msa0171980 AT2G42500.1 45.875 303 155 3 35 336 14 308 2.62e-97 297
Msa0171980 AT5G55260.1 47.826 276 143 1 55 329 17 292 3.20e-96 294
Msa0171980 AT3G58500.1 46.259 294 149 3 35 327 14 299 1.31e-95 292
Msa0171980 AT1G10430.2 45.946 296 151 3 35 329 7 294 8.39e-94 288
Msa0171980 AT1G10430.1 45.946 296 151 3 35 329 7 294 8.39e-94 288
Msa0171980 AT1G69960.1 45.608 296 152 3 35 329 8 295 1.79e-93 287
Msa0171980 AT4G26720.1 45.290 276 150 1 55 329 17 292 4.51e-93 286
Msa0171980 AT1G59830.1 45.270 296 153 3 35 329 7 294 4.03e-92 283
Msa0171980 AT5G55260.2 41.640 317 143 2 55 329 17 333 8.57e-88 273
Msa0171980 AT1G50370.1 41.935 279 159 3 54 330 15 292 1.85e-86 268
Msa0171980 AT3G19980.1 42.294 279 158 3 54 330 15 292 2.15e-86 268
Msa0171980 AT1G59830.2 47.791 249 121 3 35 282 7 247 2.69e-80 251
Msa0171980 AT4G03080.1 46.452 310 147 8 32 323 524 832 4.41e-80 268
Msa0171980 AT2G27210.1 48.264 288 133 6 51 323 671 957 8.13e-78 263
Msa0171980 AT2G27210.2 46.602 309 146 8 33 323 645 952 8.88e-78 263
Msa0171980 AT1G08420.1 46.602 309 146 8 33 323 661 968 4.71e-77 261
Msa0171980 AT1G08420.2 46.602 309 146 8 33 323 656 963 4.80e-77 261
Msa0171980 AT2G42500.2 49.321 221 110 2 108 327 33 252 6.36e-75 238
Msa0171980 AT1G03445.2 46.479 284 135 8 55 323 476 757 1.07e-74 251
Msa0171980 AT1G03445.1 46.479 284 135 8 55 323 476 757 1.49e-74 251
Msa0171980 AT2G42810.1 40.273 293 164 5 29 315 168 455 4.61e-67 224
Msa0171980 AT2G42810.5 40.273 293 164 5 29 315 168 455 4.61e-67 224
Msa0171980 AT2G42810.4 40.273 293 164 5 29 315 168 455 4.61e-67 224
Msa0171980 AT2G42810.2 40.273 293 164 5 29 315 222 509 6.73e-67 225
Msa0171980 AT2G42810.3 40.273 293 164 5 29 315 221 508 7.01e-67 225
Msa0171980 AT2G42500.4 44.910 167 81 4 35 197 14 173 2.18e-44 154
Msa0171980 AT2G42500.5 45.087 173 82 5 35 203 14 177 4.38e-44 154
Msa0171980 AT2G42500.3 46.541 159 74 4 35 189 14 165 7.50e-44 153
Msa0171980 AT5G63870.1 31.325 332 160 12 62 326 52 382 9.28e-34 132
Msa0171980 AT5G63870.2 31.325 332 160 12 62 326 52 382 9.28e-34 132
Msa0171980 AT5G63870.3 31.984 247 128 6 62 268 52 298 7.63e-28 113
Msa0171980 AT1G48120.1 29.897 291 144 7 67 297 635 925 1.66e-25 111
Msa0171980 AT5G10900.2 29.965 287 156 10 63 306 199 483 8.52e-23 102
Msa0171980 AT5G10900.3 29.965 287 156 10 63 306 199 483 8.67e-23 102
Msa0171980 AT5G10900.1 29.965 287 156 10 63 306 199 483 9.70e-23 102

Find 104 sgRNAs with CRISPR-Local

Find 739 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCTGACTTACATAATT+TGG 0.116324 1_4:+56823885 Msa0171980:CDS
TATCAGCTGGCTTTAATATT+TGG 0.125928 1_4:-56824559 None:intergenic
CTCACATAACTTCGGATTAT+TGG 0.154032 1_4:+56824983 Msa0171980:CDS
CTTGCAGCAACCTAATTTAT+TGG 0.157351 1_4:+56818852 Msa0171980:CDS
TCGAGATCCATATGTTATTT+TGG 0.166682 1_4:+56825455 Msa0171980:CDS
CGAAAGTATGAAGTTGATTT+TGG 0.175729 1_4:+56825393 Msa0171980:CDS
AGAAAGCAAGGAAGAGATTA+TGG 0.211559 1_4:-56825566 None:intergenic
GTCAATATTCTGATCTTCTA+AGG 0.254833 1_4:+56823557 Msa0171980:CDS
GCTTCAAGCTCCAATAAATT+AGG 0.261678 1_4:-56818862 None:intergenic
GCTTCTATTAACCGTATATA+TGG 0.271123 1_4:+56823739 Msa0171980:CDS
ACTCTGTTGGACAATCATTA+AGG 0.284049 1_4:-56815848 None:intergenic
ATGCTCATACAATTGGTATA+TGG 0.299374 1_4:+56825679 Msa0171980:three_prime_UTR
ACACCTGCTGGAGAGTTTCC+TGG 0.299462 1_4:-56824623 None:intergenic
GTTTCTTCAGAAGCATGATT+TGG 0.317593 1_4:+56824059 Msa0171980:CDS
GAAGGTTCAATGTAAGGATA+TGG 0.319884 1_4:+56823782 Msa0171980:CDS
TACAATTCCAAAATAACATA+TGG 0.326326 1_4:-56825462 None:intergenic
AAATTACCACAAATCTTAAT+AGG 0.331310 1_4:-56818886 None:intergenic
AGAGATGGAACAAGCAGTTT+TGG 0.343273 1_4:+56818723 Msa0171980:intron
TCTTATTTGCCGTGCTCATC+AGG 0.350335 1_4:+56824083 Msa0171980:CDS
TCGCAAAGCAAACCTGTATC+AGG 0.371447 1_4:-56823943 None:intergenic
CAACCTTGAACTTCTTTGCT+AGG 0.376807 1_4:-56823982 None:intergenic
TATGTGAGAAATGGTTAATA+TGG 0.377805 1_4:-56824968 None:intergenic
GCTTCCTTGCAGTCCTTCCT+TGG 0.386217 1_4:+56825368 Msa0171980:intron
TAGTCGTGCAAGAAAGCATT+TGG 0.386899 1_4:+56825028 Msa0171980:CDS
ATTGATTCATCCAATGGCTT+TGG 0.389357 1_4:-56825117 None:intergenic
GACAGCTGAACCTGCTTCCC+TGG 0.395189 1_4:-56818784 None:intergenic
GTTTGCTTTGCGATCTCCTC+TGG 0.402187 1_4:+56823953 Msa0171980:CDS
CCGACTGATGTGCCTGATAC+AGG 0.405760 1_4:+56823931 Msa0171980:CDS
CATCATAAAATCCATATATA+CGG 0.411444 1_4:-56823750 None:intergenic
GAAGCACCTATTAAGATTTG+TGG 0.413609 1_4:+56818880 Msa0171980:CDS
ATATACATTTGGTGCTGATA+AGG 0.419606 1_4:+56824029 Msa0171980:CDS
TGCTCATACAATTGGTATAT+GGG 0.419628 1_4:+56825680 Msa0171980:three_prime_UTR
GGTTAATAGAAGCACATTCA+TGG 0.425951 1_4:-56823729 None:intergenic
ATCCGAAGTTATGTGAGAAA+TGG 0.428040 1_4:-56824977 None:intergenic
GATGAAAATGCTCATACAAT+TGG 0.429020 1_4:+56825672 Msa0171980:three_prime_UTR
TCAAACTCCCCACAGTAATT+AGG 0.429403 1_4:-56824488 None:intergenic
TAGCAAAGAAGTTCAAGGTT+GGG 0.430512 1_4:+56823984 Msa0171980:CDS
CTTCCTACCTTTACACCTGC+TGG 0.435417 1_4:-56824635 None:intergenic
AACCTTGAACTTCTTTGCTA+GGG 0.443540 1_4:-56823981 None:intergenic
AGTCGTGCAAGAAAGCATTT+GGG 0.444539 1_4:+56825029 Msa0171980:CDS
GATATGAGTTCTTTGCTAAC+CGG 0.448265 1_4:+56824441 Msa0171980:CDS
AAAATGGTTGCTGTCACAAC+TGG 0.449964 1_4:+56825418 Msa0171980:CDS
CTCTGTTGGACAATCATTAA+GGG 0.454536 1_4:-56815847 None:intergenic
GAAACAATTGATTCATCCAA+TGG 0.460426 1_4:-56825123 None:intergenic
AATGAAGCACCTAGTGCAAA+AGG 0.461348 1_4:+56815789 None:intergenic
GTAAAAGAAGGTTCAATGTA+AGG 0.466323 1_4:+56823776 Msa0171980:CDS
TGATCCAAATTATGTAAGTC+AGG 0.467364 1_4:-56823889 None:intergenic
AGGGGAGTGTCATATACATT+TGG 0.476024 1_4:+56824018 Msa0171980:CDS
GAAAGCAAGGAAGAGATTAT+GGG 0.478394 1_4:-56825565 None:intergenic
CTTGAAGTTCGTAGCCGTCC+AGG 0.490260 1_4:+56818766 Msa0171980:CDS
CTGGACGGCTACGAACTTCA+AGG 0.496906 1_4:-56818765 None:intergenic
TCGTAGCCGTCCAGGGAAGC+AGG 0.501536 1_4:+56818774 Msa0171980:CDS
TTTGACCAGGTGGTGGAGGA+TGG 0.504276 1_4:+56824419 Msa0171980:intron
GACCCTAGCAAAGAAGTTCA+AGG 0.508316 1_4:+56823979 Msa0171980:CDS
AGCAAAGAAGTTCAAGGTTG+GGG 0.509636 1_4:+56823985 Msa0171980:CDS
GCAGGTTCAGCTGTCGGAGA+CGG 0.516990 1_4:+56818792 Msa0171980:CDS
TCTGAAGCAGCCAAAGCCAT+TGG 0.518464 1_4:+56825107 Msa0171980:CDS
TTGGGTGATTATGTGGATCG+AGG 0.524951 1_4:+56823625 Msa0171980:CDS
AACCATTTCTCACATAACTT+CGG 0.526041 1_4:+56824975 Msa0171980:CDS
AAGGTTGGGGAATGAATGAC+AGG 0.526085 1_4:+56823998 Msa0171980:CDS
TTTATGATGAGTGTAAAAGA+AGG 0.531875 1_4:+56823764 Msa0171980:CDS
AAAATATTGTTACAAGCTGC+CGG 0.536379 1_4:-56824460 None:intergenic
AAACTCTCCAGCAGGTGTAA+AGG 0.539592 1_4:+56824628 Msa0171980:CDS
TGGGTGATTATGTGGATCGA+GGG 0.542417 1_4:+56823626 Msa0171980:CDS
TTTCGGCGCCTAATTACTGT+GGG 0.546628 1_4:+56824480 Msa0171980:CDS
TGGGTGGAAGTTGAGAATAA+AGG 0.546776 1_4:+56825699 Msa0171980:three_prime_UTR
TCATACTTTCGTACCAAGGA+AGG 0.549840 1_4:-56825381 None:intergenic
ATTAGTGTACAAAGAAAGCA+AGG 0.554941 1_4:-56825578 None:intergenic
TGGGGCATTGAATTTAGCAA+TGG 0.556455 1_4:+56825048 Msa0171980:CDS
GCACATCAGTCGGCCTCTGT+AGG 0.567167 1_4:-56823921 None:intergenic
AGAGTTTCCTGGTTTAGTAG+TGG 0.569550 1_4:-56824612 None:intergenic
GACACTAACCACCACTCTGT+TGG 0.571108 1_4:-56815861 None:intergenic
CCTGTATCAGGCACATCAGT+CGG 0.573201 1_4:-56823931 None:intergenic
TATGTCTACGAATGCTTGAG+AGG 0.575423 1_4:-56825627 None:intergenic
TCATCAATGAGGGCTGCCAC+AGG 0.577241 1_4:-56823835 None:intergenic
GTATGGTGGATTACCTCCTC+AGG 0.580103 1_4:+56823588 Msa0171980:CDS
AAACCAGGAAACTCTCCAGC+AGG 0.580760 1_4:+56824620 Msa0171980:CDS
CTAGCAAAGAAGTTCAAGGT+TGG 0.581376 1_4:+56823983 Msa0171980:CDS
TTGAAGTTCGTAGCCGTCCA+GGG 0.585517 1_4:+56818767 Msa0171980:CDS
TTTCTTTGTACACTAATACC+TGG 0.586760 1_4:+56825584 Msa0171980:CDS
AGGGAAGCAGGTTCAGCTGT+CGG 0.588957 1_4:+56818786 Msa0171980:CDS
AACAAGTAGTTGGCCTGAGG+AGG 0.589163 1_4:-56823601 None:intergenic
TTGCTTCAATTGCCTACCTG+TGG 0.593940 1_4:+56823819 Msa0171980:CDS
AACTTCATACTTTCGTACCA+AGG 0.594854 1_4:-56825385 None:intergenic
CTGTCACAACTGGTCAGCGA+AGG 0.613026 1_4:+56825428 Msa0171980:CDS
GTTCAATGTAAGGATATGGA+AGG 0.613524 1_4:+56823786 Msa0171980:CDS
CTTTGCTAGGGTCTGACCAG+AGG 0.615007 1_4:-56823969 None:intergenic
ATGGTCTACATAGTTCATGA+TGG 0.620287 1_4:-56825501 None:intergenic
ATGATTGTCCAACAGAGTGG+TGG 0.624227 1_4:+56815853 Msa0171980:CDS
AATGGAACAAACTACATACA+TGG 0.629219 1_4:+56825066 Msa0171980:CDS
TAAAACTCAGAACATATACC+AGG 0.631683 1_4:-56825602 None:intergenic
GCTGAACCTGCTTCCCTGGA+CGG 0.632476 1_4:-56818780 None:intergenic
CAATGAGGGCTGCCACAGGT+AGG 0.639222 1_4:-56823831 None:intergenic
AGTACGACCACTACTAAACC+AGG 0.640553 1_4:+56824605 Msa0171980:CDS
AAAGTTTAACCTGATGAGCA+CGG 0.643579 1_4:-56824092 None:intergenic
TAGCAGTAGAACATAGCTGA+CGG 0.659481 1_4:-56818819 None:intergenic
GTCGTGCAAGAAAGCATTTG+GGG 0.664855 1_4:+56825030 Msa0171980:CDS
TGTGGGGAGTTTGACAACGC+TGG 0.676964 1_4:+56824497 Msa0171980:CDS
TCATACAATTGGTATATGGG+TGG 0.679238 1_4:+56825683 Msa0171980:three_prime_UTR
TTCGGCGCCTAATTACTGTG+GGG 0.690124 1_4:+56824481 Msa0171980:CDS
TTAATGATTGTCCAACAGAG+TGG 0.712982 1_4:+56815850 Msa0171980:CDS
AGGTTGGGGAATGAATGACA+GGG 0.722361 1_4:+56823999 Msa0171980:CDS
GGTTGGGGAATGAATGACAG+GGG 0.740649 1_4:+56824000 Msa0171980:CDS
ATCAGATTAGAAACCTACAG+AGG 0.757889 1_4:+56823908 Msa0171980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAATAAAAGATAAA+GGG - chr1_4:56817709-56817728 None:intergenic 10.0%
!! AACAATAAAATAAAAGATAA+AGG - chr1_4:56817710-56817729 None:intergenic 10.0%
!!! AAAGATAAGAAAAATATTTT+TGG - chr1_4:56818057-56818076 None:intergenic 10.0%
!!! AACTTTTATTTATAATTTAG+AGG + chr1_4:56818195-56818214 Msa0171980:intron 10.0%
!!! ACTTTTATTTATAATTTAGA+GGG + chr1_4:56818196-56818215 Msa0171980:intron 10.0%
!!! TTTTTTTTTTTTTTATCTTC+GGG - chr1_4:56818323-56818342 None:intergenic 10.0%
!! ATGATAATAATTGAAATTAA+GGG - chr1_4:56818637-56818656 None:intergenic 10.0%
!! TATGATAATAATTGAAATTA+AGG - chr1_4:56818638-56818657 None:intergenic 10.0%
!! AAAATCCTTTAATTAAATTA+TGG + chr1_4:56820895-56820914 Msa0171980:intron 10.0%
!! TTTATGAAATAATTATAGAA+TGG + chr1_4:56821346-56821365 Msa0171980:intron 10.0%
!! TTATGAAATAATTATAGAAT+GGG + chr1_4:56821347-56821366 Msa0171980:intron 10.0%
!!! AAGAATTTTAAAAAAAGATA+AGG - chr1_4:56822605-56822624 None:intergenic 10.0%
!!! AATTTTATCATTTCAAATAA+TGG - chr1_4:56822762-56822781 None:intergenic 10.0%
!!! TGATTATAAAATTTTAGTTT+CGG + chr1_4:56822989-56823008 Msa0171980:intron 10.0%
!!! TTTCATATTTTTTTTTTTGA+AGG - chr1_4:56823322-56823341 None:intergenic 10.0%
!! TTCAAAAAAAAAAATATGAA+AGG + chr1_4:56823321-56823340 Msa0171980:intron 10.0%
!! TAGAAAGTAATTATTAAAAT+AGG + chr1_4:56824828-56824847 Msa0171980:intron 10.0%
!! AGAAAGTAATTATTAAAATA+GGG + chr1_4:56824829-56824848 Msa0171980:intron 10.0%
!! GTAAATAAAAATATTAAACA+TGG - chr1_4:56825296-56825315 None:intergenic 10.0%
!! AATTATCCTATTAGTAAAAT+TGG - chr1_4:56816990-56817009 None:intergenic 15.0%
!! AATAAAATAAAAGATAAAGG+GGG - chr1_4:56817707-56817726 None:intergenic 15.0%
!! CAATAAAATAAAAGATAAAG+GGG - chr1_4:56817708-56817727 None:intergenic 15.0%
!!! GATTTTTAATATTTTCAACA+GGG + chr1_4:56817886-56817905 Msa0171980:intron 15.0%
!!! AAATTGTCTTGTTTTTTTTA+GGG - chr1_4:56817956-56817975 None:intergenic 15.0%
!!! TAAATTGTCTTGTTTTTTTT+AGG - chr1_4:56817957-56817976 None:intergenic 15.0%
!!! GAAAAATATTTTTGGTATTT+TGG - chr1_4:56818049-56818068 None:intergenic 15.0%
!!! TTGATTTGATTGATTTAATT+AGG - chr1_4:56818383-56818402 None:intergenic 15.0%
!!! TTTTTCTTATTGTATCATTT+CGG + chr1_4:56819008-56819027 Msa0171980:intron 15.0%
!! CTCTTAATTTACATAATAAA+AGG - chr1_4:56820867-56820886 None:intergenic 15.0%
!!! CTTTTATTATGTAAATTAAG+AGG + chr1_4:56820865-56820884 Msa0171980:intron 15.0%
!! ACTTATTAAATAGAAATAGA+AGG + chr1_4:56821268-56821287 Msa0171980:intron 15.0%
!! TTAAGAACGAAAATTAATTA+TGG + chr1_4:56822562-56822581 Msa0171980:intron 15.0%
!! TAAGAACGAAAATTAATTAT+GGG + chr1_4:56822563-56822582 Msa0171980:intron 15.0%
!!! TCTTTTTGAAATATCTTTTT+CGG + chr1_4:56822660-56822679 Msa0171980:intron 15.0%
!!! GATTATAAAATTTTAGTTTC+GGG + chr1_4:56822990-56823009 Msa0171980:intron 15.0%
!! GATAAAAATAAGTGTAAAAT+AGG + chr1_4:56823272-56823291 Msa0171980:intron 15.0%
!! GAAAGTAATTATTAAAATAG+GGG + chr1_4:56824830-56824849 Msa0171980:intron 15.0%
!!! AATAATGATGATGAAATGAT+TGG + chr1_4:56815996-56816015 Msa0171980:intron 20.0%
!!! ATAATGATGATGAAATGATT+GGG + chr1_4:56815997-56816016 Msa0171980:intron 20.0%
!! AAATACCATAAAAGTAATGA+AGG + chr1_4:56816110-56816129 Msa0171980:intron 20.0%
!! TGTATACGATGAATATTTAT+AGG + chr1_4:56816544-56816563 Msa0171980:intron 20.0%
!! TGAACTATATAAAAAGATCA+CGG - chr1_4:56816711-56816730 None:intergenic 20.0%
!!! TATATGCCAATTTTACTAAT+AGG + chr1_4:56816981-56817000 Msa0171980:intron 20.0%
!!! TTGGTAGTTCTTTTTTTTTT+TGG - chr1_4:56817270-56817289 None:intergenic 20.0%
!!! GGATTTTTAATATTTTCAAC+AGG + chr1_4:56817885-56817904 Msa0171980:intron 20.0%
!! ATTTATACCCTAAAAAAACA+AGG + chr1_4:56817911-56817930 Msa0171980:intron 20.0%
!!! TAAATTGCCTTGTTTTTTTA+GGG - chr1_4:56817921-56817940 None:intergenic 20.0%
!!! TTAAATTGCCTTGTTTTTTT+AGG - chr1_4:56817922-56817941 None:intergenic 20.0%
!! CAAATAAGTAAATCGTATAT+GGG - chr1_4:56818279-56818298 None:intergenic 20.0%
!! TCAAATAAGTAAATCGTATA+TGG - chr1_4:56818280-56818299 None:intergenic 20.0%
!! AAATTACCACAAATCTTAAT+AGG - chr1_4:56818889-56818908 None:intergenic 20.0%
!! GCTATTATTAGAAGAATAAA+AGG + chr1_4:56820656-56820675 Msa0171980:intron 20.0%
!! AAGTGCCATAATTTAATTAA+AGG - chr1_4:56820903-56820922 None:intergenic 20.0%
!! TTTATGTGATGAAAAAGATA+TGG + chr1_4:56820930-56820949 Msa0171980:intron 20.0%
!! ATGATGTTAGATTATCTAAA+TGG + chr1_4:56820960-56820979 Msa0171980:intron 20.0%
!! TGATGTTAGATTATCTAAAT+GGG + chr1_4:56820961-56820980 Msa0171980:intron 20.0%
!!! TTTTAGGAATACTGAATTTA+AGG - chr1_4:56821299-56821318 None:intergenic 20.0%
!! GTTAGACATATAATAAGTAA+AGG - chr1_4:56821544-56821563 None:intergenic 20.0%
!!! AAAAATCTGTTTTATTAACC+AGG + chr1_4:56821572-56821591 Msa0171980:intron 20.0%
!!! TTATACTATGTTTTTTGTAG+AGG + chr1_4:56822341-56822360 Msa0171980:intron 20.0%
!!! AATTTGCTAGTAAAATATGT+CGG - chr1_4:56822461-56822480 None:intergenic 20.0%
!! AAGAACGAAAATTAATTATG+GGG + chr1_4:56822564-56822583 Msa0171980:intron 20.0%
!! AATAGTAAAAAATAGGCAAT+AGG - chr1_4:56823112-56823131 None:intergenic 20.0%
!! TCTTGTCAATAGTAAAAAAT+AGG - chr1_4:56823119-56823138 None:intergenic 20.0%
!! TGGATTATGTTCATATAAAT+GGG - chr1_4:56823416-56823435 None:intergenic 20.0%
!!! ATGGATTATGTTCATATAAA+TGG - chr1_4:56823417-56823436 None:intergenic 20.0%
!!! TTATTTTATATGCTAAGAGA+AGG - chr1_4:56823675-56823694 None:intergenic 20.0%
!! CATCATAAAATCCATATATA+CGG - chr1_4:56823753-56823772 None:intergenic 20.0%
!!! AAAAAAACAAAGCTCAATTT+TGG + chr1_4:56824581-56824600 Msa0171980:CDS 20.0%
!! TACAATTCCAAAATAACATA+TGG - chr1_4:56825465-56825484 None:intergenic 20.0%
!!! TTTTGGAATTGTAAAAACAA+AGG + chr1_4:56825472-56825491 Msa0171980:CDS 20.0%
!!! TTTGGAATTGTAAAAACAAA+GGG + chr1_4:56825473-56825492 Msa0171980:CDS 20.0%
!! GAAAAGAAAATGAAGCTTTT+TGG + chr1_4:56815824-56815843 Msa0171980:CDS 25.0%
!!! AATCATTGTTTCTGAAAATG+AGG + chr1_4:56816071-56816090 Msa0171980:intron 25.0%
!!! ACTTTCCTTCATTACTTTTA+TGG - chr1_4:56816118-56816137 None:intergenic 25.0%
!!! TAACATTGACTTGTTTGATT+AGG - chr1_4:56816191-56816210 None:intergenic 25.0%
! TAATCAAACAAGTCAATGTT+AGG + chr1_4:56816190-56816209 Msa0171980:intron 25.0%
! AATCAAACAAGTCAATGTTA+GGG + chr1_4:56816191-56816210 Msa0171980:intron 25.0%
! ATCATTTATGATGCCTAATA+TGG + chr1_4:56816222-56816241 Msa0171980:intron 25.0%
! TTGAAAATGGACCTAAAATT+GGG + chr1_4:56816279-56816298 Msa0171980:intron 25.0%
!! GGATTTTTGCTAATTTTGTA+AGG - chr1_4:56816353-56816372 None:intergenic 25.0%
! ACTCTTTATACCAAAATATC+AGG + chr1_4:56816395-56816414 Msa0171980:intron 25.0%
! ATTGGCATATATGTGATTTA+AGG - chr1_4:56816972-56816991 None:intergenic 25.0%
! TGATCTAAATTGAGTTTATG+CGG - chr1_4:56817039-56817058 None:intergenic 25.0%
! ATTATAAACTCACAGAAAAG+TGG - chr1_4:56817224-56817243 None:intergenic 25.0%
!! ACTTTTCTGTGAGTTTATAA+TGG + chr1_4:56817223-56817242 Msa0171980:intron 25.0%
! TGATCTACTTATAAGATTCA+TGG + chr1_4:56817304-56817323 Msa0171980:intron 25.0%
!! CTTATAAGATTCATGGATTA+AGG + chr1_4:56817311-56817330 Msa0171980:intron 25.0%
! TTTGTAAGGATTATTAGTGT+GGG - chr1_4:56817409-56817428 None:intergenic 25.0%
!!! GCAATTCACGTTTTTTATTA+AGG - chr1_4:56817753-56817772 None:intergenic 25.0%
! TCTACTTACACTTTATTACT+TGG + chr1_4:56817807-56817826 Msa0171980:intron 25.0%
!! TGATTGATTTAATTAGGTCA+CGG - chr1_4:56818377-56818396 None:intergenic 25.0%
!! TTATCATATGACATTTTGCT+TGG + chr1_4:56818983-56819002 Msa0171980:intron 25.0%
! CATACACAATCAATAAATCA+CGG - chr1_4:56819061-56819080 None:intergenic 25.0%
!!! TTTTCAATGAGTTTTGATTG+TGG + chr1_4:56819638-56819657 Msa0171980:intron 25.0%
!!! TTTCAATGAGTTTTGATTGT+GGG + chr1_4:56819639-56819658 Msa0171980:intron 25.0%
! TGAACAAGTCAAATAACATA+GGG - chr1_4:56820079-56820098 None:intergenic 25.0%
! ATGAACAAGTCAAATAACAT+AGG - chr1_4:56820080-56820099 None:intergenic 25.0%
! AGAAGTAAGTAAAATAGTAC+AGG + chr1_4:56820554-56820573 Msa0171980:intron 25.0%
! GAAGTAAGTAAAATAGTACA+GGG + chr1_4:56820555-56820574 Msa0171980:intron 25.0%
! AGGTATTAACGATATTTACT+TGG + chr1_4:56820676-56820695 Msa0171980:intron 25.0%
!! GGAAAAGCATAAAAAGAAAA+AGG - chr1_4:56821153-56821172 None:intergenic 25.0%
!! TCTAATTAGCTTCAATTCAA+TGG - chr1_4:56821174-56821193 None:intergenic 25.0%
