Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654590 | XP_003608320.1 | 98.824 | 425 | 4 | 1 | 1 | 424 | 1 | 425 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654590 | sp|Q9ZQR4|Y2452_ARATH | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0654590 | Msa1381890 | 0.985808 | 9.841261e-165 | -8.615850e-47 |
| Msa0654590 | Msa1412780 | 0.984971 | 3.881269e-162 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654590 | MtrunA17_Chr4g0049251 | 98.824 | 425 | 4 | 1 | 1 | 424 | 1 | 425 | 0.0 | 854 |
| Msa0654590 | MtrunA17_Chr2g0280251 | 81.163 | 430 | 74 | 3 | 1 | 424 | 1 | 429 | 0.0 | 676 |
| Msa0654590 | MtrunA17_Chr3g0141551 | 56.206 | 427 | 180 | 4 | 1 | 420 | 1 | 427 | 6.58e-165 | 473 |
| Msa0654590 | MtrunA17_Chr4g0065751 | 55.687 | 422 | 158 | 6 | 12 | 422 | 35 | 438 | 3.36e-156 | 450 |
| Msa0654590 | MtrunA17_Chr6g0467811 | 55.556 | 405 | 151 | 6 | 21 | 422 | 40 | 418 | 4.11e-149 | 431 |
| Msa0654590 | MtrunA17_Chr6g0469911 | 48.585 | 424 | 197 | 4 | 7 | 422 | 29 | 439 | 2.80e-136 | 399 |
| Msa0654590 | MtrunA17_Chr7g0259621 | 52.058 | 413 | 187 | 6 | 12 | 418 | 35 | 442 | 9.82e-136 | 397 |
| Msa0654590 | MtrunA17_Chr6g0469771 | 55.036 | 278 | 125 | 0 | 4 | 281 | 5 | 282 | 1.39e-111 | 329 |
| Msa0654590 | MtrunA17_Chr7g0217521 | 54.789 | 261 | 117 | 1 | 21 | 281 | 44 | 303 | 2.94e-96 | 291 |
| Msa0654590 | MtrunA17_Chr7g0217531 | 40.411 | 146 | 64 | 5 | 279 | 418 | 4 | 132 | 1.97e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654590 | AT2G14520.4 | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Msa0654590 | AT2G14520.1 | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Msa0654590 | AT2G14520.2 | 78.960 | 423 | 82 | 3 | 1 | 423 | 1 | 416 | 0.0 | 673 |
| Msa0654590 | AT4G33700.1 | 78.454 | 427 | 86 | 3 | 1 | 424 | 1 | 424 | 0.0 | 672 |
| Msa0654590 | AT2G14520.3 | 77.353 | 340 | 76 | 1 | 84 | 423 | 1 | 339 | 0.0 | 536 |
| Msa0654590 | AT4G33700.3 | 77.035 | 344 | 73 | 3 | 84 | 424 | 1 | 341 | 0.0 | 530 |
| Msa0654590 | AT4G33700.2 | 84.342 | 281 | 44 | 0 | 1 | 281 | 1 | 281 | 1.64e-172 | 484 |
| Msa0654590 | AT1G47330.1 | 53.968 | 441 | 180 | 4 | 1 | 420 | 1 | 439 | 2.90e-162 | 467 |
| Msa0654590 | AT5G52790.4 | 55.319 | 423 | 154 | 4 | 2 | 422 | 3 | 392 | 1.03e-158 | 454 |
| Msa0654590 | AT5G52790.1 | 55.319 | 423 | 154 | 4 | 2 | 422 | 3 | 392 | 1.12e-157 | 455 |
| Msa0654590 | AT5G52790.3 | 54.988 | 411 | 150 | 4 | 2 | 410 | 3 | 380 | 3.35e-152 | 437 |
| Msa0654590 | AT5G52790.2 | 54.988 | 411 | 150 | 4 | 2 | 410 | 3 | 380 | 3.35e-152 | 437 |
| Msa0654590 | AT5G52790.5 | 54.722 | 413 | 152 | 4 | 2 | 412 | 3 | 382 | 1.74e-151 | 437 |
| Msa0654590 | AT4G14240.1 | 54.306 | 418 | 165 | 6 | 11 | 422 | 34 | 431 | 7.51e-145 | 422 |
| Msa0654590 | AT4G14230.1 | 51.816 | 413 | 185 | 5 | 11 | 422 | 33 | 432 | 2.20e-141 | 413 |
| Msa0654590 | AT1G03270.1 | 53.081 | 422 | 170 | 7 | 12 | 422 | 33 | 437 | 1.14e-139 | 409 |
| Msa0654590 | AT4G14240.2 | 53.110 | 418 | 161 | 7 | 11 | 422 | 34 | 422 | 1.21e-136 | 400 |
| Msa0654590 | AT1G47330.2 | 50.975 | 359 | 153 | 3 | 83 | 420 | 2 | 358 | 1.40e-120 | 358 |
| Msa0654590 | AT4G14240.3 | 53.179 | 346 | 136 | 6 | 83 | 422 | 2 | 327 | 1.21e-111 | 333 |
| Msa0654590 | AT3G13070.1 | 27.559 | 254 | 156 | 9 | 72 | 312 | 226 | 464 | 1.16e-13 | 73.6 |
| Msa0654590 | AT1G55930.1 | 27.843 | 255 | 154 | 10 | 72 | 312 | 221 | 459 | 1.28e-13 | 73.2 |
| Msa0654590 | AT1G55930.2 | 28.063 | 253 | 152 | 10 | 74 | 312 | 223 | 459 | 1.73e-13 | 72.8 |
Find 114 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACATCAGTAATGAAATTT+AGG | 0.132855 | 4_3:-62767483 | Msa0654590:three_prime_UTR |
| CTATTCGACTTGTTCGTATT+TGG | 0.137170 | 4_3:+62767937 | None:intergenic |
| GAGCAGTCTACTAACATTAT+TGG | 0.167034 | 4_3:-62770282 | Msa0654590:CDS |
| TCTTCTTCTTCAGGGATATT+TGG | 0.182695 | 4_3:+62767844 | None:intergenic |
| ACGAAATGTTCTCGCGAAAT+AGG | 0.201542 | 4_3:+62767307 | None:intergenic |
| ATAATTAGATAATGCGGTTT+AGG | 0.230773 | 4_3:-62767567 | Msa0654590:three_prime_UTR |
| GGTACACTAATGTGTCTTTA+AGG | 0.244640 | 4_3:-62767406 | Msa0654590:three_prime_UTR |
| CCAACAGCTTCTTCTTCTTC+AGG | 0.246006 | 4_3:+62767835 | None:intergenic |
| CATATTGGTTATCATCTTCT+TGG | 0.246562 | 4_3:-62772312 | Msa0654590:CDS |
| TCATACAGCGGCATACTTTC+TGG | 0.250177 | 4_3:+62768277 | None:intergenic |
| CAATCAGTTTGTTCTCGATA+TGG | 0.266595 | 4_3:-62771085 | Msa0654590:CDS |
| GTCACGTTGATTCTTCTCTT+TGG | 0.274630 | 4_3:-62771388 | Msa0654590:CDS |
| CGTATGGTTACACTCTTTAC+AGG | 0.295718 | 4_3:+62768443 | None:intergenic |
| TAATTAGATAATGCGGTTTA+GGG | 0.299088 | 4_3:-62767566 | Msa0654590:three_prime_UTR |
| ATGTATGTCACCTTGCTAAT+TGG | 0.301980 | 4_3:+62770992 | None:intergenic |
| TTTACAGGCGATTCATCTTC+TGG | 0.305252 | 4_3:+62768458 | None:intergenic |
| ATAGTTGATACCTACTTGTT+TGG | 0.306426 | 4_3:-62767338 | Msa0654590:three_prime_UTR |
| GTGGCGTGTGTTGTGGTAGA+TGG | 0.308908 | 4_3:+62772514 | None:intergenic |
| CCAGTTGTTAGACTATTTGC+TGG | 0.312154 | 4_3:-62770864 | Msa0654590:intron |
| TGATAGTCTTGTTACTGCTT+GGG | 0.319831 | 4_3:-62771428 | Msa0654590:CDS |
| GAAAAGTAGTTAGAGTTTAG+TGG | 0.336161 | 4_3:+62772495 | None:intergenic |
| GGAACTGATGACTGAAATAT+TGG | 0.341934 | 4_3:-62770337 | Msa0654590:CDS |
| TTGATAGTCTTGTTACTGCT+TGG | 0.343981 | 4_3:-62771429 | Msa0654590:CDS |
| AACATCAGTAATGAAATTTA+GGG | 0.345408 | 4_3:-62767482 | Msa0654590:three_prime_UTR |
| CAAATACGAACAAGTCGAAT+AGG | 0.348065 | 4_3:-62767936 | Msa0654590:CDS |
