Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699760 | XP_039684839.1 | 97.892 | 332 | 7 | 0 | 1 | 332 | 1 | 332 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699760 | sp|Q38909|XTH28_ARATH | 67.470 | 332 | 106 | 2 | 1 | 331 | 1 | 331 | 1.30e-167 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699760 | G8A358 | 97.892 | 332 | 7 | 0 | 1 | 332 | 1 | 332 | 0.0 | 687 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616430 | Msa0699760 | 0.995386 | 9.475408e-216 | -8.615850e-47 |
| Msa0655900 | Msa0699760 | 0.864078 | 1.574618e-64 | -8.615850e-47 |
| Msa0465470 | Msa0699760 | 0.803057 | 4.179286e-49 | -8.615850e-47 |
| Msa0500640 | Msa0699760 | 0.808857 | 2.519922e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699760 | MtrunA17_Chr8g0375981 | 97.892 | 332 | 7 | 0 | 1 | 332 | 1 | 332 | 0.0 | 687 |
| Msa0699760 | MtrunA17_Chr1g0161951 | 77.429 | 319 | 70 | 2 | 6 | 323 | 7 | 324 | 0.0 | 534 |
| Msa0699760 | MtrunA17_Chr5g0410621 | 56.949 | 295 | 119 | 3 | 20 | 308 | 31 | 323 | 2.38e-124 | 360 |
| Msa0699760 | MtrunA17_Chr8g0382041 | 48.936 | 282 | 137 | 5 | 25 | 302 | 28 | 306 | 7.78e-96 | 287 |
| Msa0699760 | MtrunA17_Chr8g0365231 | 45.752 | 306 | 138 | 5 | 7 | 290 | 11 | 310 | 3.92e-90 | 272 |
| Msa0699760 | MtrunA17_Chr4g0028221 | 41.860 | 301 | 152 | 6 | 5 | 290 | 12 | 304 | 1.38e-72 | 227 |
| Msa0699760 | MtrunA17_Chr1g0180451 | 40.468 | 299 | 153 | 7 | 8 | 290 | 5 | 294 | 5.94e-67 | 212 |
| Msa0699760 | MtrunA17_Chr2g0327411 | 40.667 | 300 | 155 | 8 | 6 | 290 | 18 | 309 | 1.26e-65 | 209 |
| Msa0699760 | MtrunA17_Chr7g0264731 | 38.721 | 297 | 159 | 6 | 9 | 290 | 3 | 291 | 2.13e-62 | 200 |
| Msa0699760 | MtrunA17_Chr7g0252601 | 36.972 | 284 | 171 | 5 | 9 | 290 | 10 | 287 | 8.28e-61 | 196 |
| Msa0699760 | MtrunA17_Chr1g0206081 | 36.301 | 292 | 180 | 5 | 8 | 296 | 12 | 300 | 3.20e-60 | 195 |
| Msa0699760 | MtrunA17_Chr6g0461761 | 36.824 | 296 | 174 | 8 | 1 | 291 | 1 | 288 | 1.01e-58 | 191 |
| Msa0699760 | MtrunA17_Chr4g0023961 | 38.000 | 300 | 161 | 11 | 4 | 291 | 3 | 289 | 1.67e-58 | 190 |
| Msa0699760 | MtrunA17_Chr3g0096651 | 40.613 | 261 | 146 | 5 | 31 | 290 | 30 | 282 | 4.95e-58 | 189 |
| Msa0699760 | MtrunA17_Chr1g0206681 | 37.358 | 265 | 158 | 4 | 31 | 292 | 34 | 293 | 5.77e-58 | 189 |
| Msa0699760 | MtrunA17_Chr4g0072611 | 37.884 | 293 | 161 | 9 | 6 | 290 | 1 | 280 | 6.73e-58 | 188 |
| Msa0699760 | MtrunA17_Chr2g0323161 | 37.667 | 300 | 161 | 11 | 4 | 291 | 2 | 287 | 7.05e-58 | 188 |
| Msa0699760 | MtrunA17_Chr8g0340001 | 40.909 | 242 | 128 | 7 | 55 | 291 | 1 | 232 | 2.05e-57 | 185 |
| Msa0699760 | MtrunA17_Chr7g0252621 | 36.972 | 284 | 171 | 5 | 9 | 290 | 10 | 287 | 3.51e-57 | 187 |
| Msa0699760 | MtrunA17_Chr5g0443391 | 38.168 | 262 | 149 | 5 | 31 | 290 | 28 | 278 | 4.74e-57 | 186 |
| Msa0699760 | MtrunA17_Chr7g0252631 | 37.282 | 287 | 166 | 6 | 9 | 290 | 10 | 287 | 8.92e-57 | 186 |
| Msa0699760 | MtrunA17_Chr7g0258911 | 34.694 | 294 | 177 | 5 | 1 | 292 | 1 | 281 | 4.27e-56 | 184 |
| Msa0699760 | MtrunA17_Chr6g0461731 | 35.640 | 289 | 174 | 7 | 7 | 291 | 31 | 311 | 6.05e-56 | 184 |
| Msa0699760 | MtrunA17_Chr4g0054451 | 36.271 | 295 | 171 | 9 | 3 | 291 | 7 | 290 | 9.37e-55 | 181 |
| Msa0699760 | MtrunA17_Chr4g0071341 | 34.875 | 281 | 168 | 6 | 15 | 292 | 15 | 283 | 1.24e-54 | 180 |
| Msa0699760 | MtrunA17_Chr4g0054431 | 37.282 | 287 | 164 | 8 | 11 | 291 | 12 | 288 | 2.91e-54 | 179 |
| Msa0699760 | MtrunA17_Chr4g0072601 | 36.719 | 256 | 154 | 4 | 39 | 292 | 36 | 285 | 3.06e-54 | 179 |
| Msa0699760 | MtrunA17_Chr4g0072671 | 35.955 | 267 | 159 | 5 | 31 | 291 | 26 | 286 | 8.06e-52 | 172 |
| Msa0699760 | MtrunA17_Chr3g0122031 | 36.015 | 261 | 155 | 5 | 31 | 290 | 28 | 277 | 1.28e-51 | 172 |
| Msa0699760 | MtrunA17_Chr3g0122021 | 36.015 | 261 | 155 | 5 | 31 | 290 | 28 | 277 | 1.37e-51 | 172 |
| Msa0699760 | MtrunA17_Chr2g0299061 | 34.694 | 294 | 166 | 7 | 8 | 291 | 10 | 287 | 9.15e-51 | 170 |
| Msa0699760 | MtrunA17_Chr8g0377841 | 34.733 | 262 | 160 | 4 | 30 | 290 | 30 | 281 | 6.39e-50 | 167 |
| Msa0699760 | MtrunA17_Chr2g0303861 | 33.571 | 280 | 170 | 9 | 1 | 276 | 1 | 268 | 1.41e-49 | 167 |
| Msa0699760 | MtrunA17_Chr6g0486581 | 32.770 | 296 | 175 | 8 | 3 | 290 | 4 | 283 | 5.87e-49 | 165 |