!!! AGATCGAAGTATTTGATTTT+AGG - chr1_4:56821315-56821334 None:intergenic 25.0%
! TCAGTGTAAAATAATCACAT+AGG - chr1_4:56821407-56821426 None:intergenic 25.0%
! GAACAATGTTATCACTTTAT+AGG + chr1_4:56821444-56821463 Msa0171980:intron 25.0%
!!! AAATCTTTGAGATAAAGTTG+AGG + chr1_4:56821492-56821511 Msa0171980:intron 25.0%
! TATTATATGTCTAACAGTAC+AGG + chr1_4:56821549-56821568 Msa0171980:intron 25.0%
!! TAGAGAATTTTTCCTTGAAA+TGG + chr1_4:56821872-56821891 Msa0171980:intron 25.0%
! TATAAAACAGATTTGATCTG+AGG + chr1_4:56822155-56822174 Msa0171980:intron 25.0%
! GACGATATTAAAGAAGAATT+GGG - chr1_4:56822188-56822207 None:intergenic 25.0%
! AGACGATATTAAAGAAGAAT+TGG - chr1_4:56822189-56822208 None:intergenic 25.0%
! GAAAATTAATTATGGGGTAT+TGG + chr1_4:56822570-56822589 Msa0171980:intron 25.0%
! TTTAATTACATGTTACCCTT+TGG + chr1_4:56822892-56822911 Msa0171980:intron 25.0%
! AACTCAAAATGATATCCAAA+GGG - chr1_4:56822910-56822929 None:intergenic 25.0%
! AAACTCAAAATGATATCCAA+AGG - chr1_4:56822911-56822930 None:intergenic 25.0%
! TTGAGTTTAAACTAGCAAAT+AGG + chr1_4:56822923-56822942 Msa0171980:intron 25.0%
!! CATTCATAAGTAACTTTTCA+AGG + chr1_4:56822959-56822978 Msa0171980:intron 25.0%
!!! TAAAATTTTAGTTTCGGGAA+TGG + chr1_4:56822995-56823014 Msa0171980:intron 25.0%
!!! TTTGAAGTATTGCTAATAGA+AGG + chr1_4:56823018-56823037 Msa0171980:intron 25.0%
! TGTTCATATAAATGGGTAAA+TGG - chr1_4:56823409-56823428 None:intergenic 25.0%
!! ATGTGGTAATGATAATAACA+AGG - chr1_4:56823450-56823469 None:intergenic 25.0%
! TATCATTACCACATCATATT+TGG + chr1_4:56823456-56823475 Msa0171980:intron 25.0%
! TCTTAAATCCAAATATGATG+TGG - chr1_4:56823467-56823486 None:intergenic 25.0%
!!! TATCCTTTTGTTGATTTTTC+AGG + chr1_4:56823523-56823542 Msa0171980:intron 25.0%
!!! CTGAGAATTTTTTTCTTTTG+CGG + chr1_4:56823701-56823720 Msa0171980:CDS 25.0%
!!! TGAGAATTTTTTTCTTTTGC+GGG + chr1_4:56823702-56823721 Msa0171980:CDS 25.0%
! TTTATGATGAGTGTAAAAGA+AGG + chr1_4:56823764-56823783 Msa0171980:CDS 25.0%
!! CAAAATCTTTTCATCAATGA+GGG - chr1_4:56823848-56823867 None:intergenic 25.0%
!! ACAAAATCTTTTCATCAATG+AGG - chr1_4:56823849-56823868 None:intergenic 25.0%
!! ATTTTCATATCACAGAAATG+GGG - chr1_4:56824167-56824186 None:intergenic 25.0%
!! CATTTTCATATCACAGAAAT+GGG - chr1_4:56824168-56824187 None:intergenic 25.0%
!! TCATTTTCATATCACAGAAA+TGG - chr1_4:56824169-56824188 None:intergenic 25.0%
! TATGTGAGAAATGGTTAATA+TGG - chr1_4:56824971-56824990 None:intergenic 25.0%
! AATAACCTAGATTAAGTGAT+TGG - chr1_4:56825247-56825266 None:intergenic 25.0%
! TTTGTAACAGTGAAAAACAA+TGG - chr1_4:56825523-56825542 None:intergenic 25.0%
! ATGTATATTCCTTTTGCACT+AGG - chr1_4:56815801-56815820 None:intergenic 30.0%
! GTTTCTGAAAATGAGGAAAT+AGG + chr1_4:56816078-56816097 Msa0171980:intron 30.0%
! TTCCTTTGTTTGACCATATT+AGG - chr1_4:56816238-56816257 None:intergenic 30.0%
AAAGGAAGTAACAAAACACA+TGG + chr1_4:56816251-56816270 Msa0171980:intron 30.0%
ACACATGGAAAACTTGAAAA+TGG + chr1_4:56816266-56816285 Msa0171980:intron 30.0%
CTTGAAAATGGACCTAAAAT+TGG + chr1_4:56816278-56816297 Msa0171980:intron 30.0%
TGGTATAAAGAGTTGTTAGT+TGG - chr1_4:56816388-56816407 None:intergenic 30.0%
AAGACTGAAACTATCAATGA+TGG + chr1_4:56816465-56816484 Msa0171980:intron 30.0%
! GGTTAAGATTTTGCAAGTTA+TGG + chr1_4:56816486-56816505 Msa0171980:intron 30.0%
! AACTTTTCCTACTAGACAAA+TGG + chr1_4:56816570-56816589 Msa0171980:intron 30.0%
!!! GTAAGTTTTTTCCTCATTGA+AGG + chr1_4:56816641-56816660 Msa0171980:intron 30.0%
AAAAAGATCACGGTTCAAAA+TGG - chr1_4:56816701-56816720 None:intergenic 30.0%
TGTAGCACACTTAATCAAAA+GGG - chr1_4:56816776-56816795 None:intergenic 30.0%
TTGTAGCACACTTAATCAAA+AGG - chr1_4:56816777-56816796 None:intergenic 30.0%
GATTAAGTGTGCTACAAATA+TGG + chr1_4:56816780-56816799 Msa0171980:intron 30.0%
CAATTGAATTGGTCAAAACT+CGG - chr1_4:56816839-56816858 None:intergenic 30.0%
CAATTCAATTGAACTTGAGA+CGG + chr1_4:56816848-56816867 Msa0171980:intron 30.0%
!! TTTTTGGTAGATAGACGAAA+TGG - chr1_4:56817254-56817273 None:intergenic 30.0%
TTTCCTAAATTGTCGTCTAA+AGG - chr1_4:56817341-56817360 None:intergenic 30.0%
TTGTAAGGATTATTAGTGTG+GGG - chr1_4:56817408-56817427 None:intergenic 30.0%
CTTTGTAAGGATTATTAGTG+TGG - chr1_4:56817410-56817429 None:intergenic 30.0%
CACACTAATAATCCTTACAA+AGG + chr1_4:56817408-56817427 Msa0171980:intron 30.0%
CATTTAAGTGATGAGTTCAT+GGG - chr1_4:56817533-56817552 None:intergenic 30.0%
TCATTTAAGTGATGAGTTCA+TGG - chr1_4:56817534-56817553 None:intergenic 30.0%
CAATGGTTAAGCATTAATCA+TGG - chr1_4:56817573-56817592 None:intergenic 30.0%
CATTCGTTGAAGTTAAACAA+TGG - chr1_4:56817590-56817609 None:intergenic 30.0%
TAACTTCAACGAATGATTAG+AGG + chr1_4:56817595-56817614 Msa0171980:intron 30.0%
AACTTCAACGAATGATTAGA+GGG + chr1_4:56817596-56817615 Msa0171980:intron 30.0%
!! TTTTGATTGCAGAATGTTAG+CGG - chr1_4:56817642-56817661 None:intergenic 30.0%
CAAAACATATGGTTGGATTT+AGG - chr1_4:56817851-56817870 None:intergenic 30.0%
ATATTAAAAATCCCCGACAA+TGG - chr1_4:56817878-56817897 None:intergenic 30.0%
!!! GGTTTCATTTGGTTTTTGTT+GGG - chr1_4:56818441-56818460 None:intergenic 30.0%
ATGATTTCGTGTTTCAACAT+GGG + chr1_4:56818945-56818964 Msa0171980:intron 30.0%
! TCTTTTCTTTTCTCTGTATC+AGG + chr1_4:56819141-56819160 Msa0171980:intron 30.0%
TAAACACTTGTGTTGTAGTA+AGG - chr1_4:56819732-56819751 None:intergenic 30.0%
TGACATAGGAAGTAAGAAAT+AGG - chr1_4:56819809-56819828 None:intergenic 30.0%
GAACAAGTCAAATAACATAG+GGG - chr1_4:56820078-56820097 None:intergenic 30.0%
CTGGAATCAGTTGTATAAAA+AGG + chr1_4:56820528-56820547 Msa0171980:intron 30.0%
ATTCCTTTATCTTGAGTTTG+TGG + chr1_4:56820616-56820635 Msa0171980:intron 30.0%
TTCCTTTATCTTGAGTTTGT+GGG + chr1_4:56820617-56820636 Msa0171980:intron 30.0%
TTACAAGTTAGTTAGAGAAG+TGG + chr1_4:56820699-56820718 Msa0171980:intron 30.0%
CATAATAAAAGGTCACATCA+AGG - chr1_4:56820856-56820875 None:intergenic 30.0%
!!! ATTTTGACTGAAGATAGAGA+AGG - chr1_4:56821114-56821133 None:intergenic 30.0%
!!! TGTTATTTTTCAGCTACAGA+GGG + chr1_4:56821217-56821236 Msa0171980:intron 30.0%
! GGAATACTGAATTTAAGGTT+TGG - chr1_4:56821294-56821313 None:intergenic 30.0%
AGTCTTAAGCACAATTGATA+TGG - chr1_4:56821373-56821392 None:intergenic 30.0%
ACGTAAAACGCATTTCTAAA+CGG + chr1_4:56821623-56821642 Msa0171980:intron 30.0%
!!! CTCCTTTATCTTTTAAGTTC+CGG + chr1_4:56821678-56821697 Msa0171980:intron 30.0%
AACCGGAACTTAAAAGATAA+AGG - chr1_4:56821683-56821702 None:intergenic 30.0%
ACCAATTTACTGTCACATTT+GGG - chr1_4:56821720-56821739 None:intergenic 30.0%
TACCAATTTACTGTCACATT+TGG - chr1_4:56821721-56821740 None:intergenic 30.0%
!! AGGTTCTGTTTCTGAATATT+GGG + chr1_4:56821761-56821780 Msa0171980:intron 30.0%
ATTTCAAGCATTCCATTTCA+AGG - chr1_4:56821887-56821906 None:intergenic 30.0%
!! TAGTGTTTTGTTGAGATTGA+AGG + chr1_4:56821925-56821944 Msa0171980:intron 30.0%
AACAAATATGACCCATTTCA+AGG - chr1_4:56821977-56821996 None:intergenic 30.0%
! ATGGGTCATATTTGTTAAAC+TGG + chr1_4:56821981-56822000 Msa0171980:intron 30.0%
! TGTCAAAACAATTTTGCTCA+AGG - chr1_4:56822118-56822137 None:intergenic 30.0%
AATGATGGTATTGTTACTCT+TGG + chr1_4:56822256-56822275 Msa0171980:intron 30.0%
! CATGTTTGAAGTTTAAACCT+TGG - chr1_4:56822285-56822304 None:intergenic 30.0%
AGTTGTTAAAAGCCTAACAT+TGG + chr1_4:56822392-56822411 Msa0171980:intron 30.0%
AAGTTATCTCATCCAATGTT+AGG - chr1_4:56822407-56822426 None:intergenic 30.0%
CAAATTAGCAATGACCAAAT+AGG + chr1_4:56822475-56822494 Msa0171980:intron 30.0%
!!! TTACAATTTTAGGGCCAAAA+CGG - chr1_4:56822800-56822819 None:intergenic 30.0%
! GACAACACCTTACAATTTTA+GGG - chr1_4:56822809-56822828 None:intergenic 30.0%
! TGACAACACCTTACAATTTT+AGG - chr1_4:56822810-56822829 None:intergenic 30.0%
AGTTTAAACTAGCAAATAGG+AGG + chr1_4:56822926-56822945 Msa0171980:intron 30.0%
GTTTAAACTAGCAAATAGGA+GGG + chr1_4:56822927-56822946 Msa0171980:intron 30.0%
AAGCAACCTTTCATATTGTT+GGG - chr1_4:56823299-56823318 None:intergenic 30.0%
ATAACAAGGACTTCAATAGA+TGG - chr1_4:56823436-56823455 None:intergenic 30.0%
GTCAATATTCTGATCTTCTA+AGG + chr1_4:56823557-56823576 Msa0171980:CDS 30.0%
CGCAAAAGAAAAAAATTCTC+AGG - chr1_4:56823703-56823722 None:intergenic 30.0%
!!! GAGAATTTTTTTCTTTTGCG+GGG + chr1_4:56823703-56823722 Msa0171980:CDS 30.0%
GCTTCTATTAACCGTATATA+TGG + chr1_4:56823739-56823758 Msa0171980:CDS 30.0%
GTAAAAGAAGGTTCAATGTA+AGG + chr1_4:56823776-56823795 Msa0171980:CDS 30.0%
TTCTCCTGACTTACATAATT+TGG + chr1_4:56823885-56823904 Msa0171980:CDS 30.0%
TGATCCAAATTATGTAAGTC+AGG - chr1_4:56823892-56823911 None:intergenic 30.0%
!! ATATACATTTGGTGCTGATA+AGG + chr1_4:56824029-56824048 Msa0171980:CDS 30.0%
CATCATAAACAGCTGATAAA+TGG - chr1_4:56824313-56824332 None:intergenic 30.0%
! TGCATAATTATCTTTTGACC+AGG + chr1_4:56824406-56824425 Msa0171980:intron 30.0%
! ATAATTATCTTTTGACCAGG+TGG + chr1_4:56824409-56824428 Msa0171980:intron 30.0%