| TAACATTATTGGATTAATAC+TGG | 0.362806 | 4_3:-62770271 | Msa0654590:intron |
| GGAGTTCTTCATCCACATAT+TGG | 0.363983 | 4_3:-62772327 | Msa0654590:CDS |
| ATAGCAAATGTTTCAGATAT+AGG | 0.364291 | 4_3:+62770473 | None:intergenic |
| AAATACGAACAAGTCGAATA+GGG | 0.365943 | 4_3:-62767935 | Msa0654590:CDS |
| TCAACTCGGCTCTACGGAAA+AGG | 0.383543 | 4_3:+62770825 | None:intergenic |
| CTTGAAGTTCTTGCTAAGTC+TGG | 0.388705 | 4_3:-62772227 | Msa0654590:CDS |
| TTGCTAATTGGAAAAGCAAC+TGG | 0.400425 | 4_3:+62771004 | None:intergenic |
| ATCTTCTTGGTGGTCTTCGC+CGG | 0.401529 | 4_3:-62772299 | Msa0654590:CDS |
| GATGAAACAACAATAATTGC+CGG | 0.410016 | 4_3:-62770539 | Msa0654590:CDS |
| CAACAGCTTCTTCTTCTTCA+GGG | 0.421642 | 4_3:+62767836 | None:intergenic |
| TGGGTTTCAAGACTTTCTCT+TGG | 0.427213 | 4_3:+62767989 | None:intergenic |
| CATTTGCAATGCCGCCGCCA+TGG | 0.428491 | 4_3:-62771950 | Msa0654590:CDS |
| TTCTGTGAGAGAGGTGAAGG+TGG | 0.428661 | 4_3:-62768034 | Msa0654590:CDS |
| ATATTAATTCGAAGCTTGAT+AGG | 0.428680 | 4_3:-62770448 | Msa0654590:intron |
| ATATCGAGAACAAACTGATT+GGG | 0.432835 | 4_3:+62771087 | None:intergenic |
| TTAATGTCCGGACTCACCTT+AGG | 0.436067 | 4_3:-62772275 | Msa0654590:CDS |
| AGAGAAAGTGTGAATGGCGG+TGG | 0.439640 | 4_3:-62772369 | Msa0654590:exon |
| GAATCAACGTGACTGAAATC+AGG | 0.439998 | 4_3:+62771398 | None:intergenic |
| AGTTTGTTCTCGATATGGTT+TGG | 0.445684 | 4_3:-62771080 | Msa0654590:CDS |
| ATTGGTTATCATCTTCTTGG+TGG | 0.446975 | 4_3:-62772309 | Msa0654590:CDS |
| TCTCGATATGGTTTGGCCAT+TGG | 0.452760 | 4_3:-62771073 | Msa0654590:CDS |
| CATATCGAGAACAAACTGAT+TGG | 0.460455 | 4_3:+62771086 | None:intergenic |
| GGTGAGTCCGGACATTAAAC+CGG | 0.461990 | 4_3:+62772280 | None:intergenic |
| CAACTCGGCTCTACGGAAAA+GGG | 0.462073 | 4_3:+62770826 | None:intergenic |
| AAATGCTGATTTCTCACAAC+AGG | 0.462976 | 4_3:+62771991 | None:intergenic |
| GTCTTCGCCGGTTTAATGTC+CGG | 0.465784 | 4_3:-62772287 | Msa0654590:CDS |
| CATACAAGCACGCGGACAAA+AGG | 0.470475 | 4_3:+62771037 | None:intergenic |
| TTGTATTAGGCTGGAAAAGG+TGG | 0.472607 | 4_3:-62770575 | Msa0654590:intron |
| AGATTCTGTGAGAGAGGTGA+AGG | 0.479457 | 4_3:-62768037 | Msa0654590:CDS |
| TTCAAGACTTTCTCTTGGAG+AGG | 0.484352 | 4_3:+62767994 | None:intergenic |
| GGGGTTCTCGGAGCAGAAAA+TGG | 0.486966 | 4_3:-62767915 | Msa0654590:CDS |
| CTTCTTCAGGGATATTTGGA+AGG | 0.495785 | 4_3:+62767848 | None:intergenic |
| ACAAGTCGAATAGGGGTTCT+CGG | 0.497243 | 4_3:-62767927 | Msa0654590:CDS |
| CAGTTGTTAGACTATTTGCT+GGG | 0.503149 | 4_3:-62770863 | Msa0654590:CDS |
| GGAATACACATGCTGCGAAT+CGG | 0.507074 | 4_3:-62772348 | Msa0654590:CDS |
| GAATTGTATTAGGCTGGAAA+AGG | 0.507317 | 4_3:-62770578 | Msa0654590:intron |
| CCAAGATACCAATCCAAAAG+TGG | 0.512266 | 4_3:-62767969 | Msa0654590:CDS |
| GTAGACTGCTCATAAAAGAC+TGG | 0.512510 | 4_3:+62770294 | None:intergenic |
| ATGAAACAACAATAATTGCC+GGG | 0.518788 | 4_3:-62770538 | Msa0654590:CDS |
| TGTATTAGGCTGGAAAAGGT+GGG | 0.520587 | 4_3:-62770574 | Msa0654590:intron |
| TTCTTCAGGGATATTTGGAA+GGG | 0.520911 | 4_3:+62767849 | None:intergenic |
| CATGAGACCTAAGGTGAGTC+CGG | 0.527621 | 4_3:+62772268 | None:intergenic |
| GATAGTCTTGTTACTGCTTG+GGG | 0.531398 | 4_3:-62771427 | Msa0654590:CDS |
| TAAAATAGATTCTGTGAGAG+AGG | 0.536381 | 4_3:-62768043 | Msa0654590:intron |
| CCTGAAGAAGAAGAAGCTGT+TGG | 0.542971 | 4_3:-62767835 | Msa0654590:CDS |
| AGTAGATTTGCATGGTAATG+AGG | 0.545332 | 4_3:-62770795 | Msa0654590:intron |
| ATGACTGAAATATTGGAGAA+AGG | 0.546165 | 4_3:-62770330 | Msa0654590:CDS |
| AGAAGATGATAACCAATATG+TGG | 0.546494 | 4_3:+62772315 | None:intergenic |
| TGAGGCATGCCAGCAAATCA+TGG | 0.553917 | 4_3:-62767380 | Msa0654590:three_prime_UTR |
| GAGGTGAAGGTGGATATTGA+TGG | 0.556091 | 4_3:-62768024 | Msa0654590:CDS |
| TATAGGAGTCATAGCATCAC+TGG | 0.563065 | 4_3:+62770490 | None:intergenic |
| AGGAGTGACTGATGCACCAA+TGG | 0.564195 | 4_3:+62771057 | None:intergenic |
| GGAATGTAATCCAAACAAGT+AGG | 0.566031 | 4_3:+62767328 | None:intergenic |
| GAAACAAATGAAGTCGGTGA+TGG | 0.567511 | 4_3:-62772420 | Msa0654590:five_prime_UTR |
| GAAGAGAGAGAAAGTGTGAA+TGG | 0.568383 | 4_3:-62772375 | Msa0654590:exon |
| GTTGATTCTTCTCTTTGGTG+AGG | 0.574660 | 4_3:-62771383 | Msa0654590:intron |
| TAACCATACGCAGGATTCCA+AGG | 0.576381 | 4_3:-62768430 | Msa0654590:intron |
| TAGTAGTACCTCCATGGCGG+CGG | 0.577933 | 4_3:+62771939 | None:intergenic |
| CTCACTGAGTTCAAGTGCCC+CGG | 0.578508 | 4_3:+62770520 | None:intergenic |
| GAGTTTAGTGGCGTGTGTTG+TGG | 0.578971 | 4_3:+62772507 | None:intergenic |
| TCTTCAGGGATATTTGGAAG+GGG | 0.580165 | 4_3:+62767850 | None:intergenic |
| TGATGTTCTAATCACACCTC+AGG | 0.580514 | 4_3:+62767498 | None:intergenic |
| ATACCTTGGAATCCTGCGTA+TGG | 0.590163 | 4_3:+62768427 | None:intergenic |
| ACTGAGAGACATGAGACCTA+AGG | 0.612493 | 4_3:+62772259 | None:intergenic |
| AATACGAACAAGTCGAATAG+GGG | 0.612720 | 4_3:-62767934 | Msa0654590:CDS |
| AAAACACTAGTAGATTTGCA+TGG | 0.612993 | 4_3:-62770803 | Msa0654590:CDS |
| AAATAAGAAACAAATGAAGT+CGG | 0.619536 | 4_3:-62772426 | Msa0654590:five_prime_UTR |
| ACATTTCGTGAATTTGACCA+AGG | 0.620717 | 4_3:-62767293 | Msa0654590:three_prime_UTR |
| AAGAGGTAGTAGTACCTCCA+TGG | 0.621063 | 4_3:+62771933 | None:intergenic |
| CAATAGATAATTAGATAATG+CGG | 0.621446 | 4_3:-62767573 | Msa0654590:three_prime_UTR |
| AGCTGTTGGAATAATTACAA+TGG | 0.624823 | 4_3:-62767821 | Msa0654590:CDS |
| ATCGCATTGTCGTACAACAA+CGG | 0.629829 | 4_3:+62768216 | None:intergenic |
| TGTTGGAATAATTACAATGG+AGG | 0.632047 | 4_3:-62767818 | Msa0654590:CDS |
| TATCGAGAACAAACTGATTG+GGG | 0.632512 | 4_3:+62771088 | None:intergenic |
