AlfalfaGEDB | Msa0651020

M. sativa cultivar zhongmu-4 / Msa0651020

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651020	AES90030.2	85.443	158	20	1	13	167	36	193	2.14e-91	274

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651020	sp\|Q7XLP4\|Y4869_ORYSJ	37.121	132	78	3	39	167	83	212	3.48e-23	94.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651020	G7JHL3	85.443	158	20	1	13	167	36	193	1.02e-91	274

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TFs/TRs:

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Gene ID	Type	Classification
Msa0651020	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0610320	Msa0651020	0.888390	6.158013e-73	-8.615850e-47
Msa0651020	Msa0693070	0.807556	4.771124e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651020	MtrunA17_Chr4g0043351	86.452	155	18	1	16	167	8	162	4.30e-95	272

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 74 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGGAAAATACAG+AGG	0.630802	4_3:+58302805	None:intergenic
AAAGAAAAGGAAAATACAGA+GGG	0.564283	4_3:+58302806	None:intergenic
AAATGGTGCATCCCTCTCAC+CGG	0.578086	4_3:+58301957	None:intergenic
AACCTTGAACAATCCCACAA+AGG	0.707964	4_3:+58301852	None:intergenic
AACTGTTTGATAGCGTTGGC+TGG	0.415821	4_3:-58302125	Msa0651020:CDS
AAGATTAACTTTCATGTACA+CGG	0.643809	4_3:-58302547	Msa0651020:exon
AAGCAATATGTTTCTCTGAT+TGG	0.332487	4_3:+58301712	None:intergenic
AAGTATGGCACTCCTGAAAG+CGG	0.678549	4_3:+58302411	None:intergenic
AAGTTGTCGGTGATGGTGGT+TGG	0.562351	4_3:+58302776	None:intergenic
AATTTCCTGGAACCGGTGAG+AGG	0.633829	4_3:-58301969	Msa0651020:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTACATGAAAGTTAATCT+TGG	+	chr4_3:58301964-58301983	None:intergenic	30.0%
TGAAATTACCAATCCATAAC+GGG	+	chr4_3:58302157-58302176	None:intergenic	30.0%
GTATTGTATTGTTGGCATAT+AGG	-	chr4_3:58302254-58302273	Msa0651020:intron	30.0%
ATTGTATTGTTGGCATATAG+GGG	-	chr4_3:58302256-58302275	Msa0651020:intron	30.0%
TTCCGACTATTCTCAAATAT+CGG	-	chr4_3:58302319-58302338	Msa0651020:intron	30.0%
GGAAATTCGTAAAGCAAAAA+TGG	+	chr4_3:58302528-58302547	None:intergenic	30.0%
AAGCAATATGTTTCTCTGAT+TGG	+	chr4_3:58302801-58302820	None:intergenic	30.0%
GTGTACATGAAAGTTAATCT+TGG	+	chr4_3:58301964-58301983	None:intergenic	30.0%
TGAAATTACCAATCCATAAC+GGG	+	chr4_3:58302157-58302176	None:intergenic	30.0%
GTATTGTATTGTTGGCATAT+AGG	-	chr4_3:58302254-58302273	Msa0651020:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	58301679	58302853	58301679	ID=Msa0651020;Name=Msa0651020
chr4_3	mRNA	58301679	58302853	58301679	ID=Msa0651020-mRNA-1;Parent=Msa0651020;Name=Msa0651020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=297\|1\|1\|1\|1\|1\|2\|266\|167
chr4_3	exon	58301679	58302256	58301679	ID=Msa0651020-mRNA-1:exon:15447;Parent=Msa0651020-mRNA-1
chr4_3	exon	58302365	58302853	58302365	ID=Msa0651020-mRNA-1:exon:15446;Parent=Msa0651020-mRNA-1
chr4_3	five_prime_UTR	58302557	58302853	58302557	ID=Msa0651020-mRNA-1:five_prime_utr;Parent=Msa0651020-mRNA-1
chr4_3	CDS	58302365	58302556	58302365	ID=Msa0651020-mRNA-1:cds;Parent=Msa0651020-mRNA-1
chr4_3	CDS	58301945	58302256	58301945	ID=Msa0651020-mRNA-1:cds;Parent=Msa0651020-mRNA-1
chr4_3	three_prime_UTR	58301679	58301944	58301679	ID=Msa0651020-mRNA-1:three_prime_utr;Parent=Msa0651020-mRNA-1

Gene Sequence

>Msa0651020

ATGTACACGGTCGGTCTATCACTAATTTCACATTTATTTTCAGTGAGTAGCAGTCAAGTTGCTGTGGGAAATCCAGCCTCGTTATCATCACCTTCGACAAATATGCAAACGGATGGAATTGAACCGCTTTCAGGAGTGCCATACTTTCATGTGGTCCTTTCCAAAACACATCTTAGTCCCCGTTATGGATTGGGGCCGAGCAGCAGCATATGTGAAGAACTTCCTTCCAAATCGGTTCCGACTATTCTCAAATATCGGGGTAAGAGTTGGGCCACGACTTATAATGGGCAGAACAAAACCAAACTGTTTGATAGCGTTGGCTGGGAAAAATTTGCTGAAGATAATTATTTGAAGCTTGGAGACGCTTGTGTTTTTGAGCTCATGAAAAACAGTGAAGAGGAAATCGTCTTCAAAGTTCAAATTCTTAGAGGTGAAGAAGAGCCATTTTTGCTTTACGAATTTCCTGGAACCGGTGAGAGGGATGCACCATTTGTCATAGATTAG

Protein sequence

>Msa0651020

MYTVGLSLISHLFSVSSSQVAVGNPASLSSPSTNMQTDGIEPLSGVPYFHVVLSKTHLSPRYGLGPSSSICEELPSKSVPTILKYRGKSWATTYNGQNKTKLFDSVGWEKFAEDNYLKLGDACVFELMKNSEEEIVFKVQILRGEEEPFLLYEFPGTGERDAPFVID*