AAAATATTGTTACAAGCTGC+CGG - chr1_4:56824463-56824482 None:intergenic 30.0%
! GCAGCTTGTAACAATATTTT+CGG + chr1_4:56824463-56824482 Msa0171980:CDS 30.0%
!! TATCAGCTGGCTTTAATATT+TGG - chr1_4:56824562-56824581 None:intergenic 30.0%
!!! AGCTTTGTTTTTTTATCAGC+TGG - chr1_4:56824575-56824594 None:intergenic 30.0%
AGAGAGAAAAAGAATCAAGA+CGG - chr1_4:56824718-56824737 None:intergenic 30.0%
!! ATGATCATGCTTCTAGAATT+TGG + chr1_4:56824798-56824817 Msa0171980:intron 30.0%
AATAGATCACAGAACAGAAA+AGG - chr1_4:56824910-56824929 None:intergenic 30.0%
AACCATTTCTCACATAACTT+CGG + chr1_4:56824975-56824994 Msa0171980:CDS 30.0%
AATGGAACAAACTACATACA+TGG + chr1_4:56825066-56825085 Msa0171980:CDS 30.0%
! GAAACAATTGATTCATCCAA+TGG - chr1_4:56825126-56825145 None:intergenic 30.0%
CATTTCCAATCACTTAATCT+AGG + chr1_4:56825239-56825258 Msa0171980:intron 30.0%
!! CGAAAGTATGAAGTTGATTT+TGG + chr1_4:56825393-56825412 Msa0171980:CDS 30.0%
!! TCGAGATCCATATGTTATTT+TGG + chr1_4:56825455-56825474 Msa0171980:CDS 30.0%
ATTAGTGTACAAAGAAAGCA+AGG - chr1_4:56825581-56825600 None:intergenic 30.0%
TTTCTTTGTACACTAATACC+TGG + chr1_4:56825584-56825603 Msa0171980:CDS 30.0%
TAAAACTCAGAACATATACC+AGG - chr1_4:56825605-56825624 None:intergenic 30.0%
GATGAAAATGCTCATACAAT+TGG + chr1_4:56825672-56825691 Msa0171980:three_prime_UTR 30.0%
ATGCTCATACAATTGGTATA+TGG + chr1_4:56825679-56825698 Msa0171980:three_prime_UTR 30.0%
TGCTCATACAATTGGTATAT+GGG + chr1_4:56825680-56825699 Msa0171980:three_prime_UTR 30.0%
CTCTGTTGGACAATCATTAA+GGG - chr1_4:56815850-56815869 None:intergenic 35.0%
ACTCTGTTGGACAATCATTA+AGG - chr1_4:56815851-56815870 None:intergenic 35.0%
TTAATGATTGTCCAACAGAG+TGG + chr1_4:56815850-56815869 Msa0171980:CDS 35.0%
ATGAAATGATTGGGAAGATC+TGG + chr1_4:56816006-56816025 Msa0171980:intron 35.0%
!!! GGGAAGATCTGGTTTTTTAT+TGG + chr1_4:56816017-56816036 Msa0171980:intron 35.0%
TACTGCCTTTGATATAAGTC+TGG - chr1_4:56816157-56816176 None:intergenic 35.0%
ATCAAAGGCAGTAAAACGAT+CGG + chr1_4:56816164-56816183 Msa0171980:intron 35.0%
TGCCTAATATGGTCAAACAA+AGG + chr1_4:56816233-56816252 Msa0171980:intron 35.0%
GTTAGTTGGACTTGAATCAT+GGG - chr1_4:56816374-56816393 None:intergenic 35.0%
TGTTAGTTGGACTTGAATCA+TGG - chr1_4:56816375-56816394 None:intergenic 35.0%
! GTGCTCTTTTCCTGATATTT+TGG - chr1_4:56816408-56816427 None:intergenic 35.0%
TTCCTCATTGAAGGATTATG+TGG + chr1_4:56816650-56816669 Msa0171980:intron 35.0%
TAGCACACTTAATCAAAAGG+GGG - chr1_4:56816774-56816793 None:intergenic 35.0%
GTAGCACACTTAATCAAAAG+GGG - chr1_4:56816775-56816794 None:intergenic 35.0%
TACAAATATGGAACACACGT+TGG + chr1_4:56816792-56816811 Msa0171980:intron 35.0%
CGTCTCAAGTTCAATTGAAT+TGG - chr1_4:56816850-56816869 None:intergenic 35.0%
GCGATATTACAATCGAACAA+AGG - chr1_4:56816911-56816930 None:intergenic 35.0%
TCGTCTAACCTGATATTGAT+TGG + chr1_4:56816931-56816950 Msa0171980:intron 35.0%
! CGTCTAACCTGATATTGATT+GGG + chr1_4:56816932-56816951 Msa0171980:intron 35.0%
! GTCTAACCTGATATTGATTG+GGG + chr1_4:56816933-56816952 Msa0171980:intron 35.0%
! TCTAACCTGATATTGATTGG+GGG + chr1_4:56816934-56816953 Msa0171980:intron 35.0%
! TTGATAATTCTACAAGGCGT+AGG - chr1_4:56817115-56817134 None:intergenic 35.0%
! CCTCTCTTGATAATTCTACA+AGG - chr1_4:56817121-56817140 None:intergenic 35.0%
CCTTGTAGAATTATCAAGAG+AGG + chr1_4:56817118-56817137 Msa0171980:intron 35.0%
GGCAAAATGCCAAAATTGTT+AGG + chr1_4:56817162-56817181 Msa0171980:intron 35.0%
ATAAACTCACAGAAAAGTGG+AGG - chr1_4:56817221-56817240 None:intergenic 35.0%
GAACCTTTAGACGACAATTT+AGG + chr1_4:56817335-56817354 Msa0171980:intron 35.0%
ATAGGGTCATCAATCCTATA+GGG - chr1_4:56817442-56817461 None:intergenic 35.0%
TATAGGGTCATCAATCCTAT+AGG - chr1_4:56817443-56817462 None:intergenic 35.0%
AAAAACGTGAATTGCCTAGT+TGG + chr1_4:56817758-56817777 Msa0171980:intron 35.0%
TGATTTAATTAGGTCACGGA+AGG - chr1_4:56818373-56818392 None:intergenic 35.0%
TTCGTTTCAGTGGAATGAAA+GGG - chr1_4:56818410-56818429 None:intergenic 35.0%
TTTCGTTTCAGTGGAATGAA+AGG - chr1_4:56818411-56818430 None:intergenic 35.0%
!!! CATTTGGTTTTTGTTGGGAA+GGG - chr1_4:56818436-56818455 None:intergenic 35.0%
!!! TCATTTGGTTTTTGTTGGGA+AGG - chr1_4:56818437-56818456 None:intergenic 35.0%
!!! GGGTTTCATTTGGTTTTTGT+TGG - chr1_4:56818442-56818461 None:intergenic 35.0%
! AGTTTGCTTTGGGTTTCATT+TGG - chr1_4:56818452-56818471 None:intergenic 35.0%
! GTTTACGGAGTCAGAATTTT+GGG - chr1_4:56818482-56818501 None:intergenic 35.0%
GGTATAAAATCGAAGAAGAG+TGG - chr1_4:56818616-56818635 None:intergenic 35.0%
! TTGTTTGTGTTTTGCAGAGA+TGG + chr1_4:56818708-56818727 Msa0171980:intron 35.0%
CTTGCAGCAACCTAATTTAT+TGG + chr1_4:56818852-56818871 Msa0171980:CDS 35.0%
GCTTCAAGCTCCAATAAATT+AGG - chr1_4:56818865-56818884 None:intergenic 35.0%
! GAAGCACCTATTAAGATTTG+TGG + chr1_4:56818880-56818899 Msa0171980:CDS 35.0%
CATGATTTCGTGTTTCAACA+TGG + chr1_4:56818944-56818963 Msa0171980:intron 35.0%
! TTCGGTATTTTGTACATGTC+TGG + chr1_4:56819026-56819045 Msa0171980:intron 35.0%
AGTGTCTTAGTGAAGTTTGT+GGG + chr1_4:56819091-56819110 Msa0171980:intron 35.0%
TGCTTTGATAAGTTGCTAGT+TGG + chr1_4:56819188-56819207 Msa0171980:intron 35.0%
TAAACCTCAGTTGTCAATAG+CGG + chr1_4:56819365-56819384 Msa0171980:intron 35.0%
ACAACACAAGTGTTTATCGA+TGG + chr1_4:56819736-56819755 Msa0171980:intron 35.0%
! CAACCATGAAAAATCGGTTT+AGG - chr1_4:56819781-56819800 None:intergenic 35.0%
!! CTAAACCGATTTTTCATGGT+TGG + chr1_4:56819779-56819798 Msa0171980:intron 35.0%
GCTTTCCAACCATGAAAAAT+CGG - chr1_4:56819787-56819806 None:intergenic 35.0%
TCTTACTTCCTATGTCAAGT+AGG + chr1_4:56819812-56819831 Msa0171980:intron 35.0%
TCATCTCCATATTCTTGGAA+AGG - chr1_4:56819994-56820013 None:intergenic 35.0%
TTCTCTCATCTCCATATTCT+TGG - chr1_4:56819999-56820018 None:intergenic 35.0%
GAATATGGAGATGAGAGAAA+TGG + chr1_4:56820000-56820019 Msa0171980:intron 35.0%
AGGAAGGATCAAATTCTGTA+AGG + chr1_4:56820023-56820042 Msa0171980:intron 35.0%
CATAGGGGAGTTATTCTAAA+CGG - chr1_4:56820063-56820082 None:intergenic 35.0%
TGCAAAGCTAAAATCTGTGT+TGG - chr1_4:56820189-56820208 None:intergenic 35.0%
GAAGGTTACTATCAGAGAAA+AGG - chr1_4:56820289-56820308 None:intergenic 35.0%
! ATTTGAGGCACAAAGATTGA+AGG - chr1_4:56820307-56820326 None:intergenic 35.0%
TCAATCTTTGTGCCTCAAAT+CGG + chr1_4:56820307-56820326 Msa0171980:intron 35.0%
GATGAAGTTCCAGATTTCAA+AGG + chr1_4:56820503-56820522 Msa0171980:intron 35.0%
!! ATTCCAGATCCTTTGAAATC+TGG - chr1_4:56820515-56820534 None:intergenic 35.0%
TCAAGATAAAGGAATCCTTC+AGG - chr1_4:56820611-56820630 None:intergenic 35.0%
!! AAGGTGAAAGTATTTGTGGT+TGG - chr1_4:56820837-56820856 None:intergenic 35.0%
!! CATCAAGGTGAAAGTATTTG+TGG - chr1_4:56820841-56820860 None:intergenic 35.0%
TTAGATTATCTAAATGGGCG+AGG + chr1_4:56820966-56820985 Msa0171980:intron 35.0%
! TGGTCAATTGATTTCACCTT+GGG - chr1_4:56821015-56821034 None:intergenic 35.0%
! AGGAAGGTTTCAGCTTTTAA+TGG - chr1_4:56821071-56821090 None:intergenic 35.0%
! AGATAGAGAAGGCATGAAAA+GGG - chr1_4:56821103-56821122 None:intergenic 35.0%
! AAGATAGAGAAGGCATGAAA+AGG - chr1_4:56821104-56821123 None:intergenic 35.0%
!!! GTGTTATTTTTCAGCTACAG+AGG + chr1_4:56821216-56821235 Msa0171980:intron 35.0%
TAAGTAAAGGTTTGCAATGC+TGG - chr1_4:56821531-56821550 None:intergenic 35.0%
GCATACGAATTTCAATTTCC+TGG - chr1_4:56821593-56821612 None:intergenic 35.0%
GAAATTCGTATGCTATGATG+TGG + chr1_4:56821600-56821619 Msa0171980:intron 35.0%
CGTAAAACGCATTTCTAAAC+GGG + chr1_4:56821624-56821643 Msa0171980:intron 35.0%
ATGTGACAGTAAATTGGTAC+AGG + chr1_4:56821722-56821741 Msa0171980:intron 35.0%
!! GAGGTTCTGTTTCTGAATAT+TGG + chr1_4:56821760-56821779 Msa0171980:intron 35.0%
CAAGAGAAGTTGTGTGAAAT+TGG + chr1_4:56821845-56821864 Msa0171980:intron 35.0%
! TGTTTCAAGTGTCCTTGAAA+TGG + chr1_4:56821962-56821981 Msa0171980:intron 35.0%
! GTTTCAAGTGTCCTTGAAAT+GGG + chr1_4:56821963-56821982 Msa0171980:intron 35.0%
TGAACAACTGGGAAAAATGA+TGG + chr1_4:56822241-56822260 Msa0171980:intron 35.0%
ATTGTTACTCTTGGATTCCA+AGG + chr1_4:56822265-56822284 Msa0171980:intron 35.0%
TAGTAAAATATGTCGGCAGA+TGG - chr1_4:56822454-56822473 None:intergenic 35.0%
AGTTTCACAATACGCCTATT+TGG - chr1_4:56822492-56822511 None:intergenic 35.0%
! CATCTAGACTGATTCAACTT+TGG - chr1_4:56822529-56822548 None:intergenic 35.0%
CAAAGTTGAATCAGTCTAGA+TGG + chr1_4:56822527-56822546 Msa0171980:intron 35.0%
!! GTTTTGGCCCTAAAATTGTA+AGG + chr1_4:56822799-56822818 Msa0171980:intron 35.0%
GTTAGTAACACTCGGATAAA+AGG - chr1_4:56823047-56823066 None:intergenic 35.0%
! TCAAATCTGAAACTTGCTCA+AGG + chr1_4:56823140-56823159 Msa0171980:intron 35.0%
! CAAATCTGAAACTTGCTCAA+GGG + chr1_4:56823141-56823160 Msa0171980:intron 35.0%
! AAATCTGAAACTTGCTCAAG+GGG + chr1_4:56823142-56823161 Msa0171980:intron 35.0%
ATAGGACCCAACAATATGAA+AGG + chr1_4:56823290-56823309 Msa0171980:intron 35.0%
GAAGCAACCTTTCATATTGT+TGG - chr1_4:56823300-56823319 None:intergenic 35.0%
