Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0655690 | XP_039685512.1 | 98.812 | 421 | 5 | 0 | 1 | 421 | 1 | 421 | 0.0 | 869 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0655690 | sp|F4IPE3|IDD15_ARATH | 57.482 | 421 | 151 | 9 | 17 | 421 | 34 | 442 | 2.72e-163 | 469 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0655690 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0616220 | Msa0655690 | 0.853697 | 2.013401e-61 | -8.615850e-47 |
Msa0655690 | Msa0661790 | 0.804989 | 1.657751e-49 | -8.615850e-47 |
Msa0655690 | Msa0691980 | 0.830742 | 2.474379e-55 | -8.615850e-47 |
Msa0655690 | Msa0699550 | 0.848712 | 5.145339e-60 | -8.615850e-47 |
Msa0655690 | Msa1370010 | 0.811195 | 7.904871e-51 | -8.615850e-47 |
Msa0386850 | Msa0655690 | 0.835042 | 2.112841e-56 | -8.615850e-47 |
Msa0562340 | Msa0655690 | 0.965515 | 1.052408e-124 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0655690 | MtrunA17_Chr8g0375521 | 98.812 | 421 | 5 | 0 | 1 | 421 | 1 | 421 | 0.0 | 869 |
Msa0655690 | MtrunA17_Chr6g0479921 | 58.278 | 453 | 127 | 11 | 16 | 418 | 17 | 457 | 1.34e-169 | 483 |
Msa0655690 | MtrunA17_Chr1g0181381 | 64.103 | 156 | 55 | 1 | 27 | 182 | 38 | 192 | 2.09e-73 | 238 |
Msa0655690 | MtrunA17_Chr1g0185121 | 49.793 | 241 | 108 | 5 | 27 | 261 | 40 | 273 | 2.15e-73 | 236 |
Msa0655690 | MtrunA17_Chr1g0210821 | 45.669 | 254 | 133 | 4 | 30 | 280 | 47 | 298 | 1.08e-72 | 238 |
Msa0655690 | MtrunA17_Chr7g0263941 | 59.116 | 181 | 66 | 3 | 8 | 182 | 9 | 187 | 1.45e-72 | 233 |
Msa0655690 | MtrunA17_Chr8g0342421 | 64.103 | 156 | 54 | 2 | 27 | 182 | 62 | 215 | 5.19e-72 | 235 |
Msa0655690 | MtrunA17_Chr8g0373541 | 57.143 | 189 | 67 | 4 | 2 | 182 | 4 | 186 | 1.62e-71 | 233 |
Msa0655690 | MtrunA17_Chr2g0330171 | 63.462 | 156 | 55 | 2 | 27 | 182 | 46 | 199 | 3.62e-71 | 231 |
Msa0655690 | MtrunA17_Chr2g0326381 | 62.179 | 156 | 58 | 1 | 27 | 182 | 32 | 186 | 4.20e-71 | 229 |
Msa0655690 | MtrunA17_Chr1g0191991 | 64.744 | 156 | 53 | 2 | 27 | 182 | 63 | 216 | 7.00e-71 | 232 |
Msa0655690 | MtrunA17_Chr1g0151351 | 61.392 | 158 | 60 | 1 | 27 | 184 | 41 | 197 | 1.18e-70 | 229 |
Msa0655690 | MtrunA17_Chr4g0040571 | 64.103 | 156 | 54 | 2 | 27 | 182 | 39 | 192 | 2.97e-70 | 230 |
Msa0655690 | MtrunA17_Chr1g0199101 | 60.897 | 156 | 59 | 2 | 27 | 182 | 47 | 200 | 4.02e-69 | 228 |
Msa0655690 | MtrunA17_Chr4g0029521 | 60.256 | 156 | 61 | 1 | 27 | 182 | 38 | 192 | 4.36e-69 | 226 |
Msa0655690 | MtrunA17_Chr1g0163001 | 61.538 | 156 | 58 | 2 | 27 | 182 | 43 | 196 | 4.33e-68 | 225 |
Msa0655690 | MtrunA17_Chr1g0162971 | 59.615 | 156 | 61 | 2 | 27 | 182 | 41 | 194 | 4.46e-68 | 223 |
Msa0655690 | MtrunA17_Chr7g0268961 | 67.123 | 146 | 46 | 2 | 37 | 182 | 32 | 175 | 5.08e-68 | 224 |
Msa0655690 | MtrunA17_Chr3g0141431 | 58.974 | 156 | 63 | 1 | 27 | 182 | 22 | 176 | 4.56e-67 | 219 |
Msa0655690 | MtrunA17_Chr2g0324991 | 65.414 | 133 | 44 | 2 | 38 | 170 | 3 | 133 | 9.60e-61 | 194 |
Msa0655690 | MtrunA17_Chr2g0320341 | 33.974 | 156 | 89 | 4 | 36 | 178 | 224 | 378 | 6.84e-21 | 94.0 |
Msa0655690 | MtrunA17_Chr3g0123941 | 37.107 | 159 | 80 | 6 | 33 | 178 | 114 | 265 | 3.22e-19 | 88.2 |
Msa0655690 | MtrunA17_Chr8g0382121 | 35.714 | 154 | 88 | 5 | 35 | 178 | 104 | 256 | 2.49e-18 | 85.1 |
Msa0655690 | MtrunA17_Chr1g0200421 | 32.215 | 149 | 89 | 5 | 41 | 178 | 236 | 383 | 6.38e-17 | 82.8 |
Msa0655690 | MtrunA17_Chr4g0057391 | 34.884 | 86 | 56 | 0 | 311 | 396 | 58 | 143 | 7.49e-15 | 71.6 |
Msa0655690 | MtrunA17_Chr1g0173841 | 29.891 | 184 | 106 | 7 | 3 | 178 | 187 | 355 | 2.74e-13 | 70.9 |
Msa0655690 | MtrunA17_Chr8g0352011 | 32.394 | 142 | 85 | 5 | 48 | 181 | 171 | 309 | 3.01e-13 | 70.5 |
Msa0655690 | MtrunA17_Chr7g0258011 | 30.986 | 142 | 87 | 5 | 48 | 181 | 181 | 319 | 6.93e-13 | 69.3 |
Msa0655690 | MtrunA17_Chr4g0026521 | 30.935 | 139 | 85 | 5 | 48 | 178 | 123 | 258 | 7.99e-12 | 65.9 |
Msa0655690 | MtrunA17_Chr1g0198651 | 27.374 | 179 | 114 | 6 | 15 | 181 | 74 | 248 | 3.06e-11 | 63.9 |
Msa0655690 | MtrunA17_Chr2g0321291 | 30.216 | 139 | 86 | 5 | 48 | 178 | 138 | 273 | 3.24e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0655690 | AT2G01940.1 | 57.482 | 421 | 151 | 9 | 17 | 421 | 34 | 442 | 2.77e-164 | 469 |
Msa0655690 | AT2G01940.3 | 58.111 | 413 | 142 | 11 | 27 | 421 | 44 | 443 | 8.40e-159 | 455 |
Msa0655690 | AT1G68130.1 | 56.863 | 408 | 137 | 9 | 21 | 419 | 34 | 411 | 2.79e-149 | 430 |
Msa0655690 | AT1G25250.3 | 53.846 | 429 | 137 | 10 | 3 | 421 | 8 | 385 | 1.94e-145 | 419 |
Msa0655690 | AT1G25250.1 | 54.315 | 394 | 120 | 9 | 37 | 421 | 20 | 362 | 8.70e-135 | 391 |
Msa0655690 | AT2G01940.2 | 54.247 | 365 | 139 | 9 | 73 | 421 | 1 | 353 | 7.57e-127 | 371 |
Msa0655690 | AT1G68130.2 | 52.113 | 355 | 132 | 8 | 73 | 419 | 1 | 325 | 1.31e-112 | 333 |
Msa0655690 | AT1G25250.2 | 50.000 | 358 | 119 | 9 | 73 | 421 | 1 | 307 | 5.08e-106 | 316 |
Msa0655690 | AT3G50700.1 | 56.757 | 185 | 74 | 3 | 2 | 182 | 5 | 187 | 7.57e-72 | 233 |
Msa0655690 | AT5G66730.1 | 57.377 | 183 | 74 | 3 | 2 | 182 | 5 | 185 | 8.35e-71 | 231 |
Msa0655690 | AT4G02670.2 | 49.569 | 232 | 95 | 4 | 27 | 243 | 55 | 279 | 3.26e-70 | 227 |
Msa0655690 | AT4G02670.1 | 49.569 | 232 | 95 | 4 | 27 | 243 | 53 | 277 | 3.82e-70 | 227 |
Msa0655690 | AT3G45260.2 | 55.747 | 174 | 76 | 1 | 27 | 200 | 39 | 211 | 1.15e-69 | 227 |
Msa0655690 | AT3G45260.1 | 55.747 | 174 | 76 | 1 | 27 | 200 | 39 | 211 | 1.15e-69 | 227 |
Msa0655690 | AT1G55110.3 | 61.538 | 156 | 59 | 1 | 27 | 182 | 63 | 217 | 1.30e-69 | 227 |
Msa0655690 | AT1G55110.1 | 61.538 | 156 | 59 | 1 | 27 | 182 | 63 | 217 | 1.30e-69 | 227 |
Msa0655690 | AT1G55110.2 | 61.538 | 156 | 59 | 1 | 27 | 182 | 63 | 217 | 1.30e-69 | 227 |
Msa0655690 | AT3G13810.6 | 62.821 | 156 | 57 | 1 | 27 | 182 | 51 | 205 | 2.74e-69 | 228 |
Msa0655690 | AT5G60470.2 | 54.098 | 183 | 83 | 1 | 27 | 209 | 44 | 225 | 3.58e-69 | 226 |
Msa0655690 | AT3G13810.4 | 62.821 | 156 | 57 | 1 | 27 | 182 | 70 | 224 | 3.91e-69 | 228 |
Msa0655690 | AT3G13810.1 | 62.821 | 156 | 57 | 1 | 27 | 182 | 70 | 224 | 3.91e-69 | 228 |
Msa0655690 | AT3G13810.5 | 62.821 | 156 | 57 | 1 | 27 | 182 | 65 | 219 | 4.03e-69 | 227 |
Msa0655690 | AT5G60470.3 | 54.098 | 183 | 83 | 1 | 27 | 209 | 40 | 221 | 4.35e-69 | 226 |
Msa0655690 | AT2G02080.1 | 55.307 | 179 | 75 | 3 | 27 | 202 | 54 | 230 | 4.71e-69 | 227 |
Msa0655690 | AT2G02080.4 | 55.307 | 179 | 75 | 3 | 27 | 202 | 54 | 230 | 4.71e-69 | 227 |
Msa0655690 | AT2G02080.5 | 55.307 | 179 | 75 | 3 | 27 | 202 | 54 | 230 | 4.71e-69 | 227 |
Msa0655690 | AT2G02080.3 | 55.307 | 179 | 75 | 3 | 27 | 202 | 54 | 230 | 4.71e-69 | 227 |
Msa0655690 | AT5G03150.1 | 61.538 | 156 | 59 | 1 | 27 | 182 | 53 | 207 | 6.02e-69 | 227 |
Msa0655690 | AT1G14580.1 | 58.974 | 156 | 62 | 2 | 27 | 182 | 53 | 206 | 2.86e-68 | 224 |
Msa0655690 | AT1G14580.2 | 58.974 | 156 | 62 | 2 | 27 | 182 | 53 | 206 | 2.86e-68 | 224 |
Msa0655690 | AT1G03840.1 | 63.462 | 156 | 55 | 2 | 27 | 182 | 41 | 194 | 2.93e-68 | 225 |
Msa0655690 | AT1G14580.3 | 58.974 | 156 | 62 | 2 | 27 | 182 | 67 | 220 | 5.03e-68 | 224 |
Msa0655690 | AT2G02070.2 | 61.538 | 156 | 58 | 2 | 27 | 182 | 52 | 205 | 1.23e-67 | 226 |
Msa0655690 | AT2G02070.1 | 61.538 | 156 | 58 | 2 | 27 | 182 | 52 | 205 | 1.23e-67 | 226 |
Msa0655690 | AT5G44160.1 | 49.302 | 215 | 97 | 5 | 27 | 236 | 37 | 244 | 2.64e-66 | 219 |
Msa0655690 | AT3G13810.3 | 64.138 | 145 | 51 | 1 | 38 | 182 | 68 | 211 | 7.27e-65 | 216 |
Msa0655690 | AT5G60470.1 | 54.070 | 172 | 78 | 1 | 38 | 209 | 46 | 216 | 8.90e-65 | 214 |
Msa0655690 | AT3G13810.2 | 64.138 | 145 | 51 | 1 | 38 | 182 | 82 | 225 | 1.05e-64 | 216 |
Msa0655690 | AT1G03840.2 | 62.179 | 156 | 55 | 3 | 27 | 182 | 41 | 192 | 1.10e-64 | 216 |
Msa0655690 | AT5G44160.2 | 49.268 | 205 | 92 | 5 | 37 | 236 | 8 | 205 | 5.87e-63 | 209 |
Msa0655690 | AT2G02080.6 | 53.205 | 156 | 68 | 3 | 51 | 203 | 1 | 154 | 2.42e-56 | 192 |
Msa0655690 | AT2G02080.2 | 53.205 | 156 | 68 | 3 | 51 | 203 | 1 | 154 | 2.42e-56 | 192 |
Msa0655690 | AT5G22890.1 | 31.138 | 167 | 101 | 5 | 25 | 178 | 186 | 351 | 6.81e-17 | 82.4 |
Msa0655690 | AT1G34370.3 | 29.231 | 195 | 119 | 7 | 36 | 216 | 14 | 203 | 1.11e-16 | 80.5 |
Msa0655690 | AT1G34370.2 | 29.231 | 195 | 119 | 7 | 36 | 216 | 224 | 413 | 1.72e-16 | 81.6 |
Msa0655690 | AT1G34370.1 | 29.231 | 195 | 119 | 7 | 36 | 216 | 224 | 413 | 1.72e-16 | 81.6 |
Msa0655690 | AT3G48550.1 | 31.034 | 174 | 87 | 6 | 226 | 393 | 11 | 157 | 1.50e-15 | 74.3 |
Msa0655690 | AT3G57670.1 | 30.986 | 142 | 87 | 5 | 48 | 181 | 209 | 347 | 4.25e-12 | 67.8 |
Find 96 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTATGCATTTGAAGATTC+TGG | 0.162069 | 4_3:-64543832 | None:intergenic |
AACAGGTTCTCTGAATTTAT+TGG | 0.193173 | 4_3:+64543487 | Msa0655690:five_prime_UTR |
GTTCATATTCTTTATTAATA+TGG | 0.201980 | 4_3:+64546343 | Msa0655690:three_prime_UTR |
GATGCAGTGTTTAGCACTTT+AGG | 0.210187 | 4_3:+64546373 | Msa0655690:three_prime_UTR |
CAGTTTCAATCTTCAACTTC+TGG | 0.249687 | 4_3:+64546101 | Msa0655690:CDS |
AGGAATGAAGAGAGAGAAAA+AGG | 0.277026 | 4_3:-64543348 | None:intergenic |
ATGCAGTGTTTAGCACTTTA+GGG | 0.291900 | 4_3:+64546374 | Msa0655690:three_prime_UTR |
AATGGTTTATCAGGTGGTTT+TGG | 0.294809 | 4_3:-64545618 | None:intergenic |
TTGAGTTTGAAAATGCTAAA+AGG | 0.314430 | 4_3:+64545967 | Msa0655690:CDS |
AGAAGAAACATCCATTGTTA+TGG | 0.316252 | 4_3:+64546133 | Msa0655690:CDS |
TCTGATTCTAACAAAGTCTT+TGG | 0.339052 | 4_3:-64543767 | None:intergenic |
CTAAAATTTGCCTCACTAGA+TGG | 0.342793 | 4_3:-64545561 | None:intergenic |
GCACTGGTAATCCTTGTAAT+GGG | 0.366655 | 4_3:-64545593 | None:intergenic |
TTAATTTACAATAAGTCATA+TGG | 0.369490 | 4_3:+64546247 | Msa0655690:three_prime_UTR |
GGTGCTGATAATGGTTTATC+AGG | 0.373734 | 4_3:-64545627 | None:intergenic |
GAAGATAAGTAACACTGTTA+TGG | 0.384215 | 4_3:+64546052 | Msa0655690:CDS |
TGATGCAAACAACTTGGTTC+TGG | 0.390697 | 4_3:-64543929 | None:intergenic |
GAAGAAACATCCATTGTTAT+GGG | 0.391163 | 4_3:+64546134 | Msa0655690:CDS |
AGAAAGATGATAGGTGATAA+TGG | 0.391803 | 4_3:-64543391 | None:intergenic |
ACACACTTGAAACTTTCAAT+AGG | 0.397442 | 4_3:+64545786 | Msa0655690:CDS |
ATTGTTGTTGCTTGGAACTC+TGG | 0.397896 | 4_3:-64545498 | None:intergenic |
CAGGCTGCATTGTTGTTGCT+TGG | 0.402771 | 4_3:-64545506 | None:intergenic |
AACAAGGTAGGTGCTGATAA+TGG | 0.405416 | 4_3:-64545636 | None:intergenic |
GAAACTGTTGCTTACAAGCT+TGG | 0.418931 | 4_3:-64546085 | None:intergenic |
AATTAAAGATGATATATTGC+TGG | 0.423127 | 4_3:+64546219 | Msa0655690:three_prime_UTR |
TGTATTACTTGAAGAAGAAA+AGG | 0.432708 | 4_3:+64546321 | Msa0655690:three_prime_UTR |
TCTGGTCTCTTTGAAACCCT+TGG | 0.440797 | 4_3:-64543814 | None:intergenic |
ATGTTACCTGGTGTGCCTGC+TGG | 0.441395 | 4_3:-64543644 | None:intergenic |
AGAGACACAACTTCAGCATC+TGG | 0.455957 | 4_3:-64543740 | None:intergenic |
AGAGTTGAAGTTCTAAGTTA+TGG | 0.456212 | 4_3:-64545704 | None:intergenic |
AGCACTGGTAATCCTTGTAA+TGG | 0.468962 | 4_3:-64545594 | None:intergenic |
ACAATGGATGTTTCTTCTGA+TGG | 0.469771 | 4_3:-64546128 | None:intergenic |
TTCCCCTTCTGTGGTGGCTG+AGG | 0.471434 | 4_3:-64546165 | None:intergenic |
GTACTGTACCTCACTGCAAC+AGG | 0.481858 | 4_3:+64543470 | Msa0655690:five_prime_UTR |
AGTATATCAGCCCCATTACA+AGG | 0.490202 | 4_3:+64545582 | Msa0655690:CDS |
TTCTGCTTCCCCTTCTGTGG+TGG | 0.491783 | 4_3:-64546171 | None:intergenic |
TTGTTGCTTGGAACTCTGGT+TGG | 0.493027 | 4_3:-64545494 | None:intergenic |
TTCGTTGAAAGAAAGATGAT+AGG | 0.498716 | 4_3:-64543400 | None:intergenic |
ACATAGTAATCATAAACAAT+GGG | 0.505280 | 4_3:+64544009 | Msa0655690:CDS |
GTTTGTGAGATCTGTAACCA+AGG | 0.507755 | 4_3:+64543797 | Msa0655690:CDS |
TACTAGTGAGGAGCTAAAGT+TGG | 0.509569 | 4_3:+64545875 | Msa0655690:CDS |
GTGAAGTTTGTAATAGTGAG+TGG | 0.510773 | 4_3:-64543436 | None:intergenic |
CAAAGAAAAGCTCGTGGCAA+AGG | 0.515637 | 4_3:+64543261 | Msa0655690:five_prime_UTR |
AGAAGACCAGCAGGCACACC+AGG | 0.525697 | 4_3:+64543638 | Msa0655690:CDS |
AAACAAGCACAAGATGAACT+TGG | 0.527243 | 4_3:+64545996 | Msa0655690:CDS |
AAAGTTGGCAATGACAGAAA+AGG | 0.528627 | 4_3:+64545890 | Msa0655690:CDS |
ACTTGAGGGTTTATAGAGGA+AGG | 0.528633 | 4_3:-64545729 | None:intergenic |
TCATTCTGCTTCCCCTTCTG+TGG | 0.531823 | 4_3:-64546174 | None:intergenic |
AACATAGTAATCATAAACAA+TGG | 0.531879 | 4_3:+64544008 | Msa0655690:CDS |
ATTAACTGTGTTATCTAACA+TGG | 0.533403 | 4_3:-64543549 | None:intergenic |
TTTGAAAGAGTTTACTAGTG+AGG | 0.537749 | 4_3:+64545863 | Msa0655690:CDS |
CATGATCCATGTCATGCACT+AGG | 0.544901 | 4_3:+64543950 | Msa0655690:CDS |
TTCTACTTGAGGGTTTATAG+AGG | 0.552798 | 4_3:-64545733 | None:intergenic |
TTTGTGAGATCTGTAACCAA+GGG | 0.553552 | 4_3:+64543798 | Msa0655690:CDS |
GCTGATAATGGTTTATCAGG+TGG | 0.558635 | 4_3:-64545624 | None:intergenic |
GTTGAAGTTCTAAGTTATGG+TGG | 0.560774 | 4_3:-64545701 | None:intergenic |
ATGTCCTCAGCCACCACAGA+AGG | 0.565952 | 4_3:+64546161 | Msa0655690:CDS |
GGATCATGATGCAAACAACT+TGG | 0.569323 | 4_3:-64543935 | None:intergenic |
AGAGGACATTCGTGTGATTG+TGG | 0.573870 | 4_3:+64544103 | Msa0655690:CDS |
CATGCACTAGGTGACCTTGT+TGG | 0.575089 | 4_3:+64543962 | Msa0655690:CDS |
GTTATGGTGGTGATGAGAAG+TGG | 0.575098 | 4_3:-64545688 | None:intergenic |
ACAATCACACGAATGTCCTC+TGG | 0.575624 | 4_3:-64544101 | None:intergenic |
TGATAATGCAAAAGCAGTAG+TGG | 0.577782 | 4_3:-64543585 | None:intergenic |
GTTATCTAACATGGGTGGAG+TGG | 0.580079 | 4_3:-64543540 | None:intergenic |
GCAGTGAGGTACAGTACAGC+TGG | 0.584238 | 4_3:-64543464 | None:intergenic |
TGTCCTCAGCCACCACAGAA+GGG | 0.586753 | 4_3:+64546162 | Msa0655690:CDS |
GTTTGTGACAAATGCAACAA+AGG | 0.587309 | 4_3:+64544031 | Msa0655690:CDS |
GAAGAAGACACAAAGTGCCA+TGG | 0.587753 | 4_3:+64543852 | Msa0655690:CDS |
TCTGAATTAGTTAACAAGGT+AGG | 0.590831 | 4_3:-64545648 | None:intergenic |
TGCAGTGTTTAGCACTTTAG+GGG | 0.591983 | 4_3:+64546375 | Msa0655690:three_prime_UTR |
AGCAGTAGTGGCATCAGAAG+AGG | 0.593577 | 4_3:-64543573 | None:intergenic |
TGAAGTTTGTAATAGTGAGT+GGG | 0.595307 | 4_3:-64543435 | None:intergenic |
ATAATGAGTCAGAGAAACAA+AGG | 0.608502 | 4_3:+64545811 | Msa0655690:CDS |
CAAACTTGCTAGTTCCAATG+TGG | 0.610019 | 4_3:-64545844 | None:intergenic |
AAGGAATGATGTATCCACAT+TGG | 0.613625 | 4_3:+64545830 | Msa0655690:CDS |
GTCCTCAGCCACCACAGAAG+GGG | 0.615788 | 4_3:+64546163 | Msa0655690:CDS |
TTAACTGTGTTATCTAACAT+GGG | 0.627719 | 4_3:-64543548 | None:intergenic |
CAAGACGCATGCACAATCAG+AGG | 0.629083 | 4_3:+64545465 | Msa0655690:CDS |
ATCAAAACATGTGGTACCAG+AGG | 0.630022 | 4_3:+64544085 | Msa0655690:CDS |
TGTATCTGAATTAGTTAACA+AGG | 0.634479 | 4_3:-64545652 | None:intergenic |
GCAGTTCTAGAAGAACATGC+AGG | 0.635627 | 4_3:-64545525 | None:intergenic |
CACTGGTAATCCTTGTAATG+GGG | 0.639858 | 4_3:-64545592 | None:intergenic |
AGGTACAGTACAGCTGGTGG+TGG | 0.644840 | 4_3:-64543458 | None:intergenic |
TGGTGGTGATGAGAAGTGGA+AGG | 0.646826 | 4_3:-64545684 | None:intergenic |
TCTCTGACAACTATTGAACA+AGG | 0.655338 | 4_3:+64546407 | Msa0655690:three_prime_UTR |
AAAGCACATATCAAAACATG+TGG | 0.657146 | 4_3:+64544076 | Msa0655690:CDS |
AAGCACAAGTCCATCTAGTG+AGG | 0.660327 | 4_3:+64545551 | Msa0655690:CDS |
AATGTTTCTTGATTCCAACA+AGG | 0.660532 | 4_3:-64543976 | None:intergenic |
AGGTCACCTAGTGCATGACA+TGG | 0.667882 | 4_3:-64543956 | None:intergenic |
GGACATGTAACCCATAACAA+TGG | 0.669538 | 4_3:-64546144 | None:intergenic |
ACTGTGTTATCTAACATGGG+TGG | 0.682813 | 4_3:-64543545 | None:intergenic |
GCAAAGCAAAGAAAAGCTCG+TGG | 0.689460 | 4_3:+64543255 | Msa0655690:five_prime_UTR |
TTTGCATTATCAGAAAATGG+GGG | 0.689769 | 4_3:+64543596 | Msa0655690:CDS |
TTGAAAAGAGAAACAACACA+AGG | 0.699162 | 4_3:+64543881 | Msa0655690:CDS |
TCAGAGAACCTGTTGCAGTG+AGG | 0.725813 | 4_3:-64543478 | None:intergenic |
GTGAGGTACAGTACAGCTGG+TGG | 0.778381 | 4_3:-64543461 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAAAATACTAATATTAATT+TGG | - | chr4_3:64544357-64544376 | None:intergenic | 10.0% |
!!! | ATAATAAAATAGTACTATTT+TGG | + | chr4_3:64544551-64544570 | Msa0655690:intron | 10.0% |
!! | ATCTAGTTATTAATATATAT+AGG | + | chr4_3:64545043-64545062 | Msa0655690:intron | 10.0% |
!!! | TTTTTTATAACCTTTTTTTG+TGG | + | chr4_3:64543705-64543724 | Msa0655690:intron | 15.0% |
!!! | TTTTTATAACCTTTTTTTGT+GGG | + | chr4_3:64543706-64543725 | Msa0655690:intron | 15.0% |
!!! | CTCTCAAATATAAAATTTTA+GGG | - | chr4_3:64544446-64544465 | None:intergenic | 15.0% |
!!! | ACTCTCAAATATAAAATTTT+AGG | - | chr4_3:64544447-64544466 | None:intergenic | 15.0% |
!! | TAGCTAATATTATAAGTTTA+TGG | + | chr4_3:64544738-64544757 | Msa0655690:intron | 15.0% |
!! | ATTGATAAAAAAATGTAGAT+AGG | - | chr4_3:64544776-64544795 | None:intergenic | 15.0% |
!! | AATTAATTAATCAAAGATCT+GGG | - | chr4_3:64544927-64544946 | None:intergenic | 15.0% |
!! | AAATTAATTAATCAAAGATC+TGG | - | chr4_3:64544928-64544947 | None:intergenic | 15.0% |
!! | TTTCATCTTAAAAAATAACA+TGG | - | chr4_3:64544975-64544994 | None:intergenic | 15.0% |
!! | TTAATTTACAATAAGTCATA+TGG | + | chr4_3:64546247-64546266 | Msa0655690:three_prime_UTR | 15.0% |
!! | AAAGAAAGAAAAAAAGAATA+GGG | - | chr4_3:64546283-64546302 | None:intergenic | 15.0% |
!! | AAAAGAAAGAAAAAAAGAAT+AGG | - | chr4_3:64546284-64546303 | None:intergenic | 15.0% |
!! | GTTCATATTCTTTATTAATA+TGG | + | chr4_3:64546343-64546362 | Msa0655690:three_prime_UTR | 15.0% |
!!! | TATGAAATCAGCTTTTTTTA+AGG | - | chr4_3:64543317-64543336 | None:intergenic | 20.0% |
!! | AACATAGTAATCATAAACAA+TGG | + | chr4_3:64544008-64544027 | Msa0655690:CDS | 20.0% |
!! | ACATAGTAATCATAAACAAT+GGG | + | chr4_3:64544009-64544028 | Msa0655690:CDS | 20.0% |
!! | AATTAAATTCTCATCTTCTT+AGG | + | chr4_3:64544506-64544525 | Msa0655690:intron | 20.0% |
!!! | TTTTATCAATAAACCAAACA+AGG | + | chr4_3:64544786-64544805 | Msa0655690:intron | 20.0% |
!! | TACTAAAATGAATCATATGT+AGG | + | chr4_3:64544809-64544828 | Msa0655690:intron | 20.0% |
!!! | GTCAAATTATATTTTCATAC+AGG | + | chr4_3:64545208-64545227 | Msa0655690:intron | 20.0% |
!! | AGTCAATAACCATATATTAT+AGG | - | chr4_3:64545397-64545416 | None:intergenic | 20.0% |
!! | AATTAAAGATGATATATTGC+TGG | + | chr4_3:64546219-64546238 | Msa0655690:three_prime_UTR | 20.0% |
! | TTAACTGTGTTATCTAACAT+GGG | - | chr4_3:64543551-64543570 | None:intergenic | 25.0% |
! | ATTAACTGTGTTATCTAACA+TGG | - | chr4_3:64543552-64543571 | None:intergenic | 25.0% |
!! | CTTTTGCATTATCAGAAAAT+GGG | + | chr4_3:64543594-64543613 | Msa0655690:CDS | 25.0% |
!! | TTTTGCATTATCAGAAAATG+GGG | + | chr4_3:64543595-64543614 | Msa0655690:CDS | 25.0% |
! | TATTTGTAAGATATGTTACC+TGG | - | chr4_3:64543659-64543678 | None:intergenic | 25.0% |
! | TACAATAAAGATGGAAAACT+TGG | - | chr4_3:64544197-64544216 | None:intergenic | 25.0% |
! | GAAACTATCTACAATAAAGA+TGG | - | chr4_3:64544206-64544225 | None:intergenic | 25.0% |
!! | TTTTCTCTCTCTTTCTTTTT+CGG | + | chr4_3:64544234-64544253 | Msa0655690:intron | 25.0% |
! | TGAGAATTTAATTGCAAAGA+GGG | - | chr4_3:64544499-64544518 | None:intergenic | 25.0% |
! | ATGAGAATTTAATTGCAAAG+AGG | - | chr4_3:64544500-64544519 | None:intergenic | 25.0% |
!!! | ATTCATTTTAGTACCTTGTT+TGG | - | chr4_3:64544802-64544821 | None:intergenic | 25.0% |
! | TAAGACAGAATGATGAAATA+GGG | - | chr4_3:64544864-64544883 | None:intergenic | 25.0% |
! | ATAAGACAGAATGATGAAAT+AGG | - | chr4_3:64544865-64544884 | None:intergenic | 25.0% |
! | TAAGATGAAATAGCTATAAC+AGG | + | chr4_3:64544985-64545004 | Msa0655690:intron | 25.0% |
! | TAATATATATAGGCCTTGAT+TGG | + | chr4_3:64545053-64545072 | Msa0655690:intron | 25.0% |
! | TGTATCTGAATTAGTTAACA+AGG | - | chr4_3:64545655-64545674 | None:intergenic | 25.0% |
!!! | AATTTGGTTTTTCTACTTGA+GGG | - | chr4_3:64545746-64545765 | None:intergenic | 25.0% |
!!! | TAGTTTTGATCGTTTGAATT+TGG | - | chr4_3:64545762-64545781 | None:intergenic | 25.0% |
! | TTGAGTTTGAAAATGCTAAA+AGG | + | chr4_3:64545967-64545986 | Msa0655690:CDS | 25.0% |
! | TGTATTACTTGAAGAAGAAA+AGG | + | chr4_3:64546321-64546340 | Msa0655690:three_prime_UTR | 25.0% |
! | GATAATGGCAAAAAAACAGA+AGG | - | chr4_3:64543379-64543398 | None:intergenic | 30.0% |
AGAAAGATGATAGGTGATAA+TGG | - | chr4_3:64543394-64543413 | None:intergenic | 30.0% | |
TTCGTTGAAAGAAAGATGAT+AGG | - | chr4_3:64543403-64543422 | None:intergenic | 30.0% | |
TGAAGTTTGTAATAGTGAGT+GGG | - | chr4_3:64543438-64543457 | None:intergenic | 30.0% | |
AACAGGTTCTCTGAATTTAT+TGG | + | chr4_3:64543487-64543506 | Msa0655690:five_prime_UTR | 30.0% | |
! | GCTTTTGCATTATCAGAAAA+TGG | + | chr4_3:64543593-64543612 | Msa0655690:CDS | 30.0% |
TTTGCATTATCAGAAAATGG+GGG | + | chr4_3:64543596-64543615 | Msa0655690:CDS | 30.0% | |
TCTGATTCTAACAAAGTCTT+TGG | - | chr4_3:64543770-64543789 | None:intergenic | 30.0% | |
TTCTATGCATTTGAAGATTC+TGG | - | chr4_3:64543835-64543854 | None:intergenic | 30.0% | |
! | TCTCTTTTCAACAATTTCCA+TGG | - | chr4_3:64543872-64543891 | None:intergenic | 30.0% |
TTGAAAAGAGAAACAACACA+AGG | + | chr4_3:64543881-64543900 | Msa0655690:CDS | 30.0% | |
AATGTTTCTTGATTCCAACA+AGG | - | chr4_3:64543979-64543998 | None:intergenic | 30.0% | |
AAAGCACATATCAAAACATG+TGG | + | chr4_3:64544076-64544095 | Msa0655690:CDS | 30.0% | |
CAATATGAGAAAGTGAAAGA+TGG | - | chr4_3:64544165-64544184 | None:intergenic | 30.0% | |
GTTCATCATTCATCAAATTC+AGG | + | chr4_3:64544293-64544312 | Msa0655690:intron | 30.0% | |
! | CAATTGACTGTGTTTGTTAA+CGG | + | chr4_3:64544328-64544347 | Msa0655690:intron | 30.0% |
TAGTAGCTACTTAATGATAC+TGG | - | chr4_3:64544716-64544735 | None:intergenic | 30.0% | |
!! | GAAGAGTTAATTTGTACTAG+TGG | + | chr4_3:64544835-64544854 | Msa0655690:intron | 30.0% |
ACAAACTGTTTATCCAATCA+AGG | - | chr4_3:64545069-64545088 | None:intergenic | 30.0% | |
! | TTTTTACATGCTCTCTCAAA+CGG | + | chr4_3:64545318-64545337 | Msa0655690:intron | 30.0% |
CCATATATTATAGGTCTGTT+TGG | - | chr4_3:64545388-64545407 | None:intergenic | 30.0% | |
CCAAACAGACCTATAATATA+TGG | + | chr4_3:64545385-64545404 | Msa0655690:intron | 30.0% | |
TTACATTTGCCCTTTGATTA+GGG | + | chr4_3:64545422-64545441 | Msa0655690:intron | 30.0% | |
TCTGAATTAGTTAACAAGGT+AGG | - | chr4_3:64545651-64545670 | None:intergenic | 30.0% | |
!! | AGAGTTGAAGTTCTAAGTTA+TGG | - | chr4_3:64545707-64545726 | None:intergenic | 30.0% |
!!! | GAATTTGGTTTTTCTACTTG+AGG | - | chr4_3:64545747-64545766 | None:intergenic | 30.0% |
ACACACTTGAAACTTTCAAT+AGG | + | chr4_3:64545786-64545805 | Msa0655690:CDS | 30.0% | |
ATAATGAGTCAGAGAAACAA+AGG | + | chr4_3:64545811-64545830 | Msa0655690:CDS | 30.0% | |
TTTGAAAGAGTTTACTAGTG+AGG | + | chr4_3:64545863-64545882 | Msa0655690:CDS | 30.0% | |
GAAGATAAGTAACACTGTTA+TGG | + | chr4_3:64546052-64546071 | Msa0655690:CDS | 30.0% | |
AGAAGAAACATCCATTGTTA+TGG | + | chr4_3:64546133-64546152 | Msa0655690:CDS | 30.0% | |
GAAGAAACATCCATTGTTAT+GGG | + | chr4_3:64546134-64546153 | Msa0655690:CDS | 30.0% | |
AGGAATGAAGAGAGAGAAAA+AGG | - | chr4_3:64543351-64543370 | None:intergenic | 35.0% | |
CAAAAAAACAGAAGGAGGAA+AGG | - | chr4_3:64543371-64543390 | None:intergenic | 35.0% | |
AATGGCAAAAAAACAGAAGG+AGG | - | chr4_3:64543376-64543395 | None:intergenic | 35.0% | |
GTGAAGTTTGTAATAGTGAG+TGG | - | chr4_3:64543439-64543458 | None:intergenic | 35.0% | |
! | TGATAATGCAAAAGCAGTAG+TGG | - | chr4_3:64543588-64543607 | None:intergenic | 35.0% |
AAAAGAAAAAGAAGACCAGC+AGG | + | chr4_3:64543629-64543648 | Msa0655690:CDS | 35.0% | |
CTAAACACACCCACAAAAAA+AGG | - | chr4_3:64543718-64543737 | None:intergenic | 35.0% | |
TTTGTGAGATCTGTAACCAA+GGG | + | chr4_3:64543798-64543817 | Msa0655690:CDS | 35.0% | |
GTTTGTGACAAATGCAACAA+AGG | + | chr4_3:64544031-64544050 | Msa0655690:CDS | 35.0% | |
!!! | ATTTTAGGGTTTGACTTCCT+AGG | - | chr4_3:64544432-64544451 | None:intergenic | 35.0% |
TTAATGATACTGGCACTTAC+AGG | - | chr4_3:64544706-64544725 | None:intergenic | 35.0% | |
GTTACATTTGCCCTTTGATT+AGG | + | chr4_3:64545421-64545440 | Msa0655690:intron | 35.0% | |
CTAAAATTTGCCTCACTAGA+TGG | - | chr4_3:64545564-64545583 | None:intergenic | 35.0% | |
! | AATGGTTTATCAGGTGGTTT+TGG | - | chr4_3:64545621-64545640 | None:intergenic | 35.0% |
!! | GTTGAAGTTCTAAGTTATGG+TGG | - | chr4_3:64545704-64545723 | None:intergenic | 35.0% |
TTCTACTTGAGGGTTTATAG+AGG | - | chr4_3:64545736-64545755 | None:intergenic | 35.0% | |
AAGGAATGATGTATCCACAT+TGG | + | chr4_3:64545830-64545849 | Msa0655690:CDS | 35.0% | |
AAAGTTGGCAATGACAGAAA+AGG | + | chr4_3:64545890-64545909 | Msa0655690:CDS | 35.0% | |
AAACAAGCACAAGATGAACT+TGG | + | chr4_3:64545996-64546015 | Msa0655690:CDS | 35.0% | |
CAGTTTCAATCTTCAACTTC+TGG | + | chr4_3:64546101-64546120 | Msa0655690:CDS | 35.0% | |
ACAATGGATGTTTCTTCTGA+TGG | - | chr4_3:64546131-64546150 | None:intergenic | 35.0% | |
ATGCAGTGTTTAGCACTTTA+GGG | + | chr4_3:64546374-64546393 | Msa0655690:three_prime_UTR | 35.0% | |
TCTCTGACAACTATTGAACA+AGG | + | chr4_3:64546407-64546426 | Msa0655690:three_prime_UTR | 35.0% | |
ACTGTGTTATCTAACATGGG+TGG | - | chr4_3:64543548-64543567 | None:intergenic | 40.0% | |
GTTTGTGAGATCTGTAACCA+AGG | + | chr4_3:64543797-64543816 | Msa0655690:CDS | 40.0% | |
TGATGCAAACAACTTGGTTC+TGG | - | chr4_3:64543932-64543951 | None:intergenic | 40.0% | |
GGATCATGATGCAAACAACT+TGG | - | chr4_3:64543938-64543957 | None:intergenic | 40.0% | |
ATCAAAACATGTGGTACCAG+AGG | + | chr4_3:64544085-64544104 | Msa0655690:CDS | 40.0% | |
AAGAAAGCAGAACACAAACC+TGG | - | chr4_3:64544140-64544159 | None:intergenic | 40.0% | |
AAAGCCTGCATAATGATGAG+GGG | - | chr4_3:64544675-64544694 | None:intergenic | 40.0% | |
CAAAGCCTGCATAATGATGA+GGG | - | chr4_3:64544676-64544695 | None:intergenic | 40.0% | |
CAAACGGTTCAACAGTTCTT+AGG | + | chr4_3:64545334-64545353 | Msa0655690:intron | 40.0% | |
ACAGTTCTTAGGACTGTAGT+AGG | + | chr4_3:64545345-64545364 | Msa0655690:intron | 40.0% | |
AACTCTCCACCCTAATCAAA+GGG | - | chr4_3:64545434-64545453 | None:intergenic | 40.0% | |
AAACTCTCCACCCTAATCAA+AGG | - | chr4_3:64545435-64545454 | None:intergenic | 40.0% | |
! | ATTGTTGTTGCTTGGAACTC+TGG | - | chr4_3:64545501-64545520 | None:intergenic | 40.0% |
AGTATATCAGCCCCATTACA+AGG | + | chr4_3:64545582-64545601 | Msa0655690:CDS | 40.0% | |
CACTGGTAATCCTTGTAATG+GGG | - | chr4_3:64545595-64545614 | None:intergenic | 40.0% | |
! | GCACTGGTAATCCTTGTAAT+GGG | - | chr4_3:64545596-64545615 | None:intergenic | 40.0% |
!! | AGCACTGGTAATCCTTGTAA+TGG | - | chr4_3:64545597-64545616 | None:intergenic | 40.0% |
!! | GCTGATAATGGTTTATCAGG+TGG | - | chr4_3:64545627-64545646 | None:intergenic | 40.0% |
!! | GGTGCTGATAATGGTTTATC+AGG | - | chr4_3:64545630-64545649 | None:intergenic | 40.0% |
!! | AACAAGGTAGGTGCTGATAA+TGG | - | chr4_3:64545639-64545658 | None:intergenic | 40.0% |
ACTTGAGGGTTTATAGAGGA+AGG | - | chr4_3:64545732-64545751 | None:intergenic | 40.0% | |
!! | CAAACTTGCTAGTTCCAATG+TGG | - | chr4_3:64545847-64545866 | None:intergenic | 40.0% |
TACTAGTGAGGAGCTAAAGT+TGG | + | chr4_3:64545875-64545894 | Msa0655690:CDS | 40.0% | |
! | GAAACTGTTGCTTACAAGCT+TGG | - | chr4_3:64546088-64546107 | None:intergenic | 40.0% |
GGACATGTAACCCATAACAA+TGG | - | chr4_3:64546147-64546166 | None:intergenic | 40.0% | |
GATGCAGTGTTTAGCACTTT+AGG | + | chr4_3:64546373-64546392 | Msa0655690:three_prime_UTR | 40.0% | |
TGCAGTGTTTAGCACTTTAG+GGG | + | chr4_3:64546375-64546394 | Msa0655690:three_prime_UTR | 40.0% | |
GCAAAGCAAAGAAAAGCTCG+TGG | + | chr4_3:64543255-64543274 | Msa0655690:five_prime_UTR | 45.0% | |
CAAAGAAAAGCTCGTGGCAA+AGG | + | chr4_3:64543261-64543280 | Msa0655690:five_prime_UTR | 45.0% | |
GTTATCTAACATGGGTGGAG+TGG | - | chr4_3:64543543-64543562 | None:intergenic | 45.0% | |
AGAGACACAACTTCAGCATC+TGG | - | chr4_3:64543743-64543762 | None:intergenic | 45.0% | |
!! | TCTGGTCTCTTTGAAACCCT+TGG | - | chr4_3:64543817-64543836 | None:intergenic | 45.0% |
! | GAAGAAGACACAAAGTGCCA+TGG | + | chr4_3:64543852-64543871 | Msa0655690:CDS | 45.0% |
CATGATCCATGTCATGCACT+AGG | + | chr4_3:64543950-64543969 | Msa0655690:CDS | 45.0% | |
ACAATCACACGAATGTCCTC+TGG | - | chr4_3:64544104-64544123 | None:intergenic | 45.0% | |
AGAGGACATTCGTGTGATTG+TGG | + | chr4_3:64544103-64544122 | Msa0655690:CDS | 45.0% | |
! | ATTGTGGTCGTGTGTTTTCC+AGG | + | chr4_3:64544119-64544138 | Msa0655690:CDS | 45.0% |
! | GTTTGACTTCCTAGGAAGCT+AGG | - | chr4_3:64544424-64544443 | None:intergenic | 45.0% |
AAGCCTGCATAATGATGAGG+GGG | - | chr4_3:64544674-64544693 | None:intergenic | 45.0% | |
GCAAAGCCTGCATAATGATG+AGG | - | chr4_3:64544677-64544696 | None:intergenic | 45.0% | |
AGATCTGGGTCATGACTCAT+AGG | - | chr4_3:64544913-64544932 | None:intergenic | 45.0% | |
CATTTGCCCTTTGATTAGGG+TGG | + | chr4_3:64545425-64545444 | Msa0655690:intron | 45.0% | |
! | TTGTTGCTTGGAACTCTGGT+TGG | - | chr4_3:64545497-64545516 | None:intergenic | 45.0% |
!! | GCAGTTCTAGAAGAACATGC+AGG | - | chr4_3:64545528-64545547 | None:intergenic | 45.0% |
AAGCACAAGTCCATCTAGTG+AGG | + | chr4_3:64545551-64545570 | Msa0655690:CDS | 45.0% | |
! | GTTATGGTGGTGATGAGAAG+TGG | - | chr4_3:64545691-64545710 | None:intergenic | 45.0% |
!!! | TATTTTATCTTATAAAAAAA+AGG | - | chr4_3:64545186-64545205 | None:intergenic | 5.0% |
GTACTGTACCTCACTGCAAC+AGG | + | chr4_3:64543470-64543489 | Msa0655690:five_prime_UTR | 50.0% | |
TCAGAGAACCTGTTGCAGTG+AGG | - | chr4_3:64543481-64543500 | None:intergenic | 50.0% | |
AGCAGTAGTGGCATCAGAAG+AGG | - | chr4_3:64543576-64543595 | None:intergenic | 50.0% | |
AGGTCACCTAGTGCATGACA+TGG | - | chr4_3:64543959-64543978 | None:intergenic | 50.0% | |
CATGCACTAGGTGACCTTGT+TGG | + | chr4_3:64543962-64543981 | Msa0655690:CDS | 50.0% | |
TGTGTGTGAGTGAGTGTGTG+TGG | + | chr4_3:64544271-64544290 | Msa0655690:intron | 50.0% | |
TCTTCTGCACCTAGCTTCCT+AGG | + | chr4_3:64544412-64544431 | Msa0655690:intron | 50.0% | |
ATAATGATGAGGGGGTGGGT+GGG | - | chr4_3:64544666-64544685 | None:intergenic | 50.0% | |
CTGCATAATGATGAGGGGGT+GGG | - | chr4_3:64544670-64544689 | None:intergenic | 50.0% | |
CAAGACGCATGCACAATCAG+AGG | + | chr4_3:64545465-64545484 | Msa0655690:CDS | 50.0% | |
! | CAGGCTGCATTGTTGTTGCT+TGG | - | chr4_3:64545509-64545528 | None:intergenic | 50.0% |
!!! | TCAGGTGGTTTTGGAAGCAC+TGG | - | chr4_3:64545612-64545631 | None:intergenic | 50.0% |
! | TGGTGGTGATGAGAAGTGGA+AGG | - | chr4_3:64545687-64545706 | None:intergenic | 50.0% |
TCATTCTGCTTCCCCTTCTG+TGG | - | chr4_3:64546177-64546196 | None:intergenic | 50.0% | |
AGGTACAGTACAGCTGGTGG+TGG | - | chr4_3:64543461-64543480 | None:intergenic | 55.0% | |
GTGAGGTACAGTACAGCTGG+TGG | - | chr4_3:64543464-64543483 | None:intergenic | 55.0% | |
GCAGTGAGGTACAGTACAGC+TGG | - | chr4_3:64543467-64543486 | None:intergenic | 55.0% | |
ATGTTACCTGGTGTGCCTGC+TGG | - | chr4_3:64543647-64543666 | None:intergenic | 55.0% | |
CATAATGATGAGGGGGTGGG+TGG | - | chr4_3:64544667-64544686 | None:intergenic | 55.0% | |
CCTGCATAATGATGAGGGGG+TGG | - | chr4_3:64544671-64544690 | None:intergenic | 55.0% | |
CCACCCCCTCATCATTATGC+AGG | + | chr4_3:64544668-64544687 | Msa0655690:intron | 55.0% | |
ATGTCCTCAGCCACCACAGA+AGG | + | chr4_3:64546161-64546180 | Msa0655690:CDS | 55.0% | |
TGTCCTCAGCCACCACAGAA+GGG | + | chr4_3:64546162-64546181 | Msa0655690:CDS | 55.0% | |
TTCTGCTTCCCCTTCTGTGG+TGG | - | chr4_3:64546174-64546193 | None:intergenic | 55.0% | |
AGAAGACCAGCAGGCACACC+AGG | + | chr4_3:64543638-64543657 | Msa0655690:CDS | 60.0% | |
GTCCTCAGCCACCACAGAAG+GGG | + | chr4_3:64546163-64546182 | Msa0655690:CDS | 60.0% | |
TTCCCCTTCTGTGGTGGCTG+AGG | - | chr4_3:64546168-64546187 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 64543230 | 64546433 | 64543230 | ID=Msa0655690;Name=Msa0655690 |
chr4_3 | mRNA | 64543230 | 64546433 | 64543230 | ID=Msa0655690-mRNA-1;Parent=Msa0655690;Name=Msa0655690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=321|1|1|1|1|1|3|237|421 |
chr4_3 | exon | 64543230 | 64543659 | 64543230 | ID=Msa0655690-mRNA-1:exon:18236;Parent=Msa0655690-mRNA-1 |
chr4_3 | exon | 64543738 | 64544140 | 64543738 | ID=Msa0655690-mRNA-1:exon:18237;Parent=Msa0655690-mRNA-1 |
chr4_3 | exon | 64545443 | 64546433 | 64545443 | ID=Msa0655690-mRNA-1:exon:18238;Parent=Msa0655690-mRNA-1 |
chr4_3 | five_prime_UTR | 64543230 | 64543550 | 64543230 | ID=Msa0655690-mRNA-1:five_prime_utr;Parent=Msa0655690-mRNA-1 |
chr4_3 | CDS | 64543551 | 64543659 | 64543551 | ID=Msa0655690-mRNA-1:cds;Parent=Msa0655690-mRNA-1 |
chr4_3 | CDS | 64543738 | 64544140 | 64543738 | ID=Msa0655690-mRNA-1:cds;Parent=Msa0655690-mRNA-1 |
chr4_3 | CDS | 64545443 | 64546196 | 64545443 | ID=Msa0655690-mRNA-1:cds;Parent=Msa0655690-mRNA-1 |
chr4_3 | three_prime_UTR | 64546197 | 64546433 | 64546197 | ID=Msa0655690-mRNA-1:three_prime_utr;Parent=Msa0655690-mRNA-1 |
Gene Sequence |
Protein sequence |