Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655900 | XP_039684839.1 | 97.892 | 332 | 7 | 0 | 1 | 332 | 1 | 332 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655900 | sp|Q38909|XTH28_ARATH | 67.169 | 332 | 107 | 2 | 1 | 331 | 1 | 331 | 2.15e-167 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655900 | G8A358 | 97.892 | 332 | 7 | 0 | 1 | 332 | 1 | 332 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616430 | Msa0655900 | 0.865561 | 5.399375e-65 | -8.615850e-47 |
| Msa0655900 | Msa0699760 | 0.864078 | 1.574618e-64 | -8.615850e-47 |
| Msa0655900 | Msa1465750 | 0.823728 | 1.184949e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655900 | MtrunA17_Chr8g0375981 | 97.892 | 332 | 7 | 0 | 1 | 332 | 1 | 332 | 0.0 | 686 |
| Msa0655900 | MtrunA17_Chr1g0161951 | 77.429 | 319 | 70 | 2 | 6 | 323 | 7 | 324 | 0.0 | 534 |
| Msa0655900 | MtrunA17_Chr5g0410621 | 56.610 | 295 | 120 | 3 | 20 | 308 | 31 | 323 | 4.74e-124 | 359 |
| Msa0655900 | MtrunA17_Chr8g0382041 | 49.291 | 282 | 136 | 5 | 25 | 302 | 28 | 306 | 5.49e-96 | 288 |
| Msa0655900 | MtrunA17_Chr8g0365231 | 46.078 | 306 | 137 | 5 | 7 | 290 | 11 | 310 | 2.62e-90 | 272 |
| Msa0655900 | MtrunA17_Chr4g0028221 | 41.528 | 301 | 153 | 6 | 5 | 290 | 12 | 304 | 1.08e-72 | 227 |
| Msa0655900 | MtrunA17_Chr1g0180451 | 40.468 | 299 | 153 | 7 | 8 | 290 | 5 | 294 | 5.63e-67 | 212 |
| Msa0655900 | MtrunA17_Chr2g0327411 | 40.333 | 300 | 156 | 8 | 6 | 290 | 18 | 309 | 1.82e-65 | 209 |
| Msa0655900 | MtrunA17_Chr7g0264731 | 38.721 | 297 | 159 | 6 | 9 | 290 | 3 | 291 | 1.04e-62 | 201 |
| Msa0655900 | MtrunA17_Chr7g0252601 | 37.324 | 284 | 170 | 5 | 9 | 290 | 10 | 287 | 5.56e-61 | 196 |
| Msa0655900 | MtrunA17_Chr1g0206081 | 36.301 | 292 | 180 | 5 | 8 | 296 | 12 | 300 | 1.41e-60 | 196 |
| Msa0655900 | MtrunA17_Chr6g0461761 | 37.162 | 296 | 173 | 8 | 1 | 291 | 1 | 288 | 6.73e-59 | 191 |
| Msa0655900 | MtrunA17_Chr4g0023961 | 38.000 | 300 | 161 | 11 | 4 | 291 | 3 | 289 | 1.60e-58 | 190 |
| Msa0655900 | MtrunA17_Chr1g0206681 | 37.736 | 265 | 157 | 4 | 31 | 292 | 34 | 293 | 3.34e-58 | 189 |
| Msa0655900 | MtrunA17_Chr4g0072611 | 37.884 | 293 | 161 | 9 | 6 | 290 | 1 | 280 | 4.33e-58 | 189 |
| Msa0655900 | MtrunA17_Chr3g0096651 | 40.613 | 261 | 146 | 5 | 31 | 290 | 30 | 282 | 5.28e-58 | 189 |
| Msa0655900 | MtrunA17_Chr2g0323161 | 37.667 | 300 | 161 | 11 | 4 | 291 | 2 | 287 | 7.94e-58 | 188 |
| Msa0655900 | MtrunA17_Chr8g0340001 | 41.322 | 242 | 127 | 7 | 55 | 291 | 1 | 232 | 1.03e-57 | 186 |
| Msa0655900 | MtrunA17_Chr7g0252621 | 36.934 | 287 | 167 | 6 | 9 | 290 | 10 | 287 | 5.93e-57 | 186 |
| Msa0655900 | MtrunA17_Chr5g0443391 | 38.168 | 262 | 149 | 5 | 31 | 290 | 28 | 278 | 5.94e-57 | 186 |
| Msa0655900 | MtrunA17_Chr7g0252631 | 36.934 | 287 | 167 | 6 | 9 | 290 | 10 | 287 | 1.63e-56 | 185 |
| Msa0655900 | MtrunA17_Chr6g0461731 | 35.986 | 289 | 173 | 7 | 7 | 291 | 31 | 311 | 4.03e-56 | 185 |
| Msa0655900 | MtrunA17_Chr7g0258911 | 34.694 | 294 | 177 | 5 | 1 | 292 | 1 | 281 | 6.02e-56 | 183 |
| Msa0655900 | MtrunA17_Chr4g0071341 | 34.875 | 281 | 168 | 6 | 15 | 292 | 15 | 283 | 1.66e-54 | 179 |
| Msa0655900 | MtrunA17_Chr4g0072601 | 36.719 | 256 | 154 | 4 | 39 | 292 | 36 | 285 | 3.34e-54 | 179 |
| Msa0655900 | MtrunA17_Chr4g0054451 | 35.593 | 295 | 173 | 9 | 3 | 291 | 7 | 290 | 6.87e-54 | 178 |
| Msa0655900 | MtrunA17_Chr4g0054431 | 36.585 | 287 | 165 | 9 | 11 | 291 | 13 | 288 | 1.58e-53 | 177 |
| Msa0655900 | MtrunA17_Chr4g0072671 | 35.955 | 267 | 159 | 5 | 31 | 291 | 26 | 286 | 1.09e-51 | 172 |
| Msa0655900 | MtrunA17_Chr3g0122021 | 34.021 | 291 | 177 | 6 | 1 | 290 | 1 | 277 | 1.09e-51 | 172 |
| Msa0655900 | MtrunA17_Chr3g0122031 | 36.015 | 261 | 155 | 5 | 31 | 290 | 28 | 277 | 2.06e-51 | 171 |
| Msa0655900 | MtrunA17_Chr2g0299061 | 34.694 | 294 | 166 | 7 | 8 | 291 | 10 | 287 | 1.02e-50 | 170 |
| Msa0655900 | MtrunA17_Chr8g0377841 | 34.043 | 282 | 173 | 5 | 12 | 290 | 10 | 281 | 4.69e-50 | 168 |
| Msa0655900 | MtrunA17_Chr2g0303861 | 33.929 | 280 | 169 | 9 | 1 | 276 | 1 | 268 | 9.10e-50 | 167 |
| Msa0655900 | MtrunA17_Chr6g0486581 | 34.397 | 282 | 173 | 6 | 14 | 290 | 9 | 283 | 1.39e-49 | 167 |
| Msa0655900 | MtrunA17_Chr8g0389641 | 34.100 | 261 | 124 | 4 | 31 | 290 | 29 | 242 | 2.86e-45 | 154 |
| Msa0655900 | MtrunA17_Chr2g0303721 | 31.900 | 279 | 169 | 8 | 1 | 276 | 1 | 261 | 1.61e-43 | 151 |
| Msa0655900 | MtrunA17_Chr4g0072681 | 35.714 | 224 | 131 | 5 | 74 | 290 | 26 | 243 | 5.92e-43 | 148 |
| Msa0655900 | MtrunA17_Chr7g0235541 | 38.424 | 203 | 117 | 5 | 80 | 279 | 3 | 200 | 1.04e-41 | 144 |
| Msa0655900 | MtrunA17_Chr8g0390201 | 36.842 | 190 | 113 | 4 | 106 | 290 | 22 | 209 | 1.46e-37 | 133 |
| Msa0655900 | MtrunA17_Chr8g0350711 | 36.158 | 177 | 101 | 6 | 52 | 226 | 53 | 219 | 6.66e-20 | 87.0 |
| Msa0655900 | MtrunA17_Chr4g0072641 | 29.921 | 127 | 74 | 2 | 166 | 291 | 37 | 149 | 1.79e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0655900 | AT1G14720.1 | 67.169 | 332 | 107 | 2 | 1 | 331 | 1 | 331 | 2.19e-168 | 472 |
| Msa0655900 | AT2G01850.1 | 68.278 | 331 | 98 | 5 | 6 | 330 | 4 | 333 | 1.88e-167 | 469 |
| Msa0655900 | AT1G32170.1 | 56.090 | 312 | 129 | 4 | 2 | 309 | 5 | 312 | 3.06e-124 | 360 |
| Msa0655900 | AT4G18990.1 | 51.780 | 309 | 131 | 4 | 25 | 319 | 34 | 338 | 6.33e-110 | 324 |
| Msa0655900 | AT1G10550.1 | 46.691 | 272 | 130 | 4 | 30 | 290 | 42 | 309 | 2.93e-83 | 254 |
| Msa0655900 | AT4G18990.2 | 51.055 | 237 | 98 | 4 | 97 | 319 | 32 | 264 | 8.40e-82 | 250 |
| Msa0655900 | AT4G13090.1 | 44.138 | 290 | 147 | 8 | 11 | 293 | 10 | 291 | 1.11e-74 | 232 |
| Msa0655900 | AT4G13080.1 | 39.333 | 300 | 165 | 6 | 4 | 293 | 2 | 294 | 6.39e-72 | 225 |
| Msa0655900 | AT3G44990.1 | 37.458 | 299 | 165 | 6 | 6 | 290 | 3 | 293 | 1.58e-64 | 206 |
| Msa0655900 | AT3G25050.1 | 37.584 | 298 | 169 | 9 | 1 | 290 | 1 | 289 | 5.05e-64 | 204 |
| Msa0655900 | AT2G36870.1 | 39.344 | 305 | 162 | 6 | 1 | 290 | 1 | 297 | 1.48e-63 | 204 |
| Msa0655900 | AT5G13870.2 | 38.408 | 289 | 163 | 7 | 6 | 290 | 10 | 287 | 2.08e-63 | 203 |
| Msa0655900 | AT5G13870.1 | 38.408 | 289 | 163 | 7 | 6 | 290 | 10 | 287 | 2.08e-63 | 203 |
| Msa0655900 | AT5G13870.3 | 38.408 | 289 | 163 | 7 | 6 | 290 | 10 | 287 | 2.08e-63 | 203 |
| Msa0655900 | AT1G11545.1 | 38.176 | 296 | 174 | 7 | 4 | 294 | 12 | 303 | 8.94e-63 | 202 |
| Msa0655900 | AT2G06850.1 | 38.276 | 290 | 170 | 6 | 3 | 290 | 8 | 290 | 9.62e-60 | 194 |
| Msa0655900 | AT4G37800.1 | 37.847 | 288 | 158 | 9 | 9 | 290 | 17 | 289 | 1.84e-57 | 188 |
| Msa0655900 | AT4G25810.1 | 36.913 | 298 | 164 | 8 | 1 | 291 | 4 | 284 | 2.29e-57 | 187 |
| Msa0655900 | AT5G65730.1 | 36.364 | 286 | 171 | 7 | 6 | 290 | 15 | 290 | 3.30e-57 | 187 |
| Msa0655900 | AT5G57550.1 | 37.413 | 286 | 165 | 8 | 10 | 290 | 6 | 282 | 7.21e-57 | 186 |
| Msa0655900 | AT2G06850.2 | 42.918 | 233 | 125 | 5 | 60 | 290 | 4 | 230 | 5.93e-56 | 182 |
| Msa0655900 | AT5G57560.1 | 36.333 | 300 | 164 | 9 | 1 | 291 | 1 | 282 | 8.07e-56 | 183 |
| Msa0655900 | AT2G14620.1 | 36.644 | 292 | 171 | 6 | 6 | 292 | 14 | 296 | 1.21e-54 | 181 |
| Msa0655900 | AT4G30270.1 | 35.789 | 285 | 157 | 6 | 9 | 291 | 6 | 266 | 1.96e-54 | 179 |
| Msa0655900 | AT5G48070.1 | 36.620 | 284 | 166 | 7 | 10 | 290 | 9 | 281 | 1.39e-53 | 177 |
| Msa0655900 | AT4G30290.1 | 39.437 | 284 | 158 | 7 | 10 | 290 | 4 | 276 | 1.97e-53 | 177 |
| Msa0655900 | AT4G30280.1 | 39.085 | 284 | 159 | 7 | 10 | 290 | 9 | 281 | 2.32e-53 | 177 |
| Msa0655900 | AT4G14130.1 | 36.525 | 282 | 165 | 6 | 11 | 290 | 15 | 284 | 4.32e-53 | 176 |
| Msa0655900 | AT4G03210.1 | 37.121 | 264 | 154 | 6 | 31 | 290 | 29 | 284 | 4.49e-53 | 176 |
| Msa0655900 | AT3G23730.1 | 35.338 | 266 | 162 | 4 | 30 | 290 | 26 | 286 | 4.57e-53 | 176 |
| Msa0655900 | AT5G57530.1 | 35.955 | 267 | 161 | 6 | 30 | 293 | 26 | 285 | 3.66e-52 | 174 |
| Msa0655900 | AT5G57540.1 | 35.206 | 267 | 163 | 6 | 30 | 293 | 25 | 284 | 1.59e-51 | 172 |
| Msa0655900 | AT2G18800.1 | 35.125 | 279 | 154 | 5 | 31 | 291 | 28 | 297 | 3.97e-51 | 172 |
| Msa0655900 | AT1G65310.1 | 39.453 | 256 | 142 | 6 | 39 | 291 | 37 | 282 | 4.35e-51 | 171 |
| Msa0655900 | AT1G65310.2 | 39.453 | 256 | 142 | 6 | 39 | 291 | 59 | 304 | 6.38e-51 | 171 |
| Msa0655900 | AT4G28850.1 | 33.898 | 295 | 177 | 7 | 6 | 290 | 1 | 287 | 8.72e-50 | 168 |
| Msa0655900 | AT4G03210.2 | 37.302 | 252 | 147 | 6 | 44 | 290 | 11 | 256 | 1.16e-49 | 167 |
| Msa0655900 | AT2G14620.2 | 39.831 | 236 | 130 | 5 | 62 | 292 | 18 | 246 | 1.42e-49 | 166 |
| Msa0655900 | AT4G25820.1 | 34.043 | 282 | 173 | 5 | 13 | 292 | 17 | 287 | 2.75e-48 | 164 |
| Msa0655900 | AT2G14620.3 | 40.088 | 227 | 124 | 5 | 71 | 292 | 16 | 235 | 5.15e-48 | 162 |
| Msa0655900 | AT3G48580.1 | 33.471 | 242 | 134 | 10 | 53 | 290 | 55 | 273 | 7.99e-35 | 128 |
| Msa0655900 | AT3G48580.3 | 33.761 | 234 | 128 | 10 | 61 | 290 | 4 | 214 | 5.02e-33 | 122 |
| Msa0655900 | AT2G36870.2 | 38.889 | 180 | 93 | 3 | 1 | 165 | 1 | 178 | 2.47e-32 | 119 |
| Msa0655900 | AT3G48580.2 | 29.752 | 242 | 123 | 11 | 53 | 290 | 55 | 253 | 3.22e-21 | 91.7 |
Find 113 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATTCAGACCAATGTTTA+TGG | 0.234371 | 4_3:-64856294 | Msa0655900:CDS |
| ATCTAGAAATTTACCTATTA+CGG | 0.254701 | 4_3:-64857144 | Msa0655900:CDS |
| TAGGACAAGGTCGGAGAATT+TGG | 0.260987 | 4_3:+64855159 | None:intergenic |
| TGACTCTGTATGCGACTATA+TGG | 0.266092 | 4_3:-64855249 | Msa0655900:CDS |
| GTCCGTGTAACTTCTCTAAT+AGG | 0.286936 | 4_3:+64855307 | None:intergenic |
| TCTCATGATATTTACCTTCA+TGG | 0.300530 | 4_3:-64856908 | Msa0655900:CDS |
| GAAGGGTACACACCTTTGTT+TGG | 0.310448 | 4_3:-64857113 | Msa0655900:CDS |
| AAGAATAAAACAATACTATT+AGG | 0.310845 | 4_3:+64854462 | None:intergenic |
| GAAGTAATCACTCACATAAA+AGG | 0.334012 | 4_3:+64856829 | None:intergenic |
| ATTGAAAACCCTGAGGTATA+TGG | 0.338504 | 4_3:+64854562 | None:intergenic |
| AAGGGTACACACCTTTGTTT+GGG | 0.339045 | 4_3:-64857112 | Msa0655900:CDS |
| CCTTCATCAAAGGCCGTAAT+AGG | 0.340035 | 4_3:+64857131 | None:intergenic |
| ATTCATGGGTTATTCTCATA+TGG | 0.345426 | 4_3:-64857213 | Msa0655900:exon |
| AAATCAAAATGGAGAACTTC+AGG | 0.359114 | 4_3:-64855042 | Msa0655900:CDS |
| AGTTCCAAATCCATTCCTTC+TGG | 0.389842 | 4_3:-64855082 | Msa0655900:CDS |
| CTTACTGTTACGACAAAATC+AGG | 0.399238 | 4_3:-64855000 | Msa0655900:CDS |
| AACACCAGAAGGAATGGATT+TGG | 0.411428 | 4_3:+64855078 | None:intergenic |
| GATTAATTTCATCCTTGATT+CGG | 0.413783 | 4_3:-64854805 | Msa0655900:three_prime_UTR |
| TAGATAGAAAGAGAGAGGTT+TGG | 0.416524 | 4_3:+64857333 | None:intergenic |
| GAAACATTAGAGGCAAAGAT+TGG | 0.421060 | 4_3:-64856317 | Msa0655900:CDS |
| CCTATTACGGCCTTTGATGA+AGG | 0.421584 | 4_3:-64857131 | Msa0655900:CDS |
| TTCATCAATACAGTATTCTC+TGG | 0.426009 | 4_3:-64856206 | Msa0655900:CDS |
| CATGAGTTATTTAATGAAGT+AGG | 0.439554 | 4_3:-64854524 | Msa0655900:three_prime_UTR |
| CTGCCGCTGCCGAATGTGAC+AGG | 0.447195 | 4_3:+64854908 | None:intergenic |
| CTTAGCCTTTCAGCTTCTTG+TGG | 0.450432 | 4_3:+64854941 | None:intergenic |
| GAGGTATATGGTCTAAATAC+AGG | 0.451985 | 4_3:+64854574 | None:intergenic |
| TACAGAGTCATAGGCTTGGC+AGG | 0.452062 | 4_3:+64855262 | None:intergenic |
| CTCATGATATTTACCTTCAT+GGG | 0.454019 | 4_3:-64856907 | Msa0655900:CDS |
| TCTCTATACACCACGAAGAA+AGG | 0.459945 | 4_3:+64854751 | None:intergenic |
| CTTTCTTTAGATGAAAGAAC+AGG | 0.466457 | 4_3:-64857047 | Msa0655900:intron |
| TCTTTCCTCTCTGCCAATGC+TGG | 0.468353 | 4_3:+64856260 | None:intergenic |
| GTATTTAGACCATATACCTC+AGG | 0.468384 | 4_3:-64854571 | Msa0655900:three_prime_UTR |
| ATGTGTATAGTTCATACCTT+AGG | 0.468895 | 4_3:-64854655 | Msa0655900:three_prime_UTR |
| TTCTCCGACCTTGTCCTACA+TGG | 0.473548 | 4_3:-64855154 | Msa0655900:CDS |
| TCGGAGAATTTGGCAACATA+TGG | 0.479047 | 4_3:+64855169 | None:intergenic |
| ATAGTCGCATACAGAGTCAT+AGG | 0.480165 | 4_3:+64855253 | None:intergenic |
| CATCAGATTGGGCTACCAAT+GGG | 0.480813 | 4_3:-64855222 | Msa0655900:CDS |
| GATTCGGTTCGATTACCACC+TGG | 0.482451 | 4_3:-64854789 | Msa0655900:three_prime_UTR |
| AACGTCTTTGTTCATAGAGA+TGG | 0.488359 | 4_3:-64857083 | Msa0655900:CDS |
| CAGACCAATGTTTATGGCAA+TGG | 0.496594 | 4_3:-64856288 | Msa0655900:CDS |
| ACAAAATACCTGGGAACCTA+AGG | 0.498007 | 4_3:+64854639 | None:intergenic |
| AAATTCGACCCTGTCACATT+CGG | 0.498531 | 4_3:-64854917 | Msa0655900:CDS |
| AGTTCATACCTTAGGTTCCC+AGG | 0.502051 | 4_3:-64854647 | Msa0655900:three_prime_UTR |
| GCATCAGATTGGGCTACCAA+TGG | 0.503583 | 4_3:-64855223 | Msa0655900:CDS |
| GAGAGGAAAGATATGGTCTC+TGG | 0.504612 | 4_3:-64856248 | Msa0655900:CDS |
| TATAGAGAGAGAAAGAAAGA+GGG | 0.505042 | 4_3:-64854736 | Msa0655900:three_prime_UTR |
| ACTCAAAATCTATTTCATCA+TGG | 0.506747 | 4_3:+64856346 | None:intergenic |
| CACAAGAAGCTGAAAGGCTA+AGG | 0.507826 | 4_3:-64854940 | Msa0655900:CDS |
| CACTTGGCTACATGCTCGAT+TGG | 0.512580 | 4_3:+64855118 | None:intergenic |
| CTATATGGGATGCATCAGAT+TGG | 0.512671 | 4_3:-64855234 | Msa0655900:CDS |
| TATTGATGAAAATCCTCTGC+AGG | 0.513019 | 4_3:+64856219 | None:intergenic |
| GACTCTGTATGCGACTATAT+GGG | 0.515315 | 4_3:-64855248 | Msa0655900:CDS |
| GGCAATGGAAGCACCAGCAT+TGG | 0.516287 | 4_3:-64856273 | Msa0655900:CDS |
| GTATAGAGAGAGAAAGAAAG+AGG | 0.517651 | 4_3:-64854737 | Msa0655900:three_prime_UTR |
| AAAGATAGATAGAAAGAGAG+AGG | 0.519824 | 4_3:+64857328 | None:intergenic |
| CTATTACGGCCTTTGATGAA+GGG | 0.522479 | 4_3:-64857130 | Msa0655900:CDS |
| GACATGAATAACAAAATACC+TGG | 0.525056 | 4_3:+64854629 | None:intergenic |
| TATATGGGATGCATCAGATT+GGG | 0.525648 | 4_3:-64855233 | Msa0655900:CDS |
| TGGTGTAACACCAGAAGGAA+TGG | 0.534559 | 4_3:+64855072 | None:intergenic |
| ATTCGGTTCGATTACCACCT+GGG | 0.536843 | 4_3:-64854788 | Msa0655900:three_prime_UTR |
| TTGTATCTGCAGATGTCAAA+TGG | 0.539892 | 4_3:-64856387 | Msa0655900:intron |
| AGCGATAGAGAGGTGCTAGC+TGG | 0.541569 | 4_3:+64857378 | None:intergenic |
| GTGGTAATCGAACCGAATCA+AGG | 0.543457 | 4_3:+64854793 | None:intergenic |
| GAGGAGAAAGGCAGAGACAA+AGG | 0.544653 | 4_3:+64857409 | None:intergenic |
| AAACAGGGTAACGAAGAAGA+AGG | 0.545127 | 4_3:+64857299 | None:intergenic |
| CGTGGTTTCCTCTGCTGTGG+TGG | 0.546130 | 4_3:+64854864 | None:intergenic |
| TTTAATAATCTGTAAAGCAC+AGG | 0.546729 | 4_3:+64854607 | None:intergenic |
| CTGGTTATTAGAGAGGAGAA+AGG | 0.550010 | 4_3:+64857397 | None:intergenic |
| CGCATACAGAGTCATAGGCT+TGG | 0.550129 | 4_3:+64855258 | None:intergenic |
| TGTTCATAGAGATGGCAAAT+CGG | 0.550991 | 4_3:-64857075 | Msa0655900:CDS |
| TGTACTGGTGTAACACCAGA+AGG | 0.555810 | 4_3:+64855067 | None:intergenic |
| GACCCTGTCACATTCGGCAG+CGG | 0.558184 | 4_3:-64854911 | Msa0655900:CDS |
| ACATTAGAGGCAAAGATTGG+AGG | 0.561664 | 4_3:-64856314 | Msa0655900:CDS |
| GGATTGATCACGCACTCTGA+TGG | 0.565213 | 4_3:+64854962 | None:intergenic |
| GCTTCCATTGCCATAAACAT+TGG | 0.568127 | 4_3:+64856284 | None:intergenic |
| AAGCACTGAAATACCCATGA+AGG | 0.569254 | 4_3:+64856894 | None:intergenic |
| AACAGCTAGAAGCGATAGAG+AGG | 0.569345 | 4_3:+64857368 | None:intergenic |
| ATTTCTAGATGAAGCAGAAG+CGG | 0.570082 | 4_3:+64857157 | None:intergenic |
| ATTGGCAGAGAGGAAAGATA+TGG | 0.574281 | 4_3:-64856255 | Msa0655900:CDS |
| ACTTTGAGCAGTGTCACACT+TGG | 0.575287 | 4_3:+64855102 | None:intergenic |
| CTGCGTGGTTTCCTCTGCTG+TGG | 0.577797 | 4_3:+64854861 | None:intergenic |
| TTACCTGCTGATTACACTGC+CGG | 0.582709 | 4_3:-64856863 | Msa0655900:CDS |
| ATAGAGAGAGAAAGAAAGAG+GGG | 0.583848 | 4_3:-64854735 | Msa0655900:three_prime_UTR |
| TATTTAGACCATATACCTCA+GGG | 0.591028 | 4_3:-64854570 | Msa0655900:three_prime_UTR |
| ACACCGGCAGTGTAATCAGC+AGG | 0.593919 | 4_3:+64856860 | None:intergenic |
| AGGTGTGTACCCTTCATCAA+AGG | 0.593957 | 4_3:+64857121 | None:intergenic |
| TCTCTGGTTTGATCCTGCAG+AGG | 0.605207 | 4_3:-64856232 | Msa0655900:CDS |
| GTGCTAGCTGGTTATTAGAG+AGG | 0.605259 | 4_3:+64857390 | None:intergenic |
| AAACGACACCACCACAGCAG+AGG | 0.605813 | 4_3:-64854872 | Msa0655900:CDS |
| TCAATCCACAAGAAGCTGAA+AGG | 0.606328 | 4_3:-64854946 | Msa0655900:CDS |
| TTTATTTGTATAGAAGTGTG+TGG | 0.607517 | 4_3:+64857252 | None:intergenic |
| AGTTACACGGACAAAATCGA+TGG | 0.608259 | 4_3:-64855296 | Msa0655900:CDS |
| TCAGATTGGGCTACCAATGG+GGG | 0.608759 | 4_3:-64855220 | Msa0655900:CDS |
| GATCGACTGCACAACCATGT+AGG | 0.610773 | 4_3:+64855140 | None:intergenic |
| TGCCGCTGCCGAATGTGACA+GGG | 0.625854 | 4_3:+64854909 | None:intergenic |
| GGATGAAATTAATCTTCGTG+TGG | 0.627643 | 4_3:+64854814 | None:intergenic |
| ATCAGATTGGGCTACCAATG+GGG | 0.630175 | 4_3:-64855221 | Msa0655900:CDS |
| TTGATCACGCACTCTGATGG+AGG | 0.630279 | 4_3:+64854965 | None:intergenic |
| CTGCACAACCATGTAGGACA+AGG | 0.642790 | 4_3:+64855146 | None:intergenic |
| ACAGAGTCATAGGCTTGGCA+GGG | 0.644912 | 4_3:+64855263 | None:intergenic |
| GGCAGCGGCAGACATCGTCA+TGG | 0.658799 | 4_3:-64854896 | Msa0655900:CDS |
| ACATGAATAACAAAATACCT+GGG | 0.660009 | 4_3:+64854630 | None:intergenic |
| ACAACCATGTAGGACAAGGT+CGG | 0.664828 | 4_3:+64855150 | None:intergenic |
| GAGAAAGGCAGAGACAAAGG+AGG | 0.668200 | 4_3:+64857412 | None:intergenic |
| AAAATGAAACAGCTTCTGCG+TGG | 0.670081 | 4_3:+64854846 | None:intergenic |
| GTTACACGGACAAAATCGAT+GGG | 0.671108 | 4_3:-64855295 | Msa0655900:CDS |
| AAGCACCAGCATTGGCAGAG+AGG | 0.671848 | 4_3:-64856265 | Msa0655900:CDS |
| TTCCTATTAGAGAAGTTACA+CGG | 0.672955 | 4_3:-64855309 | Msa0655900:CDS |
| ATAAAAGGCAACAACAACAC+CGG | 0.674758 | 4_3:+64856844 | None:intergenic |
| TTAATTTATTGAAAACCCTG+AGG | 0.676094 | 4_3:+64854555 | None:intergenic |
| AGGGTACACACCTTTGTTTG+GGG | 0.683056 | 4_3:-64857111 | Msa0655900:CDS |
| ACGTTATTATCCCCAAACAA+AGG | 0.684297 | 4_3:+64857101 | None:intergenic |
| ACACGGACAAAATCGATGGG+AGG | 0.707346 | 4_3:-64855292 | Msa0655900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCTAATAAAAGTAAA+AGG | - | chr4_3:64855471-64855490 | Msa0655900:intron | 10.0% |
| !!! | AAAGAAAAAGTATAGAAAAT+AGG | + | chr4_3:64854725-64854744 | None:intergenic | 15.0% |
| !! | AAAAATTAAGAGACAAAAAT+AGG | + | chr4_3:64855162-64855181 | None:intergenic | 15.0% |
| !! | AAAAAAATATATTGCATGAA+AGG | + | chr4_3:64855866-64855885 | None:intergenic | 15.0% |
| !! | ATCTAGAAATTTACCTATTA+CGG | - | chr4_3:64854758-64854777 | Msa0655900:three_prime_UTR | 20.0% |
| !!! | GGATAAAGTATTAATCTTTT+TGG | - | chr4_3:64854929-64854948 | Msa0655900:CDS | 20.0% |
| !!! | TTTTTGGTTTTTCTGTTATT+GGG | - | chr4_3:64854945-64854964 | Msa0655900:CDS | 20.0% |
| !!! | TGAAATAGATTTTGAGTTTT+TGG | - | chr4_3:64855562-64855581 | Msa0655900:intron | 20.0% |
| !!! | GAAATAGATTTTGAGTTTTT+GGG | - | chr4_3:64855563-64855582 | Msa0655900:intron | 20.0% |
| !! | TAGTATTACTAAGAAAATGT+AGG | + | chr4_3:64855816-64855835 | None:intergenic | 20.0% |
| !!! | CAATAAAGATCTTTGTTTAT+AGG | - | chr4_3:64855904-64855923 | Msa0655900:intron | 20.0% |
| !! | AAAAACAGGAATACAATATT+AGG | + | chr4_3:64856546-64856565 | None:intergenic | 20.0% |
| !!! | CGAATATGATAATTTTGATA+TGG | - | chr4_3:64857203-64857222 | Msa0655900:CDS | 20.0% |
| !! | TTTATTTGTATAGAAGTGTG+TGG | + | chr4_3:64854653-64854672 | None:intergenic | 25.0% |
| !!! | TTGTTGTTACTATGATTTTG+TGG | - | chr4_3:64854908-64854927 | Msa0655900:CDS | 25.0% |
| !!! | CTTTTTGGTTTTTCTGTTAT+TGG | - | chr4_3:64854944-64854963 | Msa0655900:CDS | 25.0% |
| ! | ACTCAAAATCTATTTCATCA+TGG | + | chr4_3:64855559-64855578 | None:intergenic | 25.0% |
| !! | TTTGGAATGTAAAAATCCAA+AGG | + | chr4_3:64855786-64855805 | None:intergenic | 25.0% |
| ! | GAAAATGTAGGTATATTCTT+TGG | + | chr4_3:64855804-64855823 | None:intergenic | 25.0% |
| ! | AAAGATCTTTATTGCATGTA+AGG | + | chr4_3:64855898-64855917 | None:intergenic | 25.0% |
| ! | AAGGAATCTATATATGACTT+GGG | + | chr4_3:64856011-64856030 | None:intergenic | 25.0% |
| ! | TTTAGTTGTTTATCCAAACA+GGG | + | chr4_3:64856062-64856081 | None:intergenic | 25.0% |
| ! | ATTTAGTTGTTTATCCAAAC+AGG | + | chr4_3:64856063-64856082 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAATCAGCTTA+TGG | - | chr4_3:64856266-64856285 | Msa0655900:CDS | 25.0% |
| ! | AGATGCAAGTAAATATTTGT+CGG | + | chr4_3:64856331-64856350 | None:intergenic | 25.0% |
| ! | TCAAAACATCGTAATTAACA+TGG | + | chr4_3:64856499-64856518 | None:intergenic | 25.0% |
| ! | ACCAGTACAAAAAATCAAAA+TGG | - | chr4_3:64856849-64856868 | Msa0655900:CDS | 25.0% |
| !!! | TCCATTTTGATTTTTTGTAC+TGG | + | chr4_3:64856853-64856872 | None:intergenic | 25.0% |
| !!! | GAAGCTGTTTCATTTTAATA+AGG | - | chr4_3:64857063-64857082 | Msa0655900:CDS | 25.0% |
| ! | GATTAATTTCATCCTTGATT+CGG | - | chr4_3:64857097-64857116 | Msa0655900:CDS | 25.0% |
| !!! | AATTTTGATATGGTTCCTTT+TGG | - | chr4_3:64857213-64857232 | Msa0655900:exon | 25.0% |
| ! | ACATGAATAACAAAATACCT+GGG | + | chr4_3:64857275-64857294 | None:intergenic | 25.0% |
| ! | TTTAATAATCTGTAAAGCAC+AGG | + | chr4_3:64857298-64857317 | None:intergenic | 25.0% |
| ! | TTAATTTATTGAAAACCCTG+AGG | + | chr4_3:64857350-64857369 | None:intergenic | 25.0% |
| ! | CATGAGTTATTTAATGAAGT+AGG | - | chr4_3:64857378-64857397 | Msa0655900:five_prime_UTR | 25.0% |
| AAAGATAGATAGAAAGAGAG+AGG | + | chr4_3:64854577-64854596 | None:intergenic | 30.0% | |
| AAGAAGTGATGCAAAAAACA+GGG | + | chr4_3:64854621-64854640 | None:intergenic | 30.0% | |
| AAAGAAGTGATGCAAAAAAC+AGG | + | chr4_3:64854622-64854641 | None:intergenic | 30.0% | |
| ! | ATTCATGGGTTATTCTCATA+TGG | - | chr4_3:64854689-64854708 | Msa0655900:three_prime_UTR | 30.0% |
| CTTTCTTTAGATGAAAGAAC+AGG | - | chr4_3:64854855-64854874 | Msa0655900:CDS | 30.0% | |
| AACAGGTTTGAAAATCTACA+TGG | - | chr4_3:64854872-64854891 | Msa0655900:CDS | 30.0% | |
| ACAGGTTTGAAAATCTACAT+GGG | - | chr4_3:64854873-64854892 | Msa0655900:CDS | 30.0% | |
| TCTCATGATATTTACCTTCA+TGG | - | chr4_3:64854994-64855013 | Msa0655900:CDS | 30.0% | |
| CTCATGATATTTACCTTCAT+GGG | - | chr4_3:64854995-64855014 | Msa0655900:CDS | 30.0% | |
| GAAGTAATCACTCACATAAA+AGG | + | chr4_3:64855076-64855095 | None:intergenic | 30.0% | |
| CTTGAGAATATAATCCGATA+AGG | - | chr4_3:64855205-64855224 | Msa0655900:CDS | 30.0% | |
| ! | GTCTCAGGTTTTTAATATTC+AGG | - | chr4_3:64855233-64855252 | Msa0655900:CDS | 30.0% |
| !! | TATTCAGGTGTTGAAAATCA+AGG | - | chr4_3:64855248-64855267 | Msa0655900:CDS | 30.0% |
| ACTGATTGTGACTAAAACTT+AGG | - | chr4_3:64855357-64855376 | Msa0655900:intron | 30.0% | |
| TTCATCAATACAGTATTCTC+TGG | - | chr4_3:64855696-64855715 | Msa0655900:intron | 30.0% | |
| CAAGGAATCTATATATGACT+TGG | + | chr4_3:64856012-64856031 | None:intergenic | 30.0% | |
| GATGCAAGTAAATATTTGTC+GGG | + | chr4_3:64856330-64856349 | None:intergenic | 30.0% | |
| TGAAGATGCTTAAAATCTGT+CGG | - | chr4_3:64856363-64856382 | Msa0655900:CDS | 30.0% | |
| GGCTTATAATCAAATCATCT+TGG | - | chr4_3:64856453-64856472 | Msa0655900:intron | 30.0% | |
| ATCTACATAAAATCTGCACA+AGG | + | chr4_3:64856569-64856588 | None:intergenic | 30.0% | |
| TTCCTATTAGAGAAGTTACA+CGG | - | chr4_3:64856593-64856612 | Msa0655900:intron | 30.0% | |
| AAATCAAAATGGAGAACTTC+AGG | - | chr4_3:64856860-64856879 | Msa0655900:CDS | 30.0% | |
| AAAAGAAAAATTAACCCAGG+TGG | + | chr4_3:64857131-64857150 | None:intergenic | 30.0% | |
| AGGAAAAGAAAAATTAACCC+AGG | + | chr4_3:64857134-64857153 | None:intergenic | 30.0% | |
| ! | TTTTTCTTTTCCTTTCTTCG+TGG | - | chr4_3:64857141-64857160 | Msa0655900:CDS | 30.0% |
| TATAGAGAGAGAAAGAAAGA+GGG | - | chr4_3:64857166-64857185 | Msa0655900:CDS | 30.0% | |
| ATGTGTATAGTTCATACCTT+AGG | - | chr4_3:64857247-64857266 | Msa0655900:five_prime_UTR | 30.0% | |
| GACATGAATAACAAAATACC+TGG | + | chr4_3:64857276-64857295 | None:intergenic | 30.0% | |
| TATTTAGACCATATACCTCA+GGG | - | chr4_3:64857332-64857351 | Msa0655900:five_prime_UTR | 30.0% | |
| TAGATAGAAAGAGAGAGGTT+TGG | + | chr4_3:64854572-64854591 | None:intergenic | 35.0% | |
| ! | ATTTCTAGATGAAGCAGAAG+CGG | + | chr4_3:64854748-64854767 | None:intergenic | 35.0% |
| ACGTTATTATCCCCAAACAA+AGG | + | chr4_3:64854804-64854823 | None:intergenic | 35.0% | |
| AACGTCTTTGTTCATAGAGA+TGG | - | chr4_3:64854819-64854838 | Msa0655900:three_prime_UTR | 35.0% | |
| TGTTCATAGAGATGGCAAAT+CGG | - | chr4_3:64854827-64854846 | Msa0655900:exon | 35.0% | |
| ATAAAAGGCAACAACAACAC+CGG | + | chr4_3:64855061-64855080 | None:intergenic | 35.0% | |
| TTGTATCTGCAGATGTCAAA+TGG | - | chr4_3:64855515-64855534 | Msa0655900:intron | 35.0% | |
| !! | GAGTTTTTGGGAAACATTAG+AGG | - | chr4_3:64855575-64855594 | Msa0655900:intron | 35.0% |
| GAAACATTAGAGGCAAAGAT+TGG | - | chr4_3:64855585-64855604 | Msa0655900:intron | 35.0% | |
| AGGATTCAGACCAATGTTTA+TGG | - | chr4_3:64855608-64855627 | Msa0655900:intron | 35.0% | |
| TATTGATGAAAATCCTCTGC+AGG | + | chr4_3:64855686-64855705 | None:intergenic | 35.0% | |
| AACCTCATACATACCATATC+TGG | - | chr4_3:64855756-64855775 | Msa0655900:intron | 35.0% | |
| AACCAGATATGGTATGTATG+AGG | + | chr4_3:64855761-64855780 | None:intergenic | 35.0% | |
| !!! | ATCTAGCTGTTTTTTGCTGT+TGG | - | chr4_3:64855937-64855956 | Msa0655900:intron | 35.0% |
| !!! | TCTAGCTGTTTTTTGCTGTT+GGG | - | chr4_3:64855938-64855957 | Msa0655900:intron | 35.0% |
| AAGCAACTTATGAAAACAGC+TGG | + | chr4_3:64856241-64856260 | None:intergenic | 35.0% | |
| TAAATATTTGTCGGGCTATC+TGG | + | chr4_3:64856322-64856341 | None:intergenic | 35.0% | |
| CAACTGATCAAACATTCACA+CGG | + | chr4_3:64856403-64856422 | None:intergenic | 35.0% | |
| ATGTTTGATCAGTTGACAGT+AGG | - | chr4_3:64856408-64856427 | Msa0655900:intron | 35.0% | |
| TGTTTGATCAGTTGACAGTA+GGG | - | chr4_3:64856409-64856428 | Msa0655900:intron | 35.0% | |
| AAATCTGCACAAGGAAAAAC+AGG | + | chr4_3:64856560-64856579 | None:intergenic | 35.0% | |
| TATATGGGATGCATCAGATT+GGG | - | chr4_3:64856669-64856688 | Msa0655900:intron | 35.0% | |
| CTTACTGTTACGACAAAATC+AGG | - | chr4_3:64856902-64856921 | Msa0655900:CDS | 35.0% | |
| GGATGAAATTAATCTTCGTG+TGG | + | chr4_3:64857091-64857110 | None:intergenic | 35.0% | |
| GTATAGAGAGAGAAAGAAAG+AGG | - | chr4_3:64857165-64857184 | Msa0655900:CDS | 35.0% | |
| ATAGAGAGAGAAAGAAAGAG+GGG | - | chr4_3:64857167-64857186 | Msa0655900:CDS | 35.0% | |
| ! | TTTGATATGGTTCCTTTTGG+TGG | - | chr4_3:64857216-64857235 | Msa0655900:exon | 35.0% |
| GAGGTATATGGTCTAAATAC+AGG | + | chr4_3:64857331-64857350 | None:intergenic | 35.0% | |
| GTATTTAGACCATATACCTC+AGG | - | chr4_3:64857331-64857350 | Msa0655900:five_prime_UTR | 35.0% | |
| ATTGAAAACCCTGAGGTATA+TGG | + | chr4_3:64857343-64857362 | None:intergenic | 35.0% | |
| CTGGTTATTAGAGAGGAGAA+AGG | + | chr4_3:64854508-64854527 | None:intergenic | 40.0% | |
| AAACAGGGTAACGAAGAAGA+AGG | + | chr4_3:64854606-64854625 | None:intergenic | 40.0% | |
| CTATTACGGCCTTTGATGAA+GGG | - | chr4_3:64854772-64854791 | Msa0655900:three_prime_UTR | 40.0% | |
| ! | AAGGGTACACACCTTTGTTT+GGG | - | chr4_3:64854790-64854809 | Msa0655900:three_prime_UTR | 40.0% |
| ! | TGTTATTGGGTTGTGTTTGC+AGG | - | chr4_3:64854958-64854977 | Msa0655900:CDS | 40.0% |
| !! | AAGCACTGAAATACCCATGA+AGG | + | chr4_3:64855011-64855030 | None:intergenic | 40.0% |
| AATTTCAACAGCGACGTTTC+TGG | + | chr4_3:64855422-64855441 | None:intergenic | 40.0% | |
| ACATTAGAGGCAAAGATTGG+AGG | - | chr4_3:64855588-64855607 | Msa0655900:intron | 40.0% | |
| CAGACCAATGTTTATGGCAA+TGG | - | chr4_3:64855614-64855633 | Msa0655900:intron | 40.0% | |
| GCTTCCATTGCCATAAACAT+TGG | + | chr4_3:64855621-64855640 | None:intergenic | 40.0% | |
| ATTGGCAGAGAGGAAAGATA+TGG | - | chr4_3:64855647-64855666 | Msa0655900:intron | 40.0% | |
| ! | TACCATATCTGGTTCACCTT+TGG | - | chr4_3:64855767-64855786 | Msa0655900:intron | 40.0% |
| ATCCAAAGGTGAACCAGATA+TGG | + | chr4_3:64855772-64855791 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGCTGTTGGGTTTG+TGG | - | chr4_3:64855945-64855964 | Msa0655900:intron | 40.0% |
| ATTTGATTATAAGCCCCCGA+TGG | + | chr4_3:64856448-64856467 | None:intergenic | 40.0% | |
| GTCCGTGTAACTTCTCTAAT+AGG | + | chr4_3:64856598-64856617 | None:intergenic | 40.0% | |
| AGTTACACGGACAAAATCGA+TGG | - | chr4_3:64856606-64856625 | Msa0655900:intron | 40.0% | |
| GTTACACGGACAAAATCGAT+GGG | - | chr4_3:64856607-64856626 | Msa0655900:intron | 40.0% | |
| ATAGTCGCATACAGAGTCAT+AGG | + | chr4_3:64856652-64856671 | None:intergenic | 40.0% | |
| TGACTCTGTATGCGACTATA+TGG | - | chr4_3:64856653-64856672 | Msa0655900:intron | 40.0% | |
| GACTCTGTATGCGACTATAT+GGG | - | chr4_3:64856654-64856673 | Msa0655900:intron | 40.0% | |
| CTATATGGGATGCATCAGAT+TGG | - | chr4_3:64856668-64856687 | Msa0655900:intron | 40.0% | |
| TCGGAGAATTTGGCAACATA+TGG | + | chr4_3:64856736-64856755 | None:intergenic | 40.0% | |
| AGTTCCAAATCCATTCCTTC+TGG | - | chr4_3:64856820-64856839 | Msa0655900:intron | 40.0% | |
| ! | AACACCAGAAGGAATGGATT+TGG | + | chr4_3:64856827-64856846 | None:intergenic | 40.0% |
| TCAATCCACAAGAAGCTGAA+AGG | - | chr4_3:64856956-64856975 | Msa0655900:intron | 40.0% | |
| AAATTCGACCCTGTCACATT+CGG | - | chr4_3:64856985-64857004 | Msa0655900:intron | 40.0% | |
| AAAATGAAACAGCTTCTGCG+TGG | + | chr4_3:64857059-64857078 | None:intergenic | 40.0% | |
| TCTCTATACACCACGAAGAA+AGG | + | chr4_3:64857154-64857173 | None:intergenic | 40.0% | |
| !! | ATATGGTTCCTTTTGGTGGT+GGG | - | chr4_3:64857220-64857239 | Msa0655900:exon | 40.0% |
| ACAAAATACCTGGGAACCTA+AGG | + | chr4_3:64857266-64857285 | None:intergenic | 40.0% | |
| GTGCTAGCTGGTTATTAGAG+AGG | + | chr4_3:64854515-64854534 | None:intergenic | 45.0% | |
| AACAGCTAGAAGCGATAGAG+AGG | + | chr4_3:64854537-64854556 | None:intergenic | 45.0% | |
| CCTTCATCAAAGGCCGTAAT+AGG | + | chr4_3:64854774-64854793 | None:intergenic | 45.0% | |
| CCTATTACGGCCTTTGATGA+AGG | - | chr4_3:64854771-64854790 | Msa0655900:three_prime_UTR | 45.0% | |
| AGGTGTGTACCCTTCATCAA+AGG | + | chr4_3:64854784-64854803 | None:intergenic | 45.0% | |
| ! | GAAGGGTACACACCTTTGTT+TGG | - | chr4_3:64854789-64854808 | Msa0655900:three_prime_UTR | 45.0% |
| ! | AGGGTACACACCTTTGTTTG+GGG | - | chr4_3:64854791-64854810 | Msa0655900:three_prime_UTR | 45.0% |
| ! | TTACCTGCTGATTACACTGC+CGG | - | chr4_3:64855039-64855058 | Msa0655900:CDS | 45.0% |
| ACCTGAGACTGAGACCTTAT+CGG | + | chr4_3:64855222-64855241 | None:intergenic | 45.0% | |
| AATCAGTGAGCATGTGGTTG+AGG | + | chr4_3:64855344-64855363 | None:intergenic | 45.0% | |
| AGTCACAATCAGTGAGCATG+TGG | + | chr4_3:64855350-64855369 | None:intergenic | 45.0% | |
| GAGAGGAAAGATATGGTCTC+TGG | - | chr4_3:64855654-64855673 | Msa0655900:intron | 45.0% | |
| AACAGGGCAAATCGAATGTG+TGG | + | chr4_3:64856046-64856065 | None:intergenic | 45.0% | |
| ! | CACATTCGATTTGCCCTGTT+TGG | - | chr4_3:64856046-64856065 | Msa0655900:intron | 45.0% |
| GGGAATCCATATCCTACCAT+CGG | - | chr4_3:64856429-64856448 | Msa0655900:intron | 45.0% | |
| GGAATCCATATCCTACCATC+GGG | - | chr4_3:64856430-64856449 | Msa0655900:intron | 45.0% | |
| GAATCCATATCCTACCATCG+GGG | - | chr4_3:64856431-64856450 | Msa0655900:intron | 45.0% | |
| AATCCATATCCTACCATCGG+GGG | - | chr4_3:64856432-64856451 | Msa0655900:intron | 45.0% | |
| CATCAGATTGGGCTACCAAT+GGG | - | chr4_3:64856680-64856699 | Msa0655900:intron | 45.0% | |
| ATCAGATTGGGCTACCAATG+GGG | - | chr4_3:64856681-64856700 | Msa0655900:intron | 45.0% | |
| AACTCTGTACTTTCCCCCAT+TGG | + | chr4_3:64856698-64856717 | None:intergenic | 45.0% | |
| TAGGACAAGGTCGGAGAATT+TGG | + | chr4_3:64856746-64856765 | None:intergenic | 45.0% | |
| ACAACCATGTAGGACAAGGT+CGG | + | chr4_3:64856755-64856774 | None:intergenic | 45.0% | |
| ACTTTGAGCAGTGTCACACT+TGG | + | chr4_3:64856803-64856822 | None:intergenic | 45.0% | |
| TGGTGTAACACCAGAAGGAA+TGG | + | chr4_3:64856833-64856852 | None:intergenic | 45.0% | |
| ! | TGTACTGGTGTAACACCAGA+AGG | + | chr4_3:64856838-64856857 | None:intergenic | 45.0% |
| ! | CTTAGCCTTTCAGCTTCTTG+TGG | + | chr4_3:64856964-64856983 | None:intergenic | 45.0% |
| CACAAGAAGCTGAAAGGCTA+AGG | - | chr4_3:64856962-64856981 | Msa0655900:intron | 45.0% | |
| GTGGTAATCGAACCGAATCA+AGG | + | chr4_3:64857112-64857131 | None:intergenic | 45.0% | |
| ! | ATTCGGTTCGATTACCACCT+GGG | - | chr4_3:64857114-64857133 | Msa0655900:CDS | 45.0% |
| ! | GATATGGTTCCTTTTGGTGG+TGG | - | chr4_3:64857219-64857238 | Msa0655900:exon | 45.0% |
| !!! | TATGGTTCCTTTTGGTGGTG+GGG | - | chr4_3:64857221-64857240 | Msa0655900:exon | 45.0% |
| AGTTCATACCTTAGGTTCCC+AGG | - | chr4_3:64857255-64857274 | Msa0655900:five_prime_UTR | 45.0% | |
| !! | ATTAAAAAAAATATAATTCA+TGG | - | chr4_3:64854674-64854693 | Msa0655900:three_prime_UTR | 5.0% |
| !! | TTAAAAAAAATATAATTCAT+GGG | - | chr4_3:64854675-64854694 | Msa0655900:three_prime_UTR | 5.0% |
| !! | TAAAATAATAATAAATTAGA+CGG | - | chr4_3:64855302-64855321 | Msa0655900:CDS | 5.0% |
| GAGAAAGGCAGAGACAAAGG+AGG | + | chr4_3:64854493-64854512 | None:intergenic | 50.0% | |
| GAGGAGAAAGGCAGAGACAA+AGG | + | chr4_3:64854496-64854515 | None:intergenic | 50.0% | |
| TGGGTTGTGTTTGCAGGTTC+TGG | - | chr4_3:64854964-64854983 | Msa0655900:CDS | 50.0% | |
| TCCGATAAGGTCTCAGTCTC+AGG | - | chr4_3:64855218-64855237 | Msa0655900:CDS | 50.0% | |
| TCTTTCCTCTCTGCCAATGC+TGG | + | chr4_3:64855645-64855664 | None:intergenic | 50.0% | |
| ! | TCTCTGGTTTGATCCTGCAG+AGG | - | chr4_3:64855670-64855689 | Msa0655900:intron | 50.0% |
| TGTGTGGTCTCTTGACAGCA+AGG | + | chr4_3:64856030-64856049 | None:intergenic | 50.0% | |
| GATTATAAGCCCCCGATGGT+AGG | + | chr4_3:64856444-64856463 | None:intergenic | 50.0% | |
| ACACGGACAAAATCGATGGG+AGG | - | chr4_3:64856610-64856629 | Msa0655900:intron | 50.0% | |
| ACAGAGTCATAGGCTTGGCA+GGG | + | chr4_3:64856642-64856661 | None:intergenic | 50.0% | |
| TACAGAGTCATAGGCTTGGC+AGG | + | chr4_3:64856643-64856662 | None:intergenic | 50.0% | |
| CGCATACAGAGTCATAGGCT+TGG | + | chr4_3:64856647-64856666 | None:intergenic | 50.0% | |
| GCATCAGATTGGGCTACCAA+TGG | - | chr4_3:64856679-64856698 | Msa0655900:intron | 50.0% | |
| TCAGATTGGGCTACCAATGG+GGG | - | chr4_3:64856682-64856701 | Msa0655900:intron | 50.0% | |
| TTCTCCGACCTTGTCCTACA+TGG | - | chr4_3:64856748-64856767 | Msa0655900:intron | 50.0% | |
| CTGCACAACCATGTAGGACA+AGG | + | chr4_3:64856759-64856778 | None:intergenic | 50.0% | |
| GATCGACTGCACAACCATGT+AGG | + | chr4_3:64856765-64856784 | None:intergenic | 50.0% | |
| CACTTGGCTACATGCTCGAT+TGG | + | chr4_3:64856787-64856806 | None:intergenic | 50.0% | |
| TTGATCACGCACTCTGATGG+AGG | + | chr4_3:64856940-64856959 | None:intergenic | 50.0% | |
| GGATTGATCACGCACTCTGA+TGG | + | chr4_3:64856943-64856962 | None:intergenic | 50.0% | |
| ! | GATTCGGTTCGATTACCACC+TGG | - | chr4_3:64857113-64857132 | Msa0655900:CDS | 50.0% |
| !!! | ATGGTTCCTTTTGGTGGTGG+GGG | - | chr4_3:64857222-64857241 | Msa0655900:exon | 50.0% |
| !! | AGCGATAGAGAGGTGCTAGC+TGG | + | chr4_3:64854527-64854546 | None:intergenic | 55.0% |
| ACACCGGCAGTGTAATCAGC+AGG | + | chr4_3:64855045-64855064 | None:intergenic | 55.0% | |
| !! | GGCAATGGAAGCACCAGCAT+TGG | - | chr4_3:64855629-64855648 | Msa0655900:intron | 55.0% |
| !! | AAGCACCAGCATTGGCAGAG+AGG | - | chr4_3:64855637-64855656 | Msa0655900:intron | 55.0% |
| AAGCCCCCGATGGTAGGATA+TGG | + | chr4_3:64856438-64856457 | None:intergenic | 55.0% | |
| AAACGACACCACCACAGCAG+AGG | - | chr4_3:64857030-64857049 | Msa0655900:intron | 55.0% | |
| !!! | TGGTTCCTTTTGGTGGTGGG+GGG | - | chr4_3:64857223-64857242 | Msa0655900:exon | 55.0% |
| ACATACCCCCCACCACCAAA+AGG | + | chr4_3:64857231-64857250 | None:intergenic | 55.0% | |
| GACCCTGTCACATTCGGCAG+CGG | - | chr4_3:64856991-64857010 | Msa0655900:intron | 60.0% | |
| TGCCGCTGCCGAATGTGACA+GGG | + | chr4_3:64856996-64857015 | None:intergenic | 60.0% | |
| CGTGGTTTCCTCTGCTGTGG+TGG | + | chr4_3:64857041-64857060 | None:intergenic | 60.0% | |
| CTGCGTGGTTTCCTCTGCTG+TGG | + | chr4_3:64857044-64857063 | None:intergenic | 60.0% | |
| CTGCCGCTGCCGAATGTGAC+AGG | + | chr4_3:64856997-64857016 | None:intergenic | 65.0% | |
| GGCAGCGGCAGACATCGTCA+TGG | - | chr4_3:64857006-64857025 | Msa0655900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 64854466 | 64857458 | 64854466 | ID=Msa0655900;Name=Msa0655900 |
| chr4_3 | mRNA | 64854466 | 64857458 | 64854466 | ID=Msa0655900-mRNA-1;Parent=Msa0655900;Name=Msa0655900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=227|1|1|1|1|1|4|378|332 |
| chr4_3 | exon | 64854466 | 64855348 | 64854466 | ID=Msa0655900-mRNA-1:exon:18377;Parent=Msa0655900-mRNA-1 |
| chr4_3 | exon | 64856189 | 64856397 | 64856189 | ID=Msa0655900-mRNA-1:exon:18376;Parent=Msa0655900-mRNA-1 |
| chr4_3 | exon | 64856844 | 64856944 | 64856844 | ID=Msa0655900-mRNA-1:exon:18375;Parent=Msa0655900-mRNA-1 |
| chr4_3 | exon | 64857048 | 64857458 | 64857048 | ID=Msa0655900-mRNA-1:exon:18374;Parent=Msa0655900-mRNA-1 |
| chr4_3 | five_prime_UTR | 64857232 | 64857458 | 64857232 | ID=Msa0655900-mRNA-1:five_prime_utr;Parent=Msa0655900-mRNA-1 |
| chr4_3 | CDS | 64857048 | 64857231 | 64857048 | ID=Msa0655900-mRNA-1:cds;Parent=Msa0655900-mRNA-1 |
| chr4_3 | CDS | 64856844 | 64856944 | 64856844 | ID=Msa0655900-mRNA-1:cds;Parent=Msa0655900-mRNA-1 |
| chr4_3 | CDS | 64856189 | 64856397 | 64856189 | ID=Msa0655900-mRNA-1:cds;Parent=Msa0655900-mRNA-1 |
| chr4_3 | CDS | 64854844 | 64855348 | 64854844 | ID=Msa0655900-mRNA-1:cds;Parent=Msa0655900-mRNA-1 |
| chr4_3 | three_prime_UTR | 64854466 | 64854843 | 64854466 | ID=Msa0655900-mRNA-1:three_prime_utr;Parent=Msa0655900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