ATCTGATATATCCTTGTGCA+CGG + chr1_4:56823352-56823371 Msa0171980:intron 35.0%
TCGCCTGAAAAATCAACAAA+AGG - chr1_4:56823529-56823548 None:intergenic 35.0%
!!! CTTCTAAGGCTTTTTGAGTA+TGG + chr1_4:56823571-56823590 Msa0171980:CDS 35.0%
ATCACCCAAAAACAAGTAGT+TGG - chr1_4:56823614-56823633 None:intergenic 35.0%
!!! CTTGTTTTTGGGTGATTATG+TGG + chr1_4:56823618-56823637 Msa0171980:CDS 35.0%
! GGTTAATAGAAGCACATTCA+TGG - chr1_4:56823732-56823751 None:intergenic 35.0%
GAAGGTTCAATGTAAGGATA+TGG + chr1_4:56823782-56823801 Msa0171980:CDS 35.0%
GTTCAATGTAAGGATATGGA+AGG + chr1_4:56823786-56823805 Msa0171980:CDS 35.0%
! GAAAAGATTTTGTGCATGCA+TGG + chr1_4:56823856-56823875 Msa0171980:CDS 35.0%
ATCAGATTAGAAACCTACAG+AGG + chr1_4:56823908-56823927 Msa0171980:CDS 35.0%
AACCTTGAACTTCTTTGCTA+GGG - chr1_4:56823984-56824003 None:intergenic 35.0%
TAGCAAAGAAGTTCAAGGTT+GGG + chr1_4:56823984-56824003 Msa0171980:CDS 35.0%
! GTTTCTTCAGAAGCATGATT+TGG + chr1_4:56824059-56824078 Msa0171980:CDS 35.0%
AAAGTTTAACCTGATGAGCA+CGG - chr1_4:56824095-56824114 None:intergenic 35.0%
! TCAGGTTAAACTTTTGCCTT+TGG + chr1_4:56824101-56824120 Msa0171980:intron 35.0%
AGCAACATATTGAGAACCAA+AGG - chr1_4:56824120-56824139 None:intergenic 35.0%
!! TTTGGTTCTCAATATGTTGC+TGG + chr1_4:56824119-56824138 Msa0171980:intron 35.0%
! TTGGTTCTCAATATGTTGCT+GGG + chr1_4:56824120-56824139 Msa0171980:intron 35.0%
CAATCCTAATCTTTCTCTCA+GGG + chr1_4:56824202-56824221 Msa0171980:intron 35.0%
! AGCTGATAAATGGACTTGAA+CGG - chr1_4:56824303-56824322 None:intergenic 35.0%
GATATGAGTTCTTTGCTAAC+CGG + chr1_4:56824441-56824460 Msa0171980:CDS 35.0%
! TGATTCTTTTTCTCTCTGTC+TGG + chr1_4:56824721-56824740 Msa0171980:intron 35.0%
TATCACAACAACGCAGAATT+TGG + chr1_4:56824855-56824874 Msa0171980:intron 35.0%
ATCCGAAGTTATGTGAGAAA+TGG - chr1_4:56824980-56824999 None:intergenic 35.0%
CTCACATAACTTCGGATTAT+TGG + chr1_4:56824983-56825002 Msa0171980:CDS 35.0%
! ATTGATTCATCCAATGGCTT+TGG - chr1_4:56825120-56825139 None:intergenic 35.0%
AACTTCATACTTTCGTACCA+AGG - chr1_4:56825388-56825407 None:intergenic 35.0%
!! GAAGTTGATTTTGGCGAAAA+TGG + chr1_4:56825402-56825421 Msa0171980:CDS 35.0%
ATGGTCTACATAGTTCATGA+TGG - chr1_4:56825504-56825523 None:intergenic 35.0%
GAAAGCAAGGAAGAGATTAT+GGG - chr1_4:56825568-56825587 None:intergenic 35.0%
AGAAAGCAAGGAAGAGATTA+TGG - chr1_4:56825569-56825588 None:intergenic 35.0%
TCATACAATTGGTATATGGG+TGG + chr1_4:56825683-56825702 Msa0171980:three_prime_UTR 35.0%
TCGAATTTCCTCTCCATGTT+GGG - chr1_4:56815896-56815915 None:intergenic 40.0%
GAGGTCCAGACTTATATCAA+AGG + chr1_4:56816149-56816168 Msa0171980:intron 40.0%
!! CGACTGGTGGGTTAAAATAA+TGG + chr1_4:56816302-56816321 Msa0171980:intron 40.0%
TTCCTACTAGACAAATGGCA+TGG + chr1_4:56816575-56816594 Msa0171980:intron 40.0%
! TACCATGCCATTTGTCTAGT+AGG - chr1_4:56816580-56816599 None:intergenic 40.0%
! CCTTGCTCGACTTTTTATGT+GGG + chr1_4:56816612-56816631 Msa0171980:intron 40.0%
TGCCACATAATCCTTCAATG+AGG - chr1_4:56816655-56816674 None:intergenic 40.0%
ACTTAATCAAAAGGGGGGAT+GGG - chr1_4:56816768-56816787 None:intergenic 40.0%
AGCACACTTAATCAAAAGGG+GGG - chr1_4:56816773-56816792 None:intergenic 40.0%
ACTCGGTAGAACTAGACAAT+GGG - chr1_4:56816822-56816841 None:intergenic 40.0%
AACTCGGTAGAACTAGACAA+TGG - chr1_4:56816823-56816842 None:intergenic 40.0%
AGTTTCCCCCAATCAATATC+AGG - chr1_4:56816942-56816961 None:intergenic 40.0%
! GACGTCTGACCTAACAATTT+TGG - chr1_4:56817174-56817193 None:intergenic 40.0%
! TCACAGAAAAGTGGAGGTAT+CGG - chr1_4:56817215-56817234 None:intergenic 40.0%
GATCATCACACTTTCTCTCT+TGG - chr1_4:56817289-56817308 None:intergenic 40.0%
! TCAATTACCTCTGAGAGAGT+AGG + chr1_4:56817381-56817400 Msa0171980:intron 40.0%
! ATAGCCTTAGTGTGATCAGT+AGG + chr1_4:56817476-56817495 Msa0171980:intron 40.0%
TACACCTACTGATCACACTA+AGG - chr1_4:56817483-56817502 None:intergenic 40.0%
ACATATGGTTGGATTTAGGC+AGG - chr1_4:56817847-56817866 None:intergenic 40.0%
ACAATGGCGCACAAAACATA+TGG - chr1_4:56817862-56817881 None:intergenic 40.0%
! TATGTTTTGTGCGCCATTGT+CGG + chr1_4:56817862-56817881 Msa0171980:intron 40.0%
AACTGATGTTGATGTGGTAG+TGG - chr1_4:56818115-56818134 None:intergenic 40.0%
GTGGTAAACTGATGTTGATG+TGG - chr1_4:56818121-56818140 None:intergenic 40.0%
! CCACATACACGTTTTTGTAG+CGG + chr1_4:56818137-56818156 Msa0171980:intron 40.0%
!!! GTTTTTGTAGCGGATAACGA+CGG + chr1_4:56818147-56818166 Msa0171980:intron 40.0%
TTAATTAGGTCACGGAAGGA+AGG - chr1_4:56818369-56818388 None:intergenic 40.0%
TCGTTTCAGTGGAATGAAAG+GGG - chr1_4:56818409-56818428 None:intergenic 40.0%
! GGTTTACGGAGTCAGAATTT+TGG - chr1_4:56818483-56818502 None:intergenic 40.0%
! AGAGATGGAACAAGCAGTTT+TGG + chr1_4:56818723-56818742 Msa0171980:intron 40.0%
TAGCAGTAGAACATAGCTGA+CGG - chr1_4:56818822-56818841 None:intergenic 40.0%
GAGTGTCTTAGTGAAGTTTG+TGG + chr1_4:56819090-56819109 Msa0171980:intron 40.0%
CAAACCTCTGATGTCAATAG+TGG + chr1_4:56819231-56819250 Msa0171980:intron 40.0%
ATCACGGGGATAAACATGTT+GGG + chr1_4:56819461-56819480 Msa0171980:intron 40.0%
GATAAACATGTTGGGTTTCG+TGG + chr1_4:56819469-56819488 Msa0171980:intron 40.0%
! CATGAAAAATCGGTTTAGGC+GGG - chr1_4:56819777-56819796 None:intergenic 40.0%
! CCATGAAAAATCGGTTTAGG+CGG - chr1_4:56819778-56819797 None:intergenic 40.0%
TACTTCCTATGTCAAGTAGG+TGG + chr1_4:56819815-56819834 Msa0171980:intron 40.0%
GCTTCTACAATGAACAAGCT+GGG + chr1_4:56819837-56819856 Msa0171980:intron 40.0%
! GATGTCAGAGTGGATTCATT+CGG - chr1_4:56819868-56819887 None:intergenic 40.0%
!! AAAGGAGGAAGCTCTAAAGA+CGG - chr1_4:56819976-56819995 None:intergenic 40.0%
CTTCCTCCTTTCCAAGAATA+TGG + chr1_4:56819985-56820004 Msa0171980:intron 40.0%
TCTCCATATTCTTGGAAAGG+AGG - chr1_4:56819991-56820010 None:intergenic 40.0%
TATGGAGATGAGAGAAATGG+AGG + chr1_4:56820003-56820022 Msa0171980:intron 40.0%
GTTAAAATGAGGGAAGGTCA+TGG - chr1_4:56820116-56820135 None:intergenic 40.0%
TAAGACAGCAACACCAACAT+GGG - chr1_4:56820221-56820240 None:intergenic 40.0%
TTAAGACAGCAACACCAACA+TGG - chr1_4:56820222-56820241 None:intergenic 40.0%
ACTATCAGAGAAAAGGTGAG+AGG - chr1_4:56820282-56820301 None:intergenic 40.0%
TTGCTGAGATGGATAAGTAG+AGG - chr1_4:56820392-56820411 None:intergenic 40.0%
GTTCCAGATTTCAAAGGATC+TGG + chr1_4:56820509-56820528 Msa0171980:intron 40.0%
ATAATCCAAACTCAGCCTGA+AGG + chr1_4:56820593-56820612 Msa0171980:intron 40.0%
CTCCCACAAACTCAAGATAA+AGG - chr1_4:56820622-56820641 None:intergenic 40.0%
AGTTAGTTAGAGAAGTGGCT+AGG + chr1_4:56820704-56820723 Msa0171980:intron 40.0%
TTTCACCTTGGGTCATTAGT+TGG - chr1_4:56821004-56821023 None:intergenic 40.0%
! CTGGTCAATTGATTTCACCT+TGG - chr1_4:56821016-56821035 None:intergenic 40.0%
CAATTGACCAGATACTGTTG+TGG + chr1_4:56821025-56821044 Msa0171980:intron 40.0%
! CCATGTTTTGCGTATGTGTT+CGG + chr1_4:56821194-56821213 Msa0171980:intron 40.0%
! TTTTCAGCTACAGAGGGATA+AGG + chr1_4:56821223-56821242 Msa0171980:intron 40.0%
TTTCAGCTACAGAGGGATAA+GGG + chr1_4:56821224-56821243 Msa0171980:intron 40.0%
TTTACACTGAAATGCAACGC+AGG + chr1_4:56821417-56821436 Msa0171980:intron 40.0%
GCCCAAATGTGACAGTAAAT+TGG + chr1_4:56821716-56821735 Msa0171980:intron 40.0%
! AGCGTAGACTGTTTGTTTCT+AGG + chr1_4:56821787-56821806 Msa0171980:intron 40.0%
AATGCATCCTTCTGCATCTA+TGG + chr1_4:56822306-56822325 Msa0171980:intron 40.0%
TAGTTGACCATAGATGCAGA+AGG - chr1_4:56822316-56822335 None:intergenic 40.0%
TTCTGCATCTATGGTCAACT+AGG + chr1_4:56822315-56822334 Msa0171980:intron 40.0%
TTTCGGTTGCACAACAAAGT+TGG + chr1_4:56822677-56822696 Msa0171980:intron 40.0%
TTCGGTTGCACAACAAAGTT+GGG + chr1_4:56822678-56822697 Msa0171980:intron 40.0%
AACAAAGTTGGGTGATGACT+TGG + chr1_4:56822689-56822708 Msa0171980:intron 40.0%
ACCTGGGTGAACCTATTTAA+AGG + chr1_4:56823075-56823094 Msa0171980:intron 40.0%
CCTGGGTGAACCTATTTAAA+GGG + chr1_4:56823076-56823095 Msa0171980:intron 40.0%
AGAGAGCTGTCCCTTTAAAT+AGG - chr1_4:56823089-56823108 None:intergenic 40.0%
! TGGTCTTGATCATAGTGACA+AGG - chr1_4:56823177-56823196 None:intergenic 40.0%
GTCACTATGATCAAGACCAA+CGG + chr1_4:56823178-56823197 Msa0171980:intron 40.0%
TCACTATGATCAAGACCAAC+GGG + chr1_4:56823179-56823198 Msa0171980:intron 40.0%
!!! GATTTTTCAGGCGACATACA+TGG + chr1_4:56823535-56823554 Msa0171980:intron 40.0%
!!! CTAAGGCTTTTTGAGTATGG+TGG + chr1_4:56823574-56823593 Msa0171980:CDS 40.0%
! AAAAACAAGTAGTTGGCCTG+AGG - chr1_4:56823607-56823626 None:intergenic 40.0%
!! TCAGGCCAACTACTTGTTTT+TGG + chr1_4:56823606-56823625 Msa0171980:CDS 40.0%
!! CAGGCCAACTACTTGTTTTT+GGG + chr1_4:56823607-56823626 Msa0171980:CDS 40.0%
! AAGATTTTGTGCATGCATGG+CGG + chr1_4:56823859-56823878 Msa0171980:CDS 40.0%
CAACCTTGAACTTCTTTGCT+AGG - chr1_4:56823985-56824004 None:intergenic 40.0%
CTAGCAAAGAAGTTCAAGGT+TGG + chr1_4:56823983-56824002 Msa0171980:CDS 40.0%
AGCAAAGAAGTTCAAGGTTG+GGG + chr1_4:56823985-56824004 Msa0171980:CDS 40.0%
!! AGGGGAGTGTCATATACATT+TGG + chr1_4:56824018-56824037 Msa0171980:CDS 40.0%
GCAATCCTAATCTTTCTCTC+AGG + chr1_4:56824201-56824220 Msa0171980:intron 40.0%
ATGACCCTGAGAGAAAGATT+AGG - chr1_4:56824209-56824228 None:intergenic 40.0%
TGACACACATTTATGCACTG+AGG + chr1_4:56824267-56824286 Msa0171980:intron 40.0%
CAATTCTTCGATCGCAATAC+AGG - chr1_4:56824352-56824371 None:intergenic 40.0%
! ATTATCTTTTGACCAGGTGG+TGG + chr1_4:56824412-56824431 Msa0171980:intron 40.0%
TCAAACTCCCCACAGTAATT+AGG - chr1_4:56824491-56824510 None:intergenic 40.0%
AGAGTTTCCTGGTTTAGTAG+TGG - chr1_4:56824615-56824634 None:intergenic 40.0%
ACAACGCAGAATTTGGAGAT+AGG + chr1_4:56824862-56824881 Msa0171980:intron 40.0%
CAACGCAGAATTTGGAGATA+GGG + chr1_4:56824863-56824882 Msa0171980:intron 40.0%
!! TAGTCGTGCAAGAAAGCATT+TGG + chr1_4:56825028-56825047 Msa0171980:CDS 40.0%
!! AGTCGTGCAAGAAAGCATTT+GGG + chr1_4:56825029-56825048 Msa0171980:CDS 40.0%
!! TGGGGCATTGAATTTAGCAA+TGG + chr1_4:56825048-56825067 Msa0171980:CDS 40.0%
TCATACTTTCGTACCAAGGA+AGG - chr1_4:56825384-56825403 None:intergenic 40.0%
AAAATGGTTGCTGTCACAAC+TGG + chr1_4:56825418-56825437 Msa0171980:CDS 40.0%
TATGTCTACGAATGCTTGAG+AGG - chr1_4:56825630-56825649 None:intergenic 40.0%
TGGGTGGAAGTTGAGAATAA+AGG + chr1_4:56825699-56825718 Msa0171980:three_prime_UTR 40.0%
ATGATTGTCCAACAGAGTGG+TGG + chr1_4:56815853-56815872 Msa0171980:CDS 45.0%
CTCGAATTTCCTCTCCATGT+TGG - chr1_4:56815897-56815916 None:intergenic 45.0%
ACATGGAGAGGAAATTCGAG+AGG + chr1_4:56815897-56815916 Msa0171980:intron 45.0%
TGAGCCTCGATGCACAATAA+CGG + chr1_4:56815934-56815953 Msa0171980:intron 45.0%
AGAACCGTTATTGTGCATCG+AGG - chr1_4:56815941-56815960 None:intergenic 45.0%
!! AGGAAAGTGCCAATAGAACG+AGG + chr1_4:56816130-56816149 Msa0171980:intron 45.0%
AAGTCTGGACCTCGTTCTAT+TGG - chr1_4:56816142-56816161 None:intergenic 45.0%
ACGCTATACCACATGGTGAA+AGG + chr1_4:56816429-56816448 Msa0171980:intron 45.0%
CGCTATACCACATGGTGAAA+GGG + chr1_4:56816430-56816449 Msa0171980:intron 45.0%
GCTATACCACATGGTGAAAG+GGG + chr1_4:56816431-56816450 Msa0171980:intron 45.0%
TGCAAGTTATGGCCCATATG+TGG + chr1_4:56816497-56816516 Msa0171980:intron 45.0%
! GCCTTGCTCGACTTTTTATG+TGG + chr1_4:56816611-56816630 Msa0171980:intron 45.0%
CCCACATAAAAAGTCGAGCA+AGG - chr1_4:56816615-56816634 None:intergenic 45.0%
! TGCTCGACTTTTTATGTGGG+TGG + chr1_4:56816615-56816634 Msa0171980:intron 45.0%
ATAAACACACCTTGCATGGG+AGG - chr1_4:56816744-56816763 None:intergenic 45.0%
GGCATAAACACACCTTGCAT+GGG - chr1_4:56816747-56816766 None:intergenic 45.0%
CACTTAATCAAAAGGGGGGA+TGG - chr1_4:56816769-56816788 None:intergenic 45.0%
! GAGACGGACTTAATCTTCAG+TGG + chr1_4:56816864-56816883 Msa0171980:intron 45.0%
ATTCTACAAGGCGTAGGAAG+TGG - chr1_4:56817109-56817128 None:intergenic 45.0%
!! ACAGAAAAGTGGAGGTATCG+GGG - chr1_4:56817213-56817232 None:intergenic 45.0%
!! CACAGAAAAGTGGAGGTATC+GGG - chr1_4:56817214-56817233 None:intergenic 45.0%
TATACACGCGCTACGGTATA+GGG - chr1_4:56817459-56817478 None:intergenic 45.0%
TGATTGCAGAATGTTAGCGG+CGG - chr1_4:56817639-56817658 None:intergenic 45.0%
CAAAGACTGACGTTCCAACT+AGG - chr1_4:56817775-56817794 None:intergenic 45.0%
AGTTGGAACGTCAGTCTTTG+TGG + chr1_4:56817775-56817794 Msa0171980:intron 45.0%
TGGCGCACAAAACATATGGT+TGG - chr1_4:56817858-56817877 None:intergenic 45.0%
! ATGTTTTGTGCGCCATTGTC+GGG + chr1_4:56817863-56817882 Msa0171980:intron 45.0%
CCGCTACAAAAACGTGTATG+TGG - chr1_4:56818140-56818159 None:intergenic 45.0%
CGTTTCAGTGGAATGAAAGG+GGG - chr1_4:56818408-56818427 None:intergenic 45.0%
GGAAGGGAATTTCGTTTCAG+TGG - chr1_4:56818420-56818439 None:intergenic 45.0%
!! GGGCATTCGTAGTTTGCTTT+GGG - chr1_4:56818462-56818481 None:intergenic 45.0%
!! TGGGCATTCGTAGTTTGCTT+TGG - chr1_4:56818463-56818482 None:intergenic 45.0%
!! CGGTGTCGTTTAGAGGTTTA+CGG - chr1_4:56818497-56818516 None:intergenic 45.0%
!!! AAACACCGTCGTTTTGAGAG+AGG - chr1_4:56818522-56818541 None:intergenic 45.0%
TGATTGTGACGATGAAGACG+AGG - chr1_4:56818552-56818571 None:intergenic 45.0%
CGAAGAAGAGTGGAAGAAGT+GGG - chr1_4:56818606-56818625 None:intergenic 45.0%
TCGAAGAAGAGTGGAAGAAG+TGG - chr1_4:56818607-56818626 None:intergenic 45.0%
ACAGCCACTATTGACATCAG+AGG - chr1_4:56819238-56819257 None:intergenic 45.0%
ATGTCAATAGTGGCTGTGAG+CGG + chr1_4:56819241-56819260 Msa0171980:intron 45.0%
CATCACGGGAGAAATGCATT+GGG + chr1_4:56819326-56819345 Msa0171980:intron 45.0%
GAGAAATGCATTGGGTTTCG+TGG + chr1_4:56819334-56819353 Msa0171980:intron 45.0%
CAACATGTTTATCCCCGTGA+TGG - chr1_4:56819462-56819481 None:intergenic 45.0%
CATCACGGGGATAAACATGT+TGG + chr1_4:56819460-56819479 Msa0171980:intron 45.0%
AAACATGTTGGGTTTCGTGG+TGG + chr1_4:56819472-56819491 Msa0171980:intron 45.0%
ACAAGTGTTTATCGATGGCC+AGG + chr1_4:56819741-56819760 Msa0171980:intron 45.0%
!! CCGCCTAAACCGATTTTTCA+TGG + chr1_4:56819775-56819794 Msa0171980:intron 45.0%
AGAAGCCACCTACTTGACAT+AGG - chr1_4:56819823-56819842 None:intergenic 45.0%
GGCTTCTACAATGAACAAGC+TGG + chr1_4:56819836-56819855 Msa0171980:intron 45.0%
!! TAGTGGTTCTGATGTCAGAG+TGG - chr1_4:56819878-56819897 None:intergenic 45.0%
TGCTGAAGTGAAATAGCCGA+GGG - chr1_4:56819922-56819941 None:intergenic 45.0%
! CTAAAGACGGGGATTAGTGA+GGG - chr1_4:56819963-56819982 None:intergenic 45.0%
! TCTAAAGACGGGGATTAGTG+AGG - chr1_4:56819964-56819983 None:intergenic 45.0%
!! AAGGAGGAAGCTCTAAAGAC+GGG - chr1_4:56819975-56819994 None:intergenic 45.0%
GAGATGAGAGAAATGGAGGA+AGG + chr1_4:56820007-56820026 Msa0171980:intron 45.0%
CTGAGGGGCAGTTAAAATGA+GGG - chr1_4:56820126-56820145 None:intergenic 45.0%
TGCAGTGATTAAGCCCATGT+TGG + chr1_4:56820205-56820224 Msa0171980:intron 45.0%
TCAACATGAGCTTGCGGTTT+GGG - chr1_4:56820255-56820274 None:intergenic 45.0%
ATCAACATGAGCTTGCGGTT+TGG - chr1_4:56820256-56820275 None:intergenic 45.0%
GGAACATCAACATGAGCTTG+CGG - chr1_4:56820261-56820280 None:intergenic 45.0%
ATCTTTGTGCCTCAAATCGG+TGG + chr1_4:56820310-56820329 Msa0171980:intron 45.0%
!! CTCTCTTTACCACCGATTTG+AGG - chr1_4:56820322-56820341 None:intergenic 45.0%
CTCAAATCGGTGGTAAAGAG+AGG + chr1_4:56820320-56820339 Msa0171980:intron 45.0%
GAGAGGCTTCGTTGTCAATT+CGG + chr1_4:56820337-56820356 Msa0171980:intron 45.0%
AGAGGACAGAGAGTAGTCTT+AGG - chr1_4:56820374-56820393 None:intergenic 45.0%
TGTGCTAACACTGTGTTTCG+TGG + chr1_4:56820470-56820489 Msa0171980:intron 45.0%
GTGCTAACACTGTGTTTCGT+GGG + chr1_4:56820471-56820490 Msa0171980:intron 45.0%
TAACACTGTGTTTCGTGGGA+GGG + chr1_4:56820475-56820494 Msa0171980:intron 45.0%
TTGAGTTTGTGGGAGCTGTA+GGG + chr1_4:56820627-56820646 Msa0171980:intron 45.0%
TGTTGCCAACTAATGACCCA+AGG + chr1_4:56820996-56821015 Msa0171980:intron 45.0%
AAAAGGGCAAAAGGCTAGGA+AGG - chr1_4:56821087-56821106 None:intergenic 45.0%
CATGAAAAGGGCAAAAGGCT+AGG - chr1_4:56821091-56821110 None:intergenic 45.0%
! GAAGGCATGAAAAGGGCAAA+AGG - chr1_4:56821096-56821115 None:intergenic 45.0%
CCGAACACATACGCAAAACA+TGG - chr1_4:56821197-56821216 None:intergenic 45.0%
AAATTGGTACAGGCCCTGTA+TGG + chr1_4:56821732-56821751 Msa0171980:intron 45.0%
AGAACCTCCATGTCCATACA+GGG - chr1_4:56821748-56821767 None:intergenic 45.0%
ATGCTTTAGCCAGTTAAGCC+AGG + chr1_4:56822210-56822229 Msa0171980:intron 45.0%
TGCTTTAGCCAGTTAAGCCA+GGG + chr1_4:56822211-56822230 Msa0171980:intron 45.0%
! AGGGTTGGCATTGAACAACT+GGG + chr1_4:56822230-56822249 Msa0171980:intron 45.0%
! TAACGAGTGAAGCTCCGTTT+TGG + chr1_4:56822783-56822802 Msa0171980:intron 45.0%
CGACTCAGGTTAGTAACACT+CGG - chr1_4:56823055-56823074 None:intergenic 45.0%
TTACTAACCTGAGTCGACCT+GGG + chr1_4:56823059-56823078 Msa0171980:intron 45.0%
CCCTTTAAATAGGTTCACCC+AGG - chr1_4:56823079-56823098 None:intergenic 45.0%
CACTATGATCAAGACCAACG+GGG + chr1_4:56823180-56823199 Msa0171980:intron 45.0%
TTGGGTGATTATGTGGATCG+AGG + chr1_4:56823625-56823644 Msa0171980:CDS 45.0%
TGGGTGATTATGTGGATCGA+GGG + chr1_4:56823626-56823645 Msa0171980:CDS 45.0%
TTGCTTCAATTGCCTACCTG+TGG + chr1_4:56823819-56823838 Msa0171980:CDS 45.0%
TCGCAAAGCAAACCTGTATC+AGG - chr1_4:56823946-56823965 None:intergenic 45.0%
GACCCTAGCAAAGAAGTTCA+AGG + chr1_4:56823979-56823998 Msa0171980:CDS 45.0%
AAGGTTGGGGAATGAATGAC+AGG + chr1_4:56823998-56824017 Msa0171980:CDS 45.0%
AGGTTGGGGAATGAATGACA+GGG + chr1_4:56823999-56824018 Msa0171980:CDS 45.0%
! TCTTATTTGCCGTGCTCATC+AGG + chr1_4:56824083-56824102 Msa0171980:CDS 45.0%
! TTTTCGGCGCCTAATTACTG+TGG + chr1_4:56824479-56824498 Msa0171980:CDS 45.0%
TTTCGGCGCCTAATTACTGT+GGG + chr1_4:56824480-56824499 Msa0171980:CDS 45.0%
AGTACGACCACTACTAAACC+AGG + chr1_4:56824605-56824624 Msa0171980:CDS 45.0%
AAACTCTCCAGCAGGTGTAA+AGG + chr1_4:56824628-56824647 Msa0171980:CDS 45.0%
GCACAAAATCAACCGTGAGT+TGG + chr1_4:56824687-56824706 Msa0171980:intron 45.0%
! CTTTTTCTCTCTGTCTGGCT+TGG + chr1_4:56824726-56824745 Msa0171980:intron 45.0%
!! GTCGTGCAAGAAAGCATTTG+GGG + chr1_4:56825030-56825049 Msa0171980:CDS 45.0%
!!! TTTTTTTTTTTTTTTATCTT+CGG - chr1_4:56818324-56818343 None:intergenic 5.0%
GACACTAACCACCACTCTGT+TGG - chr1_4:56815864-56815883 None:intergenic 50.0%
TGTCGCAGACAATCCCAACA+TGG + chr1_4:56815880-56815899 Msa0171980:intron 50.0%
CAGACAATCCCAACATGGAG+AGG + chr1_4:56815885-56815904 Msa0171980:intron 50.0%
TGGACCTAAAATTGGGCGAC+TGG + chr1_4:56816286-56816305 Msa0171980:intron 50.0%
ACCTAAAATTGGGCGACTGG+TGG + chr1_4:56816289-56816308 Msa0171980:intron 50.0%
CCTAAAATTGGGCGACTGGT+GGG + chr1_4:56816290-56816309 Msa0171980:intron 50.0%
AATGGAGTCCCAAAACTGCG+TGG + chr1_4:56816320-56816339 Msa0171980:intron 50.0%
AGTCCCAAAACTGCGTGGTT+TGG + chr1_4:56816325-56816344 Msa0171980:intron 50.0%
! GCTCCAAACCACGCAGTTTT+GGG - chr1_4:56816331-56816350 None:intergenic 50.0%
GAGCACAACGCTATACCACA+TGG + chr1_4:56816422-56816441 Msa0171980:intron 50.0%
ATACCACATGGTGAAAGGGG+TGG + chr1_4:56816434-56816453 Msa0171980:intron 50.0%
ATTATGTGGCATCCCACGCT+CGG + chr1_4:56816664-56816683 Msa0171980:intron 50.0%
GAAAGCTATCAACCGAGCGT+GGG - chr1_4:56816679-56816698 None:intergenic 50.0%
GGGCATAAACACACCTTGCA+TGG - chr1_4:56816748-56816767 None:intergenic 50.0%
TCCACAAGTCCTAGCTCAAC+TGG + chr1_4:56817141-56817160 Msa0171980:intron 50.0%
! GGCATTTTGCCAGTTGAGCT+AGG - chr1_4:56817153-56817172 None:intergenic 50.0%
GTTAGGTCAGACGTCATGAC+CGG + chr1_4:56817179-56817198 Msa0171980:intron 50.0%
TTAGGTCAGACGTCATGACC+GGG + chr1_4:56817180-56817199 Msa0171980:intron 50.0%
AGGGCACGTACACCTTTGTA+AGG - chr1_4:56817423-56817442 None:intergenic 50.0%
! CAAAGGTGTACGTGCCCTAT+AGG + chr1_4:56817425-56817444 Msa0171980:intron 50.0%
CTATACACGCGCTACGGTAT+AGG - chr1_4:56817460-56817479 None:intergenic 50.0%
CTAAGGCTATACACGCGCTA+CGG - chr1_4:56817466-56817485 None:intergenic 50.0%
! TGTTTTGTGCGCCATTGTCG+GGG + chr1_4:56817864-56817883 Msa0171980:intron 50.0%
!! TGATGTGGTAGTGGATGACG+TGG - chr1_4:56818106-56818125 None:intergenic 50.0%
!! AGAGGAACGGTGTCGTTTAG+AGG - chr1_4:56818504-56818523 None:intergenic 50.0%
!!! CCGTCGTTTTGAGAGAGGAA+CGG - chr1_4:56818517-56818536 None:intergenic 50.0%
CCGTTCCTCTCTCAAAACGA+CGG + chr1_4:56818514-56818533 Msa0171980:intron 50.0%
TTGTGACGATGAAGACGAGG+AGG - chr1_4:56818549-56818568 None:intergenic 50.0%
TTGAAGTTCGTAGCCGTCCA+GGG + chr1_4:56818767-56818786 Msa0171980:CDS 50.0%
ATGCATTTCTCCCGTGATGG+TGG - chr1_4:56819325-56819344 None:intergenic 50.0%
CCAATGCATTTCTCCCGTGA+TGG - chr1_4:56819328-56819347 None:intergenic 50.0%
CCATCACGGGAGAAATGCAT+TGG + chr1_4:56819325-56819344 Msa0171980:intron 50.0%
ACAGCCGCTATTGACAACTG+AGG - chr1_4:56819372-56819391 None:intergenic 50.0%
TTGTCAATAGCGGCTGTGAG+CGG + chr1_4:56819375-56819394 Msa0171980:intron 50.0%
CATGTTTATCCCCGTGATGG+TGG - chr1_4:56819459-56819478 None:intergenic 50.0%
CGTGTATCAGCCCTGCTTTA+GGG - chr1_4:56819521-56819540 None:intergenic 50.0%
TCGTGTATCAGCCCTGCTTT+AGG - chr1_4:56819522-56819541 None:intergenic 50.0%
TAGGCGGGAAGATATTGTCC+TGG - chr1_4:56819762-56819781 None:intergenic 50.0%
TGAAGTGAAATAGCCGAGGG+AGG - chr1_4:56819919-56819938 None:intergenic 50.0%
CTGCTGAAGTGAAATAGCCG+AGG - chr1_4:56819923-56819942 None:intergenic 50.0%
!! AGGAGGAAGCTCTAAAGACG+GGG - chr1_4:56819974-56819993 None:intergenic 50.0%
ATGAGGGAAGGTCATGGAAG+AGG - chr1_4:56820110-56820129 None:intergenic 50.0%
GGGGCAGTTAAAATGAGGGA+AGG - chr1_4:56820122-56820141 None:intergenic 50.0%
GCTGAGGGGCAGTTAAAATG+AGG - chr1_4:56820127-56820146 None:intergenic 50.0%
!! TCTGCAGTCTTGAGTGCTGA+GGG - chr1_4:56820142-56820161 None:intergenic 50.0%
ATAATGCACAGCCCCCAATC+GGG - chr1_4:56820434-56820453 None:intergenic 50.0%
GATAATGCACAGCCCCCAAT+CGG - chr1_4:56820435-56820454 None:intergenic 50.0%
CTAACACTGTGTTTCGTGGG+AGG + chr1_4:56820474-56820493 Msa0171980:intron 50.0%
GGAATCCTTCAGGCTGAGTT+TGG - chr1_4:56820601-56820620 None:intergenic 50.0%
CTTGAGTTTGTGGGAGCTGT+AGG + chr1_4:56820626-56820645 Msa0171980:intron 50.0%
TTTGTGGGAGCTGTAGGGTT+AGG + chr1_4:56820632-56820651 Msa0171980:intron 50.0%
TTGTGGGAGCTGTAGGGTTA+GGG + chr1_4:56820633-56820652 Msa0171980:intron 50.0%
GACCAGATACTGTTGTGGCA+TGG + chr1_4:56821030-56821049 Msa0171980:intron 50.0%
TGCCATGCCACAACAGTATC+TGG - chr1_4:56821035-56821054 None:intergenic 50.0%
AGCTACAGAGGGATAAGGGT+TGG + chr1_4:56821228-56821247 Msa0171980:intron 50.0%
! GTTCCGGTTTTCTACCTCAC+AGG + chr1_4:56821694-56821713 Msa0171980:intron 50.0%
CAGAACCTCCATGTCCATAC+AGG - chr1_4:56821749-56821768 None:intergenic 50.0%
TTAGCCAGTTAAGCCAGGGT+TGG + chr1_4:56822215-56822234 Msa0171980:intron 50.0%
AATGCCAACCCTGGCTTAAC+TGG - chr1_4:56822222-56822241 None:intergenic 50.0%
CAGTTGTTCAATGCCAACCC+TGG - chr1_4:56822231-56822250 None:intergenic 50.0%
! CAGGGTTGGCATTGAACAAC+TGG + chr1_4:56822229-56822248 Msa0171980:intron 50.0%
! ATGTCGGCAGATGGCATTGA+AGG - chr1_4:56822445-56822464 None:intergenic 50.0%
!! GGGTGATGACTTGGTGATTG+AGG + chr1_4:56822698-56822717 Msa0171980:intron 50.0%
GTTACTAACCTGAGTCGACC+TGG + chr1_4:56823058-56823077 Msa0171980:intron 50.0%
TGATCAAGACCAACGGGGTT+TGG + chr1_4:56823185-56823204 Msa0171980:intron 50.0%
TACTCTTCACCAAACCCCGT+TGG - chr1_4:56823197-56823216 None:intergenic 50.0%
CCAAAACAATGCCGTGCACA+AGG - chr1_4:56823366-56823385 None:intergenic 50.0%
! CCTTGTGCACGGCATTGTTT+TGG + chr1_4:56823363-56823382 Msa0171980:intron 50.0%
!! GTATGGTGGATTACCTCCTC+AGG + chr1_4:56823588-56823607 Msa0171980:CDS 50.0%
! AACAAGTAGTTGGCCTGAGG+AGG - chr1_4:56823604-56823623 None:intergenic 50.0%
CCTGTATCAGGCACATCAGT+CGG - chr1_4:56823934-56823953 None:intergenic 50.0%
GTTTGCTTTGCGATCTCCTC+TGG + chr1_4:56823953-56823972 Msa0171980:CDS 50.0%
GGTTGGGGAATGAATGACAG+GGG + chr1_4:56824000-56824019 Msa0171980:CDS 50.0%
!! ATCTTTTGACCAGGTGGTGG+AGG + chr1_4:56824415-56824434 Msa0171980:intron 50.0%
TTCGGCGCCTAATTACTGTG+GGG + chr1_4:56824481-56824500 Msa0171980:CDS 50.0%
AAACCAGGAAACTCTCCAGC+AGG + chr1_4:56824620-56824639 Msa0171980:CDS 50.0%
TCTCCAGCAGGTGTAAAGGT+AGG + chr1_4:56824632-56824651 Msa0171980:intron 50.0%
CTTCCTACCTTTACACCTGC+TGG - chr1_4:56824638-56824657 None:intergenic 50.0%
AAGACGGCATTGCCAACTCA+CGG - chr1_4:56824702-56824721 None:intergenic 50.0%
! TCTGAAGCAGCCAAAGCCAT+TGG + chr1_4:56825107-56825126 Msa0171980:CDS 50.0%
GGACTGCAAGGAAGCAGAAA+GGG - chr1_4:56825363-56825382 None:intergenic 50.0%
AGGACTGCAAGGAAGCAGAA+AGG - chr1_4:56825364-56825383 None:intergenic 50.0%
! CCCACCAGTCGCCCAATTTT+AGG - chr1_4:56816293-56816312 None:intergenic 55.0%
! GGCTCCAAACCACGCAGTTT+TGG - chr1_4:56816332-56816351 None:intergenic 55.0%
CACATGGTGAAAGGGGTGGA+GGG + chr1_4:56816438-56816457 Msa0171980:intron 55.0%
TGGCCCATATGTGGTTGCGA+CGG + chr1_4:56816506-56816525 Msa0171980:intron 55.0%
CCTCCGTCGCAACCACATAT+GGG - chr1_4:56816512-56816531 None:intergenic 55.0%
ACCTCCGTCGCAACCACATA+TGG - chr1_4:56816513-56816532 None:intergenic 55.0%
GGAAAGCTATCAACCGAGCG+TGG - chr1_4:56816680-56816699 None:intergenic 55.0%
TGTGTGCAACCTCCCATGCA+AGG + chr1_4:56816732-56816751 Msa0171980:intron 55.0%
GCCAGTTGAGCTAGGACTTG+TGG - chr1_4:56817145-56817164 None:intergenic 55.0%
TAGGTCAGACGTCATGACCG+GGG + chr1_4:56817181-56817200 Msa0171980:intron 55.0%
TGACGATGAAGACGAGGAGG+AGG - chr1_4:56818546-56818565 None:intergenic 55.0%
CTGGACGGCTACGAACTTCA+AGG - chr1_4:56818768-56818787 None:intergenic 55.0%
CTTGAAGTTCGTAGCCGTCC+AGG + chr1_4:56818766-56818785 Msa0171980:CDS 55.0%
AGGGAAGCAGGTTCAGCTGT+CGG + chr1_4:56818786-56818805 Msa0171980:CDS 55.0%
GTACACTCCAATGCGTCTGG+GGG - chr1_4:56819277-56819296 None:intergenic 55.0%
GGTACACTCCAATGCGTCTG+GGG - chr1_4:56819278-56819297 None:intergenic 55.0%
CGGTACACTCCAATGCGTCT+GGG - chr1_4:56819279-56819298 None:intergenic 55.0%
CCAGACGCATTGGAGTGTAC+CGG + chr1_4:56819277-56819296 Msa0171980:intron 55.0%
ACGCATTGGAGTGTACCGGA+CGG + chr1_4:56819281-56819300 Msa0171980:intron 55.0%
CTACAGACGCTATACCCGTC+CGG - chr1_4:56819299-56819318 None:intergenic 55.0%
GACGGGTATAGCGTCTGTAG+CGG + chr1_4:56819299-56819318 Msa0171980:intron 55.0%
TGGAGTGTACCGGATGGGTA+TGG + chr1_4:56819421-56819440 Msa0171980:intron 55.0%
CTACAGACGCCATACCCATC+CGG - chr1_4:56819433-56819452 None:intergenic 55.0%
GATGGGTATGGCGTCTGTAG+CGG + chr1_4:56819433-56819452 Msa0171980:intron 55.0%
CATGTTGGGTTTCGTGGTGG+AGG + chr1_4:56819475-56819494 Msa0171980:intron 55.0%
!! CAGCCCTGCTTTAGGGTTTG+CGG - chr1_4:56819514-56819533 None:intergenic 55.0%
GTGAAATAGCCGAGGGAGGA+GGG - chr1_4:56819915-56819934 None:intergenic 55.0%
AGTGAAATAGCCGAGGGAGG+AGG - chr1_4:56819916-56819935 None:intergenic 55.0%
! ACGGGGATTAGTGAGGGAGA+CGG - chr1_4:56819957-56819976 None:intergenic 55.0%
!! CTGCAGTCTTGAGTGCTGAG+GGG - chr1_4:56820141-56820160 None:intergenic 55.0%
! CTCTGCAGTCTTGAGTGCTG+AGG - chr1_4:56820143-56820162 None:intergenic 55.0%
AAGACTGCAGAGCCAAGCCA+TGG + chr1_4:56820151-56820170 Msa0171980:intron 55.0%
CGTTGACAACCTCCATGGCT+TGG - chr1_4:56820166-56820185 None:intergenic 55.0%
!! GTTGGCGTTGACAACCTCCA+TGG - chr1_4:56820171-56820190 None:intergenic 55.0%
!! ACGCCGTTTTCTGTCCCGAT+TGG + chr1_4:56820417-56820436 Msa0171980:intron 55.0%
!! CGCCGTTTTCTGTCCCGATT+GGG + chr1_4:56820418-56820437 Msa0171980:intron 55.0%
!! GCCGTTTTCTGTCCCGATTG+GGG + chr1_4:56820419-56820438 Msa0171980:intron 55.0%
CCCCCAATCGGGACAGAAAA+CGG - chr1_4:56820423-56820442 None:intergenic 55.0%
! CCGTTTTCTGTCCCGATTGG+GGG + chr1_4:56820420-56820439 Msa0171980:intron 55.0%
TGTGGGAGCTGTAGGGTTAG+GGG + chr1_4:56820634-56820653 Msa0171980:intron 55.0%
GGGCCTGTGAGGTAGAAAAC+CGG - chr1_4:56821700-56821719 None:intergenic 55.0%
CTGTCACATTTGGGCCTGTG+AGG - chr1_4:56821711-56821730 None:intergenic 55.0%
GTACAGGCCCTGTATGGACA+TGG + chr1_4:56821738-56821757 Msa0171980:intron 55.0%
TCATCAATGAGGGCTGCCAC+AGG - chr1_4:56823838-56823857 None:intergenic 55.0%
CCGACTGATGTGCCTGATAC+AGG + chr1_4:56823931-56823950 Msa0171980:CDS 55.0%
CTTTGCTAGGGTCTGACCAG+AGG - chr1_4:56823972-56823991 None:intergenic 55.0%
!! TTTGACCAGGTGGTGGAGGA+TGG + chr1_4:56824419-56824438 Msa0171980:intron 55.0%
CATATCCATCCTCCACCACC+TGG - chr1_4:56824427-56824446 None:intergenic 55.0%
TGTGGGGAGTTTGACAACGC+TGG + chr1_4:56824497-56824516 Msa0171980:CDS 55.0%
ACACCTGCTGGAGAGTTTCC+TGG - chr1_4:56824626-56824645 None:intergenic 55.0%
CTGCAAGGAAGCAGAAAGGG+CGG - chr1_4:56825360-56825379 None:intergenic 55.0%
GCTTCCTTGCAGTCCTTCCT+TGG + chr1_4:56825368-56825387 Msa0171980:intron 55.0%
CGTACCAAGGAAGGACTGCA+AGG - chr1_4:56825375-56825394 None:intergenic 55.0%
CTGTCACAACTGGTCAGCGA+AGG + chr1_4:56825428-56825447 Msa0171980:CDS 55.0%
CCTCCACCCCTTTCACCATG+TGG - chr1_4:56816440-56816459 None:intergenic 60.0%
CCACATGGTGAAAGGGGTGG+AGG + chr1_4:56816437-56816456 Msa0171980:intron 60.0%
CCCATATGTGGTTGCGACGG+AGG + chr1_4:56816509-56816528 Msa0171980:intron 60.0%
!! AGGTATCGGGGTTCGAACCC+CGG - chr1_4:56817201-56817220 None:intergenic 60.0%
GTGGGGTCCTACTCTCTCAG+AGG - chr1_4:56817391-56817410 None:intergenic 60.0%
GCTGAACCTGCTTCCCTGGA+CGG - chr1_4:56818783-56818802 None:intergenic 60.0%
GACAGCTGAACCTGCTTCCC+TGG - chr1_4:56818787-56818806 None:intergenic 60.0%
GCAGGTTCAGCTGTCGGAGA+CGG + chr1_4:56818792-56818811 Msa0171980:CDS 60.0%
CCGGTACACTCCAATGCGTC+TGG - chr1_4:56819280-56819299 None:intergenic 60.0%
CGCATTGGAGTGTACCGGAC+GGG + chr1_4:56819282-56819301 Msa0171980:intron 60.0%
GTCTGTAGCGGCCACCATCA+CGG + chr1_4:56819311-56819330 Msa0171980:intron 60.0%
TCTGTAGCGGCCACCATCAC+GGG + chr1_4:56819312-56819331 Msa0171980:intron 60.0%
TCAATAGCGGCTGTGAGCGG+TGG + chr1_4:56819378-56819397 Msa0171980:intron 60.0%
GTACACTCCAACGCGTCTGG+GGG - chr1_4:56819411-56819430 None:intergenic 60.0%
GGTACACTCCAACGCGTCTG+GGG - chr1_4:56819412-56819431 None:intergenic 60.0%
CGGTACACTCCAACGCGTCT+GGG - chr1_4:56819413-56819432 None:intergenic 60.0%
CCAGACGCGTTGGAGTGTAC+CGG + chr1_4:56819411-56819430 Msa0171980:intron 60.0%
ACGCGTTGGAGTGTACCGGA+TGG + chr1_4:56819415-56819434 Msa0171980:intron 60.0%
CGCGTTGGAGTGTACCGGAT+GGG + chr1_4:56819416-56819435 Msa0171980:intron 60.0%
GTCTGTAGCGGCCACCATCA+CGG + chr1_4:56819311-56819330 Msa0171980:intron 60.0%
TCTGTAGCGGCCACCATCAC+GGG + chr1_4:56819312-56819331 Msa0171980:intron 60.0%
! GTTGGGTTTCGTGGTGGAGG+CGG + chr1_4:56819478-56819497 Msa0171980:intron 60.0%
CGGCCGCAAACCCTAAAGCA+GGG + chr1_4:56819508-56819527 Msa0171980:intron 60.0%
! GGGTGTCACAGCAGCAGTAG+TGG - chr1_4:56819895-56819914 None:intergenic 60.0%
AGTGAGGGAGACGGAGGTGA+AGG - chr1_4:56819948-56819967 None:intergenic 60.0%
! GGGATTAGTGAGGGAGACGG+AGG - chr1_4:56819954-56819973 None:intergenic 60.0%
ACTGCAGAGCCAAGCCATGG+AGG + chr1_4:56820154-56820173 Msa0171980:intron 60.0%
CAGGCCCTGTATGGACATGG+AGG + chr1_4:56821741-56821760 Msa0171980:intron 60.0%
! AGGTTCACCCAGGTCGACTC+AGG - chr1_4:56823069-56823088 None:intergenic 60.0%
CAATGAGGGCTGCCACAGGT+AGG - chr1_4:56823834-56823853 None:intergenic 60.0%
GCACATCAGTCGGCCTCTGT+AGG - chr1_4:56823924-56823943 None:intergenic 60.0%
TCGTAGCCGTCCAGGGAAGC+AGG + chr1_4:56818774-56818793 Msa0171980:CDS 65.0%
TAGTCCGCCCCCAGACGCAT+TGG + chr1_4:56819267-56819286 Msa0171980:intron 65.0%
CACTCCAATGCGTCTGGGGG+CGG - chr1_4:56819274-56819293 None:intergenic 65.0%
TAGTCCACCCCCAGACGCGT+TGG + chr1_4:56819401-56819420 Msa0171980:intron 65.0%
CCGGTACACTCCAACGCGTC+TGG - chr1_4:56819414-56819433 None:intergenic 65.0%
CTGTAGCGGCCACCATCACG+GGG + chr1_4:56819313-56819332 Msa0171980:intron 65.0%
! TTCGTGGTGGAGGCGGAGCA+AGG + chr1_4:56819485-56819504 Msa0171980:intron 65.0%
GCGGCCGCAAACCCTAAAGC+AGG + chr1_4:56819507-56819526 Msa0171980:intron 65.0%
GCTGTGACACCCTCCTCCCT+CGG + chr1_4:56819903-56819922 Msa0171980:intron 65.0%
CGGCGTCGCAGTTGCTGAGA+TGG - chr1_4:56820403-56820422 None:intergenic 65.0%
CACTCCAACGCGTCTGGGGG+TGG - chr1_4:56819408-56819427 None:intergenic 70.0%
! GTGGTGGAGGCGGAGCAAGG+CGG + chr1_4:56819488-56819507 Msa0171980:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 56815790 56825795 56815790 ID=Msa0171980;Name=Msa0171980
chr1_4 mRNA 56815790 56825795 56815790 ID=Msa0171980-mRNA-1;Parent=Msa0171980;Name=Msa0171980-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.4|0.66|1|0.4|0.66|6|177|507
chr1_4 exon 56815790 56815874 56815790 ID=Msa0171980-mRNA-1:exon:17252;Parent=Msa0171980-mRNA-1
chr1_4 exon 56818725 56818901 56818725 ID=Msa0171980-mRNA-1:exon:17253;Parent=Msa0171980-mRNA-1
chr1_4 exon 56823545 56824104 56823545 ID=Msa0171980-mRNA-1:exon:17254;Parent=Msa0171980-mRNA-1
chr1_4 exon 56824428 56824649 56824428 ID=Msa0171980-mRNA-1:exon:17255;Parent=Msa0171980-mRNA-1
chr1_4 exon 56824955 56825195 56824955 ID=Msa0171980-mRNA-1:exon:17256;Parent=Msa0171980-mRNA-1
chr1_4 exon 56825380 56825795 56825380 ID=Msa0171980-mRNA-1:exon:17257;Parent=Msa0171980-mRNA-1
chr1_4 CDS 56815790 56815874 56815790 ID=Msa0171980-mRNA-1:cds;Parent=Msa0171980-mRNA-1
chr1_4 CDS 56818725 56818901 56818725 ID=Msa0171980-mRNA-1:cds;Parent=Msa0171980-mRNA-1
chr1_4 CDS 56823545 56824104 56823545 ID=Msa0171980-mRNA-1:cds;Parent=Msa0171980-mRNA-1
chr1_4 CDS 56824428 56824649 56824428 ID=Msa0171980-mRNA-1:cds;Parent=Msa0171980-mRNA-1
chr1_4 CDS 56824955 56825195 56824955 ID=Msa0171980-mRNA-1:cds;Parent=Msa0171980-mRNA-1
chr1_4 CDS 56825380 56825618 56825380 ID=Msa0171980-mRNA-1:cds;Parent=Msa0171980-mRNA-1
chr1_4 three_prime_UTR 56825619 56825795 56825619 ID=Msa0171980-mRNA-1:three_prime_utr;Parent=Msa0171980-mRNA-1
Gene Sequence

>Msa0171980

ATGAAGCACCTAGTGCAAAAGGAATATACATCACGAAAAGAAAATGAAGCTTTTTGGCCCTTAATGATTGTCCAACAGAGTGGTGAGATGGAACAAGCAGTTTTGGATGACATAATCAATCGACTCCTTGAAGTTCGTAGCCGTCCAGGGAAGCAGGTTCAGCTGTCGGAGACGGAGATCCGTCAGCTATGTTCTACTGCTAGAGAGATTTTCTTGCAGCAACCTAATTTATTGGAGCTTGAAGCACCTATTAAGATTTGTGGCGACATACATGGTCAATATTCTGATCTTCTAAGGCTTTTTGAGTATGGTGGATTACCTCCTCAGGCCAACTACTTGTTTTTGGGTGATTATGTGGATCGAGGGAAGCAAAGTTTAGAAACAATATGCCTTCTCTTAGCATATAAAATAAAGTATCCTGAGAATTTTTTTCTTTTGCGGGGAAACCATGAATGTGCTTCTATTAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGATATGGAAGGTGTTTACTGATTGCTTCAATTGCCTACCTGTGGCAGCCCTCATTGATGAAAAGATTTTGTGCATGCATGGCGGACTTTCTCCTGACTTACATAATTTGGATCAGATTAGAAACCTACAGAGGCCGACTGATGTGCCTGATACAGGTTTGCTTTGCGATCTCCTCTGGTCAGACCCTAGCAAAGAAGTTCAAGGTTGGGGAATGAATGACAGGGGAGTGTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAGCATGATTTGGATCTTATTTGCCGTGCTCATCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAACCGGCAGCTTGTAACAATATTTTCGGCGCCTAATTACTGTGGGGAGTTTGACAACGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAACAAAGCTCAATTTTGGAAGTACGACCACTACTAAACCAGGAAACTCTCCAGCAGGTGTAAAGTTTTGTGTGATTTCCATATTAACCATTTCTCACATAACTTCGGATTATTGGAATGATCTGAGATTTTATGTGTTAGTCGTGCAAGAAAGCATTTGGGGCATTGAATTTAGCAATGGAACAAACTACATACATGGAGATTTTCTACTGAGAACTCTGAAGCAGCCAAAGCCATTGGATGAATCAATTGTTTCAAATGCTCACAACATATATACAGATACTGTTGCATTCATTTTTTCTTTCATCCTTCCTTGGTACGAAAGTATGAAGTTGATTTTGGCGAAAATGGTTGCTGTCACAACTGGTCAGCGAAGGAAAGTCGAGATCCATATGTTATTTTGGAATTGTAAAAACAAAGGGAAACACCATCATGAACTATGTAGACCATTGTTTTTCACTGTTACAAATTTGTATTTTGAGATCAGACATCCCATAATCTCTTCCTTGCTTTCTTTGTACACTAATACCTGGTATATGTTCTGA
Protein sequence

>Msa0171980

MKHLVQKEYTSRKENEAFWPLMIVQQSGEMEQAVLDDIINRLLEVRSRPGKQVQLSETEIRQLCSTAREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPQANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRIWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLHNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKTKLNFGSTTTTKPGNSPAGVKFCVISILTISHITSDYWNDLRFYVLVVQESIWGIEFSNGTNYIHGDFLLRTLKQPKPLDESIVSNAHNIYTDTVAFIFSFILPWYESMKLILAKMVAVTTGQRRKVEIHMLFWNCKNKGKHHHELCRPLFFTVTNLYFEIRHPIISSLLSLYTNTWYMF*