| Msa0699760 | MtrunA17_Chr8g0389641 | 32.180 | 289 | 144 | 5 | 3 | 290 | 5 | 242 | 1.89e-45 | 155 |
| Msa0699760 | MtrunA17_Chr2g0303721 | 31.900 | 279 | 169 | 8 | 1 | 276 | 1 | 261 | 9.75e-44 | 151 |
| Msa0699760 | MtrunA17_Chr4g0072681 | 35.714 | 224 | 131 | 5 | 74 | 290 | 26 | 243 | 4.17e-43 | 149 |
| Msa0699760 | MtrunA17_Chr7g0235541 | 38.424 | 203 | 117 | 5 | 80 | 279 | 3 | 200 | 7.79e-42 | 144 |
| Msa0699760 | MtrunA17_Chr8g0390201 | 36.842 | 190 | 113 | 4 | 106 | 290 | 22 | 209 | 1.65e-37 | 133 |
| Msa0699760 | MtrunA17_Chr8g0350711 | 36.158 | 177 | 101 | 6 | 52 | 226 | 53 | 219 | 4.64e-20 | 87.4 |
| Msa0699760 | MtrunA17_Chr4g0072641 | 29.921 | 127 | 74 | 2 | 166 | 291 | 37 | 149 | 1.43e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0699760 | AT1G14720.1 | 67.470 | 332 | 106 | 2 | 1 | 331 | 1 | 331 | 1.32e-168 | 472 |
| Msa0699760 | AT2G01850.1 | 68.580 | 331 | 97 | 5 | 6 | 330 | 4 | 333 | 9.11e-168 | 470 |
| Msa0699760 | AT1G32170.1 | 56.410 | 312 | 128 | 4 | 2 | 309 | 5 | 312 | 2.16e-124 | 360 |
| Msa0699760 | AT4G18990.1 | 52.104 | 309 | 130 | 4 | 25 | 319 | 34 | 338 | 4.19e-110 | 325 |
| Msa0699760 | AT1G10550.1 | 46.324 | 272 | 131 | 4 | 30 | 290 | 42 | 309 | 4.99e-83 | 254 |
| Msa0699760 | AT4G18990.2 | 51.477 | 237 | 97 | 4 | 97 | 319 | 32 | 264 | 5.56e-82 | 250 |
| Msa0699760 | AT4G13090.1 | 44.483 | 290 | 146 | 8 | 11 | 293 | 10 | 291 | 1.34e-74 | 232 |
| Msa0699760 | AT4G13080.1 | 39.000 | 300 | 166 | 6 | 4 | 293 | 2 | 294 | 2.39e-71 | 224 |
| Msa0699760 | AT3G44990.1 | 37.793 | 299 | 164 | 6 | 6 | 290 | 3 | 293 | 1.08e-64 | 206 |
| Msa0699760 | AT3G25050.1 | 37.248 | 298 | 170 | 9 | 1 | 290 | 1 | 289 | 8.47e-64 | 204 |
| Msa0699760 | AT1G11545.1 | 38.851 | 296 | 172 | 7 | 4 | 294 | 12 | 303 | 1.39e-63 | 204 |
| Msa0699760 | AT2G36870.1 | 39.016 | 305 | 163 | 6 | 1 | 290 | 1 | 297 | 2.15e-63 | 203 |
| Msa0699760 | AT5G13870.2 | 38.754 | 289 | 162 | 7 | 6 | 290 | 10 | 287 | 2.78e-63 | 203 |
| Msa0699760 | AT5G13870.1 | 38.754 | 289 | 162 | 7 | 6 | 290 | 10 | 287 | 2.78e-63 | 203 |
| Msa0699760 | AT5G13870.3 | 38.754 | 289 | 162 | 7 | 6 | 290 | 10 | 287 | 2.78e-63 | 203 |
| Msa0699760 | AT2G06850.1 | 37.931 | 290 | 171 | 6 | 3 | 290 | 8 | 290 | 1.39e-59 | 193 |
| Msa0699760 | AT4G37800.1 | 38.194 | 288 | 157 | 9 | 9 | 290 | 17 | 289 | 1.02e-57 | 188 |
| Msa0699760 | AT4G25810.1 | 36.913 | 298 | 164 | 8 | 1 | 291 | 4 | 284 | 1.89e-57 | 187 |
| Msa0699760 | AT5G65730.1 | 36.552 | 290 | 173 | 7 | 2 | 290 | 11 | 290 | 1.93e-57 | 187 |
| Msa0699760 | AT5G57550.1 | 37.063 | 286 | 166 | 8 | 10 | 290 | 6 | 282 | 1.22e-56 | 185 |
| Msa0699760 | AT2G06850.2 | 42.489 | 233 | 126 | 5 | 60 | 290 | 4 | 230 | 1.04e-55 | 181 |
| Msa0699760 | AT5G57560.1 | 36.000 | 300 | 165 | 9 | 1 | 291 | 1 | 282 | 2.01e-55 | 182 |
| Msa0699760 | AT2G14620.1 | 36.301 | 292 | 172 | 6 | 6 | 292 | 14 | 296 | 1.74e-54 | 180 |
| Msa0699760 | AT4G30270.1 | 35.789 | 285 | 157 | 6 | 9 | 291 | 6 | 266 | 1.88e-54 | 179 |
| Msa0699760 | AT4G03210.1 | 35.231 | 281 | 170 | 6 | 14 | 290 | 12 | 284 | 1.93e-53 | 177 |
| Msa0699760 | AT3G23730.1 | 35.714 | 266 | 161 | 4 | 30 | 290 | 26 | 286 | 2.95e-53 | 177 |
| Msa0699760 | AT4G14130.1 | 36.525 | 282 | 165 | 6 | 11 | 290 | 15 | 284 | 5.90e-53 | 176 |
| Msa0699760 | AT5G48070.1 | 35.915 | 284 | 168 | 7 | 10 | 290 | 9 | 281 | 6.48e-53 | 176 |
| Msa0699760 | AT4G30290.1 | 38.732 | 284 | 160 | 7 | 10 | 290 | 4 | 276 | 1.00e-52 | 175 |
| Msa0699760 | AT4G30280.1 | 38.380 | 284 | 161 | 7 | 10 | 290 | 9 | 281 | 1.27e-52 | 175 |
| Msa0699760 | AT5G57530.1 | 35.581 | 267 | 162 | 6 | 30 | 293 | 26 | 285 | 6.06e-52 | 173 |
| Msa0699760 | AT5G57540.1 | 34.831 | 267 | 164 | 6 | 30 | 293 | 25 | 284 | 3.10e-51 | 171 |
| Msa0699760 | AT2G18800.1 | 35.125 | 279 | 154 | 5 | 31 | 291 | 28 | 297 | 3.46e-51 | 172 |
| Msa0699760 | AT1G65310.1 | 39.062 | 256 | 143 | 6 | 39 | 291 | 37 | 282 | 7.51e-51 | 170 |
| Msa0699760 | AT1G65310.2 | 39.062 | 256 | 143 | 6 | 39 | 291 | 59 | 304 | 1.20e-50 | 171 |
| Msa0699760 | AT4G28850.1 | 33.898 | 295 | 177 | 7 | 6 | 290 | 1 | 287 | 7.12e-50 | 168 |
| Msa0699760 | AT4G03210.2 | 37.302 | 252 | 147 | 6 | 44 | 290 | 11 | 256 | 9.58e-50 | 167 |
| Msa0699760 | AT2G14620.2 | 39.407 | 236 | 131 | 5 | 62 | 292 | 18 | 246 | 2.00e-49 | 166 |
