AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655690 MtrunA17_Chr8g0375521 98.812 421 5 0 1 421 1 421 0.0 869
Msa0655690 MtrunA17_Chr6g0479921 58.278 453 127 11 16 418 17 457 1.34e-169 483
Msa0655690 MtrunA17_Chr1g0181381 64.103 156 55 1 27 182 38 192 2.09e-73 238
Msa0655690 MtrunA17_Chr1g0185121 49.793 241 108 5 27 261 40 273 2.15e-73 236
Msa0655690 MtrunA17_Chr1g0210821 45.669 254 133 4 30 280 47 298 1.08e-72 238
Msa0655690 MtrunA17_Chr7g0263941 59.116 181 66 3 8 182 9 187 1.45e-72 233
Msa0655690 MtrunA17_Chr8g0342421 64.103 156 54 2 27 182 62 215 5.19e-72 235
Msa0655690 MtrunA17_Chr8g0373541 57.143 189 67 4 2 182 4 186 1.62e-71 233
Msa0655690 MtrunA17_Chr2g0330171 63.462 156 55 2 27 182 46 199 3.62e-71 231
Msa0655690 MtrunA17_Chr2g0326381 62.179 156 58 1 27 182 32 186 4.20e-71 229
Msa0655690 MtrunA17_Chr1g0191991 64.744 156 53 2 27 182 63 216 7.00e-71 232
Msa0655690 MtrunA17_Chr1g0151351 61.392 158 60 1 27 184 41 197 1.18e-70 229
Msa0655690 MtrunA17_Chr4g0040571 64.103 156 54 2 27 182 39 192 2.97e-70 230
Msa0655690 MtrunA17_Chr1g0199101 60.897 156 59 2 27 182 47 200 4.02e-69 228
Msa0655690 MtrunA17_Chr4g0029521 60.256 156 61 1 27 182 38 192 4.36e-69 226
Msa0655690 MtrunA17_Chr1g0163001 61.538 156 58 2 27 182 43 196 4.33e-68 225
Msa0655690 MtrunA17_Chr1g0162971 59.615 156 61 2 27 182 41 194 4.46e-68 223
Msa0655690 MtrunA17_Chr7g0268961 67.123 146 46 2 37 182 32 175 5.08e-68 224
Msa0655690 MtrunA17_Chr3g0141431 58.974 156 63 1 27 182 22 176 4.56e-67 219
Msa0655690 MtrunA17_Chr2g0324991 65.414 133 44 2 38 170 3 133 9.60e-61 194
Msa0655690 MtrunA17_Chr2g0320341 33.974 156 89 4 36 178 224 378 6.84e-21 94.0
Msa0655690 MtrunA17_Chr3g0123941 37.107 159 80 6 33 178 114 265 3.22e-19 88.2
Msa0655690 MtrunA17_Chr8g0382121 35.714 154 88 5 35 178 104 256 2.49e-18 85.1
Msa0655690 MtrunA17_Chr1g0200421 32.215 149 89 5 41 178 236 383 6.38e-17 82.8
Msa0655690 MtrunA17_Chr4g0057391 34.884 86 56 0 311 396 58 143 7.49e-15 71.6
Msa0655690 MtrunA17_Chr1g0173841 29.891 184 106 7 3 178 187 355 2.74e-13 70.9
Msa0655690 MtrunA17_Chr8g0352011 32.394 142 85 5 48 181 171 309 3.01e-13 70.5
Msa0655690 MtrunA17_Chr7g0258011 30.986 142 87 5 48 181 181 319 6.93e-13 69.3
Msa0655690 MtrunA17_Chr4g0026521 30.935 139 85 5 48 178 123 258 7.99e-12 65.9
Msa0655690 MtrunA17_Chr1g0198651 27.374 179 114 6 15 181 74 248 3.06e-11 63.9
Msa0655690 MtrunA17_Chr2g0321291 30.216 139 86 5 48 178 138 273 3.24e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655690 AT2G01940.1 57.482 421 151 9 17 421 34 442 2.77e-164 469
Msa0655690 AT2G01940.3 58.111 413 142 11 27 421 44 443 8.40e-159 455
Msa0655690 AT1G68130.1 56.863 408 137 9 21 419 34 411 2.79e-149 430
Msa0655690 AT1G25250.3 53.846 429 137 10 3 421 8 385 1.94e-145 419
Msa0655690 AT1G25250.1 54.315 394 120 9 37 421 20 362 8.70e-135 391
Msa0655690 AT2G01940.2 54.247 365 139 9 73 421 1 353 7.57e-127 371
Msa0655690 AT1G68130.2 52.113 355 132 8 73 419 1 325 1.31e-112 333
Msa0655690 AT1G25250.2 50.000 358 119 9 73 421 1 307 5.08e-106 316
Msa0655690 AT3G50700.1 56.757 185 74 3 2 182 5 187 7.57e-72 233
Msa0655690 AT5G66730.1 57.377 183 74 3 2 182 5 185 8.35e-71 231
Msa0655690 AT4G02670.2 49.569 232 95 4 27 243 55 279 3.26e-70 227
Msa0655690 AT4G02670.1 49.569 232 95 4 27 243 53 277 3.82e-70 227
Msa0655690 AT3G45260.2 55.747 174 76 1 27 200 39 211 1.15e-69 227
Msa0655690 AT3G45260.1 55.747 174 76 1 27 200 39 211 1.15e-69 227
Msa0655690 AT1G55110.3 61.538 156 59 1 27 182 63 217 1.30e-69 227
Msa0655690 AT1G55110.1 61.538 156 59 1 27 182 63 217 1.30e-69 227
Msa0655690 AT1G55110.2 61.538 156 59 1 27 182 63 217 1.30e-69 227
Msa0655690 AT3G13810.6 62.821 156 57 1 27 182 51 205 2.74e-69 228
Msa0655690 AT5G60470.2 54.098 183 83 1 27 209 44 225 3.58e-69 226
Msa0655690 AT3G13810.4 62.821 156 57 1 27 182 70 224 3.91e-69 228
Msa0655690 AT3G13810.1 62.821 156 57 1 27 182 70 224 3.91e-69 228
Msa0655690 AT3G13810.5 62.821 156 57 1 27 182 65 219 4.03e-69 227
Msa0655690 AT5G60470.3 54.098 183 83 1 27 209 40 221 4.35e-69 226
Msa0655690 AT2G02080.1 55.307 179 75 3 27 202 54 230 4.71e-69 227
Msa0655690 AT2G02080.4 55.307 179 75 3 27 202 54 230 4.71e-69 227
Msa0655690 AT2G02080.5 55.307 179 75 3 27 202 54 230 4.71e-69 227
Msa0655690 AT2G02080.3 55.307 179 75 3 27 202 54 230 4.71e-69 227
Msa0655690 AT5G03150.1 61.538 156 59 1 27 182 53 207 6.02e-69 227
Msa0655690 AT1G14580.1 58.974 156 62 2 27 182 53 206 2.86e-68 224
Msa0655690 AT1G14580.2 58.974 156 62 2 27 182 53 206 2.86e-68 224
Msa0655690 AT1G03840.1 63.462 156 55 2 27 182 41 194 2.93e-68 225
Msa0655690 AT1G14580.3 58.974 156 62 2 27 182 67 220 5.03e-68 224
Msa0655690 AT2G02070.2 61.538 156 58 2 27 182 52 205 1.23e-67 226
Msa0655690 AT2G02070.1 61.538 156 58 2 27 182 52 205 1.23e-67 226
Msa0655690 AT5G44160.1 49.302 215 97 5 27 236 37 244 2.64e-66 219
Msa0655690 AT3G13810.3 64.138 145 51 1 38 182 68 211 7.27e-65 216
Msa0655690 AT5G60470.1 54.070 172 78 1 38 209 46 216 8.90e-65 214
Msa0655690 AT3G13810.2 64.138 145 51 1 38 182 82 225 1.05e-64 216
Msa0655690 AT1G03840.2 62.179 156 55 3 27 182 41 192 1.10e-64 216
Msa0655690 AT5G44160.2 49.268 205 92 5 37 236 8 205 5.87e-63 209
Msa0655690 AT2G02080.6 53.205 156 68 3 51 203 1 154 2.42e-56 192
Msa0655690 AT2G02080.2 53.205 156 68 3 51 203 1 154 2.42e-56 192
Msa0655690 AT5G22890.1 31.138 167 101 5 25 178 186 351 6.81e-17 82.4
Msa0655690 AT1G34370.3 29.231 195 119 7 36 216 14 203 1.11e-16 80.5
Msa0655690 AT1G34370.2 29.231 195 119 7 36 216 224 413 1.72e-16 81.6
Msa0655690 AT1G34370.1 29.231 195 119 7 36 216 224 413 1.72e-16 81.6
Msa0655690 AT3G48550.1 31.034 174 87 6 226 393 11 157 1.50e-15 74.3
Msa0655690 AT3G57670.1 30.986 142 87 5 48 181 209 347 4.25e-12 67.8

Find 96 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATGCATTTGAAGATTC+TGG 0.162069 4_3:-64543832 None:intergenic
AACAGGTTCTCTGAATTTAT+TGG 0.193173 4_3:+64543487 Msa0655690:five_prime_UTR
GTTCATATTCTTTATTAATA+TGG 0.201980 4_3:+64546343 Msa0655690:three_prime_UTR
GATGCAGTGTTTAGCACTTT+AGG 0.210187 4_3:+64546373 Msa0655690:three_prime_UTR
CAGTTTCAATCTTCAACTTC+TGG 0.249687 4_3:+64546101 Msa0655690:CDS
AGGAATGAAGAGAGAGAAAA+AGG 0.277026 4_3:-64543348 None:intergenic
ATGCAGTGTTTAGCACTTTA+GGG 0.291900 4_3:+64546374 Msa0655690:three_prime_UTR
AATGGTTTATCAGGTGGTTT+TGG 0.294809 4_3:-64545618 None:intergenic
TTGAGTTTGAAAATGCTAAA+AGG 0.314430 4_3:+64545967 Msa0655690:CDS
AGAAGAAACATCCATTGTTA+TGG 0.316252 4_3:+64546133 Msa0655690:CDS
TCTGATTCTAACAAAGTCTT+TGG 0.339052 4_3:-64543767 None:intergenic
CTAAAATTTGCCTCACTAGA+TGG 0.342793 4_3:-64545561 None:intergenic
GCACTGGTAATCCTTGTAAT+GGG 0.366655 4_3:-64545593 None:intergenic
TTAATTTACAATAAGTCATA+TGG 0.369490 4_3:+64546247 Msa0655690:three_prime_UTR
GGTGCTGATAATGGTTTATC+AGG 0.373734 4_3:-64545627 None:intergenic
GAAGATAAGTAACACTGTTA+TGG 0.384215 4_3:+64546052 Msa0655690:CDS
TGATGCAAACAACTTGGTTC+TGG 0.390697 4_3:-64543929 None:intergenic
GAAGAAACATCCATTGTTAT+GGG 0.391163 4_3:+64546134 Msa0655690:CDS
AGAAAGATGATAGGTGATAA+TGG 0.391803 4_3:-64543391 None:intergenic
ACACACTTGAAACTTTCAAT+AGG 0.397442 4_3:+64545786 Msa0655690:CDS
ATTGTTGTTGCTTGGAACTC+TGG 0.397896 4_3:-64545498 None:intergenic
CAGGCTGCATTGTTGTTGCT+TGG 0.402771 4_3:-64545506 None:intergenic
AACAAGGTAGGTGCTGATAA+TGG 0.405416 4_3:-64545636 None:intergenic
GAAACTGTTGCTTACAAGCT+TGG 0.418931 4_3:-64546085 None:intergenic
AATTAAAGATGATATATTGC+TGG 0.423127 4_3:+64546219 Msa0655690:three_prime_UTR
TGTATTACTTGAAGAAGAAA+AGG 0.432708 4_3:+64546321 Msa0655690:three_prime_UTR
TCTGGTCTCTTTGAAACCCT+TGG 0.440797 4_3:-64543814 None:intergenic
ATGTTACCTGGTGTGCCTGC+TGG 0.441395 4_3:-64543644 None:intergenic
AGAGACACAACTTCAGCATC+TGG 0.455957 4_3:-64543740 None:intergenic
AGAGTTGAAGTTCTAAGTTA+TGG 0.456212 4_3:-64545704 None:intergenic
AGCACTGGTAATCCTTGTAA+TGG 0.468962 4_3:-64545594 None:intergenic
ACAATGGATGTTTCTTCTGA+TGG 0.469771 4_3:-64546128 None:intergenic
TTCCCCTTCTGTGGTGGCTG+AGG 0.471434 4_3:-64546165 None:intergenic
GTACTGTACCTCACTGCAAC+AGG 0.481858 4_3:+64543470 Msa0655690:five_prime_UTR
AGTATATCAGCCCCATTACA+AGG 0.490202 4_3:+64545582 Msa0655690:CDS
TTCTGCTTCCCCTTCTGTGG+TGG 0.491783 4_3:-64546171 None:intergenic
TTGTTGCTTGGAACTCTGGT+TGG 0.493027 4_3:-64545494 None:intergenic
TTCGTTGAAAGAAAGATGAT+AGG 0.498716 4_3:-64543400 None:intergenic
ACATAGTAATCATAAACAAT+GGG 0.505280 4_3:+64544009 Msa0655690:CDS
GTTTGTGAGATCTGTAACCA+AGG 0.507755 4_3:+64543797 Msa0655690:CDS
TACTAGTGAGGAGCTAAAGT+TGG 0.509569 4_3:+64545875 Msa0655690:CDS
GTGAAGTTTGTAATAGTGAG+TGG 0.510773 4_3:-64543436 None:intergenic
CAAAGAAAAGCTCGTGGCAA+AGG 0.515637 4_3:+64543261 Msa0655690:five_prime_UTR
AGAAGACCAGCAGGCACACC+AGG 0.525697 4_3:+64543638 Msa0655690:CDS
AAACAAGCACAAGATGAACT+TGG 0.527243 4_3:+64545996 Msa0655690:CDS
AAAGTTGGCAATGACAGAAA+AGG 0.528627 4_3:+64545890 Msa0655690:CDS
ACTTGAGGGTTTATAGAGGA+AGG 0.528633 4_3:-64545729 None:intergenic
TCATTCTGCTTCCCCTTCTG+TGG 0.531823 4_3:-64546174 None:intergenic
AACATAGTAATCATAAACAA+TGG 0.531879 4_3:+64544008 Msa0655690:CDS
ATTAACTGTGTTATCTAACA+TGG 0.533403 4_3:-64543549 None:intergenic
TTTGAAAGAGTTTACTAGTG+AGG 0.537749 4_3:+64545863 Msa0655690:CDS
CATGATCCATGTCATGCACT+AGG 0.544901 4_3:+64543950 Msa0655690:CDS
TTCTACTTGAGGGTTTATAG+AGG 0.552798 4_3:-64545733 None:intergenic
TTTGTGAGATCTGTAACCAA+GGG 0.553552 4_3:+64543798 Msa0655690:CDS
GCTGATAATGGTTTATCAGG+TGG 0.558635 4_3:-64545624 None:intergenic
GTTGAAGTTCTAAGTTATGG+TGG 0.560774 4_3:-64545701 None:intergenic
ATGTCCTCAGCCACCACAGA+AGG 0.565952 4_3:+64546161 Msa0655690:CDS
GGATCATGATGCAAACAACT+TGG 0.569323 4_3:-64543935 None:intergenic
AGAGGACATTCGTGTGATTG+TGG 0.573870 4_3:+64544103 Msa0655690:CDS
CATGCACTAGGTGACCTTGT+TGG 0.575089 4_3:+64543962 Msa0655690:CDS
GTTATGGTGGTGATGAGAAG+TGG 0.575098 4_3:-64545688 None:intergenic
ACAATCACACGAATGTCCTC+TGG 0.575624 4_3:-64544101 None:intergenic
TGATAATGCAAAAGCAGTAG+TGG 0.577782 4_3:-64543585 None:intergenic
GTTATCTAACATGGGTGGAG+TGG 0.580079 4_3:-64543540 None:intergenic
GCAGTGAGGTACAGTACAGC+TGG 0.584238 4_3:-64543464 None:intergenic
TGTCCTCAGCCACCACAGAA+GGG 0.586753 4_3:+64546162 Msa0655690:CDS
GTTTGTGACAAATGCAACAA+AGG 0.587309 4_3:+64544031 Msa0655690:CDS
GAAGAAGACACAAAGTGCCA+TGG 0.587753 4_3:+64543852 Msa0655690:CDS
TCTGAATTAGTTAACAAGGT+AGG 0.590831 4_3:-64545648 None:intergenic
TGCAGTGTTTAGCACTTTAG+GGG 0.591983 4_3:+64546375 Msa0655690:three_prime_UTR
AGCAGTAGTGGCATCAGAAG+AGG 0.593577 4_3:-64543573 None:intergenic
TGAAGTTTGTAATAGTGAGT+GGG 0.595307 4_3:-64543435 None:intergenic
ATAATGAGTCAGAGAAACAA+AGG 0.608502 4_3:+64545811 Msa0655690:CDS
CAAACTTGCTAGTTCCAATG+TGG 0.610019 4_3:-64545844 None:intergenic
AAGGAATGATGTATCCACAT+TGG 0.613625 4_3:+64545830 Msa0655690:CDS
GTCCTCAGCCACCACAGAAG+GGG 0.615788 4_3:+64546163 Msa0655690:CDS
TTAACTGTGTTATCTAACAT+GGG 0.627719 4_3:-64543548 None:intergenic
CAAGACGCATGCACAATCAG+AGG 0.629083 4_3:+64545465 Msa0655690:CDS
ATCAAAACATGTGGTACCAG+AGG 0.630022 4_3:+64544085 Msa0655690:CDS
TGTATCTGAATTAGTTAACA+AGG 0.634479 4_3:-64545652 None:intergenic
GCAGTTCTAGAAGAACATGC+AGG 0.635627 4_3:-64545525 None:intergenic
CACTGGTAATCCTTGTAATG+GGG 0.639858 4_3:-64545592 None:intergenic
AGGTACAGTACAGCTGGTGG+TGG 0.644840 4_3:-64543458 None:intergenic
TGGTGGTGATGAGAAGTGGA+AGG 0.646826 4_3:-64545684 None:intergenic
TCTCTGACAACTATTGAACA+AGG 0.655338 4_3:+64546407 Msa0655690:three_prime_UTR
AAAGCACATATCAAAACATG+TGG 0.657146 4_3:+64544076 Msa0655690:CDS
AAGCACAAGTCCATCTAGTG+AGG 0.660327 4_3:+64545551 Msa0655690:CDS
AATGTTTCTTGATTCCAACA+AGG 0.660532 4_3:-64543976 None:intergenic
AGGTCACCTAGTGCATGACA+TGG 0.667882 4_3:-64543956 None:intergenic
GGACATGTAACCCATAACAA+TGG 0.669538 4_3:-64546144 None:intergenic
ACTGTGTTATCTAACATGGG+TGG 0.682813 4_3:-64543545 None:intergenic
GCAAAGCAAAGAAAAGCTCG+TGG 0.689460 4_3:+64543255 Msa0655690:five_prime_UTR
TTTGCATTATCAGAAAATGG+GGG 0.689769 4_3:+64543596 Msa0655690:CDS
TTGAAAAGAGAAACAACACA+AGG 0.699162 4_3:+64543881 Msa0655690:CDS
TCAGAGAACCTGTTGCAGTG+AGG 0.725813 4_3:-64543478 None:intergenic
GTGAGGTACAGTACAGCTGG+TGG 0.778381 4_3:-64543461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATACTAATATTAATT+TGG - chr4_3:64544357-64544376 None:intergenic 10.0%
!!! ATAATAAAATAGTACTATTT+TGG + chr4_3:64544551-64544570 Msa0655690:intron 10.0%
!! ATCTAGTTATTAATATATAT+AGG + chr4_3:64545043-64545062 Msa0655690:intron 10.0%
!!! TTTTTTATAACCTTTTTTTG+TGG + chr4_3:64543705-64543724 Msa0655690:intron 15.0%
!!! TTTTTATAACCTTTTTTTGT+GGG + chr4_3:64543706-64543725 Msa0655690:intron 15.0%
!!! CTCTCAAATATAAAATTTTA+GGG - chr4_3:64544446-64544465 None:intergenic 15.0%
!!! ACTCTCAAATATAAAATTTT+AGG - chr4_3:64544447-64544466 None:intergenic 15.0%
!! TAGCTAATATTATAAGTTTA+TGG + chr4_3:64544738-64544757 Msa0655690:intron 15.0%
!! ATTGATAAAAAAATGTAGAT+AGG - chr4_3:64544776-64544795 None:intergenic 15.0%
!! AATTAATTAATCAAAGATCT+GGG - chr4_3:64544927-64544946 None:intergenic 15.0%
!! AAATTAATTAATCAAAGATC+TGG - chr4_3:64544928-64544947 None:intergenic 15.0%
!! TTTCATCTTAAAAAATAACA+TGG - chr4_3:64544975-64544994 None:intergenic 15.0%
!! TTAATTTACAATAAGTCATA+TGG + chr4_3:64546247-64546266 Msa0655690:three_prime_UTR 15.0%
!! AAAGAAAGAAAAAAAGAATA+GGG - chr4_3:64546283-64546302 None:intergenic 15.0%
!! AAAAGAAAGAAAAAAAGAAT+AGG - chr4_3:64546284-64546303 None:intergenic 15.0%
!! GTTCATATTCTTTATTAATA+TGG + chr4_3:64546343-64546362 Msa0655690:three_prime_UTR 15.0%
!!! TATGAAATCAGCTTTTTTTA+AGG - chr4_3:64543317-64543336 None:intergenic 20.0%
!! AACATAGTAATCATAAACAA+TGG + chr4_3:64544008-64544027 Msa0655690:CDS 20.0%
!! ACATAGTAATCATAAACAAT+GGG + chr4_3:64544009-64544028 Msa0655690:CDS 20.0%
!! AATTAAATTCTCATCTTCTT+AGG + chr4_3:64544506-64544525 Msa0655690:intron 20.0%
!!! TTTTATCAATAAACCAAACA+AGG + chr4_3:64544786-64544805 Msa0655690:intron 20.0%
!! TACTAAAATGAATCATATGT+AGG + chr4_3:64544809-64544828 Msa0655690:intron 20.0%
!!! GTCAAATTATATTTTCATAC+AGG + chr4_3:64545208-64545227 Msa0655690:intron 20.0%
!! AGTCAATAACCATATATTAT+AGG - chr4_3:64545397-64545416 None:intergenic 20.0%
!! AATTAAAGATGATATATTGC+TGG + chr4_3:64546219-64546238 Msa0655690:three_prime_UTR 20.0%