| TAGACTGCTCATAAAAGACT+GGG | 0.648315 | 4_3:+62770295 | None:intergenic |
| GTATTAGGCTGGAAAAGGTG+GGG | 0.650287 | 4_3:-62770573 | Msa0654590:intron |
| TCAGAAGGGGCATAGTCACA+TGG | 0.652219 | 4_3:-62768239 | Msa0654590:CDS |
| GTGATGGAACTCATCTGAAG+CGG | 0.654741 | 4_3:-62772404 | Msa0654590:five_prime_UTR |
| CCGGCGTGTTTACGATCGTG+AGG | 0.657033 | 4_3:+62772200 | None:intergenic |
| AATGTGTCTTTAAGGCAATG+AGG | 0.660021 | 4_3:-62767398 | Msa0654590:three_prime_UTR |
| TAAAGAGTGTAACCATACGC+AGG | 0.665814 | 4_3:-62768439 | Msa0654590:CDS |
| TTGCAATGCCGCCGCCATGG+AGG | 0.672226 | 4_3:-62771947 | Msa0654590:intron |
| AGCTGCTGTTTAGATATCTG+AGG | 0.672963 | 4_3:-62767539 | Msa0654590:three_prime_UTR |
| TGAAACAACAATAATTGCCG+GGG | 0.673538 | 4_3:-62770537 | Msa0654590:CDS |
| GAGAGAGAAAGTGTGAATGG+CGG | 0.680617 | 4_3:-62772372 | Msa0654590:exon |
| TCATTCAAAATGTCATACAG+CGG | 0.722071 | 4_3:+62768265 | None:intergenic |
| AACATATCCATACAAGCACG+CGG | 0.727396 | 4_3:+62771029 | None:intergenic |
| AGGTAGTAGTACCTCCATGG+CGG | 0.742514 | 4_3:+62771936 | None:intergenic |
| CCTCACGATCGTAAACACGC+CGG | 0.756533 | 4_3:-62772200 | Msa0654590:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCCAATAAATAAAAT+TGG | + | chr4_3:62767689-62767708 | None:intergenic | 10.0% |
| !!! | TGAATTTTTATTAAAAAAGA+AGG | + | chr4_3:62769671-62769690 | None:intergenic | 10.0% |
| !!! | TTTTTAATAAAAATTCAATG+TGG | - | chr4_3:62769674-62769693 | Msa0654590:intron | 10.0% |
| !!! | TTATGCATTTATTATTGATT+TGG | - | chr4_3:62767741-62767760 | Msa0654590:intron | 15.0% |
| !! | AATAAGCTTAAAATAGATTA+TGG | + | chr4_3:62767933-62767952 | None:intergenic | 15.0% |
| !!! | TGATTATGTATAACTATTTT+TGG | + | chr4_3:62768107-62768126 | None:intergenic | 15.0% |
| !!! | AGCTTTAATACTTTTTATAT+TGG | - | chr4_3:62768566-62768585 | Msa0654590:intron | 15.0% |
| !!! | TACTTTTATTTGAATAAACA+AGG | - | chr4_3:62768849-62768868 | Msa0654590:intron | 15.0% |
| !! | TTTAATTGCAAAAATAACTT+TGG | + | chr4_3:62771004-62771023 | None:intergenic | 15.0% |
| !!! | AAATAAATAATGTAGTTTTG+AGG | + | chr4_3:62771064-62771083 | None:intergenic | 15.0% |
| !! | AAAAAATATAGAGAAAAGAA+TGG | + | chr4_3:62771193-62771212 | None:intergenic | 15.0% |
| !!! | TCATTTGTTTCTTATTTAAG+AGG | + | chr4_3:62767373-62767392 | None:intergenic | 20.0% |
| !! | AAATAAGAAACAAATGAAGT+CGG | - | chr4_3:62767376-62767395 | Msa0654590:three_prime_UTR | 20.0% |
| !! | CCAATAAATAAAATTGGATA+CGG | + | chr4_3:62767683-62767702 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAAATCTTC+AGG | - | chr4_3:62767947-62767966 | Msa0654590:CDS | 20.0% |
| !! | AATTTGTCTTCAATAAAAGA+GGG | + | chr4_3:62768081-62768100 | None:intergenic | 20.0% |
| !!! | TAATTTGTCTTCAATAAAAG+AGG | + | chr4_3:62768082-62768101 | None:intergenic | 20.0% |
| !! | ATTTGTATGTTGTTCTTATA+TGG | - | chr4_3:62768188-62768207 | Msa0654590:CDS | 20.0% |
| !! | TCAATACTAATATTCAAAGA+AGG | - | chr4_3:62768220-62768239 | Msa0654590:CDS | 20.0% |
| !! | AATATTCAAAGAAGGTTATA+TGG | - | chr4_3:62768228-62768247 | Msa0654590:CDS | 20.0% |
| !! | TATTTCAGTTGAAACATATA+GGG | + | chr4_3:62768459-62768478 | None:intergenic | 20.0% |
| !!! | TTTTATTTGAATAAACAAGG+AGG | - | chr4_3:62768852-62768871 | Msa0654590:intron | 20.0% |
| !! | TAACATTATTGGATTAATAC+TGG | - | chr4_3:62769531-62769550 | Msa0654590:intron | 20.0% |
| !!! | TCTTAATAACCAGATATTTT+AGG | - | chr4_3:62770013-62770032 | Msa0654590:intron | 20.0% |
| !!! | CTTAATAACCAGATATTTTA+GGG | - | chr4_3:62770014-62770033 | Msa0654590:intron | 20.0% |
| !! | TAGGGAATTGAATAAATTAT+TGG | - | chr4_3:62770032-62770051 | Msa0654590:intron | 20.0% |
| !! | TAATTAGAGGAGATATTATA+GGG | + | chr4_3:62770238-62770257 | None:intergenic | 20.0% |
| !! | TTAATTAGAGGAGATATTAT+AGG | + | chr4_3:62770239-62770258 | None:intergenic | 20.0% |
| !!! | AATTAATATTTTCTCCTGTT+AGG | - | chr4_3:62770253-62770272 | Msa0654590:intron | 20.0% |
| !! | GATATAGCAGATAAAATAAT+TGG | - | chr4_3:62770846-62770865 | Msa0654590:CDS | 20.0% |
| !!! | TACATTATTTATTTTCTCGT+TGG | - | chr4_3:62771070-62771089 | Msa0654590:CDS | 20.0% |
| !!! | ACATTATTTATTTTCTCGTT+GGG | - | chr4_3:62771071-62771090 | Msa0654590:CDS | 20.0% |
| !!! | TTGGTACTATTTTATATGTT+AGG | - | chr4_3:62771155-62771174 | Msa0654590:intron | 20.0% |
| !! | TTAAACAAGTGTTCAAATTA+TGG | + | chr4_3:62771483-62771502 | None:intergenic | 20.0% |
| !! | TTAAAATTACATATGTTGAC+AGG | - | chr4_3:62771499-62771518 | Msa0654590:intron | 20.0% |
| !! | TAAAATTACATATGTTGACA+GGG | - | chr4_3:62771500-62771519 | Msa0654590:intron | 20.0% |
| !!! | ATATTTTAATTAGATCTCGT+TGG | - | chr4_3:62771691-62771710 | Msa0654590:intron | 20.0% |
| !! | CAATAGATAATTAGATAATG+CGG | - | chr4_3:62772229-62772248 | Msa0654590:CDS | 20.0% |
| !! | AACATCAGTAATGAAATTTA+GGG | - | chr4_3:62772320-62772339 | Msa0654590:CDS | 20.0% |
| !!! | TGGAGTTTTTTAATATTAGC+TGG | + | chr4_3:62767271-62767290 | None:intergenic | 25.0% |
| !!! | CCGTATCCAATTTTATTTAT+TGG | - | chr4_3:62767680-62767699 | Msa0654590:intron | 25.0% |
| ! | TCAAAAAAATCGATGAAAAG+AGG | + | chr4_3:62767889-62767908 | None:intergenic | 25.0% |
| ! | CATGCGATTTCAATAAAAAA+GGG | + | chr4_3:62768058-62768077 | None:intergenic | 25.0% |
| ! | ATTCGTGTAATATTCAAAGA+AGG | - | chr4_3:62768148-62768167 | Msa0654590:intron | 25.0% |
| ! | CTTTGTATGTTGTTCTTATA+TGG | - | chr4_3:62768297-62768316 | Msa0654590:intron | 25.0% |
| ! | ACAAGACTATCAAGAAAAAT+AGG | + | chr4_3:62768366-62768385 | None:intergenic | 25.0% |
| ! | GTATTTCAGTTGAAACATAT+AGG | + | chr4_3:62768460-62768479 | None:intergenic | 25.0% |
| ! | TGTATATCATGTTATCTTGA+TGG | - | chr4_3:62768481-62768500 | Msa0654590:CDS | 25.0% |
| ! | AGAGATCCTTGAAAATTTAT+GGG | + | chr4_3:62768517-62768536 | None:intergenic | 25.0% |
| ! | ATACAAGAACACTAAGATAT+AGG | + | chr4_3:62768642-62768661 | None:intergenic | 25.0% |
| ! | ACTGAGAAGAAAAGAAAAAT+AGG | + | chr4_3:62768898-62768917 | None:intergenic | 25.0% |
| ! | GTTCATGATTGAATTGTATT+AGG | - | chr4_3:62769214-62769233 | Msa0654590:intron | 25.0% |
| ! | ATAGCAAATGTTTCAGATAT+AGG | + | chr4_3:62769332-62769351 | None:intergenic | 25.0% |
| ! | ATATTAATTCGAAGCTTGAT+AGG | - | chr4_3:62769354-62769373 | Msa0654590:intron | 25.0% |
| ! | TTTGATCGAACAGTAAAAAA+TGG | + | chr4_3:62769736-62769755 | None:intergenic | 25.0% |
| ! | TGAAATGGTATTATCTAGTA+TGG | + | chr4_3:62769949-62769968 | None:intergenic | 25.0% |
| ! | TACTAGATAATACCATTTCA+TGG | - | chr4_3:62769949-62769968 | Msa0654590:intron | 25.0% |
| ! | ATAATACCATTTCATGGAAT+TGG | - | chr4_3:62769955-62769974 | Msa0654590:intron | 25.0% |
| ! | ATTCAATTCCCTAAAATATC+TGG | + | chr4_3:62770025-62770044 | None:intergenic | 25.0% |
| ! | AAGAAAATAAACAAATGCTG+TGG | - | chr4_3:62770107-62770126 | Msa0654590:intron | 25.0% |
| ! | TATATGTAAACTTTCTACCT+TGG | - | chr4_3:62770202-62770221 | Msa0654590:intron | 25.0% |
| ! | ATATGTAAACTTTCTACCTT+GGG | - | chr4_3:62770203-62770222 | Msa0654590:intron | 25.0% |
| ! | CAGGAGAAAATATTAATTAG+AGG | + | chr4_3:62770251-62770270 | None:intergenic | 25.0% |
| ! | TAGAAAATAAGATTCCTAAC+AGG | + | chr4_3:62770270-62770289 | None:intergenic | 25.0% |
| ! | TATCTTAACACAGTCTAAAA+TGG | + | chr4_3:62770319-62770338 | None:intergenic | 25.0% |
| ! | AGATGGAAATAATGTTTCTT+AGG | - | chr4_3:62770426-62770445 | Msa0654590:intron | 25.0% |
| ! | AGCAAGAAAAGTCATTTATA+TGG | - | chr4_3:62770551-62770570 | Msa0654590:CDS | 25.0% |
| !!! | TTAAGAGTGTTATTTGGTTA+TGG | + | chr4_3:62770744-62770763 | None:intergenic | 25.0% |
| ! | ATAACCAAATAACACTCTTA+AGG | - | chr4_3:62770743-62770762 | Msa0654590:intron | 25.0% |
| ! | TACACAAGTCATAATATACA+AGG | - | chr4_3:62770890-62770909 | Msa0654590:intron | 25.0% |
| ! | ACACAAGTCATAATATACAA+GGG | - | chr4_3:62770891-62770910 | Msa0654590:intron | 25.0% |
| ! | AAATAAAGAATGCATGATGT+AGG | + | chr4_3:62771118-62771137 | None:intergenic | 25.0% |
| ! | GCACATATTCAGAAATTAAA+AGG | + | chr4_3:62771287-62771306 | None:intergenic | 25.0% |
| !!! | GTACATTATGAAACTTGTTA+CGG | + | chr4_3:62771442-62771461 | None:intergenic | 25.0% |
| ! | AGTTTCATAATGTACTTAGT+TGG | - | chr4_3:62771447-62771466 | Msa0654590:CDS | 25.0% |
| !! | ATTTTGAATGAGTTTCAGAA+GGG | - | chr4_3:62771549-62771568 | Msa0654590:intron | 25.0% |
| !!! | TTTGAATCATTTTTGGAAGA+TGG | + | chr4_3:62771624-62771643 | None:intergenic | 25.0% |
| ! | TCTTCCAAAAATGATTCAAA+TGG | - | chr4_3:62771624-62771643 | Msa0654590:intron | 25.0% |
| !! | CTTACCATTTGAATCATTTT+TGG | + | chr4_3:62771631-62771650 | None:intergenic | 25.0% |
| !!! | TCAGATATTTTAGAGATAGA+TGG | - | chr4_3:62771925-62771944 | Msa0654590:intron | 25.0% |
| ! | ATAATTAGATAATGCGGTTT+AGG | - | chr4_3:62772235-62772254 | Msa0654590:CDS | 25.0% |
| ! | TAATTAGATAATGCGGTTTA+GGG | - | chr4_3:62772236-62772255 | Msa0654590:CDS | 25.0% |
| ! | GAACATCAGTAATGAAATTT+AGG | - | chr4_3:62772319-62772338 | Msa0654590:CDS | 25.0% |
| !!! | TTTCTTTTTAGAGATGTATG+CGG | - | chr4_3:62772375-62772394 | Msa0654590:exon | 25.0% |
| !! | AAAAATATACCATGATTTGC+TGG | + | chr4_3:62772434-62772453 | None:intergenic | 25.0% |
| GAAAAGTAGTTAGAGTTTAG+TGG | + | chr4_3:62767310-62767329 | None:intergenic | 30.0% | |
| AGAAGATGATAACCAATATG+TGG | + | chr4_3:62767490-62767509 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATCATCTTCT+TGG | - | chr4_3:62767490-62767509 | Msa0654590:three_prime_UTR | 30.0% |
| GCATGCGATTTCAATAAAAA+AGG | + | chr4_3:62768059-62768078 | None:intergenic | 30.0% | |
| CAGTATTCAATAGTATTCGA+AGG | - | chr4_3:62768254-62768273 | Msa0654590:CDS | 30.0% | |
| TATTCAATAGTATTCGAAGG+AGG | - | chr4_3:62768257-62768276 | Msa0654590:CDS | 30.0% | |
| GGATTTAGTATTCAAAACCA+TGG | - | chr4_3:62768318-62768337 | Msa0654590:intron | 30.0% | |
| GAGAGATCCTTGAAAATTTA+TGG | + | chr4_3:62768518-62768537 | None:intergenic | 30.0% | |
| TGTATATCATTTCCTGACAA+AGG | - | chr4_3:62768657-62768676 | Msa0654590:intron | 30.0% | |
| GTATATCATTTCCTGACAAA+GGG | - | chr4_3:62768658-62768677 | Msa0654590:intron | 30.0% | |
| ATATCGAGAACAAACTGATT+GGG | + | chr4_3:62768718-62768737 | None:intergenic | 30.0% | |
| ! | ATCTACTAGTGTTTTCAACT+CGG | + | chr4_3:62768994-62769013 | None:intergenic | 30.0% |
| AAAACACTAGTAGATTTGCA+TGG | - | chr4_3:62768999-62769018 | Msa0654590:intron | 30.0% | |
| ATATATGTGTACTTCTCTTC+TGG | - | chr4_3:62769140-62769159 | Msa0654590:intron | 30.0% | |
| ATGATTGAATTGTATTAGGC+TGG | - | chr4_3:62769218-62769237 | Msa0654590:intron | 30.0% | |
| GATGAAACAACAATAATTGC+CGG | - | chr4_3:62769263-62769282 | Msa0654590:intron | 30.0% | |
| ATGAAACAACAATAATTGCC+GGG | - | chr4_3:62769264-62769283 | Msa0654590:intron | 30.0% | |
| ATGACTGAAATATTGGAGAA+AGG | - | chr4_3:62769472-62769491 | Msa0654590:intron | 30.0% | |
| ! | TACAGCATCTTTTCATCTAA+TGG | + | chr4_3:62769610-62769629 | None:intergenic | 30.0% |
| !! | TCTTAGACAACTTAAGTTGA+AGG | - | chr4_3:62769914-62769933 | Msa0654590:intron | 30.0% |
| !! | CTTAGACAACTTAAGTTGAA+GGG | - | chr4_3:62769915-62769934 | Msa0654590:intron | 30.0% |
| AATGGTATTATCTAGTATGG+AGG | + | chr4_3:62769946-62769965 | None:intergenic | 30.0% | |
| AAAATTGTGCGTCATGTTAT+TGG | - | chr4_3:62770157-62770176 | Msa0654590:intron | 30.0% | |
| GACTGTGTTAAGATATTAAG+AGG | - | chr4_3:62770324-62770343 | Msa0654590:CDS | 30.0% | |
| ATTTCTACTAACCAAAGAAC+AGG | - | chr4_3:62770372-62770391 | Msa0654590:intron | 30.0% | |
| TGTGATATTTATGTCATTCC+TGG | - | chr4_3:62770639-62770658 | Msa0654590:intron | 30.0% | |
| GTGATATTTATGTCATTCCT+GGG | - | chr4_3:62770640-62770659 | Msa0654590:intron | 30.0% | |
| TGATATTTATGTCATTCCTG+GGG | - | chr4_3:62770641-62770660 | Msa0654590:intron | 30.0% | |
| !! | GAAACCTTAAGAGTGTTATT+TGG | + | chr4_3:62770750-62770769 | None:intergenic | 30.0% |
| AGCGATATATATCTTACTAG+TGG | + | chr4_3:62770804-62770823 | None:intergenic | 30.0% | |
| ! | ATATATCGCTTTCAAGTCTT+CGG | - | chr4_3:62770814-62770833 | Msa0654590:CDS | 30.0% |
| AGGATATATACAAGATACCT+TGG | + | chr4_3:62771392-62771411 | None:intergenic | 30.0% | |
| GTATCTTGTATATATCCTGT+GGG | - | chr4_3:62771394-62771413 | Msa0654590:CDS | 30.0% | |
| TCATTCAAAATGTCATACAG+CGG | + | chr4_3:62771540-62771559 | None:intergenic | 30.0% | |
| ! | CATTTTGAATGAGTTTCAGA+AGG | - | chr4_3:62771548-62771567 | Msa0654590:intron | 30.0% |
| ! | TTTTGAATGAGTTTCAGAAG+GGG | - | chr4_3:62771550-62771569 | Msa0654590:intron | 30.0% |
| TAAAATAGATTCTGTGAGAG+AGG | - | chr4_3:62771759-62771778 | Msa0654590:intron | 30.0% | |
| AAATACGAACAAGTCGAATA+GGG | - | chr4_3:62771867-62771886 | Msa0654590:intron | 30.0% | |
| AGCTGTTGGAATAATTACAA+TGG | - | chr4_3:62771981-62772000 | Msa0654590:CDS | 30.0% | |
| TGTTGGAATAATTACAATGG+AGG | - | chr4_3:62771984-62772003 | Msa0654590:CDS | 30.0% | |
| ! | TGTTATTGAAGAGCTTTTAC+AGG | - | chr4_3:62772008-62772027 | Msa0654590:intron | 30.0% |
| !! | ATTTTGAAGACTCATGACAA+TGG | - | chr4_3:62772161-62772180 | Msa0654590:intron | 30.0% |
| ! | TTCATTAAACCTAGCGTTTT+TGG | - | chr4_3:62772188-62772207 | Msa0654590:intron | 30.0% |
| !!! | GTTTTTGGAATTTCGTTGTT+TGG | - | chr4_3:62772203-62772222 | Msa0654590:CDS | 30.0% |
| ! | ATAGTTGATACCTACTTGTT+TGG | - | chr4_3:62772464-62772483 | Msa0654590:intron | 30.0% |
| ATTGGTTATCATCTTCTTGG+TGG | - | chr4_3:62767493-62767512 | Msa0654590:three_prime_UTR | 35.0% | |
| AGTTAGTTACGTTACGTTAC+CGG | + | chr4_3:62767624-62767643 | None:intergenic | 35.0% | |
| CTTTAGCAGCTTCATGTTAT+TGG | - | chr4_3:62767716-62767735 | Msa0654590:intron | 35.0% | |
| !! | AAATGCTGATTTCTCACAAC+AGG | + | chr4_3:62767814-62767833 | None:intergenic | 35.0% |
| GTATTCAAAACCATGGTTGT+TGG | - | chr4_3:62768325-62768344 | Msa0654590:intron | 35.0% | |
| !! | TTGATAGTCTTGTTACTGCT+TGG | - | chr4_3:62768373-62768392 | Msa0654590:intron | 35.0% |
| !! | TGATAGTCTTGTTACTGCTT+GGG | - | chr4_3:62768374-62768393 | Msa0654590:intron | 35.0% |
| ! | CTTCGTCCCATAAATTTTCA+AGG | - | chr4_3:62768508-62768527 | Msa0654590:intron | 35.0% |
| CAACATTCAATATGACCCTA+GGG | + | chr4_3:62768540-62768559 | None:intergenic | 35.0% | |
| TATCGAGAACAAACTGATTG+GGG | + | chr4_3:62768717-62768736 | None:intergenic | 35.0% | |
| CATATCGAGAACAAACTGAT+TGG | + | chr4_3:62768719-62768738 | None:intergenic | 35.0% | |
| ! | CAATCAGTTTGTTCTCGATA+TGG | - | chr4_3:62768717-62768736 | Msa0654590:intron | 35.0% |
| ! | AGTTTGTTCTCGATATGGTT+TGG | - | chr4_3:62768722-62768741 | Msa0654590:intron | 35.0% |
| TTGCTAATTGGAAAAGCAAC+TGG | + | chr4_3:62768801-62768820 | None:intergenic | 35.0% | |
| !!! | AGTTGCTTTTCCAATTAGCA+AGG | - | chr4_3:62768800-62768819 | Msa0654590:intron | 35.0% |
| ATGTATGTCACCTTGCTAAT+TGG | + | chr4_3:62768813-62768832 | None:intergenic | 35.0% | |
| CAGTTGTTAGACTATTTGCT+GGG | - | chr4_3:62768939-62768958 | Msa0654590:intron | 35.0% | |
| ! | AGTAGATTTGCATGGTAATG+AGG | - | chr4_3:62769007-62769026 | Msa0654590:intron | 35.0% |
| ! | GTTCTTTTTAACACTGCACT+TGG | - | chr4_3:62769162-62769181 | Msa0654590:intron | 35.0% |
| TTGGAATTCATGCTTACACA+TGG | - | chr4_3:62769181-62769200 | Msa0654590:intron | 35.0% | |
| GAATTGTATTAGGCTGGAAA+AGG | - | chr4_3:62769224-62769243 | Msa0654590:intron | 35.0% | |
| TGAAACAACAATAATTGCCG+GGG | - | chr4_3:62769265-62769284 | Msa0654590:intron | 35.0% | |
| TTAAATACCTATTACCGAGC+AGG | - | chr4_3:62769443-62769462 | Msa0654590:intron | 35.0% | |
| TAAATACCTATTACCGAGCA+GGG | - | chr4_3:62769444-62769463 | Msa0654590:intron | 35.0% | |
| GGAACTGATGACTGAAATAT+TGG | - | chr4_3:62769465-62769484 | Msa0654590:intron | 35.0% | |
| TAGACTGCTCATAAAAGACT+GGG | + | chr4_3:62769510-62769529 | None:intergenic | 35.0% | |
| GAGCAGTCTACTAACATTAT+TGG | - | chr4_3:62769520-62769539 | Msa0654590:intron | 35.0% | |
| TGTAAAAACCACATACAGCT+TGG | - | chr4_3:62769626-62769645 | Msa0654590:intron | 35.0% | |
| TATCCTGAGGATTAATATGC+AGG | - | chr4_3:62769706-62769725 | Msa0654590:intron | 35.0% | |
| !!! | TCTCGCGATTCACTTTTTTA+AGG | - | chr4_3:62769781-62769800 | Msa0654590:intron | 35.0% |
| ! | TGGAGTTGATTACAGATGAT+AGG | - | chr4_3:62770177-62770196 | Msa0654590:intron | 35.0% |
| !!! | TTTCATTTTAGAGCCGTAAG+TGG | - | chr4_3:62770293-62770312 | Msa0654590:CDS | 35.0% |
| AAATTCTAGCCATGCCAATA+GGG | + | chr4_3:62770356-62770375 | None:intergenic | 35.0% | |
| ! | CAAATGTTTCTTTTCAGCTG+TGG | - | chr4_3:62770507-62770526 | Msa0654590:CDS | 35.0% |
| ATACTAAGATCGTTTCGTAG+TGG | + | chr4_3:62770713-62770732 | None:intergenic | 35.0% | |
| ! | TTCTGAGAGCTGTAATTTGA+TGG | - | chr4_3:62770767-62770786 | Msa0654590:intron | 35.0% |
| ! | TATATCGCTTTCAAGTCTTC+GGG | - | chr4_3:62770815-62770834 | Msa0654590:CDS | 35.0% |
| GTCATAATATACAAGGGTTC+TGG | - | chr4_3:62770897-62770916 | Msa0654590:intron | 35.0% | |
| ! | ACAACTGGCTTAACTAATGA+TGG | + | chr4_3:62770931-62770950 | None:intergenic | 35.0% |
| TAAGCCAGTTGTGATATTTG+TGG | - | chr4_3:62770939-62770958 | Msa0654590:intron | 35.0% | |
| ACAACCACAAATATCACAAC+TGG | + | chr4_3:62770946-62770965 | None:intergenic | 35.0% | |
| ! | GAACACATGTACTCGATTTT+AGG | - | chr4_3:62770967-62770986 | Msa0654590:intron | 35.0% |
| AAGAATGCATGATGTAGGTA+TGG | + | chr4_3:62771113-62771132 | None:intergenic | 35.0% | |
| TTTGTTCCTACGATTCTGTT+TGG | - | chr4_3:62771136-62771155 | Msa0654590:intron | 35.0% | |
| ATAGTACCAAACAGAATCGT+AGG | + | chr4_3:62771145-62771164 | None:intergenic | 35.0% | |
| GGTATCTTGTATATATCCTG+TGG | - | chr4_3:62771393-62771412 | Msa0654590:CDS | 35.0% | |
| !! | ATTTTTGGAAGATGGTTGCT+TGG | + | chr4_3:62771616-62771635 | None:intergenic | 35.0% |
| !!! | CACTTTTGGATTGGTATCTT+GGG | + | chr4_3:62771835-62771854 | None:intergenic | 35.0% |
| !! | AAGCTTTTCCACTTTTGGAT+TGG | + | chr4_3:62771844-62771863 | None:intergenic | 35.0% |
| ! | TTGGAAAGCTTTTCCACTTT+TGG | + | chr4_3:62771849-62771868 | None:intergenic | 35.0% |
| ! | CTATTCGACTTGTTCGTATT+TGG | + | chr4_3:62771868-62771887 | None:intergenic | 35.0% |
| CAAATACGAACAAGTCGAAT+AGG | - | chr4_3:62771866-62771885 | Msa0654590:intron | 35.0% | |
| AATACGAACAAGTCGAATAG+GGG | - | chr4_3:62771868-62771887 | Msa0654590:intron | 35.0% | |
| TTCTTCAGGGATATTTGGAA+GGG | + | chr4_3:62771956-62771975 | None:intergenic | 35.0% | |
| TCTTCTTCTTCAGGGATATT+TGG | + | chr4_3:62771961-62771980 | None:intergenic | 35.0% | |
| TTCTACCAAGATTTCAAGAG+TGG | + | chr4_3:62772063-62772082 | None:intergenic | 35.0% | |
| !! | ACTCACGTCTATTTTTCTGT+AGG | - | chr4_3:62772111-62772130 | Msa0654590:intron | 35.0% |
| AACGAAATTCCAAAAACGCT+AGG | + | chr4_3:62772200-62772219 | None:intergenic | 35.0% | |
| TTCCTTCAAAAAGATACCTG+AGG | - | chr4_3:62772288-62772307 | Msa0654590:CDS | 35.0% | |
| GGTACACTAATGTGTCTTTA+AGG | - | chr4_3:62772396-62772415 | Msa0654590:five_prime_UTR | 35.0% | |
| !! | AATGTGTCTTTAAGGCAATG+AGG | - | chr4_3:62772404-62772423 | Msa0654590:five_prime_UTR | 35.0% |
| GGAATGTAATCCAAACAAGT+AGG | + | chr4_3:62772477-62772496 | None:intergenic | 35.0% | |
| ACATTTCGTGAATTTGACCA+AGG | - | chr4_3:62772509-62772528 | Msa0654590:five_prime_UTR | 35.0% | |
| ! | ATCGCTATGTATTTTCTCCT+TGG | + | chr4_3:62772529-62772548 | None:intergenic | 35.0% |
| GAAACAAATGAAGTCGGTGA+TGG | - | chr4_3:62767382-62767401 | Msa0654590:three_prime_UTR | 40.0% | |
| ! | GAAGAGAGAGAAAGTGTGAA+TGG | - | chr4_3:62767427-62767446 | Msa0654590:three_prime_UTR | 40.0% |
| GGAGTTCTTCATCCACATAT+TGG | - | chr4_3:62767475-62767494 | Msa0654590:three_prime_UTR | 40.0% | |
| CTTGAAGTTCTTGCTAAGTC+TGG | - | chr4_3:62767575-62767594 | Msa0654590:three_prime_UTR | 40.0% | |
| CCTGAAAAAACCAACAACCA+TGG | + | chr4_3:62768338-62768357 | None:intergenic | 40.0% | |
| !!! | CCATGGTTGTTGGTTTTTTC+AGG | - | chr4_3:62768335-62768354 | Msa0654590:intron | 40.0% |
| !! | GATAGTCTTGTTACTGCTTG+GGG | - | chr4_3:62768375-62768394 | Msa0654590:intron | 40.0% |
| GAATCAACGTGACTGAAATC+AGG | + | chr4_3:62768407-62768426 | None:intergenic | 40.0% | |
| !! | GTCACGTTGATTCTTCTCTT+TGG | - | chr4_3:62768414-62768433 | Msa0654590:intron | 40.0% |
| ! | GTTGATTCTTCTCTTTGGTG+AGG | - | chr4_3:62768419-62768438 | Msa0654590:intron | 40.0% |
| !! | ATTTTCAAGGATCTCTCCCT+AGG | - | chr4_3:62768521-62768540 | Msa0654590:intron | 40.0% |
| !! | TTTTCAAGGATCTCTCCCTA+GGG | - | chr4_3:62768522-62768541 | Msa0654590:intron | 40.0% |
| CCAACATTCAATATGACCCT+AGG | + | chr4_3:62768541-62768560 | None:intergenic | 40.0% | |
| CCTAGGGTCATATTGAATGT+TGG | - | chr4_3:62768538-62768557 | Msa0654590:intron | 40.0% | |
| AACATATCCATACAAGCACG+CGG | + | chr4_3:62768776-62768795 | None:intergenic | 40.0% | |
| CCAGCAAATAGTCTAACAAC+TGG | + | chr4_3:62768941-62768960 | None:intergenic | 40.0% | |
| CCAGTTGTTAGACTATTTGC+TGG | - | chr4_3:62768938-62768957 | Msa0654590:intron | 40.0% | |
| AGCGACTGAAATGTCACTAA+AGG | - | chr4_3:62769117-62769136 | Msa0654590:intron | 40.0% | |
| TTCATGCTTACACATGGTTG+TGG | - | chr4_3:62769187-62769206 | Msa0654590:intron | 40.0% | |
| TTGTATTAGGCTGGAAAAGG+TGG | - | chr4_3:62769227-62769246 | Msa0654590:intron | 40.0% | |
| TGTATTAGGCTGGAAAAGGT+GGG | - | chr4_3:62769228-62769247 | Msa0654590:intron | 40.0% | |
| TATAGGAGTCATAGCATCAC+TGG | + | chr4_3:62769315-62769334 | None:intergenic | 40.0% | |
| GTAGACTGCTCATAAAAGAC+TGG | + | chr4_3:62769511-62769530 | None:intergenic | 40.0% | |
| TGAGTGTTCTTCAGTGCTAA+TGG | + | chr4_3:62769583-62769602 | None:intergenic | 40.0% | |
| TGACCTGCATATTAATCCTC+AGG | + | chr4_3:62769712-62769731 | None:intergenic | 40.0% | |
| AGTGATGATATTGTCTCACG+TGG | + | chr4_3:62769846-62769865 | None:intergenic | 40.0% | |
| CGTGAGACAATATCATCACT+TGG | - | chr4_3:62769846-62769865 | Msa0654590:intron | 40.0% | |
| ! | AGTGCTTAACAGAGCACTTT+AGG | - | chr4_3:62769878-62769897 | Msa0654590:intron | 40.0% |
| GAGACTCCAATTCCATGAAA+TGG | + | chr4_3:62769964-62769983 | None:intergenic | 40.0% | |
| ACACTTCATGCTGAGTATGT+TGG | - | chr4_3:62770078-62770097 | Msa0654590:intron | 40.0% | |
| AAACAAATGCTGTGGCATAC+AGG | - | chr4_3:62770115-62770134 | Msa0654590:intron | 40.0% | |
| ! | CAGTCTAAAATGGCCACTTA+CGG | + | chr4_3:62770309-62770328 | None:intergenic | 40.0% |
| TTAAGAGGACATTGCCCTAT+TGG | - | chr4_3:62770339-62770358 | Msa0654590:CDS | 40.0% | |
| GAAATTCTAGCCATGCCAAT+AGG | + | chr4_3:62770357-62770376 | None:intergenic | 40.0% | |
| ! | CTGAAGTATTTAGAGAGCAG+AGG | - | chr4_3:62770403-62770422 | Msa0654590:intron | 40.0% |
| TATTTAGAGAGCAGAGGAGA+TGG | - | chr4_3:62770409-62770428 | Msa0654590:intron | 40.0% | |
| ! | CTGTGGAGTATTTGAGCTAT+AGG | - | chr4_3:62770524-62770543 | Msa0654590:CDS | 40.0% |
| AAGACCTTAGACTGAAACCT+AGG | + | chr4_3:62770620-62770639 | None:intergenic | 40.0% | |
| ! | ATGCTGCTTGTGTAGACTTT+GGG | - | chr4_3:62771029-62771048 | Msa0654590:CDS | 40.0% |
| TTTACAGGCGATTCATCTTC+TGG | + | chr4_3:62771347-62771366 | None:intergenic | 40.0% | |
| CGTATGGTTACACTCTTTAC+AGG | + | chr4_3:62771362-62771381 | None:intergenic | 40.0% | |
| ! | TAAAGAGTGTAACCATACGC+AGG | - | chr4_3:62771363-62771382 | Msa0654590:intron | 40.0% |
| ATCGCATTGTCGTACAACAA+CGG | + | chr4_3:62771589-62771608 | None:intergenic | 40.0% | |
| TTCAAGACTTTCTCTTGGAG+AGG | + | chr4_3:62771811-62771830 | None:intergenic | 40.0% | |
| TGGGTTTCAAGACTTTCTCT+TGG | + | chr4_3:62771816-62771835 | None:intergenic | 40.0% | |
| !!! | CCACTTTTGGATTGGTATCT+TGG | + | chr4_3:62771836-62771855 | None:intergenic | 40.0% |
| CCAAGATACCAATCCAAAAG+TGG | - | chr4_3:62771833-62771852 | Msa0654590:intron | 40.0% | |
| TCTTCAGGGATATTTGGAAG+GGG | + | chr4_3:62771955-62771974 | None:intergenic | 40.0% | |
| CTTCTTCAGGGATATTTGGA+AGG | + | chr4_3:62771957-62771976 | None:intergenic | 40.0% | |
| CAACAGCTTCTTCTTCTTCA+GGG | + | chr4_3:62771969-62771988 | None:intergenic | 40.0% | |
| CAAGATTTCAAGAGTGGATG+AGG | + | chr4_3:62772057-62772076 | None:intergenic | 40.0% | |
| CTCATCCACTCTTGAAATCT+TGG | - | chr4_3:62772055-62772074 | Msa0654590:intron | 40.0% | |
| !! | CACGTCTATTTTTCTGTAGG+AGG | - | chr4_3:62772114-62772133 | Msa0654590:intron | 40.0% |
| ! | AGCTGCTGTTTAGATATCTG+AGG | - | chr4_3:62772263-62772282 | Msa0654590:CDS | 40.0% |
| ! | CACCTCAGGTATCTTTTTGA+AGG | + | chr4_3:62772293-62772312 | None:intergenic | 40.0% |
| TGATGTTCTAATCACACCTC+AGG | + | chr4_3:62772307-62772326 | None:intergenic | 40.0% | |
| ACGAAATGTTCTCGCGAAAT+AGG | + | chr4_3:62772498-62772517 | None:intergenic | 40.0% | |
| ! | GTGATGGAACTCATCTGAAG+CGG | - | chr4_3:62767398-62767417 | Msa0654590:three_prime_UTR | 45.0% |
| ! | GAGAGAGAAAGTGTGAATGG+CGG | - | chr4_3:62767430-62767449 | Msa0654590:three_prime_UTR | 45.0% |
| GGAATACACATGCTGCGAAT+CGG | - | chr4_3:62767454-62767473 | Msa0654590:three_prime_UTR | 45.0% | |
| TTAATGTCCGGACTCACCTT+AGG | - | chr4_3:62767527-62767546 | Msa0654590:three_prime_UTR | 45.0% | |
| ACTGAGAGACATGAGACCTA+AGG | + | chr4_3:62767546-62767565 | None:intergenic | 45.0% | |
| AAGAGGTAGTAGTACCTCCA+TGG | + | chr4_3:62767872-62767891 | None:intergenic | 45.0% | |
| ! | TCTCGATATGGTTTGGCCAT+TGG | - | chr4_3:62768729-62768748 | Msa0654590:intron | 45.0% |
| ! | GTGTTTTCAACTCGGCTCTA+CGG | + | chr4_3:62768986-62769005 | None:intergenic | 45.0% |
| GTATTAGGCTGGAAAAGGTG+GGG | - | chr4_3:62769229-62769248 | Msa0654590:intron | 45.0% | |
| AGTTGAGTCCAAGCTGTATG+TGG | + | chr4_3:62769637-62769656 | None:intergenic | 45.0% | |
| GTGGCAACTTTCTTATCCTG+AGG | - | chr4_3:62769693-62769712 | Msa0654590:intron | 45.0% | |
| ! | GCGAGAGTCTGATAGTTTTC+AGG | + | chr4_3:62769767-62769786 | None:intergenic | 45.0% |
| GATGATATTGTCTCACGTGG+AGG | + | chr4_3:62769843-62769862 | None:intergenic | 45.0% | |
| CAGAGTTCAGACCTGTTCTT+TGG | + | chr4_3:62770386-62770405 | None:intergenic | 45.0% | |
| CAGCTCATCACACATAGAGA+TGG | + | chr4_3:62770595-62770614 | None:intergenic | 45.0% | |
| CATCTCTATGTGTGATGAGC+TGG | - | chr4_3:62770593-62770612 | Msa0654590:intron | 45.0% | |
| TGGTCCTAGGTTTCAGTCTA+AGG | - | chr4_3:62770613-62770632 | Msa0654590:intron | 45.0% | |
| TTATGTCATTCCTGGGGAGA+TGG | - | chr4_3:62770647-62770666 | Msa0654590:intron | 45.0% | |
| !!! | TGTTTTAACTGCCTCCTGCA+TGG | - | chr4_3:62770683-62770702 | Msa0654590:intron | 45.0% |
| ! | GATGCTGCTTGTGTAGACTT+TGG | - | chr4_3:62771028-62771047 | Msa0654590:CDS | 45.0% |
| GCTTGTGTAGACTTTGGGTA+TGG | - | chr4_3:62771034-62771053 | Msa0654590:CDS | 45.0% | |
| TAACCATACGCAGGATTCCA+AGG | - | chr4_3:62771372-62771391 | Msa0654590:intron | 45.0% | |
| ATACCTTGGAATCCTGCGTA+TGG | + | chr4_3:62771378-62771397 | None:intergenic | 45.0% | |
| !! | AACTTGTTACGGCAAGTGTG+AGG | + | chr4_3:62771431-62771450 | None:intergenic | 45.0% |
| TCATACAGCGGCATACTTTC+TGG | + | chr4_3:62771528-62771547 | None:intergenic | 45.0% | |
| AGATTCTGTGAGAGAGGTGA+AGG | - | chr4_3:62771765-62771784 | Msa0654590:intron | 45.0% | |
| GAGGTGAAGGTGGATATTGA+TGG | - | chr4_3:62771778-62771797 | Msa0654590:intron | 45.0% | |
| ACAAGTCGAATAGGGGTTCT+CGG | - | chr4_3:62771875-62771894 | Msa0654590:intron | 45.0% | |
| CCAACAGCTTCTTCTTCTTC+AGG | + | chr4_3:62771970-62771989 | None:intergenic | 45.0% | |
| CCTGAAGAAGAAGAAGCTGT+TGG | - | chr4_3:62771967-62771986 | Msa0654590:CDS | 45.0% | |
| GAGTTTAGTGGCGTGTGTTG+TGG | + | chr4_3:62767298-62767317 | None:intergenic | 50.0% | |
| ! | AGAGAAAGTGTGAATGGCGG+TGG | - | chr4_3:62767433-62767452 | Msa0654590:three_prime_UTR | 50.0% |
| ! | ATCTTCTTGGTGGTCTTCGC+CGG | - | chr4_3:62767503-62767522 | Msa0654590:three_prime_UTR | 50.0% |
| !! | GTCTTCGCCGGTTTAATGTC+CGG | - | chr4_3:62767515-62767534 | Msa0654590:three_prime_UTR | 50.0% |
| GGTGAGTCCGGACATTAAAC+CGG | + | chr4_3:62767525-62767544 | None:intergenic | 50.0% | |
| CATGAGACCTAAGGTGAGTC+CGG | + | chr4_3:62767537-62767556 | None:intergenic | 50.0% | |
| AGGTAGTAGTACCTCCATGG+CGG | + | chr4_3:62767869-62767888 | None:intergenic | 50.0% | |
| GTGTGTTAGAGCCCTTTGTC+AGG | + | chr4_3:62768672-62768691 | None:intergenic | 50.0% | |
| AGGAGTGACTGATGCACCAA+TGG | + | chr4_3:62768748-62768767 | None:intergenic | 50.0% | |
| CATACAAGCACGCGGACAAA+AGG | + | chr4_3:62768768-62768787 | None:intergenic | 50.0% | |
| ! | CTTTTGTCCGCGTGCTTGTA+TGG | - | chr4_3:62768766-62768785 | Msa0654590:intron | 50.0% |
| CAACTCGGCTCTACGGAAAA+GGG | + | chr4_3:62768979-62768998 | None:intergenic | 50.0% | |
| TCAACTCGGCTCTACGGAAA+AGG | + | chr4_3:62768980-62768999 | None:intergenic | 50.0% | |
| TCAGTTCCCTGCTCGGTAAT+AGG | + | chr4_3:62769453-62769472 | None:intergenic | 50.0% | |
| TCAGTCATCAGTTCCCTGCT+CGG | + | chr4_3:62769460-62769479 | None:intergenic | 50.0% | |
| TATAGGGTCAGTAGTGCCCA+AGG | + | chr4_3:62770222-62770241 | None:intergenic | 50.0% | |
| AGGACATTGCCCTATTGGCA+TGG | - | chr4_3:62770344-62770363 | Msa0654590:intron | 50.0% | |
| ATGTGTGATGAGCTGGTCCT+AGG | - | chr4_3:62770600-62770619 | Msa0654590:intron | 50.0% | |
| TTTGCTTCAACCATCTCCCC+AGG | + | chr4_3:62770660-62770679 | None:intergenic | 50.0% | |
| TTTAACTGCCTCCTGCATGG+TGG | - | chr4_3:62770686-62770705 | Msa0654590:intron | 50.0% | |
| ! | TCAGAAGGGGCATAGTCACA+TGG | - | chr4_3:62771563-62771582 | Msa0654590:intron | 50.0% |
| TTCTGTGAGAGAGGTGAAGG+TGG | - | chr4_3:62771768-62771787 | Msa0654590:intron | 50.0% | |
| TGAGGCATGCCAGCAAATCA+TGG | - | chr4_3:62772422-62772441 | Msa0654590:five_prime_UTR | 50.0% | |
| GTGGCGTGTGTTGTGGTAGA+TGG | + | chr4_3:62767291-62767310 | None:intergenic | 55.0% | |
| CCTCACGATCGTAAACACGC+CGG | - | chr4_3:62767602-62767621 | Msa0654590:three_prime_UTR | 55.0% | |
| TAGTAGTACCTCCATGGCGG+CGG | + | chr4_3:62767866-62767885 | None:intergenic | 55.0% | |
| CTCACTGAGTTCAAGTGCCC+CGG | + | chr4_3:62769285-62769304 | None:intergenic | 55.0% | |
| !! | TTCGTAGTGGACCACCATGC+AGG | + | chr4_3:62770700-62770719 | None:intergenic | 55.0% |
| GAGGTGAGTAGAAGTCCCAC+AGG | + | chr4_3:62771412-62771431 | None:intergenic | 55.0% | |
| GGGGTTCTCGGAGCAGAAAA+TGG | - | chr4_3:62771887-62771906 | Msa0654590:intron | 55.0% | |
| CCGGCGTGTTTACGATCGTG+AGG | + | chr4_3:62767605-62767624 | None:intergenic | 60.0% | |
| CATTTGCAATGCCGCCGCCA+TGG | - | chr4_3:62767852-62767871 | Msa0654590:CDS | 60.0% | |
| !! | GTAGTGGACCACCATGCAGG+AGG | + | chr4_3:62770697-62770716 | None:intergenic | 60.0% |
| TTGCAATGCCGCCGCCATGG+AGG | - | chr4_3:62767855-62767874 | Msa0654590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 62767245 | 62772579 | 62767245 | ID=Msa0654590;Name=Msa0654590 |
| chr4_3 | mRNA | 62767245 | 62772579 | 62767245 | ID=Msa0654590-mRNA-1;Parent=Msa0654590;Name=Msa0654590-mRNA-1;_AED=0.23;_eAED=0.23;_QI=174|1|1|1|0.90|0.83|12|402|424 |
| chr4_3 | exon | 62767245 | 62767691 | 62767245 | ID=Msa0654590-mRNA-1:exon:17582;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62767795 | 62768057 | 62767795 | ID=Msa0654590-mRNA-1:exon:17581;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62768179 | 62768303 | 62768179 | ID=Msa0654590-mRNA-1:exon:17580;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62768431 | 62768504 | 62768431 | ID=Msa0654590-mRNA-1:exon:17579;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62770272 | 62770359 | 62770272 | ID=Msa0654590-mRNA-1:exon:17578;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62770449 | 62770588 | 62770449 | ID=Msa0654590-mRNA-1:exon:17577;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62770796 | 62770882 | 62770796 | ID=Msa0654590-mRNA-1:exon:17576;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62771003 | 62771116 | 62771003 | ID=Msa0654590-mRNA-1:exon:17575;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62771384 | 62771467 | 62771384 | ID=Msa0654590-mRNA-1:exon:17574;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62771948 | 62772024 | 62771948 | ID=Msa0654590-mRNA-1:exon:17573;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62772201 | 62772445 | 62772201 | ID=Msa0654590-mRNA-1:exon:17572;Parent=Msa0654590-mRNA-1 |
| chr4_3 | exon | 62772473 | 62772579 | 62772473 | ID=Msa0654590-mRNA-1:exon:17571;Parent=Msa0654590-mRNA-1 |
| chr4_3 | five_prime_UTR | 62772473 | 62772579 | 62772473 | ID=Msa0654590-mRNA-1:five_prime_utr;Parent=Msa0654590-mRNA-1 |
| chr4_3 | five_prime_UTR | 62772379 | 62772445 | 62772379 | ID=Msa0654590-mRNA-1:five_prime_utr;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62772201 | 62772378 | 62772201 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62771948 | 62772024 | 62771948 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62771384 | 62771467 | 62771384 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62771003 | 62771116 | 62771003 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62770796 | 62770882 | 62770796 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62770449 | 62770588 | 62770449 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62770272 | 62770359 | 62770272 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62768431 | 62768504 | 62768431 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62768179 | 62768303 | 62768179 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62767795 | 62768057 | 62767795 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | CDS | 62767647 | 62767691 | 62767647 | ID=Msa0654590-mRNA-1:cds;Parent=Msa0654590-mRNA-1 |
| chr4_3 | three_prime_UTR | 62767245 | 62767646 | 62767245 | ID=Msa0654590-mRNA-1:three_prime_utr;Parent=Msa0654590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
