Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381890 | XP_003608320.1 | 98.824 | 425 | 4 | 1 | 1 | 424 | 1 | 425 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381890 | sp|Q9ZQR4|Y2452_ARATH | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381890 | G7JTY3 | 98.824 | 425 | 4 | 1 | 1 | 424 | 1 | 425 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1381890 | Msa1412780 | 0.970478 | 1.116924e-131 | -8.615850e-47 |
| Msa0654590 | Msa1381890 | 0.985808 | 9.841261e-165 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381890 | MtrunA17_Chr4g0049251 | 98.824 | 425 | 4 | 1 | 1 | 424 | 1 | 425 | 0.0 | 854 |
| Msa1381890 | MtrunA17_Chr2g0280251 | 81.163 | 430 | 74 | 3 | 1 | 424 | 1 | 429 | 0.0 | 676 |
| Msa1381890 | MtrunA17_Chr3g0141551 | 56.206 | 427 | 180 | 4 | 1 | 420 | 1 | 427 | 6.58e-165 | 473 |
| Msa1381890 | MtrunA17_Chr4g0065751 | 55.687 | 422 | 158 | 6 | 12 | 422 | 35 | 438 | 3.36e-156 | 450 |
| Msa1381890 | MtrunA17_Chr6g0467811 | 55.556 | 405 | 151 | 6 | 21 | 422 | 40 | 418 | 4.11e-149 | 431 |
| Msa1381890 | MtrunA17_Chr6g0469911 | 48.585 | 424 | 197 | 4 | 7 | 422 | 29 | 439 | 2.80e-136 | 399 |
| Msa1381890 | MtrunA17_Chr7g0259621 | 52.058 | 413 | 187 | 6 | 12 | 418 | 35 | 442 | 9.82e-136 | 397 |
| Msa1381890 | MtrunA17_Chr6g0469771 | 55.036 | 278 | 125 | 0 | 4 | 281 | 5 | 282 | 1.39e-111 | 329 |
| Msa1381890 | MtrunA17_Chr7g0217521 | 54.789 | 261 | 117 | 1 | 21 | 281 | 44 | 303 | 2.94e-96 | 291 |
| Msa1381890 | MtrunA17_Chr7g0217531 | 40.411 | 146 | 64 | 5 | 279 | 418 | 4 | 132 | 1.97e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381890 | AT2G14520.4 | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Msa1381890 | AT2G14520.1 | 78.960 | 423 | 88 | 1 | 1 | 423 | 1 | 422 | 0.0 | 683 |
| Msa1381890 | AT2G14520.2 | 78.960 | 423 | 82 | 3 | 1 | 423 | 1 | 416 | 0.0 | 673 |
| Msa1381890 | AT4G33700.1 | 78.454 | 427 | 86 | 3 | 1 | 424 | 1 | 424 | 0.0 | 672 |
| Msa1381890 | AT2G14520.3 | 77.353 | 340 | 76 | 1 | 84 | 423 | 1 | 339 | 0.0 | 536 |
| Msa1381890 | AT4G33700.3 | 77.035 | 344 | 73 | 3 | 84 | 424 | 1 | 341 | 0.0 | 530 |
| Msa1381890 | AT4G33700.2 | 84.342 | 281 | 44 | 0 | 1 | 281 | 1 | 281 | 1.64e-172 | 484 |
| Msa1381890 | AT1G47330.1 | 53.968 | 441 | 180 | 4 | 1 | 420 | 1 | 439 | 2.90e-162 | 467 |
| Msa1381890 | AT5G52790.4 | 55.319 | 423 | 154 | 4 | 2 | 422 | 3 | 392 | 1.03e-158 | 454 |
| Msa1381890 | AT5G52790.1 | 55.319 | 423 | 154 | 4 | 2 | 422 | 3 | 392 | 1.12e-157 | 455 |
| Msa1381890 | AT5G52790.3 | 54.988 | 411 | 150 | 4 | 2 | 410 | 3 | 380 | 3.35e-152 | 437 |
| Msa1381890 | AT5G52790.2 | 54.988 | 411 | 150 | 4 | 2 | 410 | 3 | 380 | 3.35e-152 | 437 |
| Msa1381890 | AT5G52790.5 | 54.722 | 413 | 152 | 4 | 2 | 412 | 3 | 382 | 1.74e-151 | 437 |
| Msa1381890 | AT4G14240.1 | 54.306 | 418 | 165 | 6 | 11 | 422 | 34 | 431 | 7.51e-145 | 422 |
| Msa1381890 | AT4G14230.1 | 51.816 | 413 | 185 | 5 | 11 | 422 | 33 | 432 | 2.20e-141 | 413 |
| Msa1381890 | AT1G03270.1 | 53.081 | 422 | 170 | 7 | 12 | 422 | 33 | 437 | 1.14e-139 | 409 |
| Msa1381890 | AT4G14240.2 | 53.110 | 418 | 161 | 7 | 11 | 422 | 34 | 422 | 1.21e-136 | 400 |
| Msa1381890 | AT1G47330.2 | 50.975 | 359 | 153 | 3 | 83 | 420 | 2 | 358 | 1.40e-120 | 358 |
| Msa1381890 | AT4G14240.3 | 53.179 | 346 | 136 | 6 | 83 | 422 | 2 | 327 | 1.21e-111 | 333 |
| Msa1381890 | AT3G13070.1 | 27.559 | 254 | 156 | 9 | 72 | 312 | 226 | 464 | 1.16e-13 | 73.6 |
| Msa1381890 | AT1G55930.1 | 27.843 | 255 | 154 | 10 | 72 | 312 | 221 | 459 | 1.28e-13 | 73.2 |
| Msa1381890 | AT1G55930.2 | 28.063 | 253 | 152 | 10 | 74 | 312 | 223 | 459 | 1.73e-13 | 72.8 |
Find 126 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACATCAGTAATGAAATTT+AGG | 0.132855 | tig0020460:-24635 | Msa1381890:three_prime_UTR |
| CTATTCGACTTGTTCGTATT+TGG | 0.137170 | tig0020460:+25089 | None:intergenic |
| GAGCAGTCTACTAACATTAT+TGG | 0.167034 | tig0020460:-27435 | Msa1381890:CDS |
| TCTTCTTCTTCAGGGATATT+TGG | 0.182695 | tig0020460:+24996 | None:intergenic |
| CCCAATCGATAACCATAATT+TGG | 0.187594 | tig0020460:-29768 | Msa1381890:five_prime_UTR |
| ACGAAATGTTCTCGCGAAAT+AGG | 0.201542 | tig0020460:+24459 | None:intergenic |
| ATAATTAGATAATGCGGTTT+AGG | 0.230773 | tig0020460:-24719 | Msa1381890:three_prime_UTR |
| GGTACACTAATGTGTCTTTA+AGG | 0.244640 | tig0020460:-24558 | Msa1381890:three_prime_UTR |
| CCAACAGCTTCTTCTTCTTC+AGG | 0.246006 | tig0020460:+24987 | None:intergenic |
| CATATTGGTTATCATCTTCT+TGG | 0.246562 | tig0020460:-29466 | Msa1381890:CDS |
| TCATACAGCGGCATACTTTC+TGG | 0.250177 | tig0020460:+25429 | None:intergenic |
| CAATCAGTTTGTTCTCGATA+TGG | 0.266595 | tig0020460:-28238 | Msa1381890:CDS |
| GATAACCATAATTTGGCTTT+TGG | 0.270329 | tig0020460:-29761 | Msa1381890:five_prime_UTR |
| GTCACGTTGATTCTTCTCTT+TGG | 0.274630 | tig0020460:-28541 | Msa1381890:CDS |
| CGTATGGTTACACTCTTTAC+AGG | 0.295718 | tig0020460:+25595 | None:intergenic |
| TAATTAGATAATGCGGTTTA+GGG | 0.299088 | tig0020460:-24718 | Msa1381890:three_prime_UTR |
| ATGTATGTCACCTTGCTAAT+TGG | 0.301980 | tig0020460:+28145 | None:intergenic |
| TTTACAGGCGATTCATCTTC+TGG | 0.305252 | tig0020460:+25610 | None:intergenic |
| ATAGTTGATACCTACTTGTT+TGG | 0.306426 | tig0020460:-24490 | Msa1381890:three_prime_UTR |
| GTGGCGTGTGTTGTGGTAGA+TGG | 0.308908 | tig0020460:+29658 | None:intergenic |
| CCAGTTGTTAGACTATTTGC+TGG | 0.312154 | tig0020460:-28017 | Msa1381890:intron |
| TGATAGTCTTGTTACTGCTT+GGG | 0.319831 | tig0020460:-28581 | Msa1381890:CDS |
| CCAAATTATGGTTATCGATT+GGG | 0.330846 | tig0020460:+29768 | None:intergenic |
| GAAAAGTAGTTAGAGTTTAG+TGG | 0.336161 | tig0020460:+29639 | None:intergenic |
| AATAACCAAAAGCCAAATTA+TGG | 0.339330 | tig0020460:+29756 | None:intergenic |
| GGAACTGATGACTGAAATAT+TGG | 0.341934 | tig0020460:-27490 | Msa1381890:CDS |
| GTTATTGTCTTGATTACATT+AGG | 0.342850 | tig0020460:-29739 | Msa1381890:five_prime_UTR |
| TTGATAGTCTTGTTACTGCT+TGG | 0.343981 | tig0020460:-28582 | Msa1381890:CDS |
| AACATCAGTAATGAAATTTA+GGG | 0.345408 | tig0020460:-24634 | Msa1381890:three_prime_UTR |
| CAAATACGAACAAGTCGAAT+AGG | 0.348065 | tig0020460:-25088 | Msa1381890:CDS |
| TAACATTATTGGATTAATAC+TGG | 0.362806 | tig0020460:-27424 | Msa1381890:intron |
| GGAGTTCTTCATCCACATAT+TGG | 0.363983 | tig0020460:-29481 | Msa1381890:CDS |
| ATAGCAAATGTTTCAGATAT+AGG | 0.364291 | tig0020460:+27626 | None:intergenic |
| AAATACGAACAAGTCGAATA+GGG | 0.365943 | tig0020460:-25087 | Msa1381890:CDS |
| TCAACTCGGCTCTACGGAAA+AGG | 0.383543 | tig0020460:+27978 | None:intergenic |
| TCATTTGTTTCTTATTTAAG+AGG | 0.388434 | tig0020460:+29586 | None:intergenic |
| CTTGAAGTTCTTGCTAAGTC+TGG | 0.388705 | tig0020460:-29381 | Msa1381890:CDS |
| TTGCTAATTGGAAAAGCAAC+TGG | 0.400425 | tig0020460:+28157 | None:intergenic |
| ATCTTCTTGGTGGTCTTCGC+CGG | 0.401529 | tig0020460:-29453 | Msa1381890:CDS |
| GATGAAACAACAATAATTGC+CGG | 0.410016 | tig0020460:-27692 | Msa1381890:CDS |
| GCCAAATTATGGTTATCGAT+TGG | 0.410040 | tig0020460:+29767 | None:intergenic |
| CAACAGCTTCTTCTTCTTCA+GGG | 0.421642 | tig0020460:+24988 | None:intergenic |
| TGGGTTTCAAGACTTTCTCT+TGG | 0.427213 | tig0020460:+25141 | None:intergenic |
| CATTTGCAATGCCGCCGCCA+TGG | 0.428491 | tig0020460:-29103 | Msa1381890:CDS |
| TTCTGTGAGAGAGGTGAAGG+TGG | 0.428661 | tig0020460:-25186 | Msa1381890:CDS |
| ATATTAATTCGAAGCTTGAT+AGG | 0.428680 | tig0020460:-27601 | Msa1381890:intron |
| ATATCGAGAACAAACTGATT+GGG | 0.432835 | tig0020460:+28240 | None:intergenic |
| TTAATGTCCGGACTCACCTT+AGG | 0.436067 | tig0020460:-29429 | Msa1381890:CDS |
| AGAGAAAGTGTGAATGGCGG+TGG | 0.439640 | tig0020460:-29523 | Msa1381890:exon |
| GAATCAACGTGACTGAAATC+AGG | 0.439998 | tig0020460:+28551 | None:intergenic |
| AGTTTGTTCTCGATATGGTT+TGG | 0.445684 | tig0020460:-28233 | Msa1381890:CDS |
| ATTGGTTATCATCTTCTTGG+TGG | 0.446975 | tig0020460:-29463 | Msa1381890:CDS |
| TCTCGATATGGTTTGGCCAT+TGG | 0.452760 | tig0020460:-28226 | Msa1381890:CDS |
| CATATCGAGAACAAACTGAT+TGG | 0.460455 | tig0020460:+28239 | None:intergenic |
| GGTGAGTCCGGACATTAAAC+CGG | 0.461990 | tig0020460:+29434 | None:intergenic |
| CAACTCGGCTCTACGGAAAA+GGG | 0.462073 | tig0020460:+27979 | None:intergenic |
| AAATGCTGATTTCTCACAAC+AGG | 0.462976 | tig0020460:+29144 | None:intergenic |
| GTCTTCGCCGGTTTAATGTC+CGG | 0.465784 | tig0020460:-29441 | Msa1381890:CDS |
| CATACAAGCACGCGGACAAA+AGG | 0.470475 | tig0020460:+28190 | None:intergenic |
| TTGTATTAGGCTGGAAAAGG+TGG | 0.472607 | tig0020460:-27728 | Msa1381890:intron |
| AGATTCTGTGAGAGAGGTGA+AGG | 0.479457 | tig0020460:-25189 | Msa1381890:CDS |
| GTGCGTGAGAGAAAGAAGGA+AGG | 0.481663 | tig0020460:-29800 | None:intergenic |
| TTCAAGACTTTCTCTTGGAG+AGG | 0.484352 | tig0020460:+25146 | None:intergenic |
| GGGGTTCTCGGAGCAGAAAA+TGG | 0.486966 | tig0020460:-25067 | Msa1381890:CDS |
| CTTCTTCAGGGATATTTGGA+AGG | 0.495785 | tig0020460:+25000 | None:intergenic |
| ACAAGTCGAATAGGGGTTCT+CGG | 0.497243 | tig0020460:-25079 | Msa1381890:CDS |
| CAGTTGTTAGACTATTTGCT+GGG | 0.503149 | tig0020460:-28016 | Msa1381890:CDS |
| GGAATACACATGCTGCGAAT+CGG | 0.507074 | tig0020460:-29502 | Msa1381890:CDS |
| GAATTGTATTAGGCTGGAAA+AGG | 0.507317 | tig0020460:-27731 | Msa1381890:intron |
| CCAAGATACCAATCCAAAAG+TGG | 0.512266 | tig0020460:-25121 | Msa1381890:CDS |
| GTAGACTGCTCATAAAAGAC+TGG | 0.512510 | tig0020460:+27447 | None:intergenic |
| ATGAAACAACAATAATTGCC+GGG | 0.518788 | tig0020460:-27691 | Msa1381890:CDS |
| TGTATTAGGCTGGAAAAGGT+GGG | 0.520587 | tig0020460:-27727 | Msa1381890:intron |
| TTCTTCAGGGATATTTGGAA+GGG | 0.520911 | tig0020460:+25001 | None:intergenic |
| TGCGTGAGAGAAAGAAGGAA+GGG | 0.522539 | tig0020460:-29799 | None:intergenic |
| CAAATTATGGTTATCGATTG+GGG | 0.525889 | tig0020460:+29769 | None:intergenic |
| CATGAGACCTAAGGTGAGTC+CGG | 0.527621 | tig0020460:+29422 | None:intergenic |
| GATAGTCTTGTTACTGCTTG+GGG | 0.531398 | tig0020460:-28580 | Msa1381890:CDS |
| TAAAATAGATTCTGTGAGAG+AGG | 0.536381 | tig0020460:-25195 | Msa1381890:intron |
| CCTGAAGAAGAAGAAGCTGT+TGG | 0.542971 | tig0020460:-24987 | Msa1381890:CDS |
| AGTAGATTTGCATGGTAATG+AGG | 0.545332 | tig0020460:-27948 | Msa1381890:intron |
| ATGACTGAAATATTGGAGAA+AGG | 0.546165 | tig0020460:-27483 | Msa1381890:CDS |
| AGAAGATGATAACCAATATG+TGG | 0.546494 | tig0020460:+29469 | None:intergenic |
| TGAGGCATGCCAGCAAATCA+TGG | 0.553917 | tig0020460:-24532 | Msa1381890:three_prime_UTR |
| GAGGTGAAGGTGGATATTGA+TGG | 0.556091 | tig0020460:-25176 | Msa1381890:CDS |
| TATAGGAGTCATAGCATCAC+TGG | 0.563065 | tig0020460:+27643 | None:intergenic |
| AGGAGTGACTGATGCACCAA+TGG | 0.564195 | tig0020460:+28210 | None:intergenic |
| GGAATGTAATCCAAACAAGT+AGG | 0.566031 | tig0020460:+24480 | None:intergenic |
| GAAACAAATGAAGTCGGTGA+TGG | 0.567511 | tig0020460:-29574 | Msa1381890:five_prime_UTR |
| GAAGAGAGAGAAAGTGTGAA+TGG | 0.568383 | tig0020460:-29529 | Msa1381890:exon |
| GTTGATTCTTCTCTTTGGTG+AGG | 0.574660 | tig0020460:-28536 | Msa1381890:intron |
| TAACCATACGCAGGATTCCA+AGG | 0.576381 | tig0020460:-25582 | Msa1381890:intron |
| TAGTAGTACCTCCATGGCGG+CGG | 0.577933 | tig0020460:+29092 | None:intergenic |
| CTCACTGAGTTCAAGTGCCC+CGG | 0.578508 | tig0020460:+27673 | None:intergenic |
| GAGTTTAGTGGCGTGTGTTG+TGG | 0.578971 | tig0020460:+29651 | None:intergenic |
| TCTTCAGGGATATTTGGAAG+GGG | 0.580165 | tig0020460:+25002 | None:intergenic |
| GAAAGTGCGTGAGAGAAAGA+AGG | 0.580173 | tig0020460:-29804 | None:intergenic |
| TGATGTTCTAATCACACCTC+AGG | 0.580514 | tig0020460:+24650 | None:intergenic |
| ATACCTTGGAATCCTGCGTA+TGG | 0.590163 | tig0020460:+25579 | None:intergenic |
| GAGAGAAAGAAGGAAGGGAA+AGG | 0.609337 | tig0020460:-29794 | None:intergenic |
| ACTGAGAGACATGAGACCTA+AGG | 0.612493 | tig0020460:+29413 | None:intergenic |
| AATACGAACAAGTCGAATAG+GGG | 0.612720 | tig0020460:-25086 | Msa1381890:CDS |
| AAAACACTAGTAGATTTGCA+TGG | 0.612993 | tig0020460:-27956 | Msa1381890:CDS |
| AAATAAGAAACAAATGAAGT+CGG | 0.619536 | tig0020460:-29580 | Msa1381890:five_prime_UTR |
| ACATTTCGTGAATTTGACCA+AGG | 0.620717 | tig0020460:-24445 | Msa1381890:three_prime_UTR |
| AAGAGGTAGTAGTACCTCCA+TGG | 0.621063 | tig0020460:+29086 | None:intergenic |
| CAATAGATAATTAGATAATG+CGG | 0.621446 | tig0020460:-24725 | Msa1381890:three_prime_UTR |
| AGCTGTTGGAATAATTACAA+TGG | 0.624823 | tig0020460:-24973 | Msa1381890:CDS |
| ATCGCATTGTCGTACAACAA+CGG | 0.629829 | tig0020460:+25368 | None:intergenic |
| TGTTGGAATAATTACAATGG+AGG | 0.632047 | tig0020460:-24970 | Msa1381890:CDS |
| TATCGAGAACAAACTGATTG+GGG | 0.632512 | tig0020460:+28241 | None:intergenic |
| TAGACTGCTCATAAAAGACT+GGG | 0.648315 | tig0020460:+27448 | None:intergenic |
| GTATTAGGCTGGAAAAGGTG+GGG | 0.650287 | tig0020460:-27726 | Msa1381890:intron |
| TCAGAAGGGGCATAGTCACA+TGG | 0.652219 | tig0020460:-25391 | Msa1381890:CDS |
| GTGATGGAACTCATCTGAAG+CGG | 0.654741 | tig0020460:-29558 | Msa1381890:five_prime_UTR |
| CCGGCGTGTTTACGATCGTG+AGG | 0.657033 | tig0020460:+29354 | None:intergenic |
| AATGTGTCTTTAAGGCAATG+AGG | 0.660021 | tig0020460:-24550 | Msa1381890:three_prime_UTR |
| TAAAGAGTGTAACCATACGC+AGG | 0.665814 | tig0020460:-25591 | Msa1381890:CDS |
| TTGCAATGCCGCCGCCATGG+AGG | 0.672226 | tig0020460:-29100 | Msa1381890:intron |
| AGCTGCTGTTTAGATATCTG+AGG | 0.672963 | tig0020460:-24691 | Msa1381890:three_prime_UTR |
| TGAAACAACAATAATTGCCG+GGG | 0.673538 | tig0020460:-27690 | Msa1381890:CDS |
| GAGAGAGAAAGTGTGAATGG+CGG | 0.680617 | tig0020460:-29526 | Msa1381890:exon |
| TCATTCAAAATGTCATACAG+CGG | 0.722071 | tig0020460:+25417 | None:intergenic |
| AACATATCCATACAAGCACG+CGG | 0.727396 | tig0020460:+28182 | None:intergenic |
| AGGTAGTAGTACCTCCATGG+CGG | 0.742514 | tig0020460:+29089 | None:intergenic |
| CCTCACGATCGTAAACACGC+CGG | 0.756533 | tig0020460:-29354 | Msa1381890:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCCAATAAATAAAAT+TGG | + | tig0020460:24928-24947 | None:intergenic | 10.0% |
| !!! | TGAATTTTTATTAAAAAAGA+AGG | + | tig0020460:26910-26929 | None:intergenic | 10.0% |
| !!! | TTTTTAATAAAAATTCAATG+TGG | - | tig0020460:26913-26932 | Msa1381890:intron | 10.0% |
| !!! | TTATGCATTTATTATTGATT+TGG | - | tig0020460:24980-24999 | Msa1381890:CDS | 15.0% |
| !! | AATAAGCTTAAAATAGATTA+TGG | + | tig0020460:25172-25191 | None:intergenic | 15.0% |
| !!! | TGATTATGTATAACTATTTT+TGG | + | tig0020460:25346-25365 | None:intergenic | 15.0% |
| !!! | AGCTTTAATACTTTTTATAT+TGG | - | tig0020460:25805-25824 | Msa1381890:intron | 15.0% |
| !!! | TACTTTTATTTGAATAAACA+AGG | - | tig0020460:26088-26107 | Msa1381890:intron | 15.0% |
| !! | TTTAATTGCAAAAATAACTT+TGG | + | tig0020460:28244-28263 | None:intergenic | 15.0% |
| !!! | AAATAAATAATGTAGTTTTG+AGG | + | tig0020460:28304-28323 | None:intergenic | 15.0% |
| !! | AAAAAATATAGAGAAAAGAA+TGG | + | tig0020460:28433-28452 | None:intergenic | 15.0% |
| !!! | TCATTTGTTTCTTATTTAAG+AGG | + | tig0020460:24611-24630 | None:intergenic | 20.0% |
| !! | AAATAAGAAACAAATGAAGT+CGG | - | tig0020460:24614-24633 | Msa1381890:three_prime_UTR | 20.0% |
| !! | CCAATAAATAAAATTGGATA+CGG | + | tig0020460:24922-24941 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAAATCTTC+AGG | - | tig0020460:25186-25205 | Msa1381890:CDS | 20.0% |
| !! | AATTTGTCTTCAATAAAAGA+GGG | + | tig0020460:25320-25339 | None:intergenic | 20.0% |
| !!! | TAATTTGTCTTCAATAAAAG+AGG | + | tig0020460:25321-25340 | None:intergenic | 20.0% |
| !! | ATTTGTATGTTGTTCTTATA+TGG | - | tig0020460:25427-25446 | Msa1381890:CDS | 20.0% |
| !! | TCAATACTAATATTCAAAGA+AGG | - | tig0020460:25459-25478 | Msa1381890:intron | 20.0% |
| !! | AATATTCAAAGAAGGTTATA+TGG | - | tig0020460:25467-25486 | Msa1381890:intron | 20.0% |
| !! | TATTTCAGTTGAAACATATA+GGG | + | tig0020460:25698-25717 | None:intergenic | 20.0% |
| !!! | TTTTATTTGAATAAACAAGG+AGG | - | tig0020460:26091-26110 | Msa1381890:intron | 20.0% |
| !! | TAACATTATTGGATTAATAC+TGG | - | tig0020460:26770-26789 | Msa1381890:intron | 20.0% |
| !!! | TCTTAATAACCAGATATTTT+AGG | - | tig0020460:27252-27271 | Msa1381890:intron | 20.0% |
| !!! | CTTAATAACCAGATATTTTA+GGG | - | tig0020460:27253-27272 | Msa1381890:intron | 20.0% |
| !! | TAGGGAATTGAATAAATTAT+TGG | - | tig0020460:27271-27290 | Msa1381890:intron | 20.0% |
| !! | TAATTAGAGGAGATATTATA+GGG | + | tig0020460:27478-27497 | None:intergenic | 20.0% |
| !! | TTAATTAGAGGAGATATTAT+AGG | + | tig0020460:27479-27498 | None:intergenic | 20.0% |
| !!! | AATTAATATTTTCTCCTGTT+AGG | - | tig0020460:27493-27512 | Msa1381890:CDS | 20.0% |
| !! | GATATAGCAGATAAAATAAT+TGG | - | tig0020460:28086-28105 | Msa1381890:intron | 20.0% |
| !!! | TACATTATTTATTTTCTCGT+TGG | - | tig0020460:28310-28329 | Msa1381890:intron | 20.0% |
| !!! | ACATTATTTATTTTCTCGTT+GGG | - | tig0020460:28311-28330 | Msa1381890:intron | 20.0% |
| !!! | TTGGTACTATTTTATATGTT+AGG | - | tig0020460:28395-28414 | Msa1381890:intron | 20.0% |
| !! | TTAAACAAGTGTTCAAATTA+TGG | + | tig0020460:28723-28742 | None:intergenic | 20.0% |
| !! | TTAAAATTACATATGTTGAC+AGG | - | tig0020460:28739-28758 | Msa1381890:intron | 20.0% |
| !! | TAAAATTACATATGTTGACA+GGG | - | tig0020460:28740-28759 | Msa1381890:intron | 20.0% |
| !!! | ATATTTTAATTAGATCTCGT+TGG | - | tig0020460:28931-28950 | Msa1381890:intron | 20.0% |
| !! | CAATAGATAATTAGATAATG+CGG | - | tig0020460:29469-29488 | Msa1381890:CDS | 20.0% |
| !! | AACATCAGTAATGAAATTTA+GGG | - | tig0020460:29560-29579 | Msa1381890:five_prime_UTR | 20.0% |
| ! | AATAACCAAAAGCCAAATTA+TGG | + | tig0020460:24441-24460 | None:intergenic | 25.0% |
| ! | GTTATTGTCTTGATTACATT+AGG | - | tig0020460:24455-24474 | Msa1381890:three_prime_UTR | 25.0% |
| !!! | TGGAGTTTTTTAATATTAGC+TGG | + | tig0020460:24519-24538 | None:intergenic | 25.0% |
| !!! | CCGTATCCAATTTTATTTAT+TGG | - | tig0020460:24919-24938 | Msa1381890:intron | 25.0% |
| ! | TCAAAAAAATCGATGAAAAG+AGG | + | tig0020460:25128-25147 | None:intergenic | 25.0% |
| ! | CATGCGATTTCAATAAAAAA+GGG | + | tig0020460:25297-25316 | None:intergenic | 25.0% |
| ! | ATTCGTGTAATATTCAAAGA+AGG | - | tig0020460:25387-25406 | Msa1381890:CDS | 25.0% |
| ! | CTTTGTATGTTGTTCTTATA+TGG | - | tig0020460:25536-25555 | Msa1381890:intron | 25.0% |
| ! | ACAAGACTATCAAGAAAAAT+AGG | + | tig0020460:25605-25624 | None:intergenic | 25.0% |
| ! | GTATTTCAGTTGAAACATAT+AGG | + | tig0020460:25699-25718 | None:intergenic | 25.0% |
| ! | TGTATATCATGTTATCTTGA+TGG | - | tig0020460:25720-25739 | Msa1381890:intron | 25.0% |
| ! | AGAGATCCTTGAAAATTTAT+GGG | + | tig0020460:25756-25775 | None:intergenic | 25.0% |
| ! | ATACAAGAACACTAAGATAT+AGG | + | tig0020460:25881-25900 | None:intergenic | 25.0% |
| ! | ACTGAGAAGAAAAGAAAAAT+AGG | + | tig0020460:26137-26156 | None:intergenic | 25.0% |
| ! | GTTCATGATTGAATTGTATT+AGG | - | tig0020460:26453-26472 | Msa1381890:intron | 25.0% |
| ! | ATAGCAAATGTTTCAGATAT+AGG | + | tig0020460:26571-26590 | None:intergenic | 25.0% |
| ! | ATATTAATTCGAAGCTTGAT+AGG | - | tig0020460:26593-26612 | Msa1381890:intron | 25.0% |
| ! | TTTGATCGAACAGTAAAAAA+TGG | + | tig0020460:26975-26994 | None:intergenic | 25.0% |
| ! | TGAAATGGTATTATCTAGTA+TGG | + | tig0020460:27188-27207 | None:intergenic | 25.0% |
| ! | TACTAGATAATACCATTTCA+TGG | - | tig0020460:27188-27207 | Msa1381890:intron | 25.0% |
| ! | ATAATACCATTTCATGGAAT+TGG | - | tig0020460:27194-27213 | Msa1381890:intron | 25.0% |
| ! | ATTCAATTCCCTAAAATATC+TGG | + | tig0020460:27264-27283 | None:intergenic | 25.0% |
| ! | AAGAAAATAAACAAATGCTG+TGG | - | tig0020460:27346-27365 | Msa1381890:intron | 25.0% |
| ! | TATATGTAAACTTTCTACCT+TGG | - | tig0020460:27442-27461 | Msa1381890:CDS | 25.0% |
| ! | ATATGTAAACTTTCTACCTT+GGG | - | tig0020460:27443-27462 | Msa1381890:CDS | 25.0% |
| ! | CAGGAGAAAATATTAATTAG+AGG | + | tig0020460:27491-27510 | None:intergenic | 25.0% |
| ! | TAGAAAATAAGATTCCTAAC+AGG | + | tig0020460:27510-27529 | None:intergenic | 25.0% |
| ! | TATCTTAACACAGTCTAAAA+TGG | + | tig0020460:27559-27578 | None:intergenic | 25.0% |
| ! | AGATGGAAATAATGTTTCTT+AGG | - | tig0020460:27666-27685 | Msa1381890:CDS | 25.0% |
| ! | AGCAAGAAAAGTCATTTATA+TGG | - | tig0020460:27791-27810 | Msa1381890:intron | 25.0% |
| !!! | TTAAGAGTGTTATTTGGTTA+TGG | + | tig0020460:27984-28003 | None:intergenic | 25.0% |
| ! | ATAACCAAATAACACTCTTA+AGG | - | tig0020460:27983-28002 | Msa1381890:CDS | 25.0% |
| ! | TACACAAGTCATAATATACA+AGG | - | tig0020460:28130-28149 | Msa1381890:intron | 25.0% |
| ! | ACACAAGTCATAATATACAA+GGG | - | tig0020460:28131-28150 | Msa1381890:intron | 25.0% |
| ! | AAATAAAGAATGCATGATGT+AGG | + | tig0020460:28358-28377 | None:intergenic | 25.0% |
| ! | GCACATATTCAGAAATTAAA+AGG | + | tig0020460:28527-28546 | None:intergenic | 25.0% |
| !!! | GTACATTATGAAACTTGTTA+CGG | + | tig0020460:28682-28701 | None:intergenic | 25.0% |
| ! | AGTTTCATAATGTACTTAGT+TGG | - | tig0020460:28687-28706 | Msa1381890:intron | 25.0% |
| !! | ATTTTGAATGAGTTTCAGAA+GGG | - | tig0020460:28789-28808 | Msa1381890:intron | 25.0% |
| !!! | TTTGAATCATTTTTGGAAGA+TGG | + | tig0020460:28864-28883 | None:intergenic | 25.0% |
| ! | TCTTCCAAAAATGATTCAAA+TGG | - | tig0020460:28864-28883 | Msa1381890:intron | 25.0% |
| !! | CTTACCATTTGAATCATTTT+TGG | + | tig0020460:28871-28890 | None:intergenic | 25.0% |
| !!! | TCAGATATTTTAGAGATAGA+TGG | - | tig0020460:29165-29184 | Msa1381890:intron | 25.0% |
| ! | ATAATTAGATAATGCGGTTT+AGG | - | tig0020460:29475-29494 | Msa1381890:CDS | 25.0% |
| ! | TAATTAGATAATGCGGTTTA+GGG | - | tig0020460:29476-29495 | Msa1381890:CDS | 25.0% |
| ! | GAACATCAGTAATGAAATTT+AGG | - | tig0020460:29559-29578 | Msa1381890:five_prime_UTR | 25.0% |
| !!! | TTTCTTTTTAGAGATGTATG+CGG | - | tig0020460:29615-29634 | Msa1381890:five_prime_UTR | 25.0% |
| !! | AAAAATATACCATGATTTGC+TGG | + | tig0020460:29674-29693 | None:intergenic | 25.0% |
| ! | CAAATTATGGTTATCGATTG+GGG | + | tig0020460:24428-24447 | None:intergenic | 30.0% |
| ! | CCAAATTATGGTTATCGATT+GGG | + | tig0020460:24429-24448 | None:intergenic | 30.0% |
| !!! | GATAACCATAATTTGGCTTT+TGG | - | tig0020460:24433-24452 | Msa1381890:three_prime_UTR | 30.0% |
| GAAAAGTAGTTAGAGTTTAG+TGG | + | tig0020460:24558-24577 | None:intergenic | 30.0% | |
| AGAAGATGATAACCAATATG+TGG | + | tig0020460:24728-24747 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATCATCTTCT+TGG | - | tig0020460:24728-24747 | Msa1381890:three_prime_UTR | 30.0% |
| GCATGCGATTTCAATAAAAA+AGG | + | tig0020460:25298-25317 | None:intergenic | 30.0% | |
| CAGTATTCAATAGTATTCGA+AGG | - | tig0020460:25493-25512 | Msa1381890:intron | 30.0% | |
| TATTCAATAGTATTCGAAGG+AGG | - | tig0020460:25496-25515 | Msa1381890:intron | 30.0% | |
| GGATTTAGTATTCAAAACCA+TGG | - | tig0020460:25557-25576 | Msa1381890:intron | 30.0% | |
| GAGAGATCCTTGAAAATTTA+TGG | + | tig0020460:25757-25776 | None:intergenic | 30.0% | |
| TGTATATCATTTCCTGACAA+AGG | - | tig0020460:25896-25915 | Msa1381890:intron | 30.0% | |
| GTATATCATTTCCTGACAAA+GGG | - | tig0020460:25897-25916 | Msa1381890:intron | 30.0% | |
| ATATCGAGAACAAACTGATT+GGG | + | tig0020460:25957-25976 | None:intergenic | 30.0% | |
| ! | ATCTACTAGTGTTTTCAACT+CGG | + | tig0020460:26233-26252 | None:intergenic | 30.0% |
| AAAACACTAGTAGATTTGCA+TGG | - | tig0020460:26238-26257 | Msa1381890:intron | 30.0% | |
| ATATATGTGTACTTCTCTTC+TGG | - | tig0020460:26379-26398 | Msa1381890:intron | 30.0% | |
| ATGATTGAATTGTATTAGGC+TGG | - | tig0020460:26457-26476 | Msa1381890:intron | 30.0% | |
| GATGAAACAACAATAATTGC+CGG | - | tig0020460:26502-26521 | Msa1381890:intron | 30.0% | |
| ATGAAACAACAATAATTGCC+GGG | - | tig0020460:26503-26522 | Msa1381890:intron | 30.0% | |
| ATGACTGAAATATTGGAGAA+AGG | - | tig0020460:26711-26730 | Msa1381890:intron | 30.0% | |
| ! | TACAGCATCTTTTCATCTAA+TGG | + | tig0020460:26849-26868 | None:intergenic | 30.0% |
| !! | TCTTAGACAACTTAAGTTGA+AGG | - | tig0020460:27153-27172 | Msa1381890:intron | 30.0% |
| !! | CTTAGACAACTTAAGTTGAA+GGG | - | tig0020460:27154-27173 | Msa1381890:intron | 30.0% |
| AATGGTATTATCTAGTATGG+AGG | + | tig0020460:27185-27204 | None:intergenic | 30.0% | |
| AAAATTGTGCGTCATGTTAT+TGG | - | tig0020460:27397-27416 | Msa1381890:intron | 30.0% | |
| GACTGTGTTAAGATATTAAG+AGG | - | tig0020460:27564-27583 | Msa1381890:intron | 30.0% | |
| ATTTCTACTAACCAAAGAAC+AGG | - | tig0020460:27612-27631 | Msa1381890:CDS | 30.0% | |
| TGTGATATTTATGTCATTCC+TGG | - | tig0020460:27879-27898 | Msa1381890:intron | 30.0% | |
| GTGATATTTATGTCATTCCT+GGG | - | tig0020460:27880-27899 | Msa1381890:intron | 30.0% | |
| TGATATTTATGTCATTCCTG+GGG | - | tig0020460:27881-27900 | Msa1381890:intron | 30.0% | |
| !! | GAAACCTTAAGAGTGTTATT+TGG | + | tig0020460:27990-28009 | None:intergenic | 30.0% |
| AGCGATATATATCTTACTAG+TGG | + | tig0020460:28044-28063 | None:intergenic | 30.0% | |
| ! | ATATATCGCTTTCAAGTCTT+CGG | - | tig0020460:28054-28073 | Msa1381890:intron | 30.0% |
| AGGATATATACAAGATACCT+TGG | + | tig0020460:28632-28651 | None:intergenic | 30.0% | |
| GTATCTTGTATATATCCTGT+GGG | - | tig0020460:28634-28653 | Msa1381890:intron | 30.0% | |
| TCATTCAAAATGTCATACAG+CGG | + | tig0020460:28780-28799 | None:intergenic | 30.0% | |
| ! | CATTTTGAATGAGTTTCAGA+AGG | - | tig0020460:28788-28807 | Msa1381890:intron | 30.0% |
| ! | TTTTGAATGAGTTTCAGAAG+GGG | - | tig0020460:28790-28809 | Msa1381890:intron | 30.0% |
| TAAAATAGATTCTGTGAGAG+AGG | - | tig0020460:28999-29018 | Msa1381890:intron | 30.0% | |
| AAATACGAACAAGTCGAATA+GGG | - | tig0020460:29107-29126 | Msa1381890:CDS | 30.0% | |
| AGCTGTTGGAATAATTACAA+TGG | - | tig0020460:29221-29240 | Msa1381890:intron | 30.0% | |
| TGTTGGAATAATTACAATGG+AGG | - | tig0020460:29224-29243 | Msa1381890:intron | 30.0% | |
| ! | TGTTATTGAAGAGCTTTTAC+AGG | - | tig0020460:29248-29267 | Msa1381890:intron | 30.0% |
| !! | ATTTTGAAGACTCATGACAA+TGG | - | tig0020460:29401-29420 | Msa1381890:CDS | 30.0% |
| ! | TTCATTAAACCTAGCGTTTT+TGG | - | tig0020460:29428-29447 | Msa1381890:CDS | 30.0% |
| !!! | GTTTTTGGAATTTCGTTGTT+TGG | - | tig0020460:29443-29462 | Msa1381890:CDS | 30.0% |
| ! | ATAGTTGATACCTACTTGTT+TGG | - | tig0020460:29704-29723 | Msa1381890:five_prime_UTR | 30.0% |
| CCCAATCGATAACCATAATT+TGG | - | tig0020460:24426-24445 | Msa1381890:three_prime_UTR | 35.0% | |
| GCCAAATTATGGTTATCGAT+TGG | + | tig0020460:24430-24449 | None:intergenic | 35.0% | |
| ATTGGTTATCATCTTCTTGG+TGG | - | tig0020460:24731-24750 | Msa1381890:three_prime_UTR | 35.0% | |
| AGTTAGTTACGTTACGTTAC+CGG | + | tig0020460:24862-24881 | None:intergenic | 35.0% | |
| CTTTAGCAGCTTCATGTTAT+TGG | - | tig0020460:24955-24974 | Msa1381890:CDS | 35.0% | |
| !! | AAATGCTGATTTCTCACAAC+AGG | + | tig0020460:25053-25072 | None:intergenic | 35.0% |
| GTATTCAAAACCATGGTTGT+TGG | - | tig0020460:25564-25583 | Msa1381890:intron | 35.0% | |
| !! | TTGATAGTCTTGTTACTGCT+TGG | - | tig0020460:25612-25631 | Msa1381890:CDS | 35.0% |
| !! | TGATAGTCTTGTTACTGCTT+GGG | - | tig0020460:25613-25632 | Msa1381890:CDS | 35.0% |
| ! | CTTCGTCCCATAAATTTTCA+AGG | - | tig0020460:25747-25766 | Msa1381890:intron | 35.0% |
| CAACATTCAATATGACCCTA+GGG | + | tig0020460:25779-25798 | None:intergenic | 35.0% | |
| TATCGAGAACAAACTGATTG+GGG | + | tig0020460:25956-25975 | None:intergenic | 35.0% | |
| CATATCGAGAACAAACTGAT+TGG | + | tig0020460:25958-25977 | None:intergenic | 35.0% | |
| ! | CAATCAGTTTGTTCTCGATA+TGG | - | tig0020460:25956-25975 | Msa1381890:intron | 35.0% |
| ! | AGTTTGTTCTCGATATGGTT+TGG | - | tig0020460:25961-25980 | Msa1381890:intron | 35.0% |
| TTGCTAATTGGAAAAGCAAC+TGG | + | tig0020460:26040-26059 | None:intergenic | 35.0% | |
| !!! | AGTTGCTTTTCCAATTAGCA+AGG | - | tig0020460:26039-26058 | Msa1381890:intron | 35.0% |
| ATGTATGTCACCTTGCTAAT+TGG | + | tig0020460:26052-26071 | None:intergenic | 35.0% | |
| CAGTTGTTAGACTATTTGCT+GGG | - | tig0020460:26178-26197 | Msa1381890:intron | 35.0% | |
| ! | AGTAGATTTGCATGGTAATG+AGG | - | tig0020460:26246-26265 | Msa1381890:intron | 35.0% |
| ! | GTTCTTTTTAACACTGCACT+TGG | - | tig0020460:26401-26420 | Msa1381890:intron | 35.0% |
| TTGGAATTCATGCTTACACA+TGG | - | tig0020460:26420-26439 | Msa1381890:intron | 35.0% | |
| GAATTGTATTAGGCTGGAAA+AGG | - | tig0020460:26463-26482 | Msa1381890:intron | 35.0% | |
| TGAAACAACAATAATTGCCG+GGG | - | tig0020460:26504-26523 | Msa1381890:intron | 35.0% | |
| TTAAATACCTATTACCGAGC+AGG | - | tig0020460:26682-26701 | Msa1381890:intron | 35.0% | |
| TAAATACCTATTACCGAGCA+GGG | - | tig0020460:26683-26702 | Msa1381890:intron | 35.0% | |
| GGAACTGATGACTGAAATAT+TGG | - | tig0020460:26704-26723 | Msa1381890:intron | 35.0% | |
| TAGACTGCTCATAAAAGACT+GGG | + | tig0020460:26749-26768 | None:intergenic | 35.0% | |
| GAGCAGTCTACTAACATTAT+TGG | - | tig0020460:26759-26778 | Msa1381890:intron | 35.0% | |
| TGTAAAAACCACATACAGCT+TGG | - | tig0020460:26865-26884 | Msa1381890:intron | 35.0% | |
| TATCCTGAGGATTAATATGC+AGG | - | tig0020460:26945-26964 | Msa1381890:intron | 35.0% | |
| !!! | TCTCGCGATTCACTTTTTTA+AGG | - | tig0020460:27020-27039 | Msa1381890:intron | 35.0% |
| ! | TGGAGTTGATTACAGATGAT+AGG | - | tig0020460:27417-27436 | Msa1381890:intron | 35.0% |
| !!! | TTTCATTTTAGAGCCGTAAG+TGG | - | tig0020460:27533-27552 | Msa1381890:intron | 35.0% |
| AAATTCTAGCCATGCCAATA+GGG | + | tig0020460:27596-27615 | None:intergenic | 35.0% | |
| ! | CAAATGTTTCTTTTCAGCTG+TGG | - | tig0020460:27747-27766 | Msa1381890:intron | 35.0% |
| ATACTAAGATCGTTTCGTAG+TGG | + | tig0020460:27953-27972 | None:intergenic | 35.0% | |
| ! | TTCTGAGAGCTGTAATTTGA+TGG | - | tig0020460:28007-28026 | Msa1381890:CDS | 35.0% |
| ! | TATATCGCTTTCAAGTCTTC+GGG | - | tig0020460:28055-28074 | Msa1381890:intron | 35.0% |
| GTCATAATATACAAGGGTTC+TGG | - | tig0020460:28137-28156 | Msa1381890:intron | 35.0% | |
| ! | ACAACTGGCTTAACTAATGA+TGG | + | tig0020460:28171-28190 | None:intergenic | 35.0% |
| TAAGCCAGTTGTGATATTTG+TGG | - | tig0020460:28179-28198 | Msa1381890:CDS | 35.0% | |
| ACAACCACAAATATCACAAC+TGG | + | tig0020460:28186-28205 | None:intergenic | 35.0% | |
| ! | GAACACATGTACTCGATTTT+AGG | - | tig0020460:28207-28226 | Msa1381890:CDS | 35.0% |
| AAGAATGCATGATGTAGGTA+TGG | + | tig0020460:28353-28372 | None:intergenic | 35.0% | |
| TTTGTTCCTACGATTCTGTT+TGG | - | tig0020460:28376-28395 | Msa1381890:intron | 35.0% | |
| ATAGTACCAAACAGAATCGT+AGG | + | tig0020460:28385-28404 | None:intergenic | 35.0% | |
| GGTATCTTGTATATATCCTG+TGG | - | tig0020460:28633-28652 | Msa1381890:intron | 35.0% | |
| !! | ATTTTTGGAAGATGGTTGCT+TGG | + | tig0020460:28856-28875 | None:intergenic | 35.0% |
| !!! | CACTTTTGGATTGGTATCTT+GGG | + | tig0020460:29075-29094 | None:intergenic | 35.0% |
| !! | AAGCTTTTCCACTTTTGGAT+TGG | + | tig0020460:29084-29103 | None:intergenic | 35.0% |
| ! | TTGGAAAGCTTTTCCACTTT+TGG | + | tig0020460:29089-29108 | None:intergenic | 35.0% |
| ! | CTATTCGACTTGTTCGTATT+TGG | + | tig0020460:29108-29127 | None:intergenic | 35.0% |
| CAAATACGAACAAGTCGAAT+AGG | - | tig0020460:29106-29125 | Msa1381890:CDS | 35.0% | |
| AATACGAACAAGTCGAATAG+GGG | - | tig0020460:29108-29127 | Msa1381890:CDS | 35.0% | |
| TTCTTCAGGGATATTTGGAA+GGG | + | tig0020460:29196-29215 | None:intergenic | 35.0% | |
| TCTTCTTCTTCAGGGATATT+TGG | + | tig0020460:29201-29220 | None:intergenic | 35.0% | |
| TTCTACCAAGATTTCAAGAG+TGG | + | tig0020460:29303-29322 | None:intergenic | 35.0% | |
| !! | ACTCACGTCTATTTTTCTGT+AGG | - | tig0020460:29351-29370 | Msa1381890:intron | 35.0% |
| AACGAAATTCCAAAAACGCT+AGG | + | tig0020460:29440-29459 | None:intergenic | 35.0% | |
| TTCCTTCAAAAAGATACCTG+AGG | - | tig0020460:29528-29547 | Msa1381890:exon | 35.0% | |
| GGTACACTAATGTGTCTTTA+AGG | - | tig0020460:29636-29655 | Msa1381890:five_prime_UTR | 35.0% | |
| !! | AATGTGTCTTTAAGGCAATG+AGG | - | tig0020460:29644-29663 | Msa1381890:five_prime_UTR | 35.0% |
| GGAATGTAATCCAAACAAGT+AGG | + | tig0020460:29717-29736 | None:intergenic | 35.0% | |
| ACATTTCGTGAATTTGACCA+AGG | - | tig0020460:29749-29768 | Msa1381890:five_prime_UTR | 35.0% | |
| ! | ATCGCTATGTATTTTCTCCT+TGG | + | tig0020460:29769-29788 | None:intergenic | 35.0% |
| GAAACAAATGAAGTCGGTGA+TGG | - | tig0020460:24620-24639 | Msa1381890:three_prime_UTR | 40.0% | |
| ! | GAAGAGAGAGAAAGTGTGAA+TGG | - | tig0020460:24665-24684 | Msa1381890:three_prime_UTR | 40.0% |
| GGAGTTCTTCATCCACATAT+TGG | - | tig0020460:24713-24732 | Msa1381890:three_prime_UTR | 40.0% | |
| CTTGAAGTTCTTGCTAAGTC+TGG | - | tig0020460:24813-24832 | Msa1381890:CDS | 40.0% | |
| CCTGAAAAAACCAACAACCA+TGG | + | tig0020460:25577-25596 | None:intergenic | 40.0% | |
| !!! | CCATGGTTGTTGGTTTTTTC+AGG | - | tig0020460:25574-25593 | Msa1381890:intron | 40.0% |
| !! | GATAGTCTTGTTACTGCTTG+GGG | - | tig0020460:25614-25633 | Msa1381890:CDS | 40.0% |
| GAATCAACGTGACTGAAATC+AGG | + | tig0020460:25646-25665 | None:intergenic | 40.0% | |
| !! | GTCACGTTGATTCTTCTCTT+TGG | - | tig0020460:25653-25672 | Msa1381890:intron | 40.0% |
| ! | GTTGATTCTTCTCTTTGGTG+AGG | - | tig0020460:25658-25677 | Msa1381890:intron | 40.0% |
| !! | ATTTTCAAGGATCTCTCCCT+AGG | - | tig0020460:25760-25779 | Msa1381890:intron | 40.0% |
| !! | TTTTCAAGGATCTCTCCCTA+GGG | - | tig0020460:25761-25780 | Msa1381890:intron | 40.0% |
| CCAACATTCAATATGACCCT+AGG | + | tig0020460:25780-25799 | None:intergenic | 40.0% | |
| CCTAGGGTCATATTGAATGT+TGG | - | tig0020460:25777-25796 | Msa1381890:intron | 40.0% | |
| AACATATCCATACAAGCACG+CGG | + | tig0020460:26015-26034 | None:intergenic | 40.0% | |
| CCAGCAAATAGTCTAACAAC+TGG | + | tig0020460:26180-26199 | None:intergenic | 40.0% | |
| CCAGTTGTTAGACTATTTGC+TGG | - | tig0020460:26177-26196 | Msa1381890:intron | 40.0% | |
| AGCGACTGAAATGTCACTAA+AGG | - | tig0020460:26356-26375 | Msa1381890:intron | 40.0% | |
| TTCATGCTTACACATGGTTG+TGG | - | tig0020460:26426-26445 | Msa1381890:intron | 40.0% | |
| TTGTATTAGGCTGGAAAAGG+TGG | - | tig0020460:26466-26485 | Msa1381890:intron | 40.0% | |
| TGTATTAGGCTGGAAAAGGT+GGG | - | tig0020460:26467-26486 | Msa1381890:intron | 40.0% | |
| TATAGGAGTCATAGCATCAC+TGG | + | tig0020460:26554-26573 | None:intergenic | 40.0% | |
| GTAGACTGCTCATAAAAGAC+TGG | + | tig0020460:26750-26769 | None:intergenic | 40.0% | |
| TGAGTGTTCTTCAGTGCTAA+TGG | + | tig0020460:26822-26841 | None:intergenic | 40.0% | |
| TGACCTGCATATTAATCCTC+AGG | + | tig0020460:26951-26970 | None:intergenic | 40.0% | |
| AGTGATGATATTGTCTCACG+TGG | + | tig0020460:27085-27104 | None:intergenic | 40.0% | |
| CGTGAGACAATATCATCACT+TGG | - | tig0020460:27085-27104 | Msa1381890:intron | 40.0% | |
| ! | AGTGCTTAACAGAGCACTTT+AGG | - | tig0020460:27117-27136 | Msa1381890:intron | 40.0% |
| GAGACTCCAATTCCATGAAA+TGG | + | tig0020460:27203-27222 | None:intergenic | 40.0% | |
| ACACTTCATGCTGAGTATGT+TGG | - | tig0020460:27317-27336 | Msa1381890:intron | 40.0% | |
| AAACAAATGCTGTGGCATAC+AGG | - | tig0020460:27354-27373 | Msa1381890:intron | 40.0% | |
| ! | CAGTCTAAAATGGCCACTTA+CGG | + | tig0020460:27549-27568 | None:intergenic | 40.0% |
| TTAAGAGGACATTGCCCTAT+TGG | - | tig0020460:27579-27598 | Msa1381890:intron | 40.0% | |
| GAAATTCTAGCCATGCCAAT+AGG | + | tig0020460:27597-27616 | None:intergenic | 40.0% | |
| CTGAACTATTTAGAGAGCAG+AGG | - | tig0020460:27643-27662 | Msa1381890:CDS | 40.0% | |
| TATTTAGAGAGCAGAGGAGA+TGG | - | tig0020460:27649-27668 | Msa1381890:CDS | 40.0% | |
| ! | CTGTGGAGTATTTGAGCTAT+AGG | - | tig0020460:27764-27783 | Msa1381890:intron | 40.0% |
| AAGACCTTAGACTGAAACCT+AGG | + | tig0020460:27860-27879 | None:intergenic | 40.0% | |
| ! | ATGCTGCTTGTGTAGACTTT+GGG | - | tig0020460:28269-28288 | Msa1381890:intron | 40.0% |
| TTTACAGGCGATTCATCTTC+TGG | + | tig0020460:28587-28606 | None:intergenic | 40.0% | |
| CGTATGGTTACACTCTTTAC+AGG | + | tig0020460:28602-28621 | None:intergenic | 40.0% | |
| ! | TAAAGAGTGTAACCATACGC+AGG | - | tig0020460:28603-28622 | Msa1381890:intron | 40.0% |
| ATCGCATTGTCGTACAACAA+CGG | + | tig0020460:28829-28848 | None:intergenic | 40.0% | |
| TTCAAGACTTTCTCTTGGAG+AGG | + | tig0020460:29051-29070 | None:intergenic | 40.0% | |
| TGGGTTTCAAGACTTTCTCT+TGG | + | tig0020460:29056-29075 | None:intergenic | 40.0% | |
| !!! | CCACTTTTGGATTGGTATCT+TGG | + | tig0020460:29076-29095 | None:intergenic | 40.0% |
| CCAAGATACCAATCCAAAAG+TGG | - | tig0020460:29073-29092 | Msa1381890:intron | 40.0% | |
| TCTTCAGGGATATTTGGAAG+GGG | + | tig0020460:29195-29214 | None:intergenic | 40.0% | |
| CTTCTTCAGGGATATTTGGA+AGG | + | tig0020460:29197-29216 | None:intergenic | 40.0% | |
| CAACAGCTTCTTCTTCTTCA+GGG | + | tig0020460:29209-29228 | None:intergenic | 40.0% | |
| CAAGATTTCAAGAGTGGATG+AGG | + | tig0020460:29297-29316 | None:intergenic | 40.0% | |
| CTCATCCACTCTTGAAATCT+TGG | - | tig0020460:29295-29314 | Msa1381890:intron | 40.0% | |
| !! | CACGTCTATTTTTCTGTAGG+AGG | - | tig0020460:29354-29373 | Msa1381890:intron | 40.0% |
| ! | AGCTGCTGTTTAGATATCTG+AGG | - | tig0020460:29503-29522 | Msa1381890:CDS | 40.0% |
| ! | CACCTCAGGTATCTTTTTGA+AGG | + | tig0020460:29533-29552 | None:intergenic | 40.0% |
| TGATGTTCTAATCACACCTC+AGG | + | tig0020460:29547-29566 | None:intergenic | 40.0% | |
| ACGAAATGTTCTCGCGAAAT+AGG | + | tig0020460:29738-29757 | None:intergenic | 40.0% | |
| ! | GTGATGGAACTCATCTGAAG+CGG | - | tig0020460:24636-24655 | Msa1381890:three_prime_UTR | 45.0% |
| ! | GAGAGAGAAAGTGTGAATGG+CGG | - | tig0020460:24668-24687 | Msa1381890:three_prime_UTR | 45.0% |
| GGAATACACATGCTGCGAAT+CGG | - | tig0020460:24692-24711 | Msa1381890:three_prime_UTR | 45.0% | |
| TTAATGTCCGGACTCACCTT+AGG | - | tig0020460:24765-24784 | Msa1381890:three_prime_UTR | 45.0% | |
| ACTGAGAGACATGAGACCTA+AGG | + | tig0020460:24784-24803 | None:intergenic | 45.0% | |
| AAGAGGTAGTAGTACCTCCA+TGG | + | tig0020460:25111-25130 | None:intergenic | 45.0% | |
| ! | TCTCGATATGGTTTGGCCAT+TGG | - | tig0020460:25968-25987 | Msa1381890:intron | 45.0% |
| ! | GTGTTTTCAACTCGGCTCTA+CGG | + | tig0020460:26225-26244 | None:intergenic | 45.0% |
| GTATTAGGCTGGAAAAGGTG+GGG | - | tig0020460:26468-26487 | Msa1381890:intron | 45.0% | |
| AGTTGAGTCCAAGCTGTATG+TGG | + | tig0020460:26876-26895 | None:intergenic | 45.0% | |
| GTGGCAACTTTCTTATCCTG+AGG | - | tig0020460:26932-26951 | Msa1381890:intron | 45.0% | |
| ! | GCGAGAGTCTGATAGTTTTC+AGG | + | tig0020460:27006-27025 | None:intergenic | 45.0% |
| GATGATATTGTCTCACGTGG+AGG | + | tig0020460:27082-27101 | None:intergenic | 45.0% | |
| CAGAGTTCAGACCTGTTCTT+TGG | + | tig0020460:27626-27645 | None:intergenic | 45.0% | |
| CAGCTCATCACACATAGAGA+TGG | + | tig0020460:27835-27854 | None:intergenic | 45.0% | |
| CATCTCTATGTGTGATGAGC+TGG | - | tig0020460:27833-27852 | Msa1381890:intron | 45.0% | |
| TGGTCCTAGGTTTCAGTCTA+AGG | - | tig0020460:27853-27872 | Msa1381890:intron | 45.0% | |
| TTATGTCATTCCTGGGGAGA+TGG | - | tig0020460:27887-27906 | Msa1381890:intron | 45.0% | |
| !!! | TGTTTTAACTGCCTCCTGCA+TGG | - | tig0020460:27923-27942 | Msa1381890:intron | 45.0% |
| ! | GATGCTGCTTGTGTAGACTT+TGG | - | tig0020460:28268-28287 | Msa1381890:intron | 45.0% |
| GCTTGTGTAGACTTTGGGTA+TGG | - | tig0020460:28274-28293 | Msa1381890:intron | 45.0% | |
| TAACCATACGCAGGATTCCA+AGG | - | tig0020460:28612-28631 | Msa1381890:intron | 45.0% | |
| ATACCTTGGAATCCTGCGTA+TGG | + | tig0020460:28618-28637 | None:intergenic | 45.0% | |
| !! | AACTTGTTACGGCAAGTGTG+AGG | + | tig0020460:28671-28690 | None:intergenic | 45.0% |
| TCATACAGCGGCATACTTTC+TGG | + | tig0020460:28768-28787 | None:intergenic | 45.0% | |
| AGATTCTGTGAGAGAGGTGA+AGG | - | tig0020460:29005-29024 | Msa1381890:intron | 45.0% | |
| GAGGTGAAGGTGGATATTGA+TGG | - | tig0020460:29018-29037 | Msa1381890:intron | 45.0% | |
| ACAAGTCGAATAGGGGTTCT+CGG | - | tig0020460:29115-29134 | Msa1381890:CDS | 45.0% | |
| CCAACAGCTTCTTCTTCTTC+AGG | + | tig0020460:29210-29229 | None:intergenic | 45.0% | |
| CCTGAAGAAGAAGAAGCTGT+TGG | - | tig0020460:29207-29226 | Msa1381890:intron | 45.0% | |
| GAGTTTAGTGGCGTGTGTTG+TGG | + | tig0020460:24546-24565 | None:intergenic | 50.0% | |
| ! | AGAGAAAGTGTGAATGGCGG+TGG | - | tig0020460:24671-24690 | Msa1381890:three_prime_UTR | 50.0% |
| ! | ATCTTCTTGGTGGTCTTCGC+CGG | - | tig0020460:24741-24760 | Msa1381890:three_prime_UTR | 50.0% |
| !! | GTCTTCGCCGGTTTAATGTC+CGG | - | tig0020460:24753-24772 | Msa1381890:three_prime_UTR | 50.0% |
| GGTGAGTCCGGACATTAAAC+CGG | + | tig0020460:24763-24782 | None:intergenic | 50.0% | |
| CATGAGACCTAAGGTGAGTC+CGG | + | tig0020460:24775-24794 | None:intergenic | 50.0% | |
| AGGTAGTAGTACCTCCATGG+CGG | + | tig0020460:25108-25127 | None:intergenic | 50.0% | |
| GTGTGTTAGAGCCCTTTGTC+AGG | + | tig0020460:25911-25930 | None:intergenic | 50.0% | |
| AGGAGTGACTGATGCACCAA+TGG | + | tig0020460:25987-26006 | None:intergenic | 50.0% | |
| CATACAAGCACGCGGACAAA+AGG | + | tig0020460:26007-26026 | None:intergenic | 50.0% | |
| ! | CTTTTGTCCGCGTGCTTGTA+TGG | - | tig0020460:26005-26024 | Msa1381890:intron | 50.0% |
| CAACTCGGCTCTACGGAAAA+GGG | + | tig0020460:26218-26237 | None:intergenic | 50.0% | |
| TCAACTCGGCTCTACGGAAA+AGG | + | tig0020460:26219-26238 | None:intergenic | 50.0% | |
| TCAGTTCCCTGCTCGGTAAT+AGG | + | tig0020460:26692-26711 | None:intergenic | 50.0% | |
| TCAGTCATCAGTTCCCTGCT+CGG | + | tig0020460:26699-26718 | None:intergenic | 50.0% | |
| TATAGGGTCAGTAGTGCCCA+AGG | + | tig0020460:27462-27481 | None:intergenic | 50.0% | |
| AGGACATTGCCCTATTGGCA+TGG | - | tig0020460:27584-27603 | Msa1381890:intron | 50.0% | |
| ATGTGTGATGAGCTGGTCCT+AGG | - | tig0020460:27840-27859 | Msa1381890:intron | 50.0% | |
| TTTGCTTCAACCATCTCCCC+AGG | + | tig0020460:27900-27919 | None:intergenic | 50.0% | |
| TTTAACTGCCTCCTGCATGG+TGG | - | tig0020460:27926-27945 | Msa1381890:intron | 50.0% | |
| ! | TCAGAAGGGGCATAGTCACA+TGG | - | tig0020460:28803-28822 | Msa1381890:intron | 50.0% |
| TTCTGTGAGAGAGGTGAAGG+TGG | - | tig0020460:29008-29027 | Msa1381890:intron | 50.0% | |
| TGAGGCATGCCAGCAAATCA+TGG | - | tig0020460:29662-29681 | Msa1381890:five_prime_UTR | 50.0% | |
| GTGGCGTGTGTTGTGGTAGA+TGG | + | tig0020460:24539-24558 | None:intergenic | 55.0% | |
| CCTCACGATCGTAAACACGC+CGG | - | tig0020460:24840-24859 | Msa1381890:intron | 55.0% | |
| TAGTAGTACCTCCATGGCGG+CGG | + | tig0020460:25105-25124 | None:intergenic | 55.0% | |
| CTCACTGAGTTCAAGTGCCC+CGG | + | tig0020460:26524-26543 | None:intergenic | 55.0% | |
| !! | TTCGTAGTGGACCACCATGC+AGG | + | tig0020460:27940-27959 | None:intergenic | 55.0% |
| GAGGTGAGTAGAAGTCCCAC+AGG | + | tig0020460:28652-28671 | None:intergenic | 55.0% | |
| GGGGTTCTCGGAGCAGAAAA+TGG | - | tig0020460:29127-29146 | Msa1381890:CDS | 55.0% | |
| CCGGCGTGTTTACGATCGTG+AGG | + | tig0020460:24843-24862 | None:intergenic | 60.0% | |
| CATTTGCAATGCCGCCGCCA+TGG | - | tig0020460:25091-25110 | Msa1381890:CDS | 60.0% | |
| !! | GTAGTGGACCACCATGCAGG+AGG | + | tig0020460:27937-27956 | None:intergenic | 60.0% |
| TTGCAATGCCGCCGCCATGG+AGG | - | tig0020460:25094-25113 | Msa1381890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020460 | gene | 24404 | 29812 | 24404 | ID=Msa1381890;Name=Msa1381890 |
| tig0020460 | mRNA | 24404 | 29812 | 24404 | ID=Msa1381890-mRNA-1;Parent=Msa1381890;Name=Msa1381890-mRNA-1;_AED=0.22;_eAED=0.22;_QI=280|1|1|1|1|1|11|395|424 |
| tig0020460 | exon | 24404 | 24843 | 24404 | ID=Msa1381890-mRNA-1:exon:7864;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 24947 | 25209 | 24947 | ID=Msa1381890-mRNA-1:exon:7863;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 25331 | 25455 | 25331 | ID=Msa1381890-mRNA-1:exon:7862;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 25583 | 25656 | 25583 | ID=Msa1381890-mRNA-1:exon:7861;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 27425 | 27512 | 27425 | ID=Msa1381890-mRNA-1:exon:7860;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 27602 | 27741 | 27602 | ID=Msa1381890-mRNA-1:exon:7859;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 27949 | 28035 | 27949 | ID=Msa1381890-mRNA-1:exon:7858;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 28156 | 28269 | 28156 | ID=Msa1381890-mRNA-1:exon:7857;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 28537 | 28620 | 28537 | ID=Msa1381890-mRNA-1:exon:7856;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 29101 | 29177 | 29101 | ID=Msa1381890-mRNA-1:exon:7855;Parent=Msa1381890-mRNA-1 |
| tig0020460 | exon | 29355 | 29812 | 29355 | ID=Msa1381890-mRNA-1:exon:7854;Parent=Msa1381890-mRNA-1 |
| tig0020460 | five_prime_UTR | 29533 | 29812 | 29533 | ID=Msa1381890-mRNA-1:five_prime_utr;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 29355 | 29532 | 29355 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 29101 | 29177 | 29101 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 28537 | 28620 | 28537 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 28156 | 28269 | 28156 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 27949 | 28035 | 27949 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 27602 | 27741 | 27602 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 27425 | 27512 | 27425 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 25583 | 25656 | 25583 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 25331 | 25455 | 25331 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 24947 | 25209 | 24947 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | CDS | 24799 | 24843 | 24799 | ID=Msa1381890-mRNA-1:cds;Parent=Msa1381890-mRNA-1 |
| tig0020460 | three_prime_UTR | 24404 | 24798 | 24404 | ID=Msa1381890-mRNA-1:three_prime_utr;Parent=Msa1381890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