| Msa0699760 | AT2G14620.3 | 39.648 | 227 | 125 | 5 | 71 | 292 | 16 | 235 | 7.82e-48 | 161 |
| Msa0699760 | AT4G25820.1 | 33.692 | 279 | 172 | 5 | 16 | 292 | 20 | 287 | 1.12e-47 | 162 |
| Msa0699760 | AT3G48580.1 | 33.471 | 242 | 134 | 10 | 53 | 290 | 55 | 273 | 6.34e-35 | 129 |
| Msa0699760 | AT3G48580.3 | 33.761 | 234 | 128 | 10 | 61 | 290 | 4 | 214 | 4.20e-33 | 122 |
| Msa0699760 | AT2G36870.2 | 38.889 | 180 | 93 | 3 | 1 | 165 | 1 | 178 | 1.94e-32 | 119 |
| Msa0699760 | AT3G48580.2 | 29.752 | 242 | 123 | 11 | 53 | 290 | 55 | 253 | 2.56e-21 | 92.0 |
Find 111 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATTCAGACCAATGTTTA+TGG | 0.234371 | 4_4:-70527064 | Msa0699760:CDS |
| ATCTAGAAATTTACCTATTA+CGG | 0.254701 | 4_4:-70527921 | Msa0699760:CDS |
| TAGGACAAGGTCGGAGAATT+TGG | 0.260987 | 4_4:+70525979 | None:intergenic |
| TGACTCTGTATGCGACTATA+TGG | 0.266092 | 4_4:-70526069 | Msa0699760:CDS |
| TCTCATGATATTTACCTTCA+TGG | 0.300530 | 4_4:-70527685 | Msa0699760:CDS |
| GTCCGTGTAACTTCTCTAAT+AGG | 0.305543 | 4_4:+70526127 | None:intergenic |
| GAAGGGTACACACCTTTGTT+TGG | 0.310448 | 4_4:-70527890 | Msa0699760:CDS |
| AAGAATAAAACAATACTATT+AGG | 0.310845 | 4_4:+70525284 | None:intergenic |
| ATTGAAAACCCTGAGGTATA+TGG | 0.338504 | 4_4:+70525380 | None:intergenic |
| AAGGGTACACACCTTTGTTT+GGG | 0.339045 | 4_4:-70527889 | Msa0699760:CDS |
| CCTTCATCAAAGGCCGTAAT+AGG | 0.340035 | 4_4:+70527908 | None:intergenic |
| ATTCATGGGTTATTCTCATA+TGG | 0.345426 | 4_4:-70527990 | Msa0699760:exon |
| AAATCAAAATGGAGAACTTC+AGG | 0.359114 | 4_4:-70525862 | Msa0699760:CDS |
| TCCAGAGAATACTGTATTGA+TGG | 0.361854 | 4_4:+70526975 | None:intergenic |
| AGTTCCAAATCCATTCCTTC+TGG | 0.389842 | 4_4:-70525902 | Msa0699760:CDS |
| CTTACTGTTACGACAAAATC+AGG | 0.399238 | 4_4:-70525820 | Msa0699760:CDS |
| AACACCAGAAGGAATGGATT+TGG | 0.411428 | 4_4:+70525898 | None:intergenic |
| GATTAATTTCATCCTTGATT+CGG | 0.413783 | 4_4:-70525625 | Msa0699760:three_prime_UTR |
| TAGATAGAAAGAGAGAGGTT+TGG | 0.416524 | 4_4:+70528112 | None:intergenic |
| GAAACATTAGAGGCAAAGAT+TGG | 0.421060 | 4_4:-70527087 | Msa0699760:CDS |
| CCTATTACGGCCTTTGATGA+AGG | 0.421584 | 4_4:-70527908 | Msa0699760:CDS |
| CATGAGTTATTTAATGAAGT+AGG | 0.439554 | 4_4:-70525346 | Msa0699760:three_prime_UTR |
| CTGCCGCTGCCGAATGTGAC+AGG | 0.447195 | 4_4:+70525728 | None:intergenic |
| CTTAGCCTTTCAGCTTCTTG+TGG | 0.450432 | 4_4:+70525761 | None:intergenic |
| GAGGTATATGGTCTAAATAC+AGG | 0.451985 | 4_4:+70525392 | None:intergenic |
| TACAGAGTCATAGGCTTGGC+AGG | 0.452062 | 4_4:+70526082 | None:intergenic |
| CTCATGATATTTACCTTCAT+GGG | 0.454019 | 4_4:-70527684 | Msa0699760:CDS |
| TCTCTATACACCACGAAGAA+AGG | 0.459945 | 4_4:+70525571 | None:intergenic |
| CTTTCTTTAGATGAAAGAAC+AGG | 0.466457 | 4_4:-70527824 | Msa0699760:intron |
| TCTTTCCTCTCTGCCAATGC+TGG | 0.468353 | 4_4:+70527030 | None:intergenic |
| GTATTTAGACCATATACCTC+AGG | 0.468384 | 4_4:-70525389 | Msa0699760:three_prime_UTR |
| ATGTGTATAGTTCATACCTT+AGG | 0.468895 | 4_4:-70525473 | Msa0699760:three_prime_UTR |
| TCCATCAATACAGTATTCTC+TGG | 0.470704 | 4_4:-70526976 | Msa0699760:CDS |
| TTCTCCGACCTTGTCCTACA+TGG | 0.473548 | 4_4:-70525974 | Msa0699760:CDS |
| TCGGAGAATTTGGCAACATA+TGG | 0.479047 | 4_4:+70525989 | None:intergenic |
| ATAGTCGCATACAGAGTCAT+AGG | 0.480165 | 4_4:+70526073 | None:intergenic |
| CATCAGATTGGGCTACCAAT+GGG | 0.480813 | 4_4:-70526042 | Msa0699760:CDS |
| GATTCGGTTCGATTACCACC+TGG | 0.482451 | 4_4:-70525609 | Msa0699760:three_prime_UTR |
| AACGTCTTTGTTCATAGAGA+TGG | 0.488359 | 4_4:-70527860 | Msa0699760:CDS |
| ACAAAATACCTGGGAACCTA+AGG | 0.498007 | 4_4:+70525457 | None:intergenic |
| CAGACCAATGTTTATGGCAA+TGG | 0.498239 | 4_4:-70527058 | Msa0699760:CDS |
| AAATTCGACCCTGTCACATT+CGG | 0.498531 | 4_4:-70525737 | Msa0699760:CDS |
| AGTTCATACCTTAGGTTCCC+AGG | 0.502051 | 4_4:-70525465 | Msa0699760:three_prime_UTR |
| GCATCAGATTGGGCTACCAA+TGG | 0.503583 | 4_4:-70526043 | Msa0699760:CDS |
| GAGAGGAAAGATATGGTCTC+TGG | 0.504612 | 4_4:-70527018 | Msa0699760:CDS |
| TATAGAGAGAGAAAGAAAGA+GGG | 0.505042 | 4_4:-70525556 | Msa0699760:three_prime_UTR |
| ACTCAAAATCTATTTCATCA+TGG | 0.506747 | 4_4:+70527116 | None:intergenic |
| CACAAGAAGCTGAAAGGCTA+AGG | 0.507826 | 4_4:-70525760 | Msa0699760:CDS |
| CACTTGGCTACATGCTCGAT+TGG | 0.512580 | 4_4:+70525938 | None:intergenic |
| CTATATGGGATGCATCAGAT+TGG | 0.512671 | 4_4:-70526054 | Msa0699760:CDS |
| GACTCTGTATGCGACTATAT+GGG | 0.515315 | 4_4:-70526068 | Msa0699760:CDS |
| GTATAGAGAGAGAAAGAAAG+AGG | 0.517651 | 4_4:-70525557 | Msa0699760:three_prime_UTR |
| AAAGATAGATAGAAAGAGAG+AGG | 0.519824 | 4_4:+70528107 | None:intergenic |
| CTATTACGGCCTTTGATGAA+GGG | 0.522479 | 4_4:-70527907 | Msa0699760:CDS |
| GACATGAATAACAAAATACC+TGG | 0.525056 | 4_4:+70525447 | None:intergenic |
| TATATGGGATGCATCAGATT+GGG | 0.525648 | 4_4:-70526053 | Msa0699760:CDS |
| TGGTGTAACACCAGAAGGAA+TGG | 0.534559 | 4_4:+70525892 | None:intergenic |
| TATTGATGGAAATCCTCTGC+AGG | 0.536591 | 4_4:+70526989 | None:intergenic |
| GGCAATGGTAGCACCAGCAT+TGG | 0.536609 | 4_4:-70527043 | Msa0699760:CDS |
| ATTCGGTTCGATTACCACCT+GGG | 0.536843 | 4_4:-70525608 | Msa0699760:three_prime_UTR |
| TTGTATCTGCAGATGTCAAA+TGG | 0.539892 | 4_4:-70527157 | Msa0699760:intron |
| AGCGATAGAGAGGTGCTAGC+TGG | 0.541569 | 4_4:+70528157 | None:intergenic |
| GTGGTAATCGAACCGAATCA+AGG | 0.543457 | 4_4:+70525613 | None:intergenic |
| GAGGAGAAAGGCAGAGACAA+AGG | 0.544653 | 4_4:+70528188 | None:intergenic |
| AAACAGGGTAACGAAGAAGA+AGG | 0.545127 | 4_4:+70528078 | None:intergenic |
| CGTGGTTTCCTCTGCTGTGG+TGG | 0.546130 | 4_4:+70525684 | None:intergenic |
| CTGGTTATTAGAGAGGAGAA+AGG | 0.550010 | 4_4:+70528176 | None:intergenic |
| CGCATACAGAGTCATAGGCT+TGG | 0.550129 | 4_4:+70526078 | None:intergenic |
| TGTTCATAGAGATGGCAAAT+CGG | 0.550991 | 4_4:-70527852 | Msa0699760:CDS |
| TGTACTGGTGTAACACCAGA+AGG | 0.555810 | 4_4:+70525887 | None:intergenic |
| GACCCTGTCACATTCGGCAG+CGG | 0.558184 | 4_4:-70525731 | Msa0699760:CDS |
| ACATTAGAGGCAAAGATTGG+AGG | 0.561664 | 4_4:-70527084 | Msa0699760:CDS |
| GGATTGATCACGCACTCTGA+TGG | 0.565213 | 4_4:+70525782 | None:intergenic |
| AAGCACTGAAATACCCATGA+AGG | 0.569254 | 4_4:+70527671 | None:intergenic |
| AACAGCTAGAAGCGATAGAG+AGG | 0.569345 | 4_4:+70528147 | None:intergenic |
| ATTTCTAGATGAAGCAGAAG+CGG | 0.570082 | 4_4:+70527934 | None:intergenic |
| ATTGGCAGAGAGGAAAGATA+TGG | 0.574281 | 4_4:-70527025 | Msa0699760:CDS |
| ACTTTGAGCAGTGTCACACT+TGG | 0.575287 | 4_4:+70525922 | None:intergenic |
| CTGCGTGGTTTCCTCTGCTG+TGG | 0.577797 | 4_4:+70525681 | None:intergenic |
| TTACCTGCTGATTACACTGC+CGG | 0.582709 | 4_4:-70527640 | Msa0699760:CDS |
| ATAGAGAGAGAAAGAAAGAG+GGG | 0.583848 | 4_4:-70525555 | Msa0699760:three_prime_UTR |
| TATTTAGACCATATACCTCA+GGG | 0.591028 | 4_4:-70525388 | Msa0699760:three_prime_UTR |
| ACACCGGCAGTGTAATCAGC+AGG | 0.593919 | 4_4:+70527637 | None:intergenic |
| AGGTGTGTACCCTTCATCAA+AGG | 0.593957 | 4_4:+70527898 | None:intergenic |
| GCTACCATTGCCATAAACAT+TGG | 0.602231 | 4_4:+70527054 | None:intergenic |
| TCTCTGGTTTGATCCTGCAG+AGG | 0.605207 | 4_4:-70527002 | Msa0699760:CDS |
| GTGCTAGCTGGTTATTAGAG+AGG | 0.605259 | 4_4:+70528169 | None:intergenic |
| AAACGACACCACCACAGCAG+AGG | 0.605813 | 4_4:-70525692 | Msa0699760:CDS |
| TCAATCCACAAGAAGCTGAA+AGG | 0.606328 | 4_4:-70525766 | Msa0699760:CDS |
| TTTATTAGTATAGAAGTGTG+TGG | 0.607517 | 4_4:+70528031 | None:intergenic |
| AGTTACACGGACAAAATCGA+TGG | 0.608259 | 4_4:-70526116 | Msa0699760:CDS |
| TCAGATTGGGCTACCAATGG+GGG | 0.608759 | 4_4:-70526040 | Msa0699760:CDS |
| GATCGACTGCACAACCATGT+AGG | 0.610773 | 4_4:+70525960 | None:intergenic |
| TGCCGCTGCCGAATGTGACA+GGG | 0.625854 | 4_4:+70525729 | None:intergenic |
| GGATGAAATTAATCTTCGTG+TGG | 0.627643 | 4_4:+70525634 | None:intergenic |
| ATCAGATTGGGCTACCAATG+GGG | 0.630175 | 4_4:-70526041 | Msa0699760:CDS |
| TTGATCACGCACTCTGATGG+AGG | 0.630279 | 4_4:+70525785 | None:intergenic |
| CTGCACAACCATGTAGGACA+AGG | 0.642790 | 4_4:+70525966 | None:intergenic |
| ACAGAGTCATAGGCTTGGCA+GGG | 0.644912 | 4_4:+70526083 | None:intergenic |
| GGCAGCGGCAGACATCGTCA+TGG | 0.658799 | 4_4:-70525716 | Msa0699760:CDS |
| ACATGAATAACAAAATACCT+GGG | 0.660009 | 4_4:+70525448 | None:intergenic |
| ACAACCATGTAGGACAAGGT+CGG | 0.664828 | 4_4:+70525970 | None:intergenic |
| AAAATGAAACAGCTTCTGCG+TGG | 0.667909 | 4_4:+70525666 | None:intergenic |
| GAGAAAGGCAGAGACAAAGG+AGG | 0.668200 | 4_4:+70528191 | None:intergenic |
| GTTACACGGACAAAATCGAT+GGG | 0.671108 | 4_4:-70526115 | Msa0699760:CDS |
| TTCCTATTAGAGAAGTTACA+CGG | 0.672955 | 4_4:-70526129 | Msa0699760:CDS |
| TAGCACCAGCATTGGCAGAG+AGG | 0.673176 | 4_4:-70527035 | Msa0699760:CDS |
| AGGGTACACACCTTTGTTTG+GGG | 0.683056 | 4_4:-70527888 | Msa0699760:CDS |
| ACGTTATTATCCCCAAACAA+AGG | 0.684297 | 4_4:+70527878 | None:intergenic |
| ATAATTTATTGAAAACCCTG+AGG | 0.691845 | 4_4:+70525373 | None:intergenic |
| ACACGGACAAAATCGATGGG+AGG | 0.707346 | 4_4:-70526112 | Msa0699760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAGAGACAAAAAT+AGG | + | chr4_4:70525991-70526010 | None:intergenic | 15.0% |
| !! | AAAAATCCAATAAAAGTAAA+AGG | - | chr4_4:70526302-70526321 | Msa0699760:intron | 15.0% |
| !!! | ATTATTCCTTTTACTTTTAT+TGG | + | chr4_4:70526311-70526330 | None:intergenic | 15.0% |
| !! | AAAAAAAAATATTGCATGAA+AGG | + | chr4_4:70526697-70526716 | None:intergenic | 15.0% |
| !!! | AAAGAAAAAGCATAGAAAAT+AGG | + | chr4_4:70525549-70525568 | None:intergenic | 20.0% |
| !! | ATCTAGAAATTTACCTATTA+CGG | - | chr4_4:70525582-70525601 | Msa0699760:three_prime_UTR | 20.0% |
| !!! | GGATAAAGTATTAATCTTTT+TGG | - | chr4_4:70525753-70525772 | Msa0699760:CDS | 20.0% |
| !!! | TGAAATAGATTTTGAGTTTT+TGG | - | chr4_4:70526393-70526412 | Msa0699760:intron | 20.0% |
| !!! | GAAATAGATTTTGAGTTTTT+GGG | - | chr4_4:70526394-70526413 | Msa0699760:intron | 20.0% |
| !! | TAGTATTACTAAGAAAATGT+AGG | + | chr4_4:70526647-70526666 | None:intergenic | 20.0% |
| !!! | CAATAAAGATCTTTGTTTAT+AGG | - | chr4_4:70526737-70526756 | Msa0699760:intron | 20.0% |
| !!! | CGAATATGATAATTTTGATA+TGG | - | chr4_4:70527984-70528003 | Msa0699760:CDS | 20.0% |
| !! | TTTATTAGTATAGAAGTGTG+TGG | + | chr4_4:70525475-70525494 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTTTTCTGTTGTT+GGG | - | chr4_4:70525769-70525788 | Msa0699760:CDS | 25.0% |
| ! | AAAAGCTTCATAAACAGATA+AGG | + | chr4_4:70525945-70525964 | None:intergenic | 25.0% |
| ! | ACTCAAAATCTATTTCATCA+TGG | + | chr4_4:70526390-70526409 | None:intergenic | 25.0% |
| !! | TTTGGAATGTAAAAATCCAA+AGG | + | chr4_4:70526617-70526636 | None:intergenic | 25.0% |
| ! | GAAAATGTAGGTATATTCTT+TGG | + | chr4_4:70526635-70526654 | None:intergenic | 25.0% |
| ! | AAAGATCTTTATTGCATGAA+AGG | + | chr4_4:70526731-70526750 | None:intergenic | 25.0% |
| !! | AAGGTATCTATATATGACTT+GGG | + | chr4_4:70526844-70526863 | None:intergenic | 25.0% |
| ! | TTTAGTTGTTTATCCAAACA+GGG | + | chr4_4:70526895-70526914 | None:intergenic | 25.0% |
| ! | ATTTAGTTGTTTATCCAAAC+AGG | + | chr4_4:70526896-70526915 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAATCAGCTTA+TGG | - | chr4_4:70527047-70527066 | Msa0699760:CDS | 25.0% |
| ! | AGATGCAAGTAAATATTTGT+CGG | + | chr4_4:70527112-70527131 | None:intergenic | 25.0% |
| ! | TCAAAACATCGTAATTAACA+TGG | + | chr4_4:70527280-70527299 | None:intergenic | 25.0% |
| ! | GAAAACAGGAATACAATATT+AGG | + | chr4_4:70527327-70527346 | None:intergenic | 25.0% |
| ! | ACCAGTACAAAAAATCAAAA+TGG | - | chr4_4:70527630-70527649 | Msa0699760:CDS | 25.0% |
| !!! | TCCATTTTGATTTTTTGTAC+TGG | + | chr4_4:70527634-70527653 | None:intergenic | 25.0% |
| ! | GATTAATTTCATCCTTGATT+CGG | - | chr4_4:70527878-70527897 | Msa0699760:CDS | 25.0% |
| !!! | AATTTTGATATGGTTCCTTT+TGG | - | chr4_4:70527994-70528013 | Msa0699760:exon | 25.0% |
| ! | ACATGAATAACAAAATACCT+GGG | + | chr4_4:70528058-70528077 | None:intergenic | 25.0% |
| ! | ATAATTTATTGAAAACCCTG+AGG | + | chr4_4:70528133-70528152 | None:intergenic | 25.0% |
| ! | CATGAGTTATTTAATGAAGT+AGG | - | chr4_4:70528157-70528176 | Msa0699760:five_prime_UTR | 25.0% |
| AAAGATAGATAGAAAGAGAG+AGG | + | chr4_4:70525399-70525418 | None:intergenic | 30.0% | |
| AAGAAGTGATGCAAAAAACA+GGG | + | chr4_4:70525443-70525462 | None:intergenic | 30.0% | |
| AAAGAAGTGATGCAAAAAAC+AGG | + | chr4_4:70525444-70525463 | None:intergenic | 30.0% | |
| ! | ATTCATGGGTTATTCTCATA+TGG | - | chr4_4:70525513-70525532 | Msa0699760:three_prime_UTR | 30.0% |
| CTTTCTTTAGATGAAAGAAC+AGG | - | chr4_4:70525679-70525698 | Msa0699760:CDS | 30.0% | |
| TTGATGTTACTATGATCTTG+TGG | - | chr4_4:70525732-70525751 | Msa0699760:CDS | 30.0% | |
| !!! | CTTTTTGGTTTTTCTGTTGT+TGG | - | chr4_4:70525768-70525787 | Msa0699760:CDS | 30.0% |
| TCTCATGATATTTACCTTCA+TGG | - | chr4_4:70525818-70525837 | Msa0699760:CDS | 30.0% | |
| CTCATGATATTTACCTTCAT+GGG | - | chr4_4:70525819-70525838 | Msa0699760:CDS | 30.0% | |
| ATAAAAAGCAACAACAACAC+CGG | + | chr4_4:70525885-70525904 | None:intergenic | 30.0% | |
| CTTGAGAATATAATCCGATA+AGG | - | chr4_4:70526034-70526053 | Msa0699760:CDS | 30.0% | |
| TATTCAGCTGTTGAAATTCA+AGG | - | chr4_4:70526077-70526096 | Msa0699760:CDS | 30.0% | |
| ACTGATTGTGACTAAAACTT+AGG | - | chr4_4:70526191-70526210 | Msa0699760:intron | 30.0% | |
| ! | CAAGGTATCTATATATGACT+TGG | + | chr4_4:70526845-70526864 | None:intergenic | 30.0% |
| GATGCAAGTAAATATTTGTC+GGG | + | chr4_4:70527111-70527130 | None:intergenic | 30.0% | |
| TGAAGATGCTTAAAATCTGT+CGG | - | chr4_4:70527144-70527163 | Msa0699760:CDS | 30.0% | |
| GGCTTATAATCAAATCATCT+TGG | - | chr4_4:70527234-70527253 | Msa0699760:intron | 30.0% | |
| TCTACATAAAATCTGCACAA+GGG | + | chr4_4:70527349-70527368 | None:intergenic | 30.0% | |
| ATCTACATAAAATCTGCACA+AGG | + | chr4_4:70527350-70527369 | None:intergenic | 30.0% | |
| TTCCTATTAGAGAAGTTACA+CGG | - | chr4_4:70527374-70527393 | Msa0699760:intron | 30.0% | |
| AAATCAAAATGGAGAACTTC+AGG | - | chr4_4:70527641-70527660 | Msa0699760:CDS | 30.0% | |
| !! | GAAGCTGTTTCATTTTAAGA+AGG | - | chr4_4:70527844-70527863 | Msa0699760:CDS | 30.0% |
| AAAAGAAAAATTAACCCAGG+TGG | + | chr4_4:70527912-70527931 | None:intergenic | 30.0% | |
| AGGAAAAGAAAAATTAACCC+AGG | + | chr4_4:70527915-70527934 | None:intergenic | 30.0% | |
| ! | TTTTTCTTTTCCTTTCTTCG+TGG | - | chr4_4:70527922-70527941 | Msa0699760:CDS | 30.0% |
| TATAGAGAGAGAAAGAAAGA+GGG | - | chr4_4:70527947-70527966 | Msa0699760:CDS | 30.0% | |
| ATGTGTATAGTTCATACCTT+AGG | - | chr4_4:70528030-70528049 | Msa0699760:five_prime_UTR | 30.0% | |
| GACATGAATAACAAAATACC+TGG | + | chr4_4:70528059-70528078 | None:intergenic | 30.0% | |
| TATTTAGACCATATACCTCA+GGG | - | chr4_4:70528115-70528134 | Msa0699760:five_prime_UTR | 30.0% | |
| TAGATAGAAAGAGAGAGGTT+TGG | + | chr4_4:70525394-70525413 | None:intergenic | 35.0% | |
| ! | ATTTCTAGATGAAGCAGAAG+CGG | + | chr4_4:70525572-70525591 | None:intergenic | 35.0% |
| ACGTTATTATCCCCAAACAA+AGG | + | chr4_4:70525628-70525647 | None:intergenic | 35.0% | |
| AACGTCTTTGTTCATAGAGA+TGG | - | chr4_4:70525643-70525662 | Msa0699760:three_prime_UTR | 35.0% | |
| TGTTCATAGAGATGGCAAAT+CGG | - | chr4_4:70525651-70525670 | Msa0699760:exon | 35.0% | |
| AACAGGTTTGAAAATCTGCA+TGG | - | chr4_4:70525696-70525715 | Msa0699760:CDS | 35.0% | |
| ACAGGTTTGAAAATCTGCAT+GGG | - | chr4_4:70525697-70525716 | Msa0699760:CDS | 35.0% | |
| AATTTCAACAGTGACGTTTC+TGG | + | chr4_4:70526256-70526275 | None:intergenic | 35.0% | |
| TTGTATCTGCAGATGTCAAA+TGG | - | chr4_4:70526346-70526365 | Msa0699760:intron | 35.0% | |
| !! | GAGTTTTTGGGAAACATTAG+AGG | - | chr4_4:70526406-70526425 | Msa0699760:intron | 35.0% |
| GAAACATTAGAGGCAAAGAT+TGG | - | chr4_4:70526416-70526435 | Msa0699760:intron | 35.0% | |
| AGGATTCAGACCAATGTTTA+TGG | - | chr4_4:70526439-70526458 | Msa0699760:intron | 35.0% | |
| TCCATCAATACAGTATTCTC+TGG | - | chr4_4:70526527-70526546 | Msa0699760:intron | 35.0% | |
| TCCAGAGAATACTGTATTGA+TGG | + | chr4_4:70526531-70526550 | None:intergenic | 35.0% | |
| AACCTCATACATACCATATC+TGG | - | chr4_4:70526587-70526606 | Msa0699760:intron | 35.0% | |
| AACCAGATATGGTATGTATG+AGG | + | chr4_4:70526592-70526611 | None:intergenic | 35.0% | |
| !!! | ATCTAGCTGTTTTTTGCTGT+TGG | - | chr4_4:70526770-70526789 | Msa0699760:intron | 35.0% |
| !!! | TCTAGCTGTTTTTTGCTGTT+GGG | - | chr4_4:70526771-70526790 | Msa0699760:intron | 35.0% |
| AAGCAACTTATGAAAACAGC+TGG | + | chr4_4:70527022-70527041 | None:intergenic | 35.0% | |
| TAAATATTTGTCGGGCTATC+TGG | + | chr4_4:70527103-70527122 | None:intergenic | 35.0% | |
| CAACTGATCAAACATTCACA+CGG | + | chr4_4:70527184-70527203 | None:intergenic | 35.0% | |
| TATATGGGATGCATCAGATT+GGG | - | chr4_4:70527450-70527469 | Msa0699760:intron | 35.0% | |
| CTTACTGTTACGACAAAATC+AGG | - | chr4_4:70527683-70527702 | Msa0699760:CDS | 35.0% | |
| GGATGAAATTAATCTTCGTG+TGG | + | chr4_4:70527872-70527891 | None:intergenic | 35.0% | |
| GTATAGAGAGAGAAAGAAAG+AGG | - | chr4_4:70527946-70527965 | Msa0699760:CDS | 35.0% | |
| ATAGAGAGAGAAAGAAAGAG+GGG | - | chr4_4:70527948-70527967 | Msa0699760:CDS | 35.0% | |
| ! | TTTGATATGGTTCCTTTTGG+TGG | - | chr4_4:70527997-70528016 | Msa0699760:exon | 35.0% |
| GAGGTATATGGTCTAAATAC+AGG | + | chr4_4:70528114-70528133 | None:intergenic | 35.0% | |
| GTATTTAGACCATATACCTC+AGG | - | chr4_4:70528114-70528133 | Msa0699760:five_prime_UTR | 35.0% | |
| ATTGAAAACCCTGAGGTATA+TGG | + | chr4_4:70528126-70528145 | None:intergenic | 35.0% | |
| CTGGTTATTAGAGAGGAGAA+AGG | + | chr4_4:70525330-70525349 | None:intergenic | 40.0% | |
| AAACAGGGTAACGAAGAAGA+AGG | + | chr4_4:70525428-70525447 | None:intergenic | 40.0% | |
| CTATTACGGCCTTTGATGAA+GGG | - | chr4_4:70525596-70525615 | Msa0699760:three_prime_UTR | 40.0% | |
| ! | AAGGGTACACACCTTTGTTT+GGG | - | chr4_4:70525614-70525633 | Msa0699760:three_prime_UTR | 40.0% |
| !! | AAGCACTGAAATACCCATGA+AGG | + | chr4_4:70525835-70525854 | None:intergenic | 40.0% |
| ACATTAGAGGCAAAGATTGG+AGG | - | chr4_4:70526419-70526438 | Msa0699760:intron | 40.0% | |
| CAGACCAATGTTTATGGCAA+TGG | - | chr4_4:70526445-70526464 | Msa0699760:intron | 40.0% | |
| GCTACCATTGCCATAAACAT+TGG | + | chr4_4:70526452-70526471 | None:intergenic | 40.0% | |
| ATTGGCAGAGAGGAAAGATA+TGG | - | chr4_4:70526478-70526497 | Msa0699760:intron | 40.0% | |
| TATTGATGGAAATCCTCTGC+AGG | + | chr4_4:70526517-70526536 | None:intergenic | 40.0% | |
| ! | TACCATATCTGGTTCACCTT+TGG | - | chr4_4:70526598-70526617 | Msa0699760:intron | 40.0% |
| ATCCAAAGGTGAACCAGATA+TGG | + | chr4_4:70526603-70526622 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGCTGTTGGGTTTG+TGG | - | chr4_4:70526778-70526797 | Msa0699760:intron | 40.0% |
| ATGTTTGATCAGTTGACAGC+AGG | - | chr4_4:70527189-70527208 | Msa0699760:intron | 40.0% | |
| TGTTTGATCAGTTGACAGCA+GGG | - | chr4_4:70527190-70527209 | Msa0699760:intron | 40.0% | |
| ATTTGATTATAAGCCCCCGA+TGG | + | chr4_4:70527229-70527248 | None:intergenic | 40.0% | |
| AAATCTGCACAAGGGAAAAC+AGG | + | chr4_4:70527341-70527360 | None:intergenic | 40.0% | |
| GTCCGTGTAACTTCTCTAAT+AGG | + | chr4_4:70527379-70527398 | None:intergenic | 40.0% | |
| AGTTACACGGACAAAATCGA+TGG | - | chr4_4:70527387-70527406 | Msa0699760:intron | 40.0% | |
| GTTACACGGACAAAATCGAT+GGG | - | chr4_4:70527388-70527407 | Msa0699760:intron | 40.0% | |
| ATAGTCGCATACAGAGTCAT+AGG | + | chr4_4:70527433-70527452 | None:intergenic | 40.0% | |
| TGACTCTGTATGCGACTATA+TGG | - | chr4_4:70527434-70527453 | Msa0699760:intron | 40.0% | |
| GACTCTGTATGCGACTATAT+GGG | - | chr4_4:70527435-70527454 | Msa0699760:intron | 40.0% | |
| CTATATGGGATGCATCAGAT+TGG | - | chr4_4:70527449-70527468 | Msa0699760:intron | 40.0% | |
| TCGGAGAATTTGGCAACATA+TGG | + | chr4_4:70527517-70527536 | None:intergenic | 40.0% | |
| AGTTCCAAATCCATTCCTTC+TGG | - | chr4_4:70527601-70527620 | Msa0699760:intron | 40.0% | |
| ! | AACACCAGAAGGAATGGATT+TGG | + | chr4_4:70527608-70527627 | None:intergenic | 40.0% |
| TCAATCCACAAGAAGCTGAA+AGG | - | chr4_4:70527737-70527756 | Msa0699760:intron | 40.0% | |
| AAATTCGACCCTGTCACATT+CGG | - | chr4_4:70527766-70527785 | Msa0699760:intron | 40.0% | |
| AAAATGAAACAGCTTCTGCG+TGG | + | chr4_4:70527840-70527859 | None:intergenic | 40.0% | |
| TCTCTATACACCACGAAGAA+AGG | + | chr4_4:70527935-70527954 | None:intergenic | 40.0% | |
| !! | ATATGGTTCCTTTTGGTGGT+GGG | - | chr4_4:70528001-70528020 | Msa0699760:exon | 40.0% |
| ACAAAATACCTGGGAACCTA+AGG | + | chr4_4:70528049-70528068 | None:intergenic | 40.0% | |
| GTGCTAGCTGGTTATTAGAG+AGG | + | chr4_4:70525337-70525356 | None:intergenic | 45.0% | |
| AACAGCTAGAAGCGATAGAG+AGG | + | chr4_4:70525359-70525378 | None:intergenic | 45.0% | |
| CCTTCATCAAAGGCCGTAAT+AGG | + | chr4_4:70525598-70525617 | None:intergenic | 45.0% | |
| CCTATTACGGCCTTTGATGA+AGG | - | chr4_4:70525595-70525614 | Msa0699760:three_prime_UTR | 45.0% | |
| AGGTGTGTACCCTTCATCAA+AGG | + | chr4_4:70525608-70525627 | None:intergenic | 45.0% | |
| ! | GAAGGGTACACACCTTTGTT+TGG | - | chr4_4:70525613-70525632 | Msa0699760:three_prime_UTR | 45.0% |
| ! | AGGGTACACACCTTTGTTTG+GGG | - | chr4_4:70525615-70525634 | Msa0699760:three_prime_UTR | 45.0% |
| ! | TGTTGTTGGGTTGTGTTTGC+AGG | - | chr4_4:70525782-70525801 | Msa0699760:CDS | 45.0% |
| ! | TTACCTGCTGATTACACTGC+CGG | - | chr4_4:70525863-70525882 | Msa0699760:CDS | 45.0% |
| AGTCACAATCAGTGAGCATG+CGG | + | chr4_4:70526184-70526203 | None:intergenic | 45.0% | |
| ! | TTCAACAGTGACGTTTCTGG+TGG | + | chr4_4:70526253-70526272 | None:intergenic | 45.0% |
| GAGAGGAAAGATATGGTCTC+TGG | - | chr4_4:70526485-70526504 | Msa0699760:intron | 45.0% | |
| AACAGGGCAAATCGAATGTG+TGG | + | chr4_4:70526879-70526898 | None:intergenic | 45.0% | |
| ! | CACATTCGATTTGCCCTGTT+TGG | - | chr4_4:70526879-70526898 | Msa0699760:intron | 45.0% |
| GGGAATCCATATCCTACCAT+CGG | - | chr4_4:70527210-70527229 | Msa0699760:intron | 45.0% | |
| GGAATCCATATCCTACCATC+GGG | - | chr4_4:70527211-70527230 | Msa0699760:intron | 45.0% | |
| GAATCCATATCCTACCATCG+GGG | - | chr4_4:70527212-70527231 | Msa0699760:intron | 45.0% | |
| AATCCATATCCTACCATCGG+GGG | - | chr4_4:70527213-70527232 | Msa0699760:intron | 45.0% | |
| CATCAGATTGGGCTACCAAT+GGG | - | chr4_4:70527461-70527480 | Msa0699760:intron | 45.0% | |
| ATCAGATTGGGCTACCAATG+GGG | - | chr4_4:70527462-70527481 | Msa0699760:intron | 45.0% | |
| AACTCTGTACTTTCCCCCAT+TGG | + | chr4_4:70527479-70527498 | None:intergenic | 45.0% | |
| TAGGACAAGGTCGGAGAATT+TGG | + | chr4_4:70527527-70527546 | None:intergenic | 45.0% | |
| ACAACCATGTAGGACAAGGT+CGG | + | chr4_4:70527536-70527555 | None:intergenic | 45.0% | |
| ACTTTGAGCAGTGTCACACT+TGG | + | chr4_4:70527584-70527603 | None:intergenic | 45.0% | |
| TGGTGTAACACCAGAAGGAA+TGG | + | chr4_4:70527614-70527633 | None:intergenic | 45.0% | |
| ! | TGTACTGGTGTAACACCAGA+AGG | + | chr4_4:70527619-70527638 | None:intergenic | 45.0% |
| ! | CTTAGCCTTTCAGCTTCTTG+TGG | + | chr4_4:70527745-70527764 | None:intergenic | 45.0% |
| CACAAGAAGCTGAAAGGCTA+AGG | - | chr4_4:70527743-70527762 | Msa0699760:intron | 45.0% | |
| GTGGTAATCGAACCGAATCA+AGG | + | chr4_4:70527893-70527912 | None:intergenic | 45.0% | |
| ! | ATTCGGTTCGATTACCACCT+GGG | - | chr4_4:70527895-70527914 | Msa0699760:CDS | 45.0% |
| ! | GATATGGTTCCTTTTGGTGG+TGG | - | chr4_4:70528000-70528019 | Msa0699760:exon | 45.0% |
| !!! | TATGGTTCCTTTTGGTGGTG+GGG | - | chr4_4:70528002-70528021 | Msa0699760:exon | 45.0% |
| AGTTCATACCTTAGGTTCCC+AGG | - | chr4_4:70528038-70528057 | Msa0699760:five_prime_UTR | 45.0% | |
| !! | TAAAAAAAAAATATAATTCA+TGG | - | chr4_4:70525498-70525517 | Msa0699760:three_prime_UTR | 5.0% |
| !! | AAAAAAAAAATATAATTCAT+GGG | - | chr4_4:70525499-70525518 | Msa0699760:three_prime_UTR | 5.0% |
| GAGAAAGGCAGAGACAAAGG+AGG | + | chr4_4:70525315-70525334 | None:intergenic | 50.0% | |
| GAGGAGAAAGGCAGAGACAA+AGG | + | chr4_4:70525318-70525337 | None:intergenic | 50.0% | |
| TGGGTTGTGTTTGCAGGTTC+TGG | - | chr4_4:70525788-70525807 | Msa0699760:CDS | 50.0% | |
| TCCGATAAGGTCTCAGTCTC+AGG | - | chr4_4:70526047-70526066 | Msa0699760:CDS | 50.0% | |
| CCCTGAGACTGAGACCTTAT+CGG | + | chr4_4:70526051-70526070 | None:intergenic | 50.0% | |
| CCGATAAGGTCTCAGTCTCA+GGG | - | chr4_4:70526048-70526067 | Msa0699760:CDS | 50.0% | |
| AATCAGTGAGCATGCGGTTG+AGG | + | chr4_4:70526178-70526197 | None:intergenic | 50.0% | |
| TCTTTCCTCTCTGCCAATGC+TGG | + | chr4_4:70526476-70526495 | None:intergenic | 50.0% | |
| ! | TCTCTGGTTTGATCCTGCAG+AGG | - | chr4_4:70526501-70526520 | Msa0699760:intron | 50.0% |
| TGTGTGGTCTCTTGACAGCA+AGG | + | chr4_4:70526863-70526882 | None:intergenic | 50.0% | |
| GATTATAAGCCCCCGATGGT+AGG | + | chr4_4:70527225-70527244 | None:intergenic | 50.0% | |
| ACACGGACAAAATCGATGGG+AGG | - | chr4_4:70527391-70527410 | Msa0699760:intron | 50.0% | |
| ACAGAGTCATAGGCTTGGCA+GGG | + | chr4_4:70527423-70527442 | None:intergenic | 50.0% | |
| TACAGAGTCATAGGCTTGGC+AGG | + | chr4_4:70527424-70527443 | None:intergenic | 50.0% | |
| CGCATACAGAGTCATAGGCT+TGG | + | chr4_4:70527428-70527447 | None:intergenic | 50.0% | |
| GCATCAGATTGGGCTACCAA+TGG | - | chr4_4:70527460-70527479 | Msa0699760:intron | 50.0% | |
| TCAGATTGGGCTACCAATGG+GGG | - | chr4_4:70527463-70527482 | Msa0699760:intron | 50.0% | |
| TTCTCCGACCTTGTCCTACA+TGG | - | chr4_4:70527529-70527548 | Msa0699760:intron | 50.0% | |
| CTGCACAACCATGTAGGACA+AGG | + | chr4_4:70527540-70527559 | None:intergenic | 50.0% | |
| GATCGACTGCACAACCATGT+AGG | + | chr4_4:70527546-70527565 | None:intergenic | 50.0% | |
| CACTTGGