AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412780 MtrunA17_Chr4g0049251 98.824 425 4 1 1 424 1 425 0.0 854
Msa1412780 MtrunA17_Chr2g0280251 81.163 430 74 3 1 424 1 429 0.0 676
Msa1412780 MtrunA17_Chr3g0141551 56.206 427 180 4 1 420 1 427 6.58e-165 473
Msa1412780 MtrunA17_Chr4g0065751 55.687 422 158 6 12 422 35 438 3.36e-156 450
Msa1412780 MtrunA17_Chr6g0467811 55.556 405 151 6 21 422 40 418 4.11e-149 431
Msa1412780 MtrunA17_Chr6g0469911 48.585 424 197 4 7 422 29 439 2.80e-136 399
Msa1412780 MtrunA17_Chr7g0259621 52.058 413 187 6 12 418 35 442 9.82e-136 397
Msa1412780 MtrunA17_Chr6g0469771 55.036 278 125 0 4 281 5 282 1.39e-111 329
Msa1412780 MtrunA17_Chr7g0217521 54.789 261 117 1 21 281 44 303 2.94e-96 291
Msa1412780 MtrunA17_Chr7g0217531 40.411 146 64 5 279 418 4 132 1.97e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412780 AT2G14520.4 78.960 423 88 1 1 423 1 422 0.0 683
Msa1412780 AT2G14520.1 78.960 423 88 1 1 423 1 422 0.0 683
Msa1412780 AT2G14520.2 78.960 423 82 3 1 423 1 416 0.0 673
Msa1412780 AT4G33700.1 78.454 427 86 3 1 424 1 424 0.0 672
Msa1412780 AT2G14520.3 77.353 340 76 1 84 423 1 339 0.0 536
Msa1412780 AT4G33700.3 77.035 344 73 3 84 424 1 341 0.0 530
Msa1412780 AT4G33700.2 84.342 281 44 0 1 281 1 281 1.64e-172 484
Msa1412780 AT1G47330.1 53.968 441 180 4 1 420 1 439 2.90e-162 467
Msa1412780 AT5G52790.4 55.319 423 154 4 2 422 3 392 1.03e-158 454
Msa1412780 AT5G52790.1 55.319 423 154 4 2 422 3 392 1.12e-157 455
Msa1412780 AT5G52790.3 54.988 411 150 4 2 410 3 380 3.35e-152 437
Msa1412780 AT5G52790.2 54.988 411 150 4 2 410 3 380 3.35e-152 437
Msa1412780 AT5G52790.5 54.722 413 152 4 2 412 3 382 1.74e-151 437
Msa1412780 AT4G14240.1 54.306 418 165 6 11 422 34 431 7.51e-145 422
Msa1412780 AT4G14230.1 51.816 413 185 5 11 422 33 432 2.20e-141 413
Msa1412780 AT1G03270.1 53.081 422 170 7 12 422 33 437 1.14e-139 409
Msa1412780 AT4G14240.2 53.110 418 161 7 11 422 34 422 1.21e-136 400
Msa1412780 AT1G47330.2 50.975 359 153 3 83 420 2 358 1.40e-120 358
Msa1412780 AT4G14240.3 53.179 346 136 6 83 422 2 327 1.21e-111 333
Msa1412780 AT3G13070.1 27.559 254 156 9 72 312 226 464 1.16e-13 73.6
Msa1412780 AT1G55930.1 27.843 255 154 10 72 312 221 459 1.28e-13 73.2
Msa1412780 AT1G55930.2 28.063 253 152 10 74 312 223 459 1.73e-13 72.8

Find 114 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATCAGTAATGAAATTT+AGG 0.132855 tig0023956:+43697 Msa1412780:three_prime_UTR
CTATTCGACTTGTTCGTATT+TGG 0.137170 tig0023956:-43243 None:intergenic
GAGCAGTCTACTAACATTAT+TGG 0.167034 tig0023956:+40897 Msa1412780:CDS
TCTTCTTCTTCAGGGATATT+TGG 0.182695 tig0023956:-43336 None:intergenic
ACGAAATGTTCTCGCGAAAT+AGG 0.201542 tig0023956:-43873 None:intergenic
ATAATTAGATAATGCGGTTT+AGG 0.230773 tig0023956:+43613 Msa1412780:three_prime_UTR
GGTACACTAATGTGTCTTTA+AGG 0.244640 tig0023956:+43774 Msa1412780:three_prime_UTR
CCAACAGCTTCTTCTTCTTC+AGG 0.246006 tig0023956:-43345 None:intergenic
CATATTGGTTATCATCTTCT+TGG 0.246562 tig0023956:+38867 Msa1412780:CDS
TCATACAGCGGCATACTTTC+TGG 0.250177 tig0023956:-42903 None:intergenic
CAATCAGTTTGTTCTCGATA+TGG 0.266595 tig0023956:+40094 Msa1412780:CDS
GTCACGTTGATTCTTCTCTT+TGG 0.274630 tig0023956:+39791 Msa1412780:CDS
CGTATGGTTACACTCTTTAC+AGG 0.295718 tig0023956:-42737 None:intergenic
TAATTAGATAATGCGGTTTA+GGG 0.299088 tig0023956:+43614 Msa1412780:three_prime_UTR
ATGTATGTCACCTTGCTAAT+TGG 0.301980 tig0023956:-40187 None:intergenic
TTTACAGGCGATTCATCTTC+TGG 0.305252 tig0023956:-42722 None:intergenic
ATAGTTGATACCTACTTGTT+TGG 0.306426 tig0023956:+43842 Msa1412780:three_prime_UTR
GTGGCGTGTGTTGTGGTAGA+TGG 0.308908 tig0023956:-38665 None:intergenic
CCAGTTGTTAGACTATTTGC+TGG 0.312154 tig0023956:+40315 Msa1412780:intron
TGATAGTCTTGTTACTGCTT+GGG 0.319831 tig0023956:+39751 Msa1412780:CDS
GAAAAGTAGTTAGAGTTTAG+TGG 0.336161 tig0023956:-38684 None:intergenic
GGAACTGATGACTGAAATAT+TGG 0.341934 tig0023956:+40842 Msa1412780:CDS
TTGATAGTCTTGTTACTGCT+TGG 0.343981 tig0023956:+39750 Msa1412780:CDS
AACATCAGTAATGAAATTTA+GGG 0.345408 tig0023956:+43698 Msa1412780:three_prime_UTR
CAAATACGAACAAGTCGAAT+AGG 0.348065 tig0023956:+43244 Msa1412780:CDS
TAACATTATTGGATTAATAC+TGG 0.362806 tig0023956:+40908 Msa1412780:CDS
GGAGTTCTTCATCCACATAT+TGG 0.363983 tig0023956:+38852 Msa1412780:CDS
ATAGCAAATGTTTCAGATAT+AGG 0.364291 tig0023956:-40706 None:intergenic
AAATACGAACAAGTCGAATA+GGG 0.365943 tig0023956:+43245 Msa1412780:CDS
TCAACTCGGCTCTACGGAAA+AGG 0.383543 tig0023956:-40354 None:intergenic
CTTGAAGTTCTTGCTAAGTC+TGG 0.388705 tig0023956:+38952 Msa1412780:CDS
TTGCTAATTGGAAAAGCAAC+TGG 0.400425 tig0023956:-40175 None:intergenic
ATCTTCTTGGTGGTCTTCGC+CGG 0.401529 tig0023956:+38880 Msa1412780:CDS
GATGAAACAACAATAATTGC+CGG 0.410016 tig0023956:+40640 Msa1412780:CDS
CAACAGCTTCTTCTTCTTCA+GGG 0.421642 tig0023956:-43344 None:intergenic
TGGGTTTCAAGACTTTCTCT+TGG 0.427213 tig0023956:-43191 None:intergenic
CATTTGCAATGCCGCCGCCA+TGG 0.428491 tig0023956:+39229 Msa1412780:CDS
TTCTGTGAGAGAGGTGAAGG+TGG 0.428661 tig0023956:+43146 Msa1412780:CDS
ATATTAATTCGAAGCTTGAT+AGG 0.428680 tig0023956:+40731 Msa1412780:CDS
ATATCGAGAACAAACTGATT+GGG 0.432835 tig0023956:-40092 None:intergenic
TTAATGTCCGGACTCACCTT+AGG 0.436067 tig0023956:+38904 Msa1412780:CDS
AGAGAAAGTGTGAATGGCGG+TGG 0.439640 tig0023956:+38810 Msa1412780:exon
GAATCAACGTGACTGAAATC+AGG 0.439998 tig0023956:-39781 None:intergenic
AGTTTGTTCTCGATATGGTT+TGG 0.445684 tig0023956:+40099 Msa1412780:CDS
ATTGGTTATCATCTTCTTGG+TGG 0.446975 tig0023956:+38870 Msa1412780:CDS
TCTCGATATGGTTTGGCCAT+TGG 0.452760 tig0023956:+40106 Msa1412780:CDS
CATATCGAGAACAAACTGAT+TGG 0.460455 tig0023956:-40093 None:intergenic
GGTGAGTCCGGACATTAAAC+CGG 0.461990 tig0023956:-38899 None:intergenic
CAACTCGGCTCTACGGAAAA+GGG 0.462073 tig0023956:-40353 None:intergenic
AAATGCTGATTTCTCACAAC+AGG 0.462976 tig0023956:-39188 None:intergenic
GTCTTCGCCGGTTTAATGTC+CGG 0.465784 tig0023956:+38892 Msa1412780:CDS
CATACAAGCACGCGGACAAA+AGG 0.470475 tig0023956:-40142 None:intergenic
TTGTATTAGGCTGGAAAAGG+TGG 0.472607 tig0023956:+40604 Msa1412780:intron
AGATTCTGTGAGAGAGGTGA+AGG 0.479457 tig0023956:+43143 Msa1412780:intron
TTCAAGACTTTCTCTTGGAG+AGG 0.484352 tig0023956:-43186 None:intergenic
GGGGTTCTCGGAGCAGAAAA+TGG 0.486966 tig0023956:+43265 Msa1412780:CDS
CTTCTTCAGGGATATTTGGA+AGG 0.495785 tig0023956:-43332 None:intergenic
ACAAGTCGAATAGGGGTTCT+CGG 0.497243 tig0023956:+43253 Msa1412780:CDS
CAGTTGTTAGACTATTTGCT+GGG 0.503149 tig0023956:+40316 Msa1412780:intron
GGAATACACATGCTGCGAAT+CGG 0.507074 tig0023956:+38831 Msa1412780:CDS
GAATTGTATTAGGCTGGAAA+AGG 0.507317 tig0023956:+40601 Msa1412780:intron
CCAAGATACCAATCCAAAAG+TGG 0.512266 tig0023956:+43211 Msa1412780:CDS
GTAGACTGCTCATAAAAGAC+TGG 0.512510 tig0023956:-40885 None:intergenic
ATGAAACAACAATAATTGCC+GGG 0.518788 tig0023956:+40641 Msa1412780:CDS
TGTATTAGGCTGGAAAAGGT+GGG 0.520587 tig0023956:+40605 Msa1412780:intron
TTCTTCAGGGATATTTGGAA+GGG 0.520911 tig0023956:-43331 None:intergenic
CATGAGACCTAAGGTGAGTC+CGG 0.527621 tig0023956:-38911 None:intergenic
GATAGTCTTGTTACTGCTTG+GGG 0.531398 tig0023956:+39752 Msa1412780:CDS
TAAAATAGATTCTGTGAGAG+AGG 0.536381 tig0023956:+43137 Msa1412780:intron
CCTGAAGAAGAAGAAGCTGT+TGG 0.542971 tig0023956:+43345 Msa1412780:CDS
AGTAGATTTGCATGGTAATG+AGG 0.545332 tig0023956:+40384 Msa1412780:CDS
ATGACTGAAATATTGGAGAA+AGG 0.546165 tig0023956:+40849 Msa1412780:CDS
AGAAGATGATAACCAATATG+TGG 0.546494 tig0023956:-38864 None:intergenic
TGAGGCATGCCAGCAAATCA+TGG 0.553917 tig0023956:+43800 Msa1412780:three_prime_UTR
GAGGTGAAGGTGGATATTGA+TGG 0.556091 tig0023956:+43156 Msa1412780:CDS
TATAGGAGTCATAGCATCAC+TGG 0.563065 tig0023956:-40689 None:intergenic
AGGAGTGACTGATGCACCAA+TGG 0.564195 tig0023956:-40122 None:intergenic
GGAATGTAATCCAAACAAGT+AGG 0.566031 tig0023956:-43852 None:intergenic
GAAACAAATGAAGTCGGTGA+TGG 0.567511 tig0023956:+38759 Msa1412780:five_prime_UTR
GAAGAGAGAGAAAGTGTGAA+TGG 0.568383 tig0023956:+38804 Msa1412780:exon
GTTGATTCTTCTCTTTGGTG+AGG 0.574660 tig0023956:+39796 Msa1412780:CDS
TAACCATACGCAGGATTCCA+AGG 0.576381 tig0023956:+42750 Msa1412780:CDS
TAGTAGTACCTCCATGGCGG+CGG 0.577933 tig0023956:-39240 None:intergenic
CTCACTGAGTTCAAGTGCCC+CGG 0.578508 tig0023956:-40659 None:intergenic
GAGTTTAGTGGCGTGTGTTG+TGG 0.578971 tig0023956:-38672 None:intergenic
TCTTCAGGGATATTTGGAAG+GGG 0.580165 tig0023956:-43330 None:intergenic
TGATGTTCTAATCACACCTC+AGG 0.580514 tig0023956:-43682 None:intergenic
ATACCTTGGAATCCTGCGTA+TGG 0.590163 tig0023956:-42753 None:intergenic
ACTGAGAGACATGAGACCTA+AGG 0.612493 tig0023956:-38920 None:intergenic
AATACGAACAAGTCGAATAG+GGG 0.612720 tig0023956:+43246 Msa1412780:CDS
AAAACACTAGTAGATTTGCA+TGG 0.612993 tig0023956:+40376 Msa1412780:CDS
AAATAAGAAACAAATGAAGT+CGG 0.619536 tig0023956:+38753 Msa1412780:intron
ACATTTCGTGAATTTGACCA+AGG 0.620717 tig0023956:+43887 Msa1412780:three_prime_UTR
AAGAGGTAGTAGTACCTCCA+TGG 0.621063 tig0023956:-39246 None:intergenic
CAATAGATAATTAGATAATG+CGG 0.621446 tig0023956:+43607 Msa1412780:three_prime_UTR
AGCTGTTGGAATAATTACAA+TGG 0.624823 tig0023956:+43359 Msa1412780:CDS
ATCGCATTGTCGTACAACAA+CGG 0.629829 tig0023956:-42964 None:intergenic
TGTTGGAATAATTACAATGG+AGG 0.632047 tig0023956:+43362 Msa1412780:CDS
TATCGAGAACAAACTGATTG+GGG 0.632512 tig0023956:-40091 None:intergenic
TAGACTGCTCATAAAAGACT+GGG 0.648315 tig0023956:-40884 None:intergenic
GTATTAGGCTGGAAAAGGTG+GGG 0.650287 tig0023956:+40606 Msa1412780:intron
TCAGAAGGGGCATAGTCACA+TGG 0.652219 tig0023956:+42941 Msa1412780:CDS
GTGATGGAACTCATCTGAAG+CGG 0.654741 tig0023956:+38775 Msa1412780:five_prime_UTR
CCGGCGTGTTTACGATCGTG+AGG 0.657033 tig0023956:-38979 None:intergenic
AATGTGTCTTTAAGGCAATG+AGG 0.660021 tig0023956:+43782 Msa1412780:three_prime_UTR
TAAAGAGTGTAACCATACGC+AGG 0.665814 tig0023956:+42741 Msa1412780:CDS
TTGCAATGCCGCCGCCATGG+AGG 0.672226 tig0023956:+39232 Msa1412780:CDS
AGCTGCTGTTTAGATATCTG+AGG 0.672963 tig0023956:+43641 Msa1412780:three_prime_UTR
TGAAACAACAATAATTGCCG+GGG 0.673538 tig0023956:+40642 Msa1412780:CDS
GAGAGAGAAAGTGTGAATGG+CGG 0.680617 tig0023956:+38807 Msa1412780:exon
TCATTCAAAATGTCATACAG+CGG 0.722071 tig0023956:-42915 None:intergenic
AACATATCCATACAAGCACG+CGG 0.727396 tig0023956:-40150 None:intergenic
AGGTAGTAGTACCTCCATGG+CGG 0.742514 tig0023956:-39243 None:intergenic
CCTCACGATCGTAAACACGC+CGG 0.756533 tig0023956:+38979 Msa1412780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTCCAATAAATAAAAT+TGG - tig0023956:39066-39085 None:intergenic 10.0%
!!! TGAATTTTTATTAAAAAAGA+AGG - tig0023956:41048-41067 None:intergenic 10.0%
!!! TTTTTAATAAAAATTCAATG+TGG + tig0023956:41051-41070 Msa1412780:intron 10.0%
!!! TTATGCATTTATTATTGATT+TGG + tig0023956:39118-39137 Msa1412780:intron 15.0%
!! AATAAGCTTAAAATAGATTA+TGG - tig0023956:39310-39329 None:intergenic 15.0%
!!! TGATTATGTATAACTATTTT+TGG - tig0023956:39484-39503 None:intergenic 15.0%
!!! AGCTTTAATACTTTTTATAT+TGG + tig0023956:39943-39962 Msa1412780:intron 15.0%
!!! TACTTTTATTTGAATAAACA+AGG + tig0023956:40226-40245 Msa1412780:intron 15.0%
!! TTTAATTGCAAAAATAACTT+TGG - tig0023956:42382-42401 None:intergenic 15.0%
!!! AAATAAATAATGTAGTTTTG+AGG - tig0023956:42442-42461 None:intergenic 15.0%
!! AAAAAATATAGAGAAAAGAA+TGG - tig0023956:42571-42590 None:intergenic 15.0%
!!! TCATTTGTTTCTTATTTAAG+AGG - tig0023956:38750-38769 None:intergenic 20.0%
!! AAATAAGAAACAAATGAAGT+CGG + tig0023956:38753-38772 Msa1412780:intron 20.0%
!! CCAATAAATAAAATTGGATA+CGG - tig0023956:39060-39079 None:intergenic 20.0%
!!! CTTATTTTCATAAAATCTTC+AGG + tig0023956:39324-39343 Msa1412780:intron 20.0%
!! AATTTGTCTTCAATAAAAGA+GGG - tig0023956:39458-39477 None:intergenic 20.0%
!!! TAATTTGTCTTCAATAAAAG+AGG - tig0023956:39459-39478 None:intergenic 20.0%
!! ATTTGTATGTTGTTCTTATA+TGG + tig0023956:39565-39584 Msa1412780:intron 20.0%
!! TCAATACTAATATTCAAAGA+AGG + tig0023956:39597-39616 Msa1412780:intron 20.0%
!! AATATTCAAAGAAGGTTATA+TGG + tig0023956:39605-39624 Msa1412780:intron 20.0%
!! TATTTCAGTTGAAACATATA+GGG - tig0023956:39836-39855 None:intergenic 20.0%
!!! TTTTATTTGAATAAACAAGG+AGG + tig0023956:40229-40248 Msa1412780:intron 20.0%
!! TAACATTATTGGATTAATAC+TGG + tig0023956:40908-40927 Msa1412780:CDS 20.0%
!!! TCTTAATAACCAGATATTTT+AGG + tig0023956:41390-41409 Msa1412780:intron 20.0%
!!! CTTAATAACCAGATATTTTA+GGG + tig0023956:41391-41410 Msa1412780:intron 20.0%
!! TAGGGAATTGAATAAATTAT+TGG + tig0023956:41409-41428 Msa1412780:intron 20.0%
!! TAATTAGAGGAGATATTATA+GGG - tig0023956:41616-41635 None:intergenic 20.0%
!! TTAATTAGAGGAGATATTAT+AGG - tig0023956:41617-41636 None:intergenic 20.0%
!!! AATTAATATTTTCTCCTGTT+AGG + tig0023956:41631-41650 Msa1412780:intron 20.0%
!! GATATAGCAGATAAAATAAT+TGG + tig0023956:42224-42243 Msa1412780:intron 20.0%
!!! TACATTATTTATTTTCTCGT+TGG + tig0023956:42448-42467 Msa1412780:intron 20.0%
!!! ACATTATTTATTTTCTCGTT+GGG + tig0023956:42449-42468 Msa1412780:intron 20.0%
!!! TTGGTACTATTTTATATGTT+AGG + tig0023956:42533-42552 Msa1412780:intron 20.0%
!! TTAAACAAGTGTTCAAATTA+TGG - tig0023956:42861-42880 None:intergenic 20.0%
!! TTAAAATTACATATGTTGAC+AGG + tig0023956:42877-42896 Msa1412780:intron 20.0%
!! TAAAATTACATATGTTGACA+GGG + tig0023956:42878-42897 Msa1412780:intron 20.0%
!!! ATATTTTAATTAGATCTCGT+TGG + tig0023956:43069-43088 Msa1412780:intron 20.0%
!! CAATAGATAATTAGATAATG+CGG + tig0023956:43607-43626 Msa1412780:three_prime_UTR 20.0%
!! AACATCAGTAATGAAATTTA+GGG + tig0023956:43698-43717 Msa1412780:three_prime_UTR 20.0%
!!! TGGAGTTTTTTAATATTAGC+TGG - tig0023956:38648-38667 None:intergenic 25.0%
!!! CCGTATCCAATTTTATTTAT+TGG + tig0023956:39057-39076 Msa1412780:intron 25.0%
! TCAAAAAAATCGATGAAAAG+AGG - tig0023956:39266-39285 None:intergenic 25.0%
! CATGCGATTTCAATAAAAAA+GGG - tig0023956:39435-39454 None:intergenic 25.0%
! ATTCGTGTAATATTCAAAGA+AGG + tig0023956:39525-39544 Msa1412780:intron 25.0%
! CTTTGTATGTTGTTCTTATA+TGG + tig0023956:39674-39693 Msa1412780:intron 25.0%
! ACAAGACTATCAAGAAAAAT+AGG - tig0023956:39743-39762 None:intergenic 25.0%
! GTATTTCAGTTGAAACATAT+AGG - tig0023956:39837-39856 None:intergenic 25.0%
! TGTATATCATGTTATCTTGA+TGG + tig0023956:39858-39877 Msa1412780:intron 25.0%
! AGAGATCCTTGAAAATTTAT+GGG - tig0023956:39894-39913 None:intergenic 25.0%
! ATACAAGAACACTAAGATAT+AGG - tig0023956:40019-40038 None:intergenic 25.0%
! ACTGAGAAGAAAAGAAAAAT+AGG - tig0023956:40275-40294 None:intergenic 25.0%
! GTTCATGATTGAATTGTATT+AGG + tig0023956:40591-40610 Msa1412780:intron 25.0%
! ATAGCAAATGTTTCAGATAT+AGG - tig0023956:40709-40728 None:intergenic 25.0%
! ATATTAATTCGAAGCTTGAT+AGG + tig0023956:40731-40750 Msa1412780:CDS 25.0%
! TTTGATCGAACAGTAAAAAA+TGG - tig0023956:41113-41132 None:intergenic 25.0%
! TGAAATGGTATTATCTAGTA+TGG - tig0023956:41326-41345 None:intergenic 25.0%
! TACTAGATAATACCATTTCA+TGG + tig0023956:41326-41345 Msa1412780:intron 25.0%
! ATAATACCATTTCATGGAAT+TGG + tig0023956:41332-41351 Msa1412780:intron 25.0%
! ATTCAATTCCCTAAAATATC+TGG - tig0023956:41402-41421 None:intergenic 25.0%
! AAGAAAATAAACAAATGCTG+TGG + tig0023956:41484-41503 Msa1412780:intron 25.0%
! TATATGTAAACTTTCTACCT+TGG + tig0023956:41580-41599 Msa1412780:intron 25.0%
! ATATGTAAACTTTCTACCTT+GGG + tig0023956:41581-41600 Msa1412780:intron 25.0%
! CAGGAGAAAATATTAATTAG+AGG - tig0023956:41629-41648 None:intergenic 25.0%
! TAGAAAATAAGATTCCTAAC+AGG - tig0023956:41648-41667 None:intergenic 25.0%
! TATCTTAACACAGTCTAAAA+TGG - tig0023956:41697-41716 None:intergenic 25.0%
! AGATGGAAATAATGTTTCTT+AGG + tig0023956:41804-41823 Msa1412780:intron 25.0%
! AGCAAGAAAAGTCATTTATA+TGG + tig0023956:41929-41948 Msa1412780:intron 25.0%
!!! TTAAGAGTGTTATTTGGTTA+TGG - tig0023956:42122-42141 None:intergenic 25.0%
! ATAACCAAATAACACTCTTA+AGG + tig0023956:42121-42140 Msa1412780:intron 25.0%
! TACACAAGTCATAATATACA+AGG + tig0023956:42268-42287 Msa1412780:intron 25.0%
! ACACAAGTCATAATATACAA+GGG + tig0023956:42269-42288 Msa1412780:intron 25.0%
! AAATAAAGAATGCATGATGT+AGG - tig0023956:42496-42515 None:intergenic 25.0%
! GCACATATTCAGAAATTAAA+AGG - tig0023956:42665-42684 None:intergenic 25.0%
!!! GTACATTATGAAACTTGTTA+CGG - tig0023956:42820-42839 None:intergenic 25.0%
! AGTTTCATAATGTACTTAGT+TGG + tig0023956:42825-42844 Msa1412780:intron 25.0%
!! ATTTTGAATGAGTTTCAGAA+GGG + tig0023956:42927-42946 Msa1412780:CDS 25.0%
!!! TTTGAATCATTTTTGGAAGA+TGG - tig0023956:43002-43021 None:intergenic 25.0%
! TCTTCCAAAAATGATTCAAA+TGG + tig0023956:43002-43021 Msa1412780:CDS 25.0%
!! CTTACCATTTGAATCATTTT+TGG - tig0023956:43009-43028 None:intergenic 25.0%
!!! TCAGATATTTTAGAGATAGA+TGG + tig0023956:43303-43322 Msa1412780:CDS 25.0%
! ATAATTAGATAATGCGGTTT+AGG + tig0023956:43613-43632 Msa1412780:three_prime_UTR 25.0%
! TAATTAGATAATGCGGTTTA+GGG + tig0023956:43614-43633 Msa1412780:three_prime_UTR 25.0%
! GAACATCAGTAATGAAATTT+AGG + tig0023956:43697-43716 Msa1412780:three_prime_UTR 25.0%
!!! TTTCTTTTTAGAGATGTATG+CGG + tig0023956:43753-43772 Msa1412780:three_prime_UTR 25.0%
!! AAAAATATACCATGATTTGC+TGG - tig0023956:43812-43831 None:intergenic 25.0%
GAAAAGTAGTTAGAGTTTAG+TGG - tig0023956:38687-38706 None:intergenic 30.0%
AGAAGATGATAACCAATATG+TGG - tig0023956:38867-38886 None:intergenic 30.0%
! CATATTGGTTATCATCTTCT+TGG + tig0023956:38867-38886 Msa1412780:CDS 30.0%
GCATGCGATTTCAATAAAAA+AGG - tig0023956:39436-39455 None:intergenic 30.0%
CAGTATTCAATAGTATTCGA+AGG + tig0023956:39631-39650 Msa1412780:intron 30.0%
TATTCAATAGTATTCGAAGG+AGG + tig0023956:39634-39653 Msa1412780:intron 30.0%
GGATTTAGTATTCAAAACCA+TGG + tig0023956:39695-39714 Msa1412780:intron 30.0%
GAGAGATCCTTGAAAATTTA+TGG - tig0023956:39895-39914 None:intergenic 30.0%
TGTATATCATTTCCTGACAA+AGG + tig0023956:40034-40053 Msa1412780:intron 30.0%
GTATATCATTTCCTGACAAA+GGG + tig0023956:40035-40054 Msa1412780:intron 30.0%
ATATCGAGAACAAACTGATT+GGG - tig0023956:40095-40114 None:intergenic 30.0%
! ATCTACTAGTGTTTTCAACT+CGG - tig0023956:40371-40390 None:intergenic 30.0%
AAAACACTAGTAGATTTGCA+TGG + tig0023956:40376-40395 Msa1412780:CDS 30.0%
ATATATGTGTACTTCTCTTC+TGG + tig0023956:40517-40536 Msa1412780:intron 30.0%
ATGATTGAATTGTATTAGGC+TGG + tig0023956:40595-40614 Msa1412780:intron 30.0%
GATGAAACAACAATAATTGC+CGG + tig0023956:40640-40659 Msa1412780:CDS 30.0%
ATGAAACAACAATAATTGCC+GGG + tig0023956:40641-40660 Msa1412780:CDS 30.0%
ATGACTGAAATATTGGAGAA+AGG + tig0023956:40849-40868 Msa1412780:CDS 30.0%
! TACAGCATCTTTTCATCTAA+TGG - tig0023956:40987-41006 None:intergenic 30.0%
!! TCTTAGACAACTTAAGTTGA+AGG + tig0023956:41291-41310 Msa1412780:intron 30.0%
!! CTTAGACAACTTAAGTTGAA+GGG + tig0023956:41292-41311 Msa1412780:intron 30.0%
AATGGTATTATCTAGTATGG+AGG - tig0023956:41323-41342 None:intergenic 30.0%
AAAATTGTGCGTCATGTTAT+TGG + tig0023956:41535-41554 Msa1412780:intron 30.0%
GACTGTGTTAAGATATTAAG+AGG + tig0023956:41702-41721 Msa1412780:intron 30.0%
ATTTCTACTAACCAAAGAAC+AGG + tig0023956:41750-41769 Msa1412780:intron 30.0%
TGTGATATTTATGTCATTCC+TGG + tig0023956:42017-42036 Msa1412780:intron 30.0%
GTGATATTTATGTCATTCCT+GGG + tig0023956:42018-42037 Msa1412780:intron 30.0%
TGATATTTATGTCATTCCTG+GGG + tig0023956:42019-42038 Msa1412780:intron 30.0%
!! GAAACCTTAAGAGTGTTATT+TGG - tig0023956:42128-42147 None:intergenic 30.0%
AGCGATATATATCTTACTAG+TGG - tig0023956:42182-42201 None:intergenic 30.0%
! ATATATCGCTTTCAAGTCTT+CGG + tig0023956:42192-42211 Msa1412780:intron 30.0%
AGGATATATACAAGATACCT+TGG - tig0023956:42770-42789 None:intergenic 30.0%
GTATCTTGTATATATCCTGT+GGG + tig0023956:42772-42791 Msa1412780:intron 30.0%
TCATTCAAAATGTCATACAG+CGG - tig0023956:42918-42937 None:intergenic 30.0%
! CATTTTGAATGAGTTTCAGA+AGG + tig0023956:42926-42945 Msa1412780:CDS 30.0%
! TTTTGAATGAGTTTCAGAAG+GGG + tig0023956:42928-42947 Msa1412780:CDS 30.0%
TAAAATAGATTCTGTGAGAG+AGG + tig0023956:43137-43156 Msa1412780:intron 30.0%
AAATACGAACAAGTCGAATA+GGG + tig0023956:43245-43264 Msa1412780:CDS 30.0%
AGCTGTTGGAATAATTACAA+TGG + tig0023956:43359-43378 Msa1412780:CDS 30.0%
TGTTGGAATAATTACAATGG+AGG + tig0023956:43362-43381 Msa1412780:CDS 30.0%
! TGTTATTGAAGAGCTTTTAC+AGG + tig0023956:43386-43405 Msa1412780:CDS 30.0%
!! ATTTTGAAGACTCATGACAA+TGG + tig0023956:43539-43558 Msa1412780:exon 30.0%
! TTCATTAAACCTAGCGTTTT+TGG + tig0023956:43566-43585 Msa1412780:three_prime_UTR 30.0%
!!! GTTTTTGGAATTTCGTTGTT+TGG + tig0023956:43581-43600 Msa1412780:three_prime_UTR 30.0%
! ATAGTTGATACCTACTTGTT+TGG + tig0023956:43842-43861 Msa1412780:three_prime_UTR 30.0%
ATTGGTTATCATCTTCTTGG+TGG + tig0023956:38870-38889 Msa1412780:CDS 35.0%
AGTTAGTTACGTTACGTTAC+CGG - tig0023956:39001-39020 None:intergenic 35.0%
CTTTAGCAGCTTCATGTTAT+TGG + tig0023956:39093-39112 Msa1412780:intron 35.0%
!! AAATGCTGATTTCTCACAAC+AGG - tig0023956:39191-39210 None:intergenic 35.0%
GTATTCAAAACCATGGTTGT+TGG + tig0023956:39702-39721 Msa1412780:intron 35.0%
!! TTGATAGTCTTGTTACTGCT+TGG + tig0023956:39750-39769 Msa1412780:CDS 35.0%
!! TGATAGTCTTGTTACTGCTT+GGG + tig0023956:39751-39770 Msa1412780:CDS 35.0%
! CTTCGTCCCATAAATTTTCA+AGG + tig0023956:39885-39904 Msa1412780:intron 35.0%
CAACATTCAATATGACCCTA+GGG - tig0023956:39917-39936 None:intergenic 35.0%
TATCGAGAACAAACTGATTG+GGG - tig0023956:40094-40113 None:intergenic 35.0%
CATATCGAGAACAAACTGAT+TGG - tig0023956:40096-40115 None:intergenic 35.0%
! CAATCAGTTTGTTCTCGATA+TGG + tig0023956:40094-40113 Msa1412780:CDS 35.0%
! AGTTTGTTCTCGATATGGTT+TGG + tig0023956:40099-40118 Msa1412780:CDS 35.0%
TTGCTAATTGGAAAAGCAAC+TGG - tig0023956:40178-40197 None:intergenic 35.0%
!!! AGTTGCTTTTCCAATTAGCA+AGG + tig0023956:40177-40196 Msa1412780:CDS 35.0%
ATGTATGTCACCTTGCTAAT+TGG - tig0023956:40190-40209 None:intergenic 35.0%
CAGTTGTTAGACTATTTGCT+GGG + tig0023956:40316-40335 Msa1412780:intron 35.0%
! AGTAGATTTGCATGGTAATG+AGG + tig0023956:40384-40403 Msa1412780:CDS 35.0%
! GTTCTTTTTAACACTGCACT+TGG + tig0023956:40539-40558 Msa1412780:intron 35.0%
TTGGAATTCATGCTTACACA+TGG + tig0023956:40558-40577 Msa1412780:intron 35.0%
GAATTGTATTAGGCTGGAAA+AGG + tig0023956:40601-40620 Msa1412780:intron 35.0%
TGAAACAACAATAATTGCCG+GGG + tig0023956:40642-40661 Msa1412780:CDS 35.0%
TTAAATACCTATTACCGAGC+AGG + tig0023956:40820-40839 Msa1412780:intron 35.0%
TAAATACCTATTACCGAGCA+GGG + tig0023956:40821-40840 Msa1412780:intron 35.0%
GGAACTGATGACTGAAATAT+TGG + tig0023956:40842-40861 Msa1412780:CDS 35.0%
TAGACTGCTCATAAAAGACT+GGG - tig0023956:40887-40906 None:intergenic 35.0%
GAGCAGTCTACTAACATTAT+TGG + tig0023956:40897-40916 Msa1412780:CDS 35.0%
TGTAAAAACCACATACAGCT+TGG + tig0023956:41003-41022 Msa1412780:intron 35.0%
TATCCTGAGGATTAATATGC+AGG + tig0023956:41083-41102 Msa1412780:intron 35.0%
!!! TCTCGCGATTCACTTTTTTA+AGG + tig0023956:41158-41177 Msa1412780:intron 35.0%
! TGGAGTTGATTACAGATGAT+AGG + tig0023956:41555-41574 Msa1412780:intron 35.0%
!!! TTTCATTTTAGAGCCGTAAG+TGG + tig0023956:41671-41690 Msa1412780:intron 35.0%
AAATTCTAGCCATGCCAATA+GGG - tig0023956:41734-41753 None:intergenic 35.0%
CTGAAATATTTAGAGAGCAG+AGG + tig0023956:41781-41800 Msa1412780:intron 35.0%
! CAAATGTTTCTTTTCAGCTG+TGG + tig0023956:41885-41904 Msa1412780:intron 35.0%
ATACTAAGATCGTTTCGTAG+TGG - tig0023956:42091-42110 None:intergenic 35.0%
! TTCTGAGAGCTGTAATTTGA+TGG + tig0023956:42145-42164 Msa1412780:intron 35.0%
! TATATCGCTTTCAAGTCTTC+GGG + tig0023956:42193-42212 Msa1412780:intron 35.0%
GTCATAATATACAAGGGTTC+TGG + tig0023956:42275-42294 Msa1412780:intron 35.0%
! ACAACTGGCTTAACTAATGA+TGG - tig0023956:42309-42328 None:intergenic 35.0%
TAAGCCAGTTGTGATATTTG+TGG + tig0023956:42317-42336 Msa1412780:intron 35.0%
ACAACCACAAATATCACAAC+TGG - tig0023956:42324-42343 None:intergenic 35.0%
! GAACACATGTACTCGATTTT+AGG + tig0023956:42345-42364 Msa1412780:intron 35.0%
AAGAATGCATGATGTAGGTA+TGG - tig0023956:42491-42510 None:intergenic 35.0%
TTTGTTCCTACGATTCTGTT+TGG + tig0023956:42514-42533 Msa1412780:intron 35.0%
ATAGTACCAAACAGAATCGT+AGG - tig0023956:42523-42542 None:intergenic 35.0%
GGTATCTTGTATATATCCTG+TGG + tig0023956:42771-42790 Msa1412780:intron 35.0%
!! ATTTTTGGAAGATGGTTGCT+TGG - tig0023956:42994-43013 None:intergenic 35.0%
!!! CACTTTTGGATTGGTATCTT+GGG - tig0023956:43213-43232 None:intergenic 35.0%
!! AAGCTTTTCCACTTTTGGAT+TGG - tig0023956:43222-43241 None:intergenic 35.0%
! TTGGAAAGCTTTTCCACTTT+TGG - tig0023956:43227-43246 None:intergenic 35.0%
! CTATTCGACTTGTTCGTATT+TGG - tig0023956:43246-43265 None:intergenic 35.0%
CAAATACGAACAAGTCGAAT+AGG + tig0023956:43244-43263 Msa1412780:CDS 35.0%
AATACGAACAAGTCGAATAG+GGG + tig0023956:43246-43265 Msa1412780:CDS 35.0%
TTCTTCAGGGATATTTGGAA+GGG - tig0023956:43334-43353 None:intergenic 35.0%
TCTTCTTCTTCAGGGATATT+TGG - tig0023956:43339-43358 None:intergenic 35.0%
TTCTACCAAGATTTCAAGAG+TGG - tig0023956:43441-43460 None:intergenic 35.0%
!! ACTCACGTCTATTTTTCTGT+AGG + tig0023956:43489-43508 Msa1412780:intron 35.0%
AACGAAATTCCAAAAACGCT+AGG - tig0023956:43578-43597 None:intergenic 35.0%
TTCCTTCAAAAAGATACCTG+AGG + tig0023956:43666-43685 Msa1412780:three_prime_UTR 35.0%
GGTACACTAATGTGTCTTTA+AGG + tig0023956:43774-43793 Msa1412780:three_prime_UTR 35.0%
!! AATGTGTCTTTAAGGCAATG+AGG + tig0023956:43782-43801 Msa1412780:three_prime_UTR 35.0%
GGAATGTAATCCAAACAAGT+AGG - tig0023956:43855-43874 None:intergenic 35.0%
ACATTTCGTGAATTTGACCA+AGG + tig0023956:43887-43906 Msa1412780:three_prime_UTR 35.0%
! ATCGCTATGTATTTTCTCCT+TGG - tig0023956:43907-43926 None:intergenic 35.0%
GAAACAAATGAAGTCGGTGA+TGG + tig0023956:38759-38778 Msa1412780:five_prime_UTR 40.0%
! GAAGAGAGAGAAAGTGTGAA+TGG + tig0023956:38804-38823 Msa1412780:exon 40.0%
GGAGTTCTTCATCCACATAT+TGG + tig0023956:38852-38871 Msa1412780:CDS 40.0%
CTTGAAGTTCTTGCTAAGTC+TGG + tig0023956:38952-38971 Msa1412780:CDS 40.0%
CCTGAAAAAACCAACAACCA+TGG - tig0023956:39715-39734 None:intergenic 40.0%
!!! CCATGGTTGTTGGTTTTTTC+AGG + tig0023956:39712-39731 Msa1412780:intron 40.0%
!! GATAGTCTTGTTACTGCTTG+GGG + tig0023956:39752-39771 Msa1412780:CDS 40.0%
GAATCAACGTGACTGAAATC+AGG - tig0023956:39784-39803 None:intergenic 40.0%
!! GTCACGTTGATTCTTCTCTT+TGG + tig0023956:39791-39810 Msa1412780:CDS 40.0%
! GTTGATTCTTCTCTTTGGTG+AGG + tig0023956:39796-39815 Msa1412780:CDS 40.0%
!! ATTTTCAAGGATCTCTCCCT+AGG + tig0023956:39898-39917 Msa1412780:intron 40.0%
!! TTTTCAAGGATCTCTCCCTA+GGG + tig0023956:39899-39918 Msa1412780:intron 40.0%
CCAACATTCAATATGACCCT+AGG - tig0023956:39918-39937 None:intergenic 40.0%
CCTAGGGTCATATTGAATGT+TGG + tig0023956:39915-39934 Msa1412780:intron 40.0%
AACATATCCATACAAGCACG+CGG - tig0023956:40153-40172 None:intergenic 40.0%
CCAGCAAATAGTCTAACAAC+TGG - tig0023956:40318-40337 None:intergenic 40.0%
CCAGTTGTTAGACTATTTGC+TGG + tig0023956:40315-40334 Msa1412780:intron 40.0%
AGCGACTGAAATGTCACTAA+AGG + tig0023956:40494-40513 Msa1412780:intron 40.0%
TTCATGCTTACACATGGTTG+TGG + tig0023956:40564-40583 Msa1412780:intron 40.0%
TTGTATTAGGCTGGAAAAGG+TGG + tig0023956:40604-40623 Msa1412780:intron 40.0%
TGTATTAGGCTGGAAAAGGT+GGG + tig0023956:40605-40624 Msa1412780:intron 40.0%
TATAGGAGTCATAGCATCAC+TGG - tig0023956:40692-40711 None:intergenic 40.0%
GTAGACTGCTCATAAAAGAC+TGG - tig0023956:40888-40907 None:intergenic 40.0%
TGAGTGTTCTTCAGTGCTAA+TGG - tig0023956:40960-40979 None:intergenic 40.0%
TGACCTGCATATTAATCCTC+AGG - tig0023956:41089-41108 None:intergenic 40.0%
AGTGATGATATTGTCTCACG+TGG - tig0023956:41223-41242 None:intergenic 40.0%
CGTGAGACAATATCATCACT+TGG + tig0023956:41223-41242 Msa1412780:intron 40.0%
! AGTGCTTAACAGAGCACTTT+AGG + tig0023956:41255-41274 Msa1412780:intron 40.0%
GAGACTCCAATTCCATGAAA+TGG - tig0023956:41341-41360 None:intergenic 40.0%
ACACTTCATGCTGAGTATGT+TGG + tig0023956:41455-41474 Msa1412780:intron 40.0%
AAACAAATGCTGTGGCATAC+AGG + tig0023956:41492-41511 Msa1412780:intron 40.0%
! CAGTCTAAAATGGCCACTTA+CGG - tig0023956:41687-41706 None:intergenic 40.0%
TTAAGAGGACATTGCCCTAT+TGG + tig0023956:41717-41736 Msa1412780:intron 40.0%
GAAATTCTAGCCATGCCAAT+AGG - tig0023956:41735-41754 None:intergenic 40.0%
TATTTAGAGAGCAGAGGAGA+TGG + tig0023956:41787-41806 Msa1412780:intron 40.0%
! CTGTGGAGTATTTGAGCTAT+AGG + tig0023956:41902-41921 Msa1412780:intron 40.0%
AAGACCTTAGACTGAAACCT+AGG - tig0023956:41998-42017 None:intergenic 40.0%
! ATGCTGCTTGTGTAGACTTT+GGG + tig0023956:42407-42426 Msa1412780:intron 40.0%
TTTACAGGCGATTCATCTTC+TGG - tig0023956:42725-42744 None:intergenic 40.0%
CGTATGGTTACACTCTTTAC+AGG - tig0023956:42740-42759 None:intergenic 40.0%
! TAAAGAGTGTAACCATACGC+AGG + tig0023956:42741-42760 Msa1412780:CDS 40.0%
ATCGCATTGTCGTACAACAA+CGG - tig0023956:42967-42986 None:intergenic 40.0%
TTCAAGACTTTCTCTTGGAG+AGG - tig0023956:43189-43208 None:intergenic 40.0%
TGGGTTTCAAGACTTTCTCT+TGG - tig0023956:43194-43213 None:intergenic 40.0%
!!! CCACTTTTGGATTGGTATCT+TGG - tig0023956:43214-43233 None:intergenic 40.0%
CCAAGATACCAATCCAAAAG+TGG + tig0023956:43211-43230 Msa1412780:CDS 40.0%
TCTTCAGGGATATTTGGAAG+GGG - tig0023956:43333-43352 None:intergenic 40.0%
CTTCTTCAGGGATATTTGGA+AGG - tig0023956:43335-43354 None:intergenic 40.0%
CAACAGCTTCTTCTTCTTCA+GGG - tig0023956:43347-43366 None:intergenic 40.0%
CAAGATTTCAAGAGTGGATG+AGG - tig0023956:43435-43454 None:intergenic 40.0%
CTCATCCACTCTTGAAATCT+TGG + tig0023956:43433-43452 Msa1412780:intron 40.0%
!! CACGTCTATTTTTCTGTAGG+AGG + tig0023956:43492-43511 Msa1412780:intron 40.0%
! AGCTGCTGTTTAGATATCTG+AGG + tig0023956:43641-43660 Msa1412780:three_prime_UTR 40.0%
! CACCTCAGGTATCTTTTTGA+AGG - tig0023956:43671-43690 None:intergenic 40.0%
TGATGTTCTAATCACACCTC+AGG - tig0023956:43685-43704 None:intergenic 40.0%
ACGAAATGTTCTCGCGAAAT+AGG - tig0023956:43876-43895 None:intergenic 40.0%
! GTGATGGAACTCATCTGAAG+CGG + tig0023956:38775-38794 Msa1412780:five_prime_UTR 45.0%
! GAGAGAGAAAGTGTGAATGG+CGG + tig0023956:38807-38826 Msa1412780:exon 45.0%
GGAATACACATGCTGCGAAT+CGG + tig0023956:38831-38850 Msa1412780:CDS 45.0%
TTAATGTCCGGACTCACCTT+AGG + tig0023956:38904-38923 Msa1412780:CDS 45.0%
ACTGAGAGACATGAGACCTA+AGG - tig0023956:38923-38942 None:intergenic 45.0%
AAGAGGTAGTAGTACCTCCA+TGG - tig0023956:39249-39268 None:intergenic 45.0%
! TCTCGATATGGTTTGGCCAT+TGG + tig0023956:40106-40125 Msa1412780:CDS 45.0%
! GTGTTTTCAACTCGGCTCTA+CGG - tig0023956:40363-40382 None:intergenic 45.0%
GTATTAGGCTGGAAAAGGTG+GGG + tig0023956:40606-40625 Msa1412780:intron 45.0%
AGTTGAGTCCAAGCTGTATG+TGG - tig0023956:41014-41033 None:intergenic 45.0%
GTGGCAACTTTCTTATCCTG+AGG + tig0023956:41070-41089 Msa1412780:intron 45.0%
! GCGAGAGTCTGATAGTTTTC+AGG - tig0023956:41144-41163 None:intergenic 45.0%
GATGATATTGTCTCACGTGG+AGG - tig0023956:41220-41239 None:intergenic 45.0%
CAGAGTTCAGACCTGTTCTT+TGG - tig0023956:41764-41783 None:intergenic 45.0%
CAGCTCATCACACATAGAGA+TGG - tig0023956:41973-41992 None:intergenic 45.0%
CATCTCTATGTGTGATGAGC+TGG + tig0023956:41971-41990 Msa1412780:intron 45.0%
TGGTCCTAGGTTTCAGTCTA+AGG + tig0023956:41991-42010 Msa1412780:intron 45.0%
TTATGTCATTCCTGGGGAGA+TGG + tig0023956:42025-42044 Msa1412780:intron 45.0%
!!! TGTTTTAACTGCCTCCTGCA+TGG + tig0023956:42061-42080 Msa1412780:intron 45.0%
! GATGCTGCTTGTGTAGACTT+TGG + tig0023956:42406-42425 Msa1412780:intron 45.0%
GCTTGTGTAGACTTTGGGTA+TGG + tig0023956:42412-42431 Msa1412780:intron 45.0%
TAACCATACGCAGGATTCCA+AGG + tig0023956:42750-42769 Msa1412780:CDS 45.0%
ATACCTTGGAATCCTGCGTA+TGG - tig0023956:42756-42775 None:intergenic 45.0%
!! AACTTGTTACGGCAAGTGTG+AGG - tig0023956:42809-42828 None:intergenic 45.0%
TCATACAGCGGCATACTTTC+TGG - tig0023956:42906-42925 None:intergenic 45.0%
AGATTCTGTGAGAGAGGTGA+AGG + tig0023956:43143-43162 Msa1412780:intron 45.0%
GAGGTGAAGGTGGATATTGA+TGG + tig0023956:43156-43175 Msa1412780:CDS 45.0%
ACAAGTCGAATAGGGGTTCT+CGG + tig0023956:43253-43272 Msa1412780:CDS 45.0%
CCAACAGCTTCTTCTTCTTC+AGG - tig0023956:43348-43367 None:intergenic 45.0%
CCTGAAGAAGAAGAAGCTGT+TGG + tig0023956:43345-43364 Msa1412780:CDS 45.0%
GAGTTTAGTGGCGTGTGTTG+TGG - tig0023956:38675-38694 None:intergenic 50.0%
! AGAGAAAGTGTGAATGGCGG+TGG + tig0023956:38810-38829 Msa1412780:exon 50.0%
! ATCTTCTTGGTGGTCTTCGC+CGG + tig0023956:38880-38899 Msa1412780:CDS 50.0%
!! GTCTTCGCCGGTTTAATGTC+CGG + tig0023956:38892-38911 Msa1412780:CDS 50.0%
GGTGAGTCCGGACATTAAAC+CGG - tig0023956:38902-38921 None:intergenic 50.0%
CATGAGACCTAAGGTGAGTC+CGG - tig0023956:38914-38933 None:intergenic 50.0%
AGGTAGTAGTACCTCCATGG+CGG - tig0023956:39246-39265 None:intergenic 50.0%
GTGTGTTAGAGCCCTTTGTC+AGG - tig0023956:40049-40068 None:intergenic 50.0%
AGGAGTGACTGATGCACCAA+TGG - tig0023956:40125-40144 None:intergenic 50.0%
CATACAAGCACGCGGACAAA+AGG - tig0023956:40145-40164 None:intergenic 50.0%
! CTTTTGTCCGCGTGCTTGTA+TGG + tig0023956:40143-40162 Msa1412780:CDS 50.0%
CAACTCGGCTCTACGGAAAA+GGG - tig0023956:40356-40375 None:intergenic 50.0%
TCAACTCGGCTCTACGGAAA+AGG - tig0023956:40357-40376 None:intergenic 50.0%
TCAGTTCCCTGCTCGGTAAT+AGG - tig0023956:40830-40849 None:intergenic 50.0%
TCAGTCATCAGTTCCCTGCT+CGG - tig0023956:40837-40856 None:intergenic 50.0%
TATAGGGTCAGTAGTGCCCA+AGG - tig0023956:41600-41619 None:intergenic 50.0%
AGGACATTGCCCTATTGGCA+TGG + tig0023956:41722-41741 Msa1412780:intron 50.0%
ATGTGTGATGAGCTGGTCCT+AGG + tig0023956:41978-41997 Msa1412780:intron 50.0%
TTTGCTTCAACCATCTCCCC+AGG - tig0023956:42038-42057 None:intergenic 50.0%
TTTAACTGCCTCCTGCATGG+TGG + tig0023956:42064-42083 Msa1412780:intron 50.0%
! TCAGAAGGGGCATAGTCACA+TGG + tig0023956:42941-42960 Msa1412780:CDS 50.0%
TTCTGTGAGAGAGGTGAAGG+TGG + tig0023956:43146-43165 Msa1412780:CDS 50.0%
TGAGGCATGCCAGCAAATCA+TGG + tig0023956:43800-43819 Msa1412780:three_prime_UTR 50.0%
GTGGCGTGTGTTGTGGTAGA+TGG - tig0023956:38668-38687 None:intergenic 55.0%
CCTCACGATCGTAAACACGC+CGG + tig0023956:38979-38998 Msa1412780:CDS 55.0%
TAGTAGTACCTCCATGGCGG+CGG - tig0023956:39243-39262 None:intergenic 55.0%
CTCACTGAGTTCAAGTGCCC+CGG - tig0023956:40662-40681 None:intergenic 55.0%
!! TTCGTAGTGGACCACCATGC+AGG - tig0023956:42078-42097 None:intergenic 55.0%
GAGGTGAGTAGAAGTCCCAC+AGG - tig0023956:42790-42809 None:intergenic 55.0%
GGGGTTCTCGGAGCAGAAAA+TGG + tig0023956:43265-43284 Msa1412780:CDS 55.0%
CCGGCGTGTTTACGATCGTG+AGG - tig0023956:38982-39001 None:intergenic 60.0%
CATTTGCAATGCCGCCGCCA+TGG + tig0023956:39229-39248 Msa1412780:CDS 60.0%
!! GTAGTGGACCACCATGCAGG+AGG - tig0023956:42075-42094 None:intergenic 60.0%
TTGCAATGCCGCCGCCATGG+AGG + tig0023956:39232-39251 Msa1412780:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0023956 gene 38622 43957 38622 ID=Msa1412780;Name=Msa1412780
tig0023956 mRNA 38622 43957 38622 ID=Msa1412780-mRNA-1;Parent=Msa1412780;Name=Msa1412780-mRNA-1;_AED=0.23;_eAED=0.23;_QI=174|1|1|1|0.90|0.83|12|402|424
tig0023956 exon 38622 38728 38622 ID=Msa1412780-mRNA-1:exon:20811;Parent=Msa1412780-mRNA-1
tig0023956 exon 38756 39000 38756 ID=Msa1412780-mRNA-1:exon:20812;Parent=Msa1412780-mRNA-1
tig0023956 exon 39177 39253 39177 ID=Msa1412780-mRNA-1:exon:20813;Parent=Msa1412780-mRNA-1
tig0023956 exon 39734 39817 39734 ID=Msa1412780-mRNA-1:exon:20814;Parent=Msa1412780-mRNA-1
tig0023956 exon 40085 40198 40085 ID=Msa1412780-mRNA-1:exon:20815;Parent=Msa1412780-mRNA-1
tig0023956 exon 40319 40405 40319 ID=Msa1412780-mRNA-1:exon:20816;Parent=Msa1412780-mRNA-1
tig0023956 exon 40613 40752 40613 ID=Msa1412780-mRNA-1:exon:20817;Parent=Msa1412780-mRNA-1
tig0023956 exon 40842 40929 40842 ID=Msa1412780-mRNA-1:exon:20818;Parent=Msa1412780-mRNA-1
tig0023956 exon 42698 42771 42698 ID=Msa1412780-mRNA-1:exon:20819;Parent=Msa1412780-mRNA-1
tig0023956 exon 42899 43023 42899 ID=Msa1412780-mRNA-1:exon:20820;Parent=Msa1412780-mRNA-1
tig0023956 exon 43145 43407 43145 ID=Msa1412780-mRNA-1:exon:20821;Parent=Msa1412780-mRNA-1
tig0023956 exon 43511 43957 43511 ID=Msa1412780-mRNA-1:exon:20822;Parent=Msa1412780-mRNA-1
tig0023956 five_prime_UTR 38622 38728 38622 ID=Msa1412780-mRNA-1:five_prime_utr;Parent=Msa1412780-mRNA-1
tig0023956 five_prime_UTR 38756 38822 38756 ID=Msa1412780-mRNA-1:five_prime_utr;Parent=Msa1412780-mRNA-1
tig0023956 CDS 38823 39000 38823 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 39177 39253 39177 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 39734 39817 39734 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 40085 40198 40085 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 40319 40405 40319 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 40613 40752 40613 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 40842 40929 40842 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 42698 42771 42698 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 42899 43023 42899 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 43145 43407 43145 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 CDS 43511 43555 43511 ID=Msa1412780-mRNA-1:cds;Parent=Msa1412780-mRNA-1
tig0023956 three_prime_UTR 43556 43957 43556 ID=Msa1412780-mRNA-1:three_prime_utr;Parent=Msa1412780-mRNA-1
Gene Sequence

>Msa1412780

ATGGCGGTGGAATACACATGCTGCGAATCGGAGTTCTTCATCCACATATTGGTTATCATCTTCTTGGTGGTCTTCGCCGGTTTAATGTCCGGACTCACCTTAGGTCTCATGTCTCTCAGTCTCGTTGATCTTGAAGTTCTTGCTAAGTCTGGTACTCCTCACGATCGTAAACACGCCGTGAAGATATTACCTGTTGTGAGAAATCAGCATTTATTGCTTTGTACTTTGCTCATTTGCAATGCCGCCGCCATGGAGGCACTTCCTATTTTTCTTGATAGTCTTGTTACTGCTTGGGGTGCTATCCTGATTTCAGTCACGTTGATTCTTCTCTTTGGTGAGATTATACCCCAATCAGTTTGTTCTCGATATGGTTTGGCCATTGGTGCATCAGTCACTCCTTTTGTCCGCGTGCTTGTATGGATATGTTATCCAGTTGCTTTTCCAATTAGCAAGTTGTTAGACTATTTGCTGGGTCATCGACATGAAGCCCTTTTCCGTAGAGCCGAGTTGAAAACACTAGTAGATTTGCATGGTAATGAGGCTGGAAAAGGTGGGGAACTGACACATGATGAAACAACAATAATTGCCGGGGCACTTGAACTCAGTGAGAAGACAGCCAGTGATGCTATGACTCCTATATCTGAAACATTTGCTATTGATATTAATTCGAAGCTTGATAGGGAACTGATGACTGAAATATTGGAGAAAGGACATAGCAGAGTCCCAGTCTTTTATGAGCAGTCTACTAACATTATTGGATTAATACTGATCAAGAACTTGTTGACTATTCATCCAGAAGATGAATCGCCTGTAAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCGCTGTATGACATTTTGAATGAGTTTCAGAAGGGGCATAGTCACATGGCCGTTGTTGTACGACAATGCGATAAAACCAAGCAACCATCTTCCAAAAATGATTCAAATGATTCTGTGAGAGAGGTGAAGGTGGATATTGATGGTGAAAAGCCTCTCCAAGAGAAAGTCTTGAAACCCAAGATACCAATCCAAAAGTGGAAAAGCTTTCCAAATACGAACAAGTCGAATAGGGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCAGATATTTTAGAGATAGATGGTAGTCCCCTTCCAAATATCCCTGAAGAAGAAGAAGCTGTTGGAATAATTACAATGGAGGATGTTATTGAAGAGCTTTTACAGGAGGAGATATTTGATGAGACAGATCATCATTTTGAAGACTCATGA

Protein sequence

>Msa1412780

MAVEYTCCESEFFIHILVIIFLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPHDRKHAVKILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVTPFVRVLVWICYPVAFPISKLLDYLLGHRHEALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMTEILEKGHSRVPVFYEQSTNIIGLILIKNLLTIHPEDESPVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRQCDKTKQPSSKNDSNDSVREVKVDIDGEKPLQEKVLKPKIPIQKWKSFPNTNKSNRGSRSRKWSKNMYSDILEIDGSPLPNIPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS*