Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412780 | sp|Q9ZQR4|Y2452_ARATH | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412780 | G7JTY3 | 98.824 | 425 | 4 | 1 | 1 | 424 | 1 | 425 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381890 | Msa1412780 | 0.970478 | 1.116924e-131 | -8.615850e-47 |
| Msa0654590 | Msa1412780 | 0.984971 | 3.881269e-162 | -8.615850e-47 |
| Msa0148360 | Msa1412780 | 0.800783 | 1.225746e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412780 | MtrunA17_Chr4g0049251 | 98.824 | 425 | 4 | 1 | 1 | 424 | 1 | 425 | 0.0 | 854 |
| Msa1412780 | MtrunA17_Chr2g0280251 | 81.163 | 430 | 74 | 3 | 1 | 424 | 1 | 429 | 0.0 | 676 |
| Msa1412780 | MtrunA17_Chr3g0141551 | 56.206 | 427 | 180 | 4 | 1 | 420 | 1 | 427 | 6.58e-165 | 473 |
| Msa1412780 | MtrunA17_Chr4g0065751 | 55.687 | 422 | 158 | 6 | 12 | 422 | 35 | 438 | 3.36e-156 | 450 |
| Msa1412780 | MtrunA17_Chr6g0467811 | 55.556 | 405 | 151 | 6 | 21 | 422 | 40 | 418 | 4.11e-149 | 431 |
| Msa1412780 | MtrunA17_Chr6g0469911 | 48.585 | 424 | 197 | 4 | 7 | 422 | 29 | 439 | 2.80e-136 | 399 |
| Msa1412780 | MtrunA17_Chr7g0259621 | 52.058 | 413 | 187 | 6 | 12 | 418 | 35 | 442 | 9.82e-136 | 397 |
| Msa1412780 | MtrunA17_Chr6g0469771 | 55.036 | 278 | 125 | 0 | 4 | 281 | 5 | 282 | 1.39e-111 | 329 |
| Msa1412780 | MtrunA17_Chr7g0217521 | 54.789 | 261 | 117 | 1 | 21 | 281 | 44 | 303 | 2.94e-96 | 291 |
| Msa1412780 | MtrunA17_Chr7g0217531 | 40.411 | 146 | 64 | 5 | 279 | 418 | 4 | 132 | 1.97e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412780 | AT2G14520.4 | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Msa1412780 | AT2G14520.1 | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Msa1412780 | AT2G14520.2 | 78.960 | 423 | 82 | 3 | 1 | 423 | 1 | 416 | 0.0 | 673 |
| Msa1412780 | AT4G33700.1 | 78.454 | 427 | 86 | 3 | 1 | 424 | 1 | 424 | 0.0 | 672 |
| Msa1412780 | AT2G14520.3 | 77.353 | 340 | 76 | 1 | 84 | 423 | 1 | 339 | 0.0 | 536 |
| Msa1412780 | AT4G33700.3 | 77.035 | 344 | 73 | 3 | 84 | 424 | 1 | 341 | 0.0 | 530 |
| Msa1412780 | AT4G33700.2 | 84.342 | 281 | 44 | 0 | 1 | 281 | 1 | 281 | 1.64e-172 | 484 |
| Msa1412780 | AT1G47330.1 | 53.968 | 441 | 180 | 4 | 1 | 420 | 1 | 439 | 2.90e-162 | 467 |
| Msa1412780 | AT5G52790.4 | 55.319 | 423 | 154 | 4 | 2 | 422 | 3 | 392 | 1.03e-158 | 454 |
| Msa1412780 | AT5G52790.1 | 55.319 | 423 | 154 | 4 | 2 | 422 | 3 | 392 | 1.12e-157 | 455 |
| Msa1412780 | AT5G52790.3 | 54.988 | 411 | 150 | 4 | 2 | 410 | 3 | 380 | 3.35e-152 | 437 |
| Msa1412780 | AT5G52790.2 | 54.988 | 411 | 150 | 4 | 2 | 410 | 3 | 380 | 3.35e-152 | 437 |
| Msa1412780 | AT5G52790.5 | 54.722 | 413 | 152 | 4 | 2 | 412 | 3 | 382 | 1.74e-151 | 437 |
| Msa1412780 | AT4G14240.1 | 54.306 | 418 | 165 | 6 | 11 | 422 | 34 | 431 | 7.51e-145 | 422 |
| Msa1412780 | AT4G14230.1 | 51.816 | 413 | 185 | 5 | 11 | 422 | 33 | 432 | 2.20e-141 | 413 |
| Msa1412780 | AT1G03270.1 | 53.081 | 422 | 170 | 7 | 12 | 422 | 33 | 437 | 1.14e-139 | 409 |
| Msa1412780 | AT4G14240.2 | 53.110 | 418 | 161 | 7 | 11 | 422 | 34 | 422 | 1.21e-136 | 400 |
| Msa1412780 | AT1G47330.2 | 50.975 | 359 | 153 | 3 | 83 | 420 | 2 | 358 | 1.40e-120 | 358 |
| Msa1412780 | AT4G14240.3 | 53.179 | 346 | 136 | 6 | 83 | 422 | 2 | 327 | 1.21e-111 | 333 |
| Msa1412780 | AT3G13070.1 | 27.559 | 254 | 156 | 9 | 72 | 312 | 226 | 464 | 1.16e-13 | 73.6 |
| Msa1412780 | AT1G55930.1 | 27.843 | 255 | 154 | 10 | 72 | 312 | 221 | 459 | 1.28e-13 | 73.2 |
| Msa1412780 | AT1G55930.2 | 28.063 | 253 | 152 | 10 | 74 | 312 | 223 | 459 | 1.73e-13 | 72.8 |
Find 114 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACATCAGTAATGAAATTT+AGG | 0.132855 | tig0023956:+43697 | Msa1412780:three_prime_UTR |
| CTATTCGACTTGTTCGTATT+TGG | 0.137170 | tig0023956:-43243 | None:intergenic |
| GAGCAGTCTACTAACATTAT+TGG | 0.167034 | tig0023956:+40897 | Msa1412780:CDS |
| TCTTCTTCTTCAGGGATATT+TGG | 0.182695 | tig0023956:-43336 | None:intergenic |
| ACGAAATGTTCTCGCGAAAT+AGG | 0.201542 | tig0023956:-43873 | None:intergenic |
| ATAATTAGATAATGCGGTTT+AGG | 0.230773 | tig0023956:+43613 | Msa1412780:three_prime_UTR |
| GGTACACTAATGTGTCTTTA+AGG | 0.244640 | tig0023956:+43774 | Msa1412780:three_prime_UTR |
| CCAACAGCTTCTTCTTCTTC+AGG | 0.246006 | tig0023956:-43345 | None:intergenic |
| CATATTGGTTATCATCTTCT+TGG | 0.246562 | tig0023956:+38867 | Msa1412780:CDS |
| TCATACAGCGGCATACTTTC+TGG | 0.250177 | tig0023956:-42903 | None:intergenic |
| CAATCAGTTTGTTCTCGATA+TGG | 0.266595 | tig0023956:+40094 | Msa1412780:CDS |
| GTCACGTTGATTCTTCTCTT+TGG | 0.274630 | tig0023956:+39791 | Msa1412780:CDS |
| CGTATGGTTACACTCTTTAC+AGG | 0.295718 | tig0023956:-42737 | None:intergenic |
| TAATTAGATAATGCGGTTTA+GGG | 0.299088 | tig0023956:+43614 | Msa1412780:three_prime_UTR |
| ATGTATGTCACCTTGCTAAT+TGG | 0.301980 | tig0023956:-40187 | None:intergenic |
| TTTACAGGCGATTCATCTTC+TGG | 0.305252 | tig0023956:-42722 | None:intergenic |
| ATAGTTGATACCTACTTGTT+TGG | 0.306426 | tig0023956:+43842 | Msa1412780:three_prime_UTR |
| GTGGCGTGTGTTGTGGTAGA+TGG | 0.308908 | tig0023956:-38665 | None:intergenic |
| CCAGTTGTTAGACTATTTGC+TGG | 0.312154 | tig0023956:+40315 | Msa1412780:intron |
| TGATAGTCTTGTTACTGCTT+GGG | 0.319831 | tig0023956:+39751 | Msa1412780:CDS |
| GAAAAGTAGTTAGAGTTTAG+TGG | 0.336161 | tig0023956:-38684 | None:intergenic |
| GGAACTGATGACTGAAATAT+TGG | 0.341934 | tig0023956:+40842 | Msa1412780:CDS |
| TTGATAGTCTTGTTACTGCT+TGG | 0.343981 | tig0023956:+39750 | Msa1412780:CDS |
| AACATCAGTAATGAAATTTA+GGG | 0.345408 | tig0023956:+43698 | Msa1412780:three_prime_UTR |
| CAAATACGAACAAGTCGAAT+AGG | 0.348065 | tig0023956:+43244 | Msa1412780:CDS |
| TAACATTATTGGATTAATAC+TGG | 0.362806 | tig0023956:+40908 | Msa1412780:CDS |
| GGAGTTCTTCATCCACATAT+TGG | 0.363983 | tig0023956:+38852 | Msa1412780:CDS |
| ATAGCAAATGTTTCAGATAT+AGG | 0.364291 | tig0023956:-40706 | None:intergenic |
| AAATACGAACAAGTCGAATA+GGG | 0.365943 | tig0023956:+43245 | Msa1412780:CDS |
| TCAACTCGGCTCTACGGAAA+AGG | 0.383543 | tig0023956:-40354 | None:intergenic |
| CTTGAAGTTCTTGCTAAGTC+TGG | 0.388705 | tig0023956:+38952 | Msa1412780:CDS |
| TTGCTAATTGGAAAAGCAAC+TGG | 0.400425 | tig0023956:-40175 | None:intergenic |
| ATCTTCTTGGTGGTCTTCGC+CGG | 0.401529 | tig0023956:+38880 | Msa1412780:CDS |
| GATGAAACAACAATAATTGC+CGG | 0.410016 | tig0023956:+40640 | Msa1412780:CDS |
| CAACAGCTTCTTCTTCTTCA+GGG | 0.421642 | tig0023956:-43344 | None:intergenic |
| TGGGTTTCAAGACTTTCTCT+TGG | 0.427213 | tig0023956:-43191 | None:intergenic |
| CATTTGCAATGCCGCCGCCA+TGG | 0.428491 | tig0023956:+39229 | Msa1412780:CDS |
| TTCTGTGAGAGAGGTGAAGG+TGG | 0.428661 | tig0023956:+43146 | Msa1412780:CDS |
| ATATTAATTCGAAGCTTGAT+AGG | 0.428680 | tig0023956:+40731 | Msa1412780:CDS |
| ATATCGAGAACAAACTGATT+GGG | 0.432835 | tig0023956:-40092 | None:intergenic |
| TTAATGTCCGGACTCACCTT+AGG | 0.436067 | tig0023956:+38904 | Msa1412780:CDS |
| AGAGAAAGTGTGAATGGCGG+TGG | 0.439640 | tig0023956:+38810 | Msa1412780:exon |
| GAATCAACGTGACTGAAATC+AGG | 0.439998 | tig0023956:-39781 | None:intergenic |
| AGTTTGTTCTCGATATGGTT+TGG | 0.445684 | tig0023956:+40099 | Msa1412780:CDS |
| ATTGGTTATCATCTTCTTGG+TGG | 0.446975 | tig0023956:+38870 | Msa1412780:CDS |
| TCTCGATATGGTTTGGCCAT+TGG | 0.452760 | tig0023956:+40106 | Msa1412780:CDS |
| CATATCGAGAACAAACTGAT+TGG | 0.460455 | tig0023956:-40093 | None:intergenic |
| GGTGAGTCCGGACATTAAAC+CGG | 0.461990 | tig0023956:-38899 | None:intergenic |
| CAACTCGGCTCTACGGAAAA+GGG | 0.462073 | tig0023956:-40353 | None:intergenic |
| AAATGCTGATTTCTCACAAC+AGG | 0.462976 | tig0023956:-39188 | None:intergenic |
| GTCTTCGCCGGTTTAATGTC+CGG | 0.465784 | tig0023956:+38892 | Msa1412780:CDS |
| CATACAAGCACGCGGACAAA+AGG | 0.470475 | tig0023956:-40142 | None:intergenic |
| TTGTATTAGGCTGGAAAAGG+TGG | 0.472607 | tig0023956:+40604 | Msa1412780:intron |
| AGATTCTGTGAGAGAGGTGA+AGG | 0.479457 | tig0023956:+43143 | Msa1412780:intron |
| TTCAAGACTTTCTCTTGGAG+AGG | 0.484352 | tig0023956:-43186 | None:intergenic |
| GGGGTTCTCGGAGCAGAAAA+TGG | 0.486966 | tig0023956:+43265 | Msa1412780:CDS |
| CTTCTTCAGGGATATTTGGA+AGG | 0.495785 | tig0023956:-43332 | None:intergenic |
| ACAAGTCGAATAGGGGTTCT+CGG | 0.497243 | tig0023956:+43253 | Msa1412780:CDS |
| CAGTTGTTAGACTATTTGCT+GGG | 0.503149 | tig0023956:+40316 | Msa1412780:intron |
| GGAATACACATGCTGCGAAT+CGG | 0.507074 | tig0023956:+38831 | Msa1412780:CDS |
| GAATTGTATTAGGCTGGAAA+AGG | 0.507317 | tig0023956:+40601 | Msa1412780:intron |
| CCAAGATACCAATCCAAAAG+TGG | 0.512266 | tig0023956:+43211 | Msa1412780:CDS |
| GTAGACTGCTCATAAAAGAC+TGG | 0.512510 | tig0023956:-40885 | None:intergenic |
| ATGAAACAACAATAATTGCC+GGG | 0.518788 | tig0023956:+40641 | Msa1412780:CDS |
| TGTATTAGGCTGGAAAAGGT+GGG | 0.520587 | tig0023956:+40605 | Msa1412780:intron |
| TTCTTCAGGGATATTTGGAA+GGG | 0.520911 | tig0023956:-43331 | None:intergenic |
| CATGAGACCTAAGGTGAGTC+CGG | 0.527621 | tig0023956:-38911 | None:intergenic |
| GATAGTCTTGTTACTGCTTG+GGG | 0.531398 | tig0023956:+39752 | Msa1412780:CDS |
| TAAAATAGATTCTGTGAGAG+AGG | 0.536381 | tig0023956:+43137 | Msa1412780:intron |
| CCTGAAGAAGAAGAAGCTGT+TGG | 0.542971 | tig0023956:+43345 | Msa1412780:CDS |
| AGTAGATTTGCATGGTAATG+AGG | 0.545332 | tig0023956:+40384 | Msa1412780:CDS |
| ATGACTGAAATATTGGAGAA+AGG | 0.546165 | tig0023956:+40849 | Msa1412780:CDS |
| AGAAGATGATAACCAATATG+TGG | 0.546494 | tig0023956:-38864 | None:intergenic |
| TGAGGCATGCCAGCAAATCA+TGG | 0.553917 | tig0023956:+43800 | Msa1412780:three_prime_UTR |
| GAGGTGAAGGTGGATATTGA+TGG | 0.556091 | tig0023956:+43156 | Msa1412780:CDS |
| TATAGGAGTCATAGCATCAC+TGG | 0.563065 | tig0023956:-40689 | None:intergenic |
| AGGAGTGACTGATGCACCAA+TGG | 0.564195 | tig0023956:-40122 | None:intergenic |
| GGAATGTAATCCAAACAAGT+AGG | 0.566031 | tig0023956:-43852 | None:intergenic |
| GAAACAAATGAAGTCGGTGA+TGG | 0.567511 | tig0023956:+38759 | Msa1412780:five_prime_UTR |
| GAAGAGAGAGAAAGTGTGAA+TGG | 0.568383 | tig0023956:+38804 | Msa1412780:exon |
| GTTGATTCTTCTCTTTGGTG+AGG | 0.574660 | tig0023956:+39796 | Msa1412780:CDS |
| TAACCATACGCAGGATTCCA+AGG | 0.576381 | tig0023956:+42750 | Msa1412780:CDS |
| TAGTAGTACCTCCATGGCGG+CGG | 0.577933 | tig0023956:-39240 | None:intergenic |
| CTCACTGAGTTCAAGTGCCC+CGG | 0.578508 | tig0023956:-40659 | None:intergenic |
| GAGTTTAGTGGCGTGTGTTG+TGG | 0.578971 | tig0023956:-38672 | None:intergenic |
| TCTTCAGGGATATTTGGAAG+GGG | 0.580165 | tig0023956:-43330 | None:intergenic |
| TGATGTTCTAATCACACCTC+AGG | 0.580514 | tig0023956:-43682 | None:intergenic |
| ATACCTTGGAATCCTGCGTA+TGG | 0.590163 | tig0023956:-42753 | None:intergenic |
| ACTGAGAGACATGAGACCTA+AGG | 0.612493 | tig0023956:-38920 | None:intergenic |
| AATACGAACAAGTCGAATAG+GGG | 0.612720 | tig0023956:+43246 | Msa1412780:CDS |
| AAAACACTAGTAGATTTGCA+TGG | 0.612993 | tig0023956:+40376 | Msa1412780:CDS |
| AAATAAGAAACAAATGAAGT+CGG | 0.619536 | tig0023956:+38753 | Msa1412780:intron |
| ACATTTCGTGAATTTGACCA+AGG | 0.620717 | tig0023956:+43887 | Msa1412780:three_prime_UTR |
| AAGAGGTAGTAGTACCTCCA+TGG | 0.621063 | tig0023956:-39246 | None:intergenic |
| CAATAGATAATTAGATAATG+CGG | 0.621446 | tig0023956:+43607 | Msa1412780:three_prime_UTR |
| AGCTGTTGGAATAATTACAA+TGG | 0.624823 | tig0023956:+43359 | Msa1412780:CDS |
| ATCGCATTGTCGTACAACAA+CGG | 0.629829 | tig0023956:-42964 | None:intergenic |
| TGTTGGAATAATTACAATGG+AGG | 0.632047 | tig0023956:+43362 | Msa1412780:CDS |
| TATCGAGAACAAACTGATTG+GGG | 0.632512 | tig0023956:-40091 | None:intergenic |
| TAGACTGCTCATAAAAGACT+GGG | 0.648315 | tig0023956:-40884 | None:intergenic |
| GTATTAGGCTGGAAAAGGTG+GGG | 0.650287 | tig0023956:+40606 | Msa1412780:intron |
| TCAGAAGGGGCATAGTCACA+TGG | 0.652219 | tig0023956:+42941 | Msa1412780:CDS |
| GTGATGGAACTCATCTGAAG+CGG | 0.654741 | tig0023956:+38775 | Msa1412780:five_prime_UTR |
| CCGGCGTGTTTACGATCGTG+AGG | 0.657033 | tig0023956:-38979 | None:intergenic |
| AATGTGTCTTTAAGGCAATG+AGG | 0.660021 | tig0023956:+43782 | Msa1412780:three_prime_UTR |
| TAAAGAGTGTAACCATACGC+AGG | 0.665814 | tig0023956:+42741 | Msa1412780:CDS |
| TTGCAATGCCGCCGCCATGG+AGG | 0.672226 | tig0023956:+39232 | Msa1412780:CDS |
| AGCTGCTGTTTAGATATCTG+AGG | 0.672963 | tig0023956:+43641 | Msa1412780:three_prime_UTR |
| TGAAACAACAATAATTGCCG+GGG | 0.673538 | tig0023956:+40642 | Msa1412780:CDS |
| GAGAGAGAAAGTGTGAATGG+CGG | 0.680617 | tig0023956:+38807 | Msa1412780:exon |
| TCATTCAAAATGTCATACAG+CGG | 0.722071 | tig0023956:-42915 | None:intergenic |
| AACATATCCATACAAGCACG+CGG | 0.727396 | tig0023956:-40150 | None:intergenic |
| AGGTAGTAGTACCTCCATGG+CGG | 0.742514 | tig0023956:-39243 | None:intergenic |
| CCTCACGATCGTAAACACGC+CGG | 0.756533 | tig0023956:+38979 | Msa1412780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCCAATAAATAAAAT+TGG | - | tig0023956:39066-39085 | None:intergenic | 10.0% |
| !!! | TGAATTTTTATTAAAAAAGA+AGG | - | tig0023956:41048-41067 | None:intergenic | 10.0% |
| !!! | TTTTTAATAAAAATTCAATG+TGG | + | tig0023956:41051-41070 | Msa1412780:intron | 10.0% |
| !!! | TTATGCATTTATTATTGATT+TGG | + | tig0023956:39118-39137 | Msa1412780:intron | 15.0% |
| !! | AATAAGCTTAAAATAGATTA+TGG | - | tig0023956:39310-39329 | None:intergenic | 15.0% |
| !!! | TGATTATGTATAACTATTTT+TGG | - | tig0023956:39484-39503 | None:intergenic | 15.0% |
| !!! | AGCTTTAATACTTTTTATAT+TGG | + | tig0023956:39943-39962 | Msa1412780:intron | 15.0% |
| !!! | TACTTTTATTTGAATAAACA+AGG | + | tig0023956:40226-40245 | Msa1412780:intron | 15.0% |
| !! | TTTAATTGCAAAAATAACTT+TGG | - | tig0023956:42382-42401 | None:intergenic | 15.0% |
| !!! | AAATAAATAATGTAGTTTTG+AGG | - | tig0023956:42442-42461 | None:intergenic | 15.0% |
| !! | AAAAAATATAGAGAAAAGAA+TGG | - | tig0023956:42571-42590 | None:intergenic | 15.0% |
| !!! | TCATTTGTTTCTTATTTAAG+AGG | - | tig0023956:38750-38769 | None:intergenic | 20.0% |
| !! | AAATAAGAAACAAATGAAGT+CGG | + | tig0023956:38753-38772 | Msa1412780:intron | 20.0% |
| !! | CCAATAAATAAAATTGGATA+CGG | - | tig0023956:39060-39079 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAAATCTTC+AGG | + | tig0023956:39324-39343 | Msa1412780:intron | 20.0% |
| !! | AATTTGTCTTCAATAAAAGA+GGG | - | tig0023956:39458-39477 | None:intergenic | 20.0% |
| !!! | TAATTTGTCTTCAATAAAAG+AGG | - | tig0023956:39459-39478 | None:intergenic | 20.0% |
| !! | ATTTGTATGTTGTTCTTATA+TGG | + | tig0023956:39565-39584 | Msa1412780:intron | 20.0% |
| !! | TCAATACTAATATTCAAAGA+AGG | + | tig0023956:39597-39616 | Msa1412780:intron | 20.0% |
| !! | AATATTCAAAGAAGGTTATA+TGG | + | tig0023956:39605-39624 | Msa1412780:intron | 20.0% |
| !! | TATTTCAGTTGAAACATATA+GGG | - | tig0023956:39836-39855 | None:intergenic | 20.0% |
| !!! | TTTTATTTGAATAAACAAGG+AGG | + | tig0023956:40229-40248 | Msa1412780:intron | 20.0% |
| !! | TAACATTATTGGATTAATAC+TGG | + | tig0023956:40908-40927 | Msa1412780:CDS | 20.0% |
| !!! | TCTTAATAACCAGATATTTT+AGG | + | tig0023956:41390-41409 | Msa1412780:intron | 20.0% |
| !!! | CTTAATAACCAGATATTTTA+GGG | + | tig0023956:41391-41410 | Msa1412780:intron | 20.0% |
| !! | TAGGGAATTGAATAAATTAT+TGG | + | tig0023956:41409-41428 | Msa1412780:intron | 20.0% |
| !! | TAATTAGAGGAGATATTATA+GGG | - | tig0023956:41616-41635 | None:intergenic | 20.0% |
| !! | TTAATTAGAGGAGATATTAT+AGG | - | tig0023956:41617-41636 | None:intergenic | 20.0% |
| !!! | AATTAATATTTTCTCCTGTT+AGG | + | tig0023956:41631-41650 | Msa1412780:intron | 20.0% |
| !! | GATATAGCAGATAAAATAAT+TGG | + | tig0023956:42224-42243 | Msa1412780:intron | 20.0% |
| !!! | TACATTATTTATTTTCTCGT+TGG | + | tig0023956:42448-42467 | Msa1412780:intron | 20.0% |
| !!! | ACATTATTTATTTTCTCGTT+GGG | + | tig0023956:42449-42468 | Msa1412780:intron | 20.0% |
| !!! | TTGGTACTATTTTATATGTT+AGG | + | tig0023956:42533-42552 | Msa1412780:intron | 20.0% |
| !! | TTAAACAAGTGTTCAAATTA+TGG | - | tig0023956:42861-42880 | None:intergenic | 20.0% |
| !! | TTAAAATTACATATGTTGAC+AGG | + | tig0023956:42877-42896 | Msa1412780:intron | 20.0% |
| !! | TAAAATTACATATGTTGACA+GGG | + | tig0023956:42878-42897 | Msa1412780:intron | 20.0% |
| !!! | ATATTTTAATTAGATCTCGT+TGG | + | tig0023956:43069-43088 | Msa1412780:intron | 20.0% |
| !! | CAATAGATAATTAGATAATG+CGG | + | tig0023956:43607-43626 | Msa1412780:three_prime_UTR | 20.0% |
| !! | AACATCAGTAATGAAATTTA+GGG | + | tig0023956:43698-43717 | Msa1412780:three_prime_UTR | 20.0% |
| !!! | TGGAGTTTTTTAATATTAGC+TGG | - | tig0023956:38648-38667 | None:intergenic | 25.0% |
| !!! | CCGTATCCAATTTTATTTAT+TGG | + | tig0023956:39057-39076 | Msa1412780:intron | 25.0% |
| ! | TCAAAAAAATCGATGAAAAG+AGG | - | tig0023956:39266-39285 | None:intergenic | 25.0% |
| ! | CATGCGATTTCAATAAAAAA+GGG | - | tig0023956:39435-39454 | None:intergenic | 25.0% |
| ! | ATTCGTGTAATATTCAAAGA+AGG | + | tig0023956:39525-39544 | Msa1412780:intron | 25.0% |
| ! | CTTTGTATGTTGTTCTTATA+TGG | + | tig0023956:39674-39693 | Msa1412780:intron | 25.0% |
| ! | ACAAGACTATCAAGAAAAAT+AGG | - | tig0023956:39743-39762 | None:intergenic | 25.0% |
| ! | GTATTTCAGTTGAAACATAT+AGG | - | tig0023956:39837-39856 | None:intergenic | 25.0% |
| ! | TGTATATCATGTTATCTTGA+TGG | + | tig0023956:39858-39877 | Msa1412780:intron | 25.0% |
| ! | AGAGATCCTTGAAAATTTAT+GGG | - | tig0023956:39894-39913 | None:intergenic | 25.0% |
| ! | ATACAAGAACACTAAGATAT+AGG | - | tig0023956:40019-40038 | None:intergenic | 25.0% |
| ! | ACTGAGAAGAAAAGAAAAAT+AGG | - | tig0023956:40275-40294 | None:intergenic | 25.0% |
| ! | GTTCATGATTGAATTGTATT+AGG | + | tig0023956:40591-40610 | Msa1412780:intron | 25.0% |
| ! | ATAGCAAATGTTTCAGATAT+AGG | - | tig0023956:40709-40728 | None:intergenic | 25.0% |
| ! | ATATTAATTCGAAGCTTGAT+AGG | + | tig0023956:40731-40750 | Msa1412780:CDS | 25.0% |
| ! | TTTGATCGAACAGTAAAAAA+TGG | - | tig0023956:41113-41132 | None:intergenic | 25.0% |
| ! | TGAAATGGTATTATCTAGTA+TGG | - | tig0023956:41326-41345 | None:intergenic | 25.0% |
| ! | TACTAGATAATACCATTTCA+TGG | + | tig0023956:41326-41345 | Msa1412780:intron | 25.0% |
| ! | ATAATACCATTTCATGGAAT+TGG | + | tig0023956:41332-41351 | Msa1412780:intron | 25.0% |
| ! | ATTCAATTCCCTAAAATATC+TGG | - | tig0023956:41402-41421 | None:intergenic | 25.0% |
| ! | AAGAAAATAAACAAATGCTG+TGG | + | tig0023956:41484-41503 | Msa1412780:intron | 25.0% |
| ! | TATATGTAAACTTTCTACCT+TGG | + | tig0023956:41580-41599 | Msa1412780:intron | 25.0% |
| ! | ATATGTAAACTTTCTACCTT+GGG | + | tig0023956:41581-41600 | Msa1412780:intron | 25.0% |
| ! | CAGGAGAAAATATTAATTAG+AGG | - | tig0023956:41629-41648 | None:intergenic | 25.0% |
| ! | TAGAAAATAAGATTCCTAAC+AGG | - | tig0023956:41648-41667 | None:intergenic | 25.0% |
| ! | TATCTTAACACAGTCTAAAA+TGG | - | tig0023956:41697-41716 | None:intergenic | 25.0% |
| ! | AGATGGAAATAATGTTTCTT+AGG | + | tig0023956:41804-41823 | Msa1412780:intron | 25.0% |
| ! | AGCAAGAAAAGTCATTTATA+TGG | + | tig0023956:41929-41948 | Msa1412780:intron | 25.0% |
| !!! | TTAAGAGTGTTATTTGGTTA+TGG | - | tig0023956:42122-42141 | None:intergenic | 25.0% |
| ! | ATAACCAAATAACACTCTTA+AGG | + | tig0023956:42121-42140 | Msa1412780:intron | 25.0% |
| ! | TACACAAGTCATAATATACA+AGG | + | tig0023956:42268-42287 | Msa1412780:intron | 25.0% |
| ! | ACACAAGTCATAATATACAA+GGG | + | tig0023956:42269-42288 | Msa1412780:intron | 25.0% |
| ! | AAATAAAGAATGCATGATGT+AGG | - | tig0023956:42496-42515 | None:intergenic | 25.0% |
| ! | GCACATATTCAGAAATTAAA+AGG | - | tig0023956:42665-42684 | None:intergenic | 25.0% |
| !!! | GTACATTATGAAACTTGTTA+CGG | - | tig0023956:42820-42839 | None:intergenic | 25.0% |
| ! | AGTTTCATAATGTACTTAGT+TGG | + | tig0023956:42825-42844 | Msa1412780:intron | 25.0% |
| !! | ATTTTGAATGAGTTTCAGAA+GGG | + | tig0023956:42927-42946 | Msa1412780:CDS | 25.0% |
| !!! | TTTGAATCATTTTTGGAAGA+TGG | - | tig0023956:43002-43021 | None:intergenic | 25.0% |
| ! | TCTTCCAAAAATGATTCAAA+TGG | + | tig0023956:43002-43021 | Msa1412780:CDS | 25.0% |
| !! | CTTACCATTTGAATCATTTT+TGG | - | tig0023956:43009-43028 | None:intergenic | 25.0% |
| !!! | TCAGATATTTTAGAGATAGA+TGG | + | tig0023956:43303-43322 | Msa1412780:CDS | 25.0% |
| ! | ATAATTAGATAATGCGGTTT+AGG | + | tig0023956:43613-43632 | Msa1412780:three_prime_UTR | 25.0% |
| ! | TAATTAGATAATGCGGTTTA+GGG | + | tig0023956:43614-43633 | Msa1412780:three_prime_UTR | 25.0% |
| ! | GAACATCAGTAATGAAATTT+AGG | + | tig0023956:43697-43716 | Msa1412780:three_prime_UTR | 25.0% |
| !!! | TTTCTTTTTAGAGATGTATG+CGG | + | tig0023956:43753-43772 | Msa1412780:three_prime_UTR | 25.0% |
| !! | AAAAATATACCATGATTTGC+TGG | - | tig0023956:43812-43831 | None:intergenic | 25.0% |
| GAAAAGTAGTTAGAGTTTAG+TGG | - | tig0023956:38687-38706 | None:intergenic | 30.0% | |
| AGAAGATGATAACCAATATG+TGG | - | tig0023956:38867-38886 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATCATCTTCT+TGG | + | tig0023956:38867-38886 | Msa1412780:CDS | 30.0% |
| GCATGCGATTTCAATAAAAA+AGG | - | tig0023956:39436-39455 | None:intergenic | 30.0% | |
| CAGTATTCAATAGTATTCGA+AGG | + | tig0023956:39631-39650 | Msa1412780:intron | 30.0% | |
| TATTCAATAGTATTCGAAGG+AGG | + | tig0023956:39634-39653 | Msa1412780:intron | 30.0% | |
| GGATTTAGTATTCAAAACCA+TGG | + | tig0023956:39695-39714 | Msa1412780:intron | 30.0% | |
| GAGAGATCCTTGAAAATTTA+TGG | - | tig0023956:39895-39914 | None:intergenic | 30.0% | |
| TGTATATCATTTCCTGACAA+AGG | + | tig0023956:40034-40053 | Msa1412780:intron | 30.0% | |
| GTATATCATTTCCTGACAAA+GGG | + | tig0023956:40035-40054 | Msa1412780:intron | 30.0% | |
| ATATCGAGAACAAACTGATT+GGG | - | tig0023956:40095-40114 | None:intergenic | 30.0% | |
| ! | ATCTACTAGTGTTTTCAACT+CGG | - | tig0023956:40371-40390 | None:intergenic | 30.0% |
| AAAACACTAGTAGATTTGCA+TGG | + | tig0023956:40376-40395 | Msa1412780:CDS | 30.0% | |
| ATATATGTGTACTTCTCTTC+TGG | + | tig0023956:40517-40536 | Msa1412780:intron | 30.0% | |
| ATGATTGAATTGTATTAGGC+TGG | + | tig0023956:40595-40614 | Msa1412780:intron | 30.0% | |
| GATGAAACAACAATAATTGC+CGG | + | tig0023956:40640-40659 | Msa1412780:CDS | 30.0% | |
| ATGAAACAACAATAATTGCC+GGG | + | tig0023956:40641-40660 | Msa1412780:CDS | 30.0% | |
| ATGACTGAAATATTGGAGAA+AGG | + | tig0023956:40849-40868 | Msa1412780:CDS | 30.0% | |
| ! | TACAGCATCTTTTCATCTAA+TGG | - | tig0023956:40987-41006 | None:intergenic | 30.0% |
| !! | TCTTAGACAACTTAAGTTGA+AGG | + | tig0023956:41291-41310 | Msa1412780:intron | 30.0% |
| !! | CTTAGACAACTTAAGTTGAA+GGG | + | tig0023956:41292-41311 | Msa1412780:intron | 30.0% |
| AATGGTATTATCTAGTATGG+AGG | - | tig0023956:41323-41342 | None:intergenic | 30.0% | |
| AAAATTGTGCGTCATGTTAT+TGG | + | tig0023956:41535-41554 | Msa1412780:intron | 30.0% | |
| GACTGTGTTAAGATATTAAG+AGG | + | tig0023956:41702-41721 | Msa1412780:intron | 30.0% | |
| ATTTCTACTAACCAAAGAAC+AGG | + | tig0023956:41750-41769 | Msa1412780:intron | 30.0% | |
| TGTGATATTTATGTCATTCC+TGG | + | tig0023956:42017-42036 | Msa1412780:intron | 30.0% | |
| GTGATATTTATGTCATTCCT+GGG | + | tig0023956:42018-42037 | Msa1412780:intron | 30.0% | |
| TGATATTTATGTCATTCCTG+GGG | + | tig0023956:42019-42038 | Msa1412780:intron | 30.0% | |
| !! | GAAACCTTAAGAGTGTTATT+TGG | - | tig0023956:42128-42147 | None:intergenic | 30.0% |
| AGCGATATATATCTTACTAG+TGG | - | tig0023956:42182-42201 | None:intergenic | 30.0% | |
| ! | ATATATCGCTTTCAAGTCTT+CGG | + | tig0023956:42192-42211 | Msa1412780:intron | 30.0% |
| AGGATATATACAAGATACCT+TGG | - | tig0023956:42770-42789 | None:intergenic | 30.0% | |
| GTATCTTGTATATATCCTGT+GGG | + | tig0023956:42772-42791 | Msa1412780:intron | 30.0% | |
| TCATTCAAAATGTCATACAG+CGG | - | tig0023956:42918-42937 | None:intergenic | 30.0% | |
| ! | CATTTTGAATGAGTTTCAGA+AGG | + | tig0023956:42926-42945 | Msa1412780:CDS | 30.0% |
| ! | TTTTGAATGAGTTTCAGAAG+GGG | + | tig0023956:42928-42947 | Msa1412780:CDS | 30.0% |
| TAAAATAGATTCTGTGAGAG+AGG | + | tig0023956:43137-43156 | Msa1412780:intron | 30.0% | |
| AAATACGAACAAGTCGAATA+GGG | + | tig0023956:43245-43264 | Msa1412780:CDS | 30.0% | |
| AGCTGTTGGAATAATTACAA+TGG | + | tig0023956:43359-43378 | Msa1412780:CDS | 30.0% | |
| TGTTGGAATAATTACAATGG+AGG | + | tig0023956:43362-43381 | Msa1412780:CDS | 30.0% | |
| ! | TGTTATTGAAGAGCTTTTAC+AGG | + | tig0023956:43386-43405 | Msa1412780:CDS | 30.0% |
| !! | ATTTTGAAGACTCATGACAA+TGG | + | tig0023956:43539-43558 | Msa1412780:exon | 30.0% |
| ! | TTCATTAAACCTAGCGTTTT+TGG | + | tig0023956:43566-43585 | Msa1412780:three_prime_UTR | 30.0% |
| !!! | GTTTTTGGAATTTCGTTGTT+TGG | + | tig0023956:43581-43600 | Msa1412780:three_prime_UTR | 30.0% |
| ! | ATAGTTGATACCTACTTGTT+TGG | + | tig0023956:43842-43861 | Msa1412780:three_prime_UTR | 30.0% |
| ATTGGTTATCATCTTCTTGG+TGG | + | tig0023956:38870-38889 | Msa1412780:CDS | 35.0% | |
| AGTTAGTTACGTTACGTTAC+CGG | - | tig0023956:39001-39020 | None:intergenic | 35.0% | |
| CTTTAGCAGCTTCATGTTAT+TGG | + | tig0023956:39093-39112 | Msa1412780:intron | 35.0% | |
| !! | AAATGCTGATTTCTCACAAC+AGG | - | tig0023956:39191-39210 | None:intergenic | 35.0% |
| GTATTCAAAACCATGGTTGT+TGG | + | tig0023956:39702-39721 | Msa1412780:intron | 35.0% | |
| !! | TTGATAGTCTTGTTACTGCT+TGG | + | tig0023956:39750-39769 | Msa1412780:CDS | 35.0% |
| !! | TGATAGTCTTGTTACTGCTT+GGG | + | tig0023956:39751-39770 | Msa1412780:CDS | 35.0% |
| ! | CTTCGTCCCATAAATTTTCA+AGG | + | tig0023956:39885-39904 | Msa1412780:intron | 35.0% |
| CAACATTCAATATGACCCTA+GGG | - | tig0023956:39917-39936 | None:intergenic | 35.0% | |
| TATCGAGAACAAACTGATTG+GGG | - | tig0023956:40094-40113 | None:intergenic | 35.0% | |
| CATATCGAGAACAAACTGAT+TGG | - | tig0023956:40096-40115 | None:intergenic | 35.0% | |
| ! | CAATCAGTTTGTTCTCGATA+TGG | + | tig0023956:40094-40113 | Msa1412780:CDS | 35.0% |
| ! | AGTTTGTTCTCGATATGGTT+TGG | + | tig0023956:40099-40118 | Msa1412780:CDS | 35.0% |
| TTGCTAATTGGAAAAGCAAC+TGG | - | tig0023956:40178-40197 | None:intergenic | 35.0% | |
| !!! | AGTTGCTTTTCCAATTAGCA+AGG | + | tig0023956:40177-40196 | Msa1412780:CDS | 35.0% |
| ATGTATGTCACCTTGCTAAT+TGG | - | tig0023956:40190-40209 | None:intergenic | 35.0% | |
| CAGTTGTTAGACTATTTGCT+GGG | + | tig0023956:40316-40335 | Msa1412780:intron | 35.0% | |
| ! | AGTAGATTTGCATGGTAATG+AGG | + | tig0023956:40384-40403 | Msa1412780:CDS | 35.0% |
| ! | GTTCTTTTTAACACTGCACT+TGG | + | tig0023956:40539-40558 | Msa1412780:intron | 35.0% |
| TTGGAATTCATGCTTACACA+TGG | + | tig0023956:40558-40577 | Msa1412780:intron | 35.0% | |
| GAATTGTATTAGGCTGGAAA+AGG | + | tig0023956:40601-40620 | Msa1412780:intron | 35.0% | |
| TGAAACAACAATAATTGCCG+GGG | + | tig0023956:40642-40661 | Msa1412780:CDS | 35.0% | |
| TTAAATACCTATTACCGAGC+AGG | + | tig0023956:40820-40839 | Msa1412780:intron | 35.0% | |
| TAAATACCTATTACCGAGCA+GGG | + | tig0023956:40821-40840 | Msa1412780:intron | 35.0% | |
| GGAACTGATGACTGAAATAT+TGG | + | tig0023956:40842-40861 | Msa1412780:CDS | 35.0% | |
| TAGACTGCTCATAAAAGACT+GGG | - | tig0023956:40887-40906 | None:intergenic | 35.0% | |
| GAGCAGTCTACTAACATTAT+TGG | + | tig0023956:40897-40916 | Msa1412780:CDS | 35.0% | |
| TGTAAAAACCACATACAGCT+TGG | + | tig0023956:41003-41022 | Msa1412780:intron | 35.0% | |
| TATCCTGAGGATTAATATGC+AGG | + | tig0023956:41083-41102 | Msa1412780:intron | 35.0% | |
| !!! | TCTCGCGATTCACTTTTTTA+AGG | + | tig0023956:41158-41177 | Msa1412780:intron | 35.0% |
| ! | TGGAGTTGATTACAGATGAT+AGG | + | tig0023956:41555-41574 | Msa1412780:intron | 35.0% |
| !!! | TTTCATTTTAGAGCCGTAAG+TGG | + | tig0023956:41671-41690 | Msa1412780:intron | 35.0% |
| AAATTCTAGCCATGCCAATA+GGG | - | tig0023956:41734-41753 | None:intergenic | 35.0% | |
| CTGAAATATTTAGAGAGCAG+AGG | + | tig0023956:41781-41800 | Msa1412780:intron | 35.0% | |
| ! | CAAATGTTTCTTTTCAGCTG+TGG | + | tig0023956:41885-41904 | Msa1412780:intron | 35.0% |
| ATACTAAGATCGTTTCGTAG+TGG | - | tig0023956:42091-42110 | None:intergenic | 35.0% | |
| ! | TTCTGAGAGCTGTAATTTGA+TGG | + | tig0023956:42145-42164 | Msa1412780:intron | 35.0% |
| ! | TATATCGCTTTCAAGTCTTC+GGG | + | tig0023956:42193-42212 | Msa1412780:intron | 35.0% |
| GTCATAATATACAAGGGTTC+TGG | + | tig0023956:42275-42294 | Msa1412780:intron | 35.0% | |
| ! | ACAACTGGCTTAACTAATGA+TGG | - | tig0023956:42309-42328 | None:intergenic | 35.0% |
| TAAGCCAGTTGTGATATTTG+TGG | + | tig0023956:42317-42336 | Msa1412780:intron | 35.0% | |
| ACAACCACAAATATCACAAC+TGG | - | tig0023956:42324-42343 | None:intergenic | 35.0% | |
| ! | GAACACATGTACTCGATTTT+AGG | + | tig0023956:42345-42364 | Msa1412780:intron | 35.0% |
| AAGAATGCATGATGTAGGTA+TGG | - | tig0023956:42491-42510 | None:intergenic | 35.0% | |
| TTTGTTCCTACGATTCTGTT+TGG | + | tig0023956:42514-42533 | Msa1412780:intron | 35.0% | |
| ATAGTACCAAACAGAATCGT+AGG | - | tig0023956:42523-42542 | None:intergenic | 35.0% | |
| GGTATCTTGTATATATCCTG+TGG | + | tig0023956:42771-42790 | Msa1412780:intron | 35.0% | |
| !! | ATTTTTGGAAGATGGTTGCT+TGG | - | tig0023956:42994-43013 | None:intergenic | 35.0% |
| !!! | CACTTTTGGATTGGTATCTT+GGG | - | tig0023956:43213-43232 | None:intergenic | 35.0% |
| !! | AAGCTTTTCCACTTTTGGAT+TGG | - | tig0023956:43222-43241 | None:intergenic | 35.0% |
| ! | TTGGAAAGCTTTTCCACTTT+TGG | - | tig0023956:43227-43246 | None:intergenic | 35.0% |
| ! | CTATTCGACTTGTTCGTATT+TGG | - | tig0023956:43246-43265 | None:intergenic | 35.0% |
| CAAATACGAACAAGTCGAAT+AGG | + | tig0023956:43244-43263 | Msa1412780:CDS | 35.0% | |
| AATACGAACAAGTCGAATAG+GGG | + | tig0023956:43246-43265 | Msa1412780:CDS | 35.0% | |
| TTCTTCAGGGATATTTGGAA+GGG | - | tig0023956:43334-43353 | None:intergenic | 35.0% | |
| TCTTCTTCTTCAGGGATATT+TGG | - | tig0023956:43339-43358 | None:intergenic | 35.0% | |
| TTCTACCAAGATTTCAAGAG+TGG | - | tig0023956:43441-43460 | None:intergenic | 35.0% | |
| !! | ACTCACGTCTATTTTTCTGT+AGG | + | tig0023956:43489-43508 | Msa1412780:intron | 35.0% |
| AACGAAATTCCAAAAACGCT+AGG | - | tig0023956:43578-43597 | None:intergenic | 35.0% | |
| TTCCTTCAAAAAGATACCTG+AGG | + | tig0023956:43666-43685 | Msa1412780:three_prime_UTR | 35.0% | |
| GGTACACTAATGTGTCTTTA+AGG | + | tig0023956:43774-43793 | Msa1412780:three_prime_UTR | 35.0% | |
| !! | AATGTGTCTTTAAGGCAATG+AGG | + | tig0023956:43782-43801 | Msa1412780:three_prime_UTR | 35.0% |
| GGAATGTAATCCAAACAAGT+AGG | - | tig0023956:43855-43874 | None:intergenic | 35.0% | |
| ACATTTCGTGAATTTGACCA+AGG | + | tig0023956:43887-43906 | Msa1412780:three_prime_UTR | 35.0% | |
| ! | ATCGCTATGTATTTTCTCCT+TGG | - | tig0023956:43907-43926 | None:intergenic | 35.0% |
| GAAACAAATGAAGTCGGTGA+TGG | + | tig0023956:38759-38778 | Msa1412780:five_prime_UTR | 40.0% | |
| ! | GAAGAGAGAGAAAGTGTGAA+TGG | + | tig0023956:38804-38823 | Msa1412780:exon | 40.0% |
| GGAGTTCTTCATCCACATAT+TGG | + | tig0023956:38852-38871 | Msa1412780:CDS | 40.0% | |
| CTTGAAGTTCTTGCTAAGTC+TGG | + | tig0023956:38952-38971 | Msa1412780:CDS | 40.0% | |
| CCTGAAAAAACCAACAACCA+TGG | - | tig0023956:39715-39734 | None:intergenic | 40.0% | |
| !!! | CCATGGTTGTTGGTTTTTTC+AGG | + | tig0023956:39712-39731 | Msa1412780:intron | 40.0% |
| !! | GATAGTCTTGTTACTGCTTG+GGG | + | tig0023956:39752-39771 | Msa1412780:CDS | 40.0% |
| GAATCAACGTGACTGAAATC+AGG | - | tig0023956:39784-39803 | None:intergenic | 40.0% | |
| !! | GTCACGTTGATTCTTCTCTT+TGG | + | tig0023956:39791-39810 | Msa1412780:CDS | 40.0% |
| ! | GTTGATTCTTCTCTTTGGTG+AGG | + | tig0023956:39796-39815 | Msa1412780:CDS | 40.0% |
| !! | ATTTTCAAGGATCTCTCCCT+AGG | + | tig0023956:39898-39917 | Msa1412780:intron | 40.0% |
| !! | TTTTCAAGGATCTCTCCCTA+GGG | + | tig0023956:39899-39918 | Msa1412780:intron | 40.0% |
| CCAACATTCAATATGACCCT+AGG | - | tig0023956:39918-39937 | None:intergenic | 40.0% | |
| CCTAGGGTCATATTGAATGT+TGG | + | tig0023956:39915-39934 | Msa1412780:intron | 40.0% | |
| AACATATCCATACAAGCACG+CGG | - | tig0023956:40153-40172 | None:intergenic | 40.0% | |
| CCAGCAAATAGTCTAACAAC+TGG | - | tig0023956:40318-40337 | None:intergenic | 40.0% | |
| CCAGTTGTTAGACTATTTGC+TGG | + | tig0023956:40315-40334 | Msa1412780:intron | 40.0% | |
| AGCGACTGAAATGTCACTAA+AGG | + | tig0023956:40494-40513 | Msa1412780:intron | 40.0% | |
| TTCATGCTTACACATGGTTG+TGG | + | tig0023956:40564-40583 | Msa1412780:intron | 40.0% | |
| TTGTATTAGGCTGGAAAAGG+TGG | + | tig0023956:40604-40623 | Msa1412780:intron | 40.0% | |
| TGTATTAGGCTGGAAAAGGT+GGG | + | tig0023956:40605-40624 | Msa1412780:intron | 40.0% | |
| TATAGGAGTCATAGCATCAC+TGG | - | tig0023956:40692-40711 | None:intergenic | 40.0% | |
| GTAGACTGCTCATAAAAGAC+TGG | - | tig0023956:40888-40907 | None:intergenic | 40.0% | |
| TGAGTGTTCTTCAGTGCTAA+TGG | - | tig0023956:40960-40979 | None:intergenic | 40.0% | |
| TGACCTGCATATTAATCCTC+AGG | - | tig0023956:41089-41108 | None:intergenic | 40.0% | |
| AGTGATGATATTGTCTCACG+TGG | - | tig0023956:41223-41242 | None:intergenic | 40.0% | |
| CGTGAGACAATATCATCACT+TGG | + | tig0023956:41223-41242 | Msa1412780:intron | 40.0% | |
| ! | AGTGCTTAACAGAGCACTTT+AGG | + | tig0023956:41255-41274 | Msa1412780:intron | 40.0% |
| GAGACTCCAATTCCATGAAA+TGG | - | tig0023956:41341-41360 | None:intergenic | 40.0% | |
| ACACTTCATGCTGAGTATGT+TGG | + | tig0023956:41455-41474 | Msa1412780:intron | 40.0% | |
| AAACAAATGCTGTGGCATAC+AGG | + | tig0023956:41492-41511 | Msa1412780:intron | 40.0% | |
| ! | CAGTCTAAAATGGCCACTTA+CGG | - | tig0023956:41687-41706 | None:intergenic | 40.0% |
| TTAAGAGGACATTGCCCTAT+TGG | + | tig0023956:41717-41736 | Msa1412780:intron | 40.0% | |
| GAAATTCTAGCCATGCCAAT+AGG | - | tig0023956:41735-41754 | None:intergenic | 40.0% | |
| TATTTAGAGAGCAGAGGAGA+TGG | + | tig0023956:41787-41806 | Msa1412780:intron | 40.0% | |
| ! | CTGTGGAGTATTTGAGCTAT+AGG | + | tig0023956:41902-41921 | Msa1412780:intron | 40.0% |
| AAGACCTTAGACTGAAACCT+AGG | - | tig0023956:41998-42017 | None:intergenic | 40.0% | |
| ! | ATGCTGCTTGTGTAGACTTT+GGG | + | tig0023956:42407-42426 | Msa1412780:intron | 40.0% |
| TTTACAGGCGATTCATCTTC+TGG | - | tig0023956:42725-42744 | None:intergenic | 40.0% | |
| CGTATGGTTACACTCTTTAC+AGG | - | tig0023956:42740-42759 | None:intergenic | 40.0% | |
| ! | TAAAGAGTGTAACCATACGC+AGG | + | tig0023956:42741-42760 | Msa1412780:CDS | 40.0% |
| ATCGCATTGTCGTACAACAA+CGG | - | tig0023956:42967-42986 | None:intergenic | 40.0% | |
| TTCAAGACTTTCTCTTGGAG+AGG | - | tig0023956:43189-43208 | None:intergenic | 40.0% | |
| TGGGTTTCAAGACTTTCTCT+TGG | - | tig0023956:43194-43213 | None:intergenic | 40.0% | |
| !!! | CCACTTTTGGATTGGTATCT+TGG | - | tig0023956:43214-43233 | None:intergenic | 40.0% |
| CCAAGATACCAATCCAAAAG+TGG | + | tig0023956:43211-43230 | Msa1412780:CDS | 40.0% | |
| TCTTCAGGGATATTTGGAAG+GGG | - | tig0023956:43333-43352 | None:intergenic | 40.0% | |
| CTTCTTCAGGGATATTTGGA+AGG | - | tig0023956:43335-43354 | None:intergenic | 40.0% | |
| CAACAGCTTCTTCTTCTTCA+GGG | - | tig0023956:43347-43366 | None:intergenic | 40.0% | |
| CAAGATTTCAAGAGTGGATG+AGG | - | tig0023956:43435-43454 | None:intergenic | 40.0% | |
| CTCATCCACTCTTGAAATCT+TGG | + | tig0023956:43433-43452 | Msa1412780:intron | 40.0% | |
| !! | CACGTCTATTTTTCTGTAGG+AGG | + | tig0023956:43492-43511 | Msa1412780:intron | 40.0% |
| ! | AGCTGCTGTTTAGATATCTG+AGG | + | tig0023956:43641-43660 | Msa1412780:three_prime_UTR | 40.0% |
| ! | CACCTCAGGTATCTTTTTGA+AGG | - | tig0023956:43671-43690 | None:intergenic | 40.0% |
| TGATGTTCTAATCACACCTC+AGG | - | tig0023956:43685-43704 | None:intergenic | 40.0% | |
| ACGAAATGTTCTCGCGAAAT+AGG | - | tig0023956:43876-43895 | None:intergenic | 40.0% | |
| ! | GTGATGGAACTCATCTGAAG+CGG | + | tig0023956:38775-38794 | Msa1412780:five_prime_UTR | 45.0% |
| ! | GAGAGAGAAAGTGTGAATGG+CGG | + | tig0023956:38807-38826 | Msa1412780:exon | 45.0% |
| GGAATACACATGCTGCGAAT+CGG | + | tig0023956:38831-38850 | Msa1412780:CDS | 45.0% | |
| TTAATGTCCGGACTCACCTT+AGG | + | tig0023956:38904-38923 | Msa1412780:CDS | 45.0% | |
| ACTGAGAGACATGAGACCTA+AGG | - | tig0023956:38923-38942 | None:intergenic | 45.0% | |
| AAGAGGTAGTAGTACCTCCA+TGG | - | tig0023956:39249-39268 | None:intergenic | 45.0% | |
| ! | TCTCGATATGGTTTGGCCAT+TGG | + | tig0023956:40106-40125 | Msa1412780:CDS | 45.0% |
| ! | GTGTTTTCAACTCGGCTCTA+CGG | - | tig0023956:40363-40382 | None:intergenic | 45.0% |
| GTATTAGGCTGGAAAAGGTG+GGG | + | tig0023956:40606-40625 | Msa1412780:intron | 45.0% | |
| AGTTGAGTCCAAGCTGTATG+TGG | - | tig0023956:41014-41033 | None:intergenic | 45.0% | |
| GTGGCAACTTTCTTATCCTG+AGG | + | tig0023956:41070-41089 | Msa1412780:intron | 45.0% | |
| ! | GCGAGAGTCTGATAGTTTTC+AGG | - | tig0023956:41144-41163 | None:intergenic | 45.0% |
| GATGATATTGTCTCACGTGG+AGG | - | tig0023956:41220-41239 | None:intergenic | 45.0% | |
| CAGAGTTCAGACCTGTTCTT+TGG | - | tig0023956:41764-41783 | None:intergenic | 45.0% | |
| CAGCTCATCACACATAGAGA+TGG | - | tig0023956:41973-41992 | None:intergenic | 45.0% | |
| CATCTCTATGTGTGATGAGC+TGG | + | tig0023956:41971-41990 | Msa1412780:intron | 45.0% | |
| TGGTCCTAGGTTTCAGTCTA+AGG | + | tig0023956:41991-42010 | Msa1412780:intron | 45.0% | |
| TTATGTCATTCCTGGGGAGA+TGG | + | tig0023956:42025-42044 | Msa1412780:intron | 45.0% | |
| !!! | TGTTTTAACTGCCTCCTGCA+TGG | + | tig0023956:42061-42080 | Msa1412780:intron | 45.0% |
| ! | GATGCTGCTTGTGTAGACTT+TGG | + | tig0023956:42406-42425 | Msa1412780:intron | 45.0% |
| GCTTGTGTAGACTTTGGGTA+TGG | + | tig0023956:42412-42431 | Msa1412780:intron | 45.0% | |
| TAACCATACGCAGGATTCCA+AGG | + | tig0023956:42750-42769 | Msa1412780:CDS | 45.0% | |
| ATACCTTGGAATCCTGCGTA+TGG | - | tig0023956:42756-42775 | None:intergenic | 45.0% | |
| !! | AACTTGTTACGGCAAGTGTG+AGG | - | tig0023956:42809-42828 | None:intergenic | 45.0% |
| TCATACAGCGGCATACTTTC+TGG | - | tig0023956:42906-42925 | None:intergenic | 45.0% | |
| AGATTCTGTGAGAGAGGTGA+AGG | + | tig0023956:43143-43162 | Msa1412780:intron | 45.0% | |
| GAGGTGAAGGTGGATATTGA+TGG | + | tig0023956:43156-43175 | Msa1412780:CDS | 45.0% | |
| ACAAGTCGAATAGGGGTTCT+CGG | + | tig0023956:43253-43272 | Msa1412780:CDS | 45.0% | |
| CCAACAGCTTCTTCTTCTTC+AGG | - | tig0023956:43348-43367 | None:intergenic | 45.0% | |
| CCTGAAGAAGAAGAAGCTGT+TGG | + | tig0023956:43345-43364 | Msa1412780:CDS | 45.0% | |
| GAGTTTAGTGGCGTGTGTTG+TGG | - | tig0023956:38675-38694 | None:intergenic | 50.0% | |
| ! | AGAGAAAGTGTGAATGGCGG+TGG | + | tig0023956:38810-38829 | Msa1412780:exon | 50.0% |
| ! | ATCTTCTTGGTGGTCTTCGC+CGG | + | tig0023956:38880-38899 | Msa1412780:CDS | 50.0% |
| !! | GTCTTCGCCGGTTTAATGTC+CGG | + | tig0023956:38892-38911 | Msa1412780:CDS | 50.0% |
| GGTGAGTCCGGACATTAAAC+CGG | - | tig0023956:38902-38921 | None:intergenic | 50.0% | |
| CATGAGACCTAAGGTGAGTC+CGG | - | tig0023956:38914-38933 | None:intergenic | 50.0% | |
| AGGTAGTAGTACCTCCATGG+CGG | - | tig0023956:39246-39265 | None:intergenic | 50.0% | |
| GTGTGTTAGAGCCCTTTGTC+AGG | - | tig0023956:40049-40068 | None:intergenic | 50.0% | |
| AGGAGTGACTGATGCACCAA+TGG | - | tig0023956:40125-40144 | None:intergenic | 50.0% | |
| CATACAAGCACGCGGACAAA+AGG | - | tig0023956:40145-40164 | None:intergenic | 50.0% | |
| ! | CTTTTGTCCGCGTGCTTGTA+TGG | + | tig0023956:40143-40162 | Msa1412780:CDS | 50.0% |
| CAACTCGGCTCTACGGAAAA+GGG | - | tig0023956:40356-40375 | None:intergenic | 50.0% | |
| TCAACTCGGCTCTACGGAAA+AGG | - | tig0023956:40357-40376 | None:intergenic | 50.0% | |
| TCAGTTCCCTGCTCGGTAAT+AGG | - | tig0023956:40830-40849 | None:intergenic | 50.0% | |
| TCAGTCATCAGTTCCCTGCT+CGG | - | tig0023956:40837-40856 | None:intergenic | 50.0% | |
| TATAGGGTCAGTAGTGCCCA+AGG | - | tig0023956:41600-41619 | None:intergenic | 50.0% | |
| AGGACATTGCCCTATTGGCA+TGG | + | tig0023956:41722-41741 | Msa1412780:intron | 50.0% | |
| ATGTGTGATGAGCTGGTCCT+AGG | + | tig0023956:41978-41997 | Msa1412780:intron | 50.0% | |
| TTTGCTTCAACCATCTCCCC+AGG | - | tig0023956:42038-42057 | None:intergenic | 50.0% | |
| TTTAACTGCCTCCTGCATGG+TGG | + | tig0023956:42064-42083 | Msa1412780:intron | 50.0% | |
| ! | TCAGAAGGGGCATAGTCACA+TGG | + | tig0023956:42941-42960 | Msa1412780:CDS | 50.0% |
| TTCTGTGAGAGAGGTGAAGG+TGG | + | tig0023956:43146-43165 | Msa1412780:CDS | 50.0% | |
| TGAGGCATGCCAGCAAATCA+TGG | + | tig0023956:43800-43819 | Msa1412780:three_prime_UTR | 50.0% | |
| GTGGCGTGTGTTGTGGTAGA+TGG | - | tig0023956:38668-38687 | None:intergenic | 55.0% | |
| CCTCACGATCGTAAACACGC+CGG | + | tig0023956:38979-38998 | Msa1412780:CDS | 55.0% | |
| TAGTAGTACCTCCATGGCGG+CGG | - | tig0023956:39243-39262 | None:intergenic | 55.0% | |
| CTCACTGAGTTCAAGTGCCC+CGG | - | tig0023956:40662-40681 | None:intergenic | 55.0% | |
| !! | TTCGTAGTGGACCACCATGC+AGG | - | tig0023956:42078-42097 | None:intergenic | 55.0% |
| GAGGTGAGTAGAAGTCCCAC+AGG | - | tig0023956:42790-42809 | None:intergenic | 55.0% | |
| GGGGTTCTCGGAGCAGAAAA+TGG | + | tig0023956:43265-43284 | Msa1412780:CDS | 55.0% | |
| CCGGCGTGTTTACGATCGTG+AGG | - | tig0023956:38982-39001 | None:intergenic | 60.0% | |
| CATTTGCAATGCCGCCGCCA+TGG | + | tig0023956:39229-39248 | Msa1412780:CDS | 60.0% | |
| !! | GTAGTGGACCACCATGCAGG+AGG | - | tig0023956:42075-42094 | None:intergenic | 60.0% |
| TTGCAATGCCGCCGCCATGG+AGG | + | tig0023956:39232-39251 | Msa1412780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023956 | gene | 38622 | 43957 | 38622 | ID=Msa1412780;Name=Msa1412780 |
| tig0023956 | mRNA | 38622 | 43957 | 38622 | ID=Msa1412780-mRNA-1;Parent=Msa1412780;Name=Msa1412780-mRNA-1;_AED=0.23;_eAED=0.23;_QI=174|1|1|1|0.90|0.83|12|402|424 |
| tig0023956 | exon | 38622 | 38728 | 38622 | ID=Msa1412780-mRNA-1:exon:20811;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 38756 | 39000 | 38756 | ID=Msa1412780-mRNA-1:exon:20812;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 39177 | 39253 | 39177 | ID=Msa1412780-mRNA-1:exon:20813;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 39734 | 39817 | 39734 | ID=Msa1412780-mRNA-1:exon:20814;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 40085 | 40198 | 40085 | ID=Msa1412780-mRNA-1:exon:20815;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 40319 | 40405 | 40319 | ID=Msa1412780-mRNA-1:exon:20816;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 40613 | 40752 | 40613 | ID=Msa1412780-mRNA-1:exon:20817;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 40842 | 40929 | 40842 | ID=Msa1412780-mRNA-1:exon:20818;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 42698 | 42771 | 42698 | ID=Msa1412780-mRNA-1:exon:20819;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 42899 | 43023 | 42899 | ID=Msa1412780-mRNA-1:exon:20820;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 43145 | 43407 | 43145 | ID=Msa1412780-mRNA-1:exon:20821;Parent=Msa1412780-mRNA-1 |
| tig0023956 | exon | 43511 | 43957 | 43511 | ID=Msa1412780-mRNA-1:exon:20822;Parent=Msa1412780-mRNA-1 |
| tig0023956 | five_prime_UTR | 38622 | 38728 | 38622 | ID=Msa1412780-mRNA-1:five_prime_utr;Parent=Msa1412780-mRNA-1 |
| tig0023956 | five_prime_UTR | 38756 | 38822 | 38756 | ID=Msa1412780-mRNA-1:five_prime_utr;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 38823 | 39000 | 38823 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 39177 | 39253 | 39177 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 39734 | 39817 | 39734 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 40085 | 40198 | 40085 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 40319 | 40405 | 40319 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 40613 | 40752 | 40613 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 40842 | 40929 | 40842 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 42698 | 42771 | 42698 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 42899 | 43023 | 42899 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 43145 | 43407 | 43145 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | CDS | 43511 | 43555 | 43511 | ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1 |
| tig0023956 | three_prime_UTR | 43556 | 43957 | 43556 | ID=Msa1412780-mRNA-1:three_prime_utr;Parent=Msa1412780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