! TTAACTGTGTTATCTAACAT+GGG - chr4_3:64543551-64543570 None:intergenic 25.0%
! ATTAACTGTGTTATCTAACA+TGG - chr4_3:64543552-64543571 None:intergenic 25.0%
!! CTTTTGCATTATCAGAAAAT+GGG + chr4_3:64543594-64543613 Msa0655690:CDS 25.0%
!! TTTTGCATTATCAGAAAATG+GGG + chr4_3:64543595-64543614 Msa0655690:CDS 25.0%
! TATTTGTAAGATATGTTACC+TGG - chr4_3:64543659-64543678 None:intergenic 25.0%
! TACAATAAAGATGGAAAACT+TGG - chr4_3:64544197-64544216 None:intergenic 25.0%
! GAAACTATCTACAATAAAGA+TGG - chr4_3:64544206-64544225 None:intergenic 25.0%
!! TTTTCTCTCTCTTTCTTTTT+CGG + chr4_3:64544234-64544253 Msa0655690:intron 25.0%
! TGAGAATTTAATTGCAAAGA+GGG - chr4_3:64544499-64544518 None:intergenic 25.0%
! ATGAGAATTTAATTGCAAAG+AGG - chr4_3:64544500-64544519 None:intergenic 25.0%
!!! ATTCATTTTAGTACCTTGTT+TGG - chr4_3:64544802-64544821 None:intergenic 25.0%
! TAAGACAGAATGATGAAATA+GGG - chr4_3:64544864-64544883 None:intergenic 25.0%
! ATAAGACAGAATGATGAAAT+AGG - chr4_3:64544865-64544884 None:intergenic 25.0%
! TAAGATGAAATAGCTATAAC+AGG + chr4_3:64544985-64545004 Msa0655690:intron 25.0%
! TAATATATATAGGCCTTGAT+TGG + chr4_3:64545053-64545072 Msa0655690:intron 25.0%
! TGTATCTGAATTAGTTAACA+AGG - chr4_3:64545655-64545674 None:intergenic 25.0%
!!! AATTTGGTTTTTCTACTTGA+GGG - chr4_3:64545746-64545765 None:intergenic 25.0%
!!! TAGTTTTGATCGTTTGAATT+TGG - chr4_3:64545762-64545781 None:intergenic 25.0%
! TTGAGTTTGAAAATGCTAAA+AGG + chr4_3:64545967-64545986 Msa0655690:CDS 25.0%
! TGTATTACTTGAAGAAGAAA+AGG + chr4_3:64546321-64546340 Msa0655690:three_prime_UTR 25.0%
! GATAATGGCAAAAAAACAGA+AGG - chr4_3:64543379-64543398 None:intergenic 30.0%
AGAAAGATGATAGGTGATAA+TGG - chr4_3:64543394-64543413 None:intergenic 30.0%
TTCGTTGAAAGAAAGATGAT+AGG - chr4_3:64543403-64543422 None:intergenic 30.0%
TGAAGTTTGTAATAGTGAGT+GGG - chr4_3:64543438-64543457 None:intergenic 30.0%
AACAGGTTCTCTGAATTTAT+TGG + chr4_3:64543487-64543506 Msa0655690:five_prime_UTR 30.0%
! GCTTTTGCATTATCAGAAAA+TGG + chr4_3:64543593-64543612 Msa0655690:CDS 30.0%
TTTGCATTATCAGAAAATGG+GGG + chr4_3:64543596-64543615 Msa0655690:CDS 30.0%
TCTGATTCTAACAAAGTCTT+TGG - chr4_3:64543770-64543789 None:intergenic 30.0%
TTCTATGCATTTGAAGATTC+TGG - chr4_3:64543835-64543854 None:intergenic 30.0%
! TCTCTTTTCAACAATTTCCA+TGG - chr4_3:64543872-64543891 None:intergenic 30.0%
TTGAAAAGAGAAACAACACA+AGG + chr4_3:64543881-64543900 Msa0655690:CDS 30.0%
AATGTTTCTTGATTCCAACA+AGG - chr4_3:64543979-64543998 None:intergenic 30.0%
AAAGCACATATCAAAACATG+TGG + chr4_3:64544076-64544095 Msa0655690:CDS 30.0%
CAATATGAGAAAGTGAAAGA+TGG - chr4_3:64544165-64544184 None:intergenic 30.0%
GTTCATCATTCATCAAATTC+AGG + chr4_3:64544293-64544312 Msa0655690:intron 30.0%
! CAATTGACTGTGTTTGTTAA+CGG + chr4_3:64544328-64544347 Msa0655690:intron 30.0%
TAGTAGCTACTTAATGATAC+TGG - chr4_3:64544716-64544735 None:intergenic 30.0%
!! GAAGAGTTAATTTGTACTAG+TGG + chr4_3:64544835-64544854 Msa0655690:intron 30.0%
ACAAACTGTTTATCCAATCA+AGG - chr4_3:64545069-64545088 None:intergenic 30.0%
! TTTTTACATGCTCTCTCAAA+CGG + chr4_3:64545318-64545337 Msa0655690:intron 30.0%
CCATATATTATAGGTCTGTT+TGG - chr4_3:64545388-64545407 None:intergenic 30.0%
CCAAACAGACCTATAATATA+TGG + chr4_3:64545385-64545404 Msa0655690:intron 30.0%
TTACATTTGCCCTTTGATTA+GGG + chr4_3:64545422-64545441 Msa0655690:intron 30.0%
TCTGAATTAGTTAACAAGGT+AGG - chr4_3:64545651-64545670 None:intergenic 30.0%
!! AGAGTTGAAGTTCTAAGTTA+TGG - chr4_3:64545707-64545726 None:intergenic 30.0%
!!! GAATTTGGTTTTTCTACTTG+AGG - chr4_3:64545747-64545766 None:intergenic 30.0%
ACACACTTGAAACTTTCAAT+AGG + chr4_3:64545786-64545805 Msa0655690:CDS 30.0%
ATAATGAGTCAGAGAAACAA+AGG + chr4_3:64545811-64545830 Msa0655690:CDS 30.0%
TTTGAAAGAGTTTACTAGTG+AGG + chr4_3:64545863-64545882 Msa0655690:CDS 30.0%
GAAGATAAGTAACACTGTTA+TGG + chr4_3:64546052-64546071 Msa0655690:CDS 30.0%
AGAAGAAACATCCATTGTTA+TGG + chr4_3:64546133-64546152 Msa0655690:CDS 30.0%
GAAGAAACATCCATTGTTAT+GGG + chr4_3:64546134-64546153 Msa0655690:CDS 30.0%
AGGAATGAAGAGAGAGAAAA+AGG - chr4_3:64543351-64543370 None:intergenic 35.0%
CAAAAAAACAGAAGGAGGAA+AGG - chr4_3:64543371-64543390 None:intergenic 35.0%
AATGGCAAAAAAACAGAAGG+AGG - chr4_3:64543376-64543395 None:intergenic 35.0%
GTGAAGTTTGTAATAGTGAG+TGG - chr4_3:64543439-64543458 None:intergenic 35.0%
! TGATAATGCAAAAGCAGTAG+TGG - chr4_3:64543588-64543607 None:intergenic 35.0%
AAAAGAAAAAGAAGACCAGC+AGG + chr4_3:64543629-64543648 Msa0655690:CDS 35.0%
CTAAACACACCCACAAAAAA+AGG - chr4_3:64543718-64543737 None:intergenic 35.0%
TTTGTGAGATCTGTAACCAA+GGG + chr4_3:64543798-64543817 Msa0655690:CDS 35.0%
GTTTGTGACAAATGCAACAA+AGG + chr4_3:64544031-64544050 Msa0655690:CDS 35.0%
!!! ATTTTAGGGTTTGACTTCCT+AGG - chr4_3:64544432-64544451 None:intergenic 35.0%
TTAATGATACTGGCACTTAC+AGG - chr4_3:64544706-64544725 None:intergenic 35.0%
GTTACATTTGCCCTTTGATT+AGG + chr4_3:64545421-64545440 Msa0655690:intron 35.0%
CTAAAATTTGCCTCACTAGA+TGG - chr4_3:64545564-64545583 None:intergenic 35.0%
! AATGGTTTATCAGGTGGTTT+TGG - chr4_3:64545621-64545640 None:intergenic 35.0%
!! GTTGAAGTTCTAAGTTATGG+TGG - chr4_3:64545704-64545723 None:intergenic 35.0%
TTCTACTTGAGGGTTTATAG+AGG - chr4_3:64545736-64545755 None:intergenic 35.0%
AAGGAATGATGTATCCACAT+TGG + chr4_3:64545830-64545849 Msa0655690:CDS 35.0%
AAAGTTGGCAATGACAGAAA+AGG + chr4_3:64545890-64545909 Msa0655690:CDS 35.0%
AAACAAGCACAAGATGAACT+TGG + chr4_3:64545996-64546015 Msa0655690:CDS 35.0%
CAGTTTCAATCTTCAACTTC+TGG + chr4_3:64546101-64546120 Msa0655690:CDS 35.0%
ACAATGGATGTTTCTTCTGA+TGG - chr4_3:64546131-64546150 None:intergenic 35.0%
ATGCAGTGTTTAGCACTTTA+GGG + chr4_3:64546374-64546393 Msa0655690:three_prime_UTR 35.0%
TCTCTGACAACTATTGAACA+AGG + chr4_3:64546407-64546426 Msa0655690:three_prime_UTR 35.0%
ACTGTGTTATCTAACATGGG+TGG - chr4_3:64543548-64543567 None:intergenic 40.0%
GTTTGTGAGATCTGTAACCA+AGG + chr4_3:64543797-64543816 Msa0655690:CDS 40.0%
TGATGCAAACAACTTGGTTC+TGG - chr4_3:64543932-64543951 None:intergenic 40.0%
GGATCATGATGCAAACAACT+TGG - chr4_3:64543938-64543957 None:intergenic 40.0%
ATCAAAACATGTGGTACCAG+AGG + chr4_3:64544085-64544104 Msa0655690:CDS 40.0%
AAGAAAGCAGAACACAAACC+TGG - chr4_3:64544140-64544159 None:intergenic 40.0%
AAAGCCTGCATAATGATGAG+GGG - chr4_3:64544675-64544694 None:intergenic 40.0%
CAAAGCCTGCATAATGATGA+GGG - chr4_3:64544676-64544695 None:intergenic 40.0%
CAAACGGTTCAACAGTTCTT+AGG + chr4_3:64545334-64545353 Msa0655690:intron 40.0%
ACAGTTCTTAGGACTGTAGT+AGG + chr4_3:64545345-64545364 Msa0655690:intron 40.0%
AACTCTCCACCCTAATCAAA+GGG - chr4_3:64545434-64545453 None:intergenic 40.0%
AAACTCTCCACCCTAATCAA+AGG - chr4_3:64545435-64545454 None:intergenic 40.0%
! ATTGTTGTTGCTTGGAACTC+TGG - chr4_3:64545501-64545520 None:intergenic 40.0%
AGTATATCAGCCCCATTACA+AGG + chr4_3:64545582-64545601 Msa0655690:CDS 40.0%
CACTGGTAATCCTTGTAATG+GGG - chr4_3:64545595-64545614 None:intergenic 40.0%
! GCACTGGTAATCCTTGTAAT+GGG - chr4_3:64545596-64545615 None:intergenic 40.0%
!! AGCACTGGTAATCCTTGTAA+TGG - chr4_3:64545597-64545616 None:intergenic 40.0%
!! GCTGATAATGGTTTATCAGG+TGG - chr4_3:64545627-64545646 None:intergenic 40.0%
!! GGTGCTGATAATGGTTTATC+AGG - chr4_3:64545630-64545649 None:intergenic 40.0%
!! AACAAGGTAGGTGCTGATAA+TGG - chr4_3:64545639-64545658 None:intergenic 40.0%
ACTTGAGGGTTTATAGAGGA+AGG - chr4_3:64545732-64545751 None:intergenic 40.0%
!! CAAACTTGCTAGTTCCAATG+TGG - chr4_3:64545847-64545866 None:intergenic 40.0%
TACTAGTGAGGAGCTAAAGT+TGG + chr4_3:64545875-64545894 Msa0655690:CDS 40.0%
! GAAACTGTTGCTTACAAGCT+TGG - chr4_3:64546088-64546107 None:intergenic 40.0%
GGACATGTAACCCATAACAA+TGG - chr4_3:64546147-64546166 None:intergenic 40.0%
GATGCAGTGTTTAGCACTTT+AGG + chr4_3:64546373-64546392 Msa0655690:three_prime_UTR 40.0%
TGCAGTGTTTAGCACTTTAG+GGG + chr4_3:64546375-64546394 Msa0655690:three_prime_UTR 40.0%
GCAAAGCAAAGAAAAGCTCG+TGG + chr4_3:64543255-64543274 Msa0655690:five_prime_UTR 45.0%
CAAAGAAAAGCTCGTGGCAA+AGG + chr4_3:64543261-64543280 Msa0655690:five_prime_UTR 45.0%
GTTATCTAACATGGGTGGAG+TGG - chr4_3:64543543-64543562 None:intergenic 45.0%
AGAGACACAACTTCAGCATC+TGG - chr4_3:64543743-64543762 None:intergenic 45.0%
!! TCTGGTCTCTTTGAAACCCT+TGG - chr4_3:64543817-64543836 None:intergenic 45.0%
! GAAGAAGACACAAAGTGCCA+TGG + chr4_3:64543852-64543871 Msa0655690:CDS 45.0%
CATGATCCATGTCATGCACT+AGG + chr4_3:64543950-64543969 Msa0655690:CDS 45.0%
ACAATCACACGAATGTCCTC+TGG - chr4_3:64544104-64544123 None:intergenic 45.0%
AGAGGACATTCGTGTGATTG+TGG + chr4_3:64544103-64544122 Msa0655690:CDS 45.0%
! ATTGTGGTCGTGTGTTTTCC+AGG + chr4_3:64544119-64544138 Msa0655690:CDS 45.0%
! GTTTGACTTCCTAGGAAGCT+AGG - chr4_3:64544424-64544443 None:intergenic 45.0%
AAGCCTGCATAATGATGAGG+GGG - chr4_3:64544674-64544693 None:intergenic 45.0%
GCAAAGCCTGCATAATGATG+AGG - chr4_3:64544677-64544696 None:intergenic 45.0%
AGATCTGGGTCATGACTCAT+AGG - chr4_3:64544913-64544932 None:intergenic 45.0%
CATTTGCCCTTTGATTAGGG+TGG + chr4_3:64545425-64545444 Msa0655690:intron 45.0%
! TTGTTGCTTGGAACTCTGGT+TGG - chr4_3:64545497-64545516 None:intergenic 45.0%
!! GCAGTTCTAGAAGAACATGC+AGG - chr4_3:64545528-64545547 None:intergenic 45.0%
AAGCACAAGTCCATCTAGTG+AGG + chr4_3:64545551-64545570 Msa0655690:CDS 45.0%
! GTTATGGTGGTGATGAGAAG+TGG - chr4_3:64545691-64545710 None:intergenic 45.0%
!!! TATTTTATCTTATAAAAAAA+AGG - chr4_3:64545186-64545205 None:intergenic 5.0%
GTACTGTACCTCACTGCAAC+AGG + chr4_3:64543470-64543489 Msa0655690:five_prime_UTR 50.0%
TCAGAGAACCTGTTGCAGTG+AGG - chr4_3:64543481-64543500 None:intergenic 50.0%
AGCAGTAGTGGCATCAGAAG+AGG - chr4_3:64543576-64543595 None:intergenic 50.0%
AGGTCACCTAGTGCATGACA+TGG - chr4_3:64543959-64543978 None:intergenic 50.0%
CATGCACTAGGTGACCTTGT+TGG + chr4_3:64543962-64543981 Msa0655690:CDS 50.0%
TGTGTGTGAGTGAGTGTGTG+TGG + chr4_3:64544271-64544290 Msa0655690:intron 50.0%
TCTTCTGCACCTAGCTTCCT+AGG + chr4_3:64544412-64544431 Msa0655690:intron 50.0%
ATAATGATGAGGGGGTGGGT+GGG - chr4_3:64544666-64544685 None:intergenic 50.0%
CTGCATAATGATGAGGGGGT+GGG - chr4_3:64544670-64544689 None:intergenic 50.0%
CAAGACGCATGCACAATCAG+AGG + chr4_3:64545465-64545484 Msa0655690:CDS 50.0%
! CAGGCTGCATTGTTGTTGCT+TGG - chr4_3:64545509-64545528 None:intergenic 50.0%
!!! TCAGGTGGTTTTGGAAGCAC+TGG - chr4_3:64545612-64545631 None:intergenic 50.0%
! TGGTGGTGATGAGAAGTGGA+AGG - chr4_3:64545687-64545706 None:intergenic 50.0%
TCATTCTGCTTCCCCTTCTG+TGG - chr4_3:64546177-64546196 None:intergenic 50.0%
AGGTACAGTACAGCTGGTGG+TGG - chr4_3:64543461-64543480 None:intergenic 55.0%
GTGAGGTACAGTACAGCTGG+TGG - chr4_3:64543464-64543483 None:intergenic 55.0%
GCAGTGAGGTACAGTACAGC+TGG - chr4_3:64543467-64543486 None:intergenic 55.0%
ATGTTACCTGGTGTGCCTGC+TGG - chr4_3:64543647-64543666 None:intergenic 55.0%
CATAATGATGAGGGGGTGGG+TGG - chr4_3:64544667-64544686 None:intergenic 55.0%
CCTGCATAATGATGAGGGGG+TGG - chr4_3:64544671-64544690 None:intergenic 55.0%
CCACCCCCTCATCATTATGC+AGG + chr4_3:64544668-64544687 Msa0655690:intron 55.0%
ATGTCCTCAGCCACCACAGA+AGG + chr4_3:64546161-64546180 Msa0655690:CDS 55.0%
TGTCCTCAGCCACCACAGAA+GGG + chr4_3:64546162-64546181 Msa0655690:CDS 55.0%
TTCTGCTTCCCCTTCTGTGG+TGG - chr4_3:64546174-64546193 None:intergenic 55.0%
AGAAGACCAGCAGGCACACC+AGG + chr4_3:64543638-64543657 Msa0655690:CDS 60.0%
GTCCTCAGCCACCACAGAAG+GGG + chr4_3:64546163-64546182 Msa0655690:CDS 60.0%
TTCCCCTTCTGTGGTGGCTG+AGG - chr4_3:64546168-64546187 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 64543230 64546433 64543230 ID=Msa0655690;Name=Msa0655690
chr4_3 mRNA 64543230 64546433 64543230 ID=Msa0655690-mRNA-1;Parent=Msa0655690;Name=Msa0655690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=321|1|1|1|1|1|3|237|421
chr4_3 exon 64543230 64543659 64543230 ID=Msa0655690-mRNA-1:exon:18236;Parent=Msa0655690-mRNA-1
chr4_3 exon 64543738 64544140 64543738 ID=Msa0655690-mRNA-1:exon:18237;Parent=Msa0655690-mRNA-1
chr4_3 exon 64545443 64546433 64545443 ID=Msa0655690-mRNA-1:exon:18238;Parent=Msa0655690-mRNA-1
chr4_3 five_prime_UTR 64543230 64543550 64543230 ID=Msa0655690-mRNA-1:five_prime_utr;Parent=Msa0655690-mRNA-1
chr4_3 CDS 64543551 64543659 64543551 ID=Msa0655690-mRNA-1:cds;Parent=Msa0655690-mRNA-1
chr4_3 CDS 64543738 64544140 64543738 ID=Msa0655690-mRNA-1:cds;Parent=Msa0655690-mRNA-1
chr4_3 CDS 64545443 64546196 64545443 ID=Msa0655690-mRNA-1:cds;Parent=Msa0655690-mRNA-1
chr4_3 three_prime_UTR 64546197 64546433 64546197 ID=Msa0655690-mRNA-1:three_prime_utr;Parent=Msa0655690-mRNA-1
Gene Sequence

>Msa0655690

ATGTTAGATAACACAGTTAATTCCTCTTCTGATGCCACTACTGCTTTTGCATTATCAGAAAATGGGGGTGCTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTCTATCACCAAAGACTTTGTTAGAATCAGACAGATATGTTTGTGAGATCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTTCAAATGCATAGAAGAAGACACAAAGTGCCATGGAAATTGTTGAAAAGAGAAACAACACAAGGATTAAAAAAGAGAGTATTTGTTTGTCCAGAACCAAGTTGTTTGCATCATGATCCATGTCATGCACTAGGTGACCTTGTTGGAATCAAGAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGACAAATGCAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCACATATCAAAACATGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGACGCATGCACAATCAGAGGAAAGCACCAACCAGAGTTCCAAGCAACAACAATGCAGCCTGCATGTTCTTCTAGAACTGCTTCAAGCACAAGTCCATCTAGTGAGGCAAATTTTAGTATATCAGCCCCATTACAAGGATTACCAGTGCTTCCAAAACCACCTGATAAACCATTATCAGCACCTACCTTGTTAACTAATTCAGATACACATAACAAGCCTTCCACTTCTCATCACCACCATAACTTAGAACTTCAACTCTTACCTTCCTCTATAAACCCTCAAGTAGAAAAACCAAATTCAAACGATCAAAACTACGAAACACACTTGAAACTTTCAATAGGAAATAATGAGTCAGAGAAACAAAGGAATGATGTATCCACATTGGAACTAGCAAGTTTGAAAGAGTTTACTAGTGAGGAGCTAAAGTTGGCAATGACAGAAAAGGCTTATGCAGAAGAAGCTAGAAAAGAAGCTAAACGTCAAATTGAGATAGCTGAAGTTGAGTTTGAAAATGCTAAAAGGATAAGAAAACAAGCACAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTATTAAGAAGATAAGTAACACTGTTATGGAAGTAACATGCCAAGCTTGTAAGCAACAGTTTCAATCTTCAACTTCTGGTGTTCCATCAGAAGAAACATCCATTGTTATGGGTTACATGTCCTCAGCCACCACAGAAGGGGAAGCAGAATGA

Protein sequence

>Msa0655690

MLDNTVNSSSDATTAFALSENGGANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRGKHQPEFQATTMQPACSSRTASSTSPSSEANFSISAPLQGLPVLPKPPDKPLSAPTLLTNSDTHNKPSTSHHHHNLELQLLPSSINPQVEKPNSNDQNYETHLKLSIGNNESEKQRNDVSTLELASLKEFTSEELKLAMTEKAYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAIKKISNTVMEVTCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE*