AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616220 MtrunA17_Chr8g0375521 98.812 421 5 0 1 421 1 421 0.0 868
Msa0616220 MtrunA17_Chr6g0479921 58.499 453 126 11 16 418 17 457 3.65e-170 485
Msa0616220 MtrunA17_Chr1g0181381 64.103 156 55 1 27 182 38 192 1.62e-73 238
Msa0616220 MtrunA17_Chr1g0185121 65.385 156 53 1 27 182 40 194 3.71e-73 236
Msa0616220 MtrunA17_Chr1g0210821 45.669 254 133 4 30 280 47 298 7.28e-73 238
Msa0616220 MtrunA17_Chr7g0263941 59.116 181 66 3 8 182 9 187 1.05e-72 233
Msa0616220 MtrunA17_Chr8g0342421 64.103 156 54 2 27 182 62 215 4.92e-72 235
Msa0616220 MtrunA17_Chr8g0373541 57.143 189 67 4 2 182 4 186 1.37e-71 234
Msa0616220 MtrunA17_Chr2g0330171 63.462 156 55 2 27 182 46 199 2.84e-71 231
Msa0616220 MtrunA17_Chr2g0326381 62.179 156 58 1 27 182 32 186 3.98e-71 229
Msa0616220 MtrunA17_Chr1g0191991 64.744 156 53 2 27 182 63 216 6.79e-71 232
Msa0616220 MtrunA17_Chr1g0151351 61.392 158 60 1 27 184 41 197 1.01e-70 229
Msa0616220 MtrunA17_Chr4g0040571 64.103 156 54 2 27 182 39 192 2.78e-70 230
Msa0616220 MtrunA17_Chr1g0199101 60.897 156 59 2 27 182 47 200 3.40e-69 228
Msa0616220 MtrunA17_Chr4g0029521 60.256 156 61 1 27 182 38 192 3.97e-69 227
Msa0616220 MtrunA17_Chr1g0162971 59.615 156 61 2 27 182 41 194 3.49e-68 223
Msa0616220 MtrunA17_Chr1g0163001 61.538 156 58 2 27 182 43 196 3.94e-68 225
Msa0616220 MtrunA17_Chr7g0268961 67.123 146 46 2 37 182 32 175 4.29e-68 224
Msa0616220 MtrunA17_Chr3g0141431 58.974 156 63 1 27 182 22 176 3.93e-67 219
Msa0616220 MtrunA17_Chr2g0324991 65.414 133 44 2 38 170 3 133 8.81e-61 194
Msa0616220 MtrunA17_Chr2g0320341 33.974 156 89 4 36 178 224 378 7.30e-21 94.0
Msa0616220 MtrunA17_Chr3g0123941 37.107 159 80 6 33 178 114 265 2.95e-19 88.2
Msa0616220 MtrunA17_Chr8g0382121 35.714 154 88 5 35 178 104 256 2.27e-18 85.5
Msa0616220 MtrunA17_Chr1g0200421 32.215 149 89 5 41 178 236 383 5.14e-17 83.2
Msa0616220 MtrunA17_Chr4g0057391 34.884 86 56 0 311 396 58 143 9.38e-15 71.2
Msa0616220 MtrunA17_Chr8g0352011 32.394 142 85 5 48 181 171 309 2.96e-13 70.5
Msa0616220 MtrunA17_Chr1g0173841 29.891 184 106 7 3 178 187 355 3.02e-13 70.9
Msa0616220 MtrunA17_Chr7g0258011 30.986 142 87 5 48 181 181 319 7.05e-13 69.3
Msa0616220 MtrunA17_Chr4g0026521 30.935 139 85 5 48 178 123 258 7.85e-12 65.9
Msa0616220 MtrunA17_Chr1g0198651 27.374 179 114 6 15 181 74 248 3.15e-11 63.9
Msa0616220 MtrunA17_Chr2g0321291 30.216 139 86 5 48 178 138 273 3.30e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616220 AT2G01940.1 57.482 421 151 9 17 421 34 442 1.29e-164 470
Msa0616220 AT2G01940.3 56.738 423 152 11 17 421 34 443 4.71e-159 456
Msa0616220 AT1G68130.1 56.553 412 132 10 21 419 34 411 9.59e-150 431
Msa0616220 AT1G25250.3 53.846 429 137 10 3 421 8 385 1.27e-145 420
Msa0616220 AT1G25250.1 54.315 394 120 9 37 421 20 362 5.50e-135 392
Msa0616220 AT2G01940.2 54.247 365 139 9 73 421 1 353 4.54e-127 371
Msa0616220 AT1G68130.2 52.113 355 132 8 73 419 1 325 4.60e-113 335
Msa0616220 AT1G25250.2 50.000 358 119 9 73 421 1 307 2.35e-106 317
Msa0616220 AT3G50700.1 56.757 185 74 3 2 182 5 187 6.66e-72 233
Msa0616220 AT5G66730.1 57.219 187 68 4 2 182 5 185 7.27e-71 232
Msa0616220 AT4G02670.2 49.569 232 95 4 27 243 55 279 3.06e-70 227
Msa0616220 AT4G02670.1 49.569 232 95 4 27 243 53 277 3.51e-70 227
Msa0616220 AT1G55110.3 61.538 156 59 1 27 182 63 217 9.93e-70 228
Msa0616220 AT1G55110.1 61.538 156 59 1 27 182 63 217 9.93e-70 228
Msa0616220 AT1G55110.2 61.538 156 59 1 27 182 63 217 9.93e-70 228
Msa0616220 AT3G45260.2 55.747 174 76 1 27 200 39 211 1.03e-69 227
Msa0616220 AT3G45260.1 55.747 174 76 1 27 200 39 211 1.03e-69 227
Msa0616220 AT3G13810.6 62.821 156 57 1 27 182 51 205 2.80e-69 227
Msa0616220 AT3G13810.5 62.821 156 57 1 27 182 65 219 3.48e-69 228
Msa0616220 AT3G13810.4 62.821 156 57 1 27 182 70 224 3.52e-69 228
Msa0616220 AT3G13810.1 62.821 156 57 1 27 182 70 224 3.52e-69 228
Msa0616220 AT5G60470.2 54.098 183 83 1 27 209 44 225 3.58e-69 226
Msa0616220 AT5G60470.3 54.098 183 83 1 27 209 40 221 3.92e-69 226
Msa0616220 AT2G02080.1 55.307 179 75 3 27 202 54 230 4.19e-69 228
Msa0616220 AT2G02080.4 55.307 179 75 3 27 202 54 230 4.19e-69 228
Msa0616220 AT2G02080.5 55.307 179 75 3 27 202 54 230 4.19e-69 228
Msa0616220 AT2G02080.3 55.307 179 75 3 27 202 54 230 4.19e-69 228
Msa0616220 AT5G03150.1 61.538 156 59 1 27 182 53 207 5.65e-69 227
Msa0616220 AT1G14580.1 58.974 156 62 2 27 182 53 206 2.65e-68 224
Msa0616220 AT1G14580.2 58.974 156 62 2 27 182 53 206 2.65e-68 224
Msa0616220 AT1G03840.1 63.462 156 55 2 27 182 41 194 3.00e-68 225
Msa0616220 AT1G14580.3 58.974 156 62 2 27 182 67 220 3.58e-68 224
Msa0616220 AT2G02070.2 61.538 156 58 2 27 182 52 205 1.05e-67 226
Msa0616220 AT2G02070.1 61.538 156 58 2 27 182 52 205 1.05e-67 226
Msa0616220 AT5G44160.1 49.302 215 97 5 27 236 37 244 2.20e-66 219
Msa0616220 AT3G13810.3 64.138 145 51 1 38 182 68 211 7.50e-65 216
Msa0616220 AT5G60470.1 54.070 172 78 1 38 209 46 216 8.53e-65 214
Msa0616220 AT3G13810.2 64.138 145 51 1 38 182 82 225 9.65e-65 216
Msa0616220 AT1G03840.2 62.179 156 55 3 27 182 41 192 1.02e-64 216
Msa0616220 AT5G44160.2 49.268 205 92 5 37 236 8 205 5.39e-63 209
Msa0616220 AT2G02080.6 53.205 156 68 3 51 203 1 154 2.25e-56 192
Msa0616220 AT2G02080.2 53.205 156 68 3 51 203 1 154 2.25e-56 192
Msa0616220 AT5G22890.1 32.335 167 94 7 26 178 190 351 6.33e-17 82.4
Msa0616220 AT1G34370.3 29.231 195 119 7 36 216 14 203 1.12e-16 80.5
Msa0616220 AT1G34370.2 29.231 195 119 7 36 216 224 413 1.23e-16 82.4
Msa0616220 AT1G34370.1 29.231 195 119 7 36 216 224 413 1.23e-16 82.4
Msa0616220 AT3G48550.1 30.058 173 90 5 226 393 11 157 7.67e-15 72.4
Msa0616220 AT3G57670.1 30.986 142 87 5 48 181 209 347 4.65e-12 67.8

Find 95 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATGCATTTGAAGATTC+TGG 0.162069 4_2:+65964519 None:intergenic
AACAGGTTCTCTGAATTTAT+TGG 0.193173 4_2:-65964864 Msa0616220:five_prime_UTR
GTTCATATTCTTTATTAATA+TGG 0.201980 4_2:-65962022 Msa0616220:three_prime_UTR
TGTTTACTGTTTAGCACTTT+AGG 0.204011 4_2:-65961985 Msa0616220:three_prime_UTR
CAGTTTCAATCTTCAACTTC+TGG 0.249687 4_2:-65962264 Msa0616220:CDS
GTTTACTGTTTAGCACTTTA+GGG 0.252219 4_2:-65961984 Msa0616220:three_prime_UTR
AGGAATGAAGAGAGAGAAAA+AGG 0.277026 4_2:+65965003 None:intergenic
AATGGTTTATCAGGTGGTTT+TGG 0.294809 4_2:+65962747 None:intergenic
TTGAGTTTGAAAATGCTAAA+AGG 0.314430 4_2:-65962398 Msa0616220:CDS
AGAAGAAACATCCATTGTTA+TGG 0.316252 4_2:-65962232 Msa0616220:CDS
TCTGATTCTAACAAAGTCTT+TGG 0.339052 4_2:+65964584 None:intergenic
CTAAAATTTGCCTCACTAGA+TGG 0.342793 4_2:+65962804 None:intergenic
TTAATTTACAATAAGTCATA+TGG 0.369490 4_2:-65962118 Msa0616220:three_prime_UTR
GGTGCTGATAATGGTTTATC+AGG 0.373734 4_2:+65962738 None:intergenic
GAAGATAAGTAACACTGTTA+TGG 0.384215 4_2:-65962313 Msa0616220:CDS
TGATGCAAACAACTTGGTTC+TGG 0.390697 4_2:+65964422 None:intergenic
GAAGAAACATCCATTGTTAT+GGG 0.391163 4_2:-65962231 Msa0616220:CDS
AGAAAGATGATAGGTGATAA+TGG 0.391803 4_2:+65964960 None:intergenic
ACACACTTGAAACTTTCAAT+AGG 0.397442 4_2:-65962579 Msa0616220:CDS
ATTGTTGTTGCTTGGAACTC+TGG 0.397896 4_2:+65962867 None:intergenic
CAGGCTGCATTGTTGTTGCT+TGG 0.402771 4_2:+65962859 None:intergenic
AACAAGGTAGGTGCTGATAA+TGG 0.405416 4_2:+65962729 None:intergenic
ATGTTACCTGGTGTGCCTGC+TGG 0.413494 4_2:+65964707 None:intergenic
GAAACTGTTGCTTACAAGCT+TGG 0.418931 4_2:+65962280 None:intergenic
AATTAAAGATGATATATTGC+TGG 0.423127 4_2:-65962146 Msa0616220:three_prime_UTR
TGTATTACTTGAAGAAGAAA+AGG 0.432708 4_2:-65962044 Msa0616220:three_prime_UTR
TCTGGTCTCTTTGAAACCCT+TGG 0.440797 4_2:+65964537 None:intergenic
AGAGACACAACTTCAGCATC+TGG 0.455957 4_2:+65964611 None:intergenic
AGAGTTGAAGTTCTAAGTTA+TGG 0.456212 4_2:+65962661 None:intergenic
AAAGTTGGCAATGGCAGAAA+AGG 0.462255 4_2:-65962475 Msa0616220:CDS
ACAATGGATGTTTCTTCTGA+TGG 0.469771 4_2:+65962237 None:intergenic
TTCCCCTTCTGTGGTGGCTG+AGG 0.471434 4_2:+65962200 None:intergenic
GTACTGTACCTCACTGCAAC+AGG 0.481858 4_2:-65964881 Msa0616220:five_prime_UTR
TTCTGCTTCCCCTTCTGTGG+TGG 0.491783 4_2:+65962194 None:intergenic
TTGTTGCTTGGAACTCTGGT+TGG 0.493027 4_2:+65962871 None:intergenic
TTCGTTGAAAGAAAGATGAT+AGG 0.498716 4_2:+65964951 None:intergenic
AGTATATCAGCACCATTACA+AGG 0.504067 4_2:-65962783 Msa0616220:CDS
ACATAGTAATCATAAACAAT+GGG 0.505280 4_2:-65964342 Msa0616220:CDS
GTTTGTGAGATCTGTAACCA+AGG 0.507755 4_2:-65964554 Msa0616220:CDS
TACTAGTGAGGAGCTAAAGT+TGG 0.509569 4_2:-65962490 Msa0616220:CDS
GTGAAGTTTGTAATAGTGAG+TGG 0.510773 4_2:+65964915 None:intergenic
CAAAGAAAAGCTCGTGGCAA+AGG 0.515637 4_2:-65965090 Msa0616220:five_prime_UTR
AGAAGACCAGCAGGCACACC+AGG 0.525697 4_2:-65964713 Msa0616220:intron
AAACAAGCACAAGATGAACT+TGG 0.527243 4_2:-65962369 Msa0616220:CDS
ACTTGAGGGTTTATAGAGGA+AGG 0.528633 4_2:+65962636 None:intergenic
TCATTCTGCTTCCCCTTCTG+TGG 0.531823 4_2:+65962191 None:intergenic
AACATAGTAATCATAAACAA+TGG 0.531879 4_2:-65964343 Msa0616220:CDS
ATTAACTGTGTTATCTAACA+TGG 0.533403 4_2:+65964802 None:intergenic
TTTGAAAGAGTTTACTAGTG+AGG 0.537749 4_2:-65962502 Msa0616220:CDS
CATGATCCATGTCATGCACT+AGG 0.544901 4_2:-65964401 Msa0616220:CDS
TTCTACTTGAGGGTTTATAG+AGG 0.552798 4_2:+65962632 None:intergenic
TTTGTGAGATCTGTAACCAA+GGG 0.553552 4_2:-65964553 Msa0616220:CDS
GCTGATAATGGTTTATCAGG+TGG 0.558635 4_2:+65962741 None:intergenic
GTTGAAGTTCTAAGTTATGG+TGG 0.560774 4_2:+65962664 None:intergenic
ATGTCCTCAGCCACCACAGA+AGG 0.565952 4_2:-65962204 Msa0616220:CDS
GGATCATGATGCAAACAACT+TGG 0.569323 4_2:+65964416 None:intergenic
AGAGGACATTCGTGTGATTG+TGG 0.573870 4_2:-65964248 Msa0616220:CDS
CATGCACTAGGTGACCTTGT+TGG 0.575089 4_2:-65964389 Msa0616220:CDS
GTTATGGTGGTGATGAGAAG+TGG 0.575098 4_2:+65962677 None:intergenic
ACAATCACACGAATGTCCTC+TGG 0.575624 4_2:+65964250 None:intergenic
TGATAATGCAAAAGCAGTAG+TGG 0.577782 4_2:+65964766 None:intergenic
GTTATCTAACATGGGTGGAG+TGG 0.580079 4_2:+65964811 None:intergenic
TTTACTGTTTAGCACTTTAG+GGG 0.583128 4_2:-65961983 Msa0616220:three_prime_UTR
GCAGTGAGGTACAGTACAGC+TGG 0.584238 4_2:+65964887 None:intergenic
TGTCCTCAGCCACCACAGAA+GGG 0.586753 4_2:-65962203 Msa0616220:CDS
GTTTGTGACAAATGCAACAA+AGG 0.587309 4_2:-65964320 Msa0616220:CDS
GAAGAAGACACAAAGTGCCA+TGG 0.587753 4_2:-65964499 Msa0616220:CDS
TCTGAATTAGTTAACAAGGT+AGG 0.590831 4_2:+65962717 None:intergenic
AGCAGTAGTGGCATCAGAAG+AGG 0.593577 4_2:+65964778 None:intergenic
TGAAGTTTGTAATAGTGAGT+GGG 0.595307 4_2:+65964916 None:intergenic
ATAATGAGTCAGAGAAACAA+AGG 0.608502 4_2:-65962554 Msa0616220:CDS
AGCACTGGTAATCCTTGTAA+TGG 0.609934 4_2:+65962771 None:intergenic
CAAACTTGCTAGTTCCAATG+TGG 0.610019 4_2:+65962521 None:intergenic
TGTATCTGAATTAGTTAACA+AGG 0.612656 4_2:+65962713 None:intergenic
AAGGAATGATGTATCCACAT+TGG 0.613625 4_2:-65962535 Msa0616220:CDS
GTCCTCAGCCACCACAGAAG+GGG 0.615788 4_2:-65962202 Msa0616220:CDS
TGAGGAGCTAAAGTTGGCAA+TGG 0.615902 4_2:-65962484 Msa0616220:CDS
TTAACTGTGTTATCTAACAT+GGG 0.627719 4_2:+65964803 None:intergenic
CAAGACGCATGCACAATCAG+AGG 0.629083 4_2:-65962900 Msa0616220:CDS
ATCAAAACATGTGGTACCAG+AGG 0.630022 4_2:-65964266 Msa0616220:CDS
GCAGTTCTAGAAGAACATGC+AGG 0.635627 4_2:+65962840 None:intergenic
AGGTACAGTACAGCTGGTGG+TGG 0.644840 4_2:+65964893 None:intergenic
TCTCTGACAGCTATTGAACA+AGG 0.646656 4_2:-65961951 Msa0616220:three_prime_UTR
TGGTGGTGATGAGAAGTGGA+AGG 0.646826 4_2:+65962681 None:intergenic
AAAGCACATATCAAAACATG+TGG 0.657146 4_2:-65964275 Msa0616220:CDS
AAGCACAAGTCCATCTAGTG+AGG 0.660327 4_2:-65962814 Msa0616220:CDS
AATGTTTCTTGATTCCAACA+AGG 0.660532 4_2:+65964375 None:intergenic
AGGTCACCTAGTGCATGACA+TGG 0.667882 4_2:+65964395 None:intergenic
GGACATGTAACCCATAACAA+TGG 0.669538 4_2:+65962221 None:intergenic
ACTGTGTTATCTAACATGGG+TGG 0.682813 4_2:+65964806 None:intergenic
GCAAAGCAAAGAAAAGCTCG+TGG 0.689460 4_2:-65965096 Msa0616220:five_prime_UTR
TTTGCATTATCAGAAAATGG+GGG 0.689769 4_2:-65964755 Msa0616220:CDS
TTGAAAAGAGAAACAACACA+AGG 0.699162 4_2:-65964470 Msa0616220:CDS
TCAGAGAACCTGTTGCAGTG+AGG 0.725813 4_2:+65964873 None:intergenic
GTGAGGTACAGTACAGCTGG+TGG 0.778381 4_2:+65964890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATACTAATATTAATT+TGG + chr4_2:65963075-65963094 None:intergenic 10.0%
!!! ATATTTAAATAGTACTATTT+TGG - chr4_2:65963266-65963285 Msa0616220:intron 10.0%
!! ATCTAGTTATTAATATATAT+AGG - chr4_2:65963750-65963769 Msa0616220:intron 10.0%
!! GTTAAAAAATAAAACTAAGT+TGG + chr4_2:65962417-65962436 None:intergenic 15.0%
!!! CTCTCAAATATAAAATTTTA+GGG + chr4_2:65963164-65963183 None:intergenic 15.0%
!!! ACTCTCAAATATAAAATTTT+AGG + chr4_2:65963165-65963184 None:intergenic 15.0%
!! TGAGAATTTAATTACAAAAA+GGG + chr4_2:65963217-65963236 None:intergenic 15.0%
!! ATGAGAATTTAATTACAAAA+AGG + chr4_2:65963218-65963237 None:intergenic 15.0%
!! CTAATACTATTATAAGTTTA+TGG - chr4_2:65963443-65963462 Msa0616220:intron 15.0%
!! AATTAATTAATCAAAGATCT+GGG + chr4_2:65963634-65963653 None:intergenic 15.0%
!! AAATTAATTAATCAAAGATC+TGG + chr4_2:65963635-65963654 None:intergenic 15.0%
!! TTTCATCTTAAAAAATAACA+TGG + chr4_2:65963682-65963701 None:intergenic 15.0%
!! TTAATTTACAATAAGTCATA+TGG - chr4_2:65964954-65964973 Msa0616220:five_prime_UTR 15.0%
!! AAAGAAAGAAAAAAAGAATA+GGG + chr4_2:65964990-65965009 None:intergenic 15.0%
!! AAAAGAAAGAAAAAAAGAAT+AGG + chr4_2:65964991-65965010 None:intergenic 15.0%
!! GTTCATATTCTTTATTAATA+TGG - chr4_2:65965050-65965069 Msa0616220:five_prime_UTR 15.0%
!!! TATGAAATCAGCTTTTTTTA+AGG + chr4_2:65962038-65962057 None:intergenic 20.0%
!!! TATTTTTTAACCTTGTTTTG+TGG - chr4_2:65962426-65962445 Msa0616220:CDS 20.0%
!!! ATTTTTTAACCTTGTTTTGT+GGG - chr4_2:65962427-65962446 Msa0616220:CDS 20.0%
!! AACATAGTAATCATAAACAA+TGG - chr4_2:65962729-65962748 Msa0616220:CDS 20.0%
!! ACATAGTAATCATAAACAAT+GGG - chr4_2:65962730-65962749 Msa0616220:CDS 20.0%
!! AATTAAATTCTCATCTTCTT+AGG - chr4_2:65963224-65963243 Msa0616220:intron 20.0%
!! TATTGATAAAAAATGCAGAT+AGG + chr4_2:65963481-65963500 None:intergenic 20.0%
!!! TTTTATCAATAAACCAAACA+AGG - chr4_2:65963490-65963509 Msa0616220:intron 20.0%
!!! GTCAAATTATATTTTCATAC+AGG - chr4_2:65963915-65963934 Msa0616220:intron 20.0%
!! AGTCAATAACCATATATTAT+AGG + chr4_2:65964104-65964123 None:intergenic 20.0%
!! AATTAAAGATGATATATTGC+TGG - chr4_2:65964926-65964945 Msa0616220:five_prime_UTR 20.0%
! TTAACTGTGTTATCTAACAT+GGG + chr4_2:65962272-65962291 None:intergenic 25.0%
! ATTAACTGTGTTATCTAACA+TGG + chr4_2:65962273-65962292 None:intergenic 25.0%
!! CTTTTGCATTATCAGAAAAT+GGG - chr4_2:65962315-65962334 Msa0616220:CDS 25.0%
!! TTTTGCATTATCAGAAAATG+GGG - chr4_2:65962316-65962335 Msa0616220:CDS 25.0%
! TACAATAAAGATGGAAAACT+TGG + chr4_2:65962918-65962937 None:intergenic 25.0%
! GAAACTATCTACAATAAAGA+TGG + chr4_2:65962927-65962946 None:intergenic 25.0%
!! TTTTCTCTCTCTTTCTTTTT+CGG - chr4_2:65962955-65962974 Msa0616220:intron 25.0%
! TAGTAGCTAATTAATGATAC+TGG + chr4_2:65963418-65963437 None:intergenic 25.0%
!!! ATTCATTTTAGTACCTTGTT+TGG + chr4_2:65963506-65963525 None:intergenic 25.0%
! TAAGACAGAATGATCAAATA+GGG + chr4_2:65963568-65963587 None:intergenic 25.0%
! ATAAGACAGAATGATCAAAT+AGG + chr4_2:65963569-65963588 None:intergenic 25.0%
! TAAGATGAAATAGCTATAAC+AGG - chr4_2:65963692-65963711 Msa0616220:intron 25.0%
! TAATATATATAGGCCTTGAT+TGG - chr4_2:65963760-65963779 Msa0616220:intron 25.0%
! TGTATCTGAATTAGTTAACA+AGG + chr4_2:65964362-65964381 None:intergenic 25.0%
!!! AATTTGGTTTTTCTACTTGA+GGG + chr4_2:65964453-65964472 None:intergenic 25.0%
!!! TAGTTTTGATCGTTTGAATT+TGG + chr4_2:65964469-65964488 None:intergenic 25.0%
! TTGAGTTTGAAAATGCTAAA+AGG - chr4_2:65964674-65964693 Msa0616220:intron 25.0%
! TGTATTACTTGAAGAAGAAA+AGG - chr4_2:65965028-65965047 Msa0616220:five_prime_UTR 25.0%
! GATAATGGCAAAAAAACAGA+AGG + chr4_2:65962100-65962119 None:intergenic 30.0%
AGAAAGATGATAGGTGATAA+TGG + chr4_2:65962115-65962134 None:intergenic 30.0%
TTCGTTGAAAGAAAGATGAT+AGG + chr4_2:65962124-65962143 None:intergenic 30.0%
TGAAGTTTGTAATAGTGAGT+GGG + chr4_2:65962159-65962178 None:intergenic 30.0%
AACAGGTTCTCTGAATTTAT+TGG - chr4_2:65962208-65962227 Msa0616220:CDS 30.0%
! GCTTTTGCATTATCAGAAAA+TGG - chr4_2:65962314-65962333 Msa0616220:CDS 30.0%
TTTGCATTATCAGAAAATGG+GGG - chr4_2:65962317-65962336 Msa0616220:CDS 30.0%
AATTTGTGTGATATGTTACC+TGG + chr4_2:65962380-65962399 None:intergenic 30.0%
TCTGATTCTAACAAAGTCTT+TGG + chr4_2:65962491-65962510 None:intergenic 30.0%
TTCTATGCATTTGAAGATTC+TGG + chr4_2:65962556-65962575 None:intergenic 30.0%
! TCTCTTTTCAACAATTTCCA+TGG + chr4_2:65962593-65962612 None:intergenic 30.0%
TTGAAAAGAGAAACAACACA+AGG - chr4_2:65962602-65962621 Msa0616220:CDS 30.0%
AATGTTTCTTGATTCCAACA+AGG + chr4_2:65962700-65962719 None:intergenic 30.0%
AAAGCACATATCAAAACATG+TGG - chr4_2:65962797-65962816 Msa0616220:CDS 30.0%
CAATATGAGAAAGTGAAAGA+TGG + chr4_2:65962886-65962905 None:intergenic 30.0%
GTTCATCATTCATCAAATTC+AGG - chr4_2:65963010-65963029 Msa0616220:intron 30.0%
! CAATTGACTGTGTTTGTTAA+CGG - chr4_2:65963046-65963065 Msa0616220:intron 30.0%
!! GAAGACTTAATTTGTACTAG+TGG - chr4_2:65963539-65963558 Msa0616220:intron 30.0%
ACAAACTGTTTATCCAATCA+AGG + chr4_2:65963776-65963795 None:intergenic 30.0%
! TTTTTACATGCTCTCTCAAA+CGG - chr4_2:65964025-65964044 Msa0616220:intron 30.0%
CCATATATTATAGGTCTGTT+TGG + chr4_2:65964095-65964114 None:intergenic 30.0%
CCAAACAGACCTATAATATA+TGG - chr4_2:65964092-65964111 Msa0616220:intron 30.0%
TTACATTTGCCCTTTGATTA+GGG - chr4_2:65964129-65964148 Msa0616220:intron 30.0%
TCTGAATTAGTTAACAAGGT+AGG + chr4_2:65964358-65964377 None:intergenic 30.0%
!! AGAGTTGAAGTTCTAAGTTA+TGG + chr4_2:65964414-65964433 None:intergenic 30.0%
!!! GAATTTGGTTTTTCTACTTG+AGG + chr4_2:65964454-65964473 None:intergenic 30.0%
ACACACTTGAAACTTTCAAT+AGG - chr4_2:65964493-65964512 Msa0616220:CDS 30.0%
ATAATGAGTCAGAGAAACAA+AGG - chr4_2:65964518-65964537 Msa0616220:CDS 30.0%
TTTGAAAGAGTTTACTAGTG+AGG - chr4_2:65964570-65964589 Msa0616220:CDS 30.0%
GAAGATAAGTAACACTGTTA+TGG - chr4_2:65964759-65964778 Msa0616220:CDS 30.0%
AGAAGAAACATCCATTGTTA+TGG - chr4_2:65964840-65964859 Msa0616220:five_prime_UTR 30.0%
GAAGAAACATCCATTGTTAT+GGG - chr4_2:65964841-65964860 Msa0616220:five_prime_UTR 30.0%
TGTTTACTGTTTAGCACTTT+AGG - chr4_2:65965087-65965106 Msa0616220:five_prime_UTR 30.0%
GTTTACTGTTTAGCACTTTA+GGG - chr4_2:65965088-65965107 Msa0616220:five_prime_UTR 30.0%
TTTACTGTTTAGCACTTTAG+GGG - chr4_2:65965089-65965108 Msa0616220:five_prime_UTR 30.0%
AGGAATGAAGAGAGAGAAAA+AGG + chr4_2:65962072-65962091 None:intergenic 35.0%
CAAAAAAACAGAAGGAGGAA+AGG + chr4_2:65962092-65962111 None:intergenic 35.0%
AATGGCAAAAAAACAGAAGG+AGG + chr4_2:65962097-65962116 None:intergenic 35.0%
GTGAAGTTTGTAATAGTGAG+TGG + chr4_2:65962160-65962179 None:intergenic 35.0%
! TGATAATGCAAAAGCAGTAG+TGG + chr4_2:65962309-65962328 None:intergenic 35.0%
AAAAGAAAAAGAAGACCAGC+AGG - chr4_2:65962350-65962369 Msa0616220:CDS 35.0%
TTTGTGAGATCTGTAACCAA+GGG - chr4_2:65962519-65962538 Msa0616220:CDS 35.0%
GTTTGTGACAAATGCAACAA+AGG - chr4_2:65962752-65962771 Msa0616220:CDS 35.0%
CGTTAACAAACACAGTCAAT+TGG + chr4_2:65963048-65963067 None:intergenic 35.0%
!!! ATTTTAGGGTTTGACTTCCT+AGG + chr4_2:65963150-65963169 None:intergenic 35.0%
!! TTAATGATACTGGCTCTTAC+AGG + chr4_2:65963408-65963427 None:intergenic 35.0%
GTTACATTTGCCCTTTGATT+AGG - chr4_2:65964128-65964147 Msa0616220:intron 35.0%
CTAAAATTTGCCTCACTAGA+TGG + chr4_2:65964271-65964290 None:intergenic 35.0%
AGTATATCAGCACCATTACA+AGG - chr4_2:65964289-65964308 Msa0616220:CDS 35.0%
! AATGGTTTATCAGGTGGTTT+TGG + chr4_2:65964328-65964347 None:intergenic 35.0%
!! GTTGAAGTTCTAAGTTATGG+TGG + chr4_2:65964411-65964430 None:intergenic 35.0%
TTCTACTTGAGGGTTTATAG+AGG + chr4_2:65964443-65964462 None:intergenic 35.0%
AAGGAATGATGTATCCACAT+TGG - chr4_2:65964537-65964556 Msa0616220:CDS 35.0%
AAACAAGCACAAGATGAACT+TGG - chr4_2:65964703-65964722 Msa0616220:intron 35.0%
CAGTTTCAATCTTCAACTTC+TGG - chr4_2:65964808-65964827 Msa0616220:exon 35.0%
ACAATGGATGTTTCTTCTGA+TGG + chr4_2:65964838-65964857 None:intergenic 35.0%
ACTGTGTTATCTAACATGGG+TGG + chr4_2:65962269-65962288 None:intergenic 40.0%
CTAAACACACCCACAAAACA+AGG + chr4_2:65962439-65962458 None:intergenic 40.0%
GTTTGTGAGATCTGTAACCA+AGG - chr4_2:65962518-65962537 Msa0616220:CDS 40.0%
TGATGCAAACAACTTGGTTC+TGG + chr4_2:65962653-65962672 None:intergenic 40.0%
GGATCATGATGCAAACAACT+TGG + chr4_2:65962659-65962678 None:intergenic 40.0%
ATCAAAACATGTGGTACCAG+AGG - chr4_2:65962806-65962825 Msa0616220:CDS 40.0%
AAGAAAGCAGAACACAAACC+TGG + chr4_2:65962861-65962880 None:intergenic 40.0%
AAAGCCTGCATAATGATGAG+GGG + chr4_2:65963377-65963396 None:intergenic 40.0%
CAAAGCCTGCATAATGATGA+GGG + chr4_2:65963378-65963397 None:intergenic 40.0%
CAAACGGTTCAACAGTTCTT+AGG - chr4_2:65964041-65964060 Msa0616220:intron 40.0%
ACAGTTCTTAGGACTGTAGT+AGG - chr4_2:65964052-65964071 Msa0616220:intron 40.0%
AACTCTCCACCCTAATCAAA+GGG + chr4_2:65964141-65964160 None:intergenic 40.0%
AAACTCTCCACCCTAATCAA+AGG + chr4_2:65964142-65964161 None:intergenic 40.0%
! ATTGTTGTTGCTTGGAACTC+TGG + chr4_2:65964208-65964227 None:intergenic 40.0%
!! AGCACTGGTAATCCTTGTAA+TGG + chr4_2:65964304-65964323 None:intergenic 40.0%
!! GCTGATAATGGTTTATCAGG+TGG + chr4_2:65964334-65964353 None:intergenic 40.0%
!! GGTGCTGATAATGGTTTATC+AGG + chr4_2:65964337-65964356 None:intergenic 40.0%
!! AACAAGGTAGGTGCTGATAA+TGG + chr4_2:65964346-65964365 None:intergenic 40.0%
ACTTGAGGGTTTATAGAGGA+AGG + chr4_2:65964439-65964458 None:intergenic 40.0%
!! CAAACTTGCTAGTTCCAATG+TGG + chr4_2:65964554-65964573 None:intergenic 40.0%
TACTAGTGAGGAGCTAAAGT+TGG - chr4_2:65964582-65964601 Msa0616220:CDS 40.0%
AAAGTTGGCAATGGCAGAAA+AGG - chr4_2:65964597-65964616 Msa0616220:CDS 40.0%
! GAAACTGTTGCTTACAAGCT+TGG + chr4_2:65964795-65964814 None:intergenic 40.0%
GGACATGTAACCCATAACAA+TGG + chr4_2:65964854-65964873 None:intergenic 40.0%
GCAAAGCAAAGAAAAGCTCG+TGG - chr4_2:65961976-65961995 Msa0616220:three_prime_UTR 45.0%
CAAAGAAAAGCTCGTGGCAA+AGG - chr4_2:65961982-65962001 Msa0616220:three_prime_UTR 45.0%
GTTATCTAACATGGGTGGAG+TGG + chr4_2:65962264-65962283 None:intergenic 45.0%
AGAGACACAACTTCAGCATC+TGG + chr4_2:65962464-65962483 None:intergenic 45.0%
!! TCTGGTCTCTTTGAAACCCT+TGG + chr4_2:65962538-65962557 None:intergenic 45.0%
! GAAGAAGACACAAAGTGCCA+TGG - chr4_2:65962573-65962592 Msa0616220:CDS 45.0%
CATGATCCATGTCATGCACT+AGG - chr4_2:65962671-65962690 Msa0616220:CDS 45.0%
ACAATCACACGAATGTCCTC+TGG + chr4_2:65962825-65962844 None:intergenic 45.0%
AGAGGACATTCGTGTGATTG+TGG - chr4_2:65962824-65962843 Msa0616220:CDS 45.0%
! ATTGTGGTCGTGTGTTTTCC+AGG - chr4_2:65962840-65962859 Msa0616220:CDS 45.0%
! TAGGGTTTGACTTCCTAGGA+AGG + chr4_2:65963146-65963165 None:intergenic 45.0%
AAGCCTGCATAATGATGAGG+GGG + chr4_2:65963376-65963395 None:intergenic 45.0%
GCAAAGCCTGCATAATGATG+AGG + chr4_2:65963379-65963398 None:intergenic 45.0%
AGATCTGGGTCATGACTCAT+GGG + chr4_2:65963620-65963639 None:intergenic 45.0%
AAGATCTGGGTCATGACTCA+TGG + chr4_2:65963621-65963640 None:intergenic 45.0%
CATTTGCCCTTTGATTAGGG+TGG - chr4_2:65964132-65964151 Msa0616220:intron 45.0%
! TTGTTGCTTGGAACTCTGGT+TGG + chr4_2:65964204-65964223 None:intergenic 45.0%
!! GCAGTTCTAGAAGAACATGC+AGG + chr4_2:65964235-65964254 None:intergenic 45.0%
AAGCACAAGTCCATCTAGTG+AGG - chr4_2:65964258-65964277 Msa0616220:CDS 45.0%
! GTTATGGTGGTGATGAGAAG+TGG + chr4_2:65964398-65964417 None:intergenic 45.0%
TGAGGAGCTAAAGTTGGCAA+TGG - chr4_2:65964588-65964607 Msa0616220:CDS 45.0%
GTACTGTACCTCACTGCAAC+AGG - chr4_2:65962191-65962210 Msa0616220:CDS 50.0%
TCAGAGAACCTGTTGCAGTG+AGG + chr4_2:65962202-65962221 None:intergenic 50.0%
AGCAGTAGTGGCATCAGAAG+AGG + chr4_2:65962297-65962316 None:intergenic 50.0%
AGGTCACCTAGTGCATGACA+TGG + chr4_2:65962680-65962699 None:intergenic 50.0%
CATGCACTAGGTGACCTTGT+TGG - chr4_2:65962683-65962702 Msa0616220:CDS 50.0%
TCTTCTGCAGCTACCTTCCT+AGG - chr4_2:65963130-65963149 Msa0616220:intron 50.0%
ATAATGATGAGGGGGTGGGT+GGG + chr4_2:65963368-65963387 None:intergenic 50.0%
CTGCATAATGATGAGGGGGT+GGG + chr4_2:65963372-65963391 None:intergenic 50.0%
CAAGACGCATGCACAATCAG+AGG - chr4_2:65964172-65964191 Msa0616220:intron 50.0%
! CAGGCTGCATTGTTGTTGCT+TGG + chr4_2:65964216-65964235 None:intergenic 50.0%
!!! TCAGGTGGTTTTGGAAGCAC+TGG + chr4_2:65964319-65964338 None:intergenic 50.0%
! TGGTGGTGATGAGAAGTGGA+AGG + chr4_2:65964394-65964413 None:intergenic 50.0%
TCATTCTGCTTCCCCTTCTG+TGG + chr4_2:65964884-65964903 None:intergenic 50.0%
AGGTACAGTACAGCTGGTGG+TGG + chr4_2:65962182-65962201 None:intergenic 55.0%
GTGAGGTACAGTACAGCTGG+TGG + chr4_2:65962185-65962204 None:intergenic 55.0%
GCAGTGAGGTACAGTACAGC+TGG + chr4_2:65962188-65962207 None:intergenic 55.0%
ATGTTACCTGGTGTGCCTGC+TGG + chr4_2:65962368-65962387 None:intergenic 55.0%
CGTGTGAGTGAGTGTGTGTG+TGG - chr4_2:65962988-65963007 Msa0616220:intron 55.0%
CATAATGATGAGGGGGTGGG+TGG + chr4_2:65963369-65963388 None:intergenic 55.0%
CCTGCATAATGATGAGGGGG+TGG + chr4_2:65963373-65963392 None:intergenic 55.0%
CCACCCCCTCATCATTATGC+AGG - chr4_2:65963370-65963389 Msa0616220:intron 55.0%
ATGTCCTCAGCCACCACAGA+AGG - chr4_2:65964868-65964887 Msa0616220:five_prime_UTR 55.0%
TGTCCTCAGCCACCACAGAA+GGG - chr4_2:65964869-65964888 Msa0616220:five_prime_UTR 55.0%
TTCTGCTTCCCCTTCTGTGG+TGG + chr4_2:65964881-65964900 None:intergenic 55.0%
AGAAGACCAGCAGGCACACC+AGG - chr4_2:65962359-65962378 Msa0616220:CDS 60.0%
GTCCTCAGCCACCACAGAAG+GGG - chr4_2:65964870-65964889 Msa0616220:five_prime_UTR 60.0%
TTCCCCTTCTGTGGTGGCTG+AGG + chr4_2:65964875-65964894 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 65961951 65965143 65961951 ID=Msa0616220;Name=Msa0616220
chr4_2 mRNA 65961951 65965143 65961951 ID=Msa0616220-mRNA-1;Parent=Msa0616220;Name=Msa0616220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=321|1|1|1|1|1|3|240|421
chr4_2 exon 65961951 65962944 65961951 ID=Msa0616220-mRNA-1:exon:18739;Parent=Msa0616220-mRNA-1
chr4_2 exon 65964233 65964635 65964233 ID=Msa0616220-mRNA-1:exon:18738;Parent=Msa0616220-mRNA-1
chr4_2 exon 65964714 65965143 65964714 ID=Msa0616220-mRNA-1:exon:18737;Parent=Msa0616220-mRNA-1
chr4_2 five_prime_UTR 65964823 65965143 65964823 ID=Msa0616220-mRNA-1:five_prime_utr;Parent=Msa0616220-mRNA-1
chr4_2 CDS 65964714 65964822 65964714 ID=Msa0616220-mRNA-1:cds;Parent=Msa0616220-mRNA-1
chr4_2 CDS 65964233 65964635 65964233 ID=Msa0616220-mRNA-1:cds;Parent=Msa0616220-mRNA-1
chr4_2 CDS 65962191 65962944 65962191 ID=Msa0616220-mRNA-1:cds;Parent=Msa0616220-mRNA-1
chr4_2 three_prime_UTR 65961951 65962190 65961951 ID=Msa0616220-mRNA-1:three_prime_utr;Parent=Msa0616220-mRNA-1
Gene Sequence

>Msa0616220

ATGTTAGATAACACAGTTAATTCCTCTTCTGATGCCACTACTGCTTTTGCATTATCAGAAAATGGGGGTGCTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTCTATCACCAAAGACTTTGTTAGAATCAGACAGATATGTTTGTGAGATCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTTCAAATGCATAGAAGAAGACACAAAGTGCCATGGAAATTGTTGAAAAGAGAAACAACACAAGGATTAAAAAAGAGAGTATTTGTTTGTCCAGAACCAAGTTGTTTGCATCATGATCCATGTCATGCACTAGGTGACCTTGTTGGAATCAAGAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGACAAATGCAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCACATATCAAAACATGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGACGCATGCACAATCAGAGGAAAGCACCAACCAGAGTTCCAAGCAACAACAATGCAGCCTGCATGTTCTTCTAGAACTGCTTCAAGCACAAGTCCATCTAGTGAGGCAAATTTTAGTATATCAGCACCATTACAAGGATTACCAGTGCTTCCAAAACCACCTGATAAACCATTATCAGCACCTACCTTGTTAACTAATTCAGATACACAAAACAAGCCTTCCACTTCTCATCACCACCATAACTTAGAACTTCAACTCTTACCTTCCTCTATAAACCCTCAAGTAGAAAAACCAAATTCAAACGATCAAAACTACGAAACACACTTGAAACTTTCAATAGGAAATAATGAGTCAGAGAAACAAAGGAATGATGTATCCACATTGGAACTAGCAAGTTTGAAAGAGTTTACTAGTGAGGAGCTAAAGTTGGCAATGGCAGAAAAGGCTTATGCAGAAGAAGCTAGAAAAGAAGCTAAACGTCAAATTGAGATAGCTGAAGTTGAGTTTGAAAATGCTAAAAGGATAAGAAAACAAGCACAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTATTAAGAAGATAAGTAACACTGTTATGGAAGTAACATGCCAAGCTTGTAAGCAACAGTTTCAATCTTCAACTTCTGGTGTTCCATCAGAAGAAACATCCATTGTTATGGGTTACATGTCCTCAGCCACCACAGAAGGGGAAGCAGAATGA

Protein sequence

>Msa0616220

MLDNTVNSSSDATTAFALSENGGANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRGKHQPEFQATTMQPACSSRTASSTSPSSEANFSISAPLQGLPVLPKPPDKPLSAPTLLTNSDTQNKPSTSHHHHNLELQLLPSSINPQVEKPNSNDQNYETHLKLSIGNNESEKQRNDVSTLELASLKEFTSEELKLAMAEKAYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAIKKISNTVMEVTCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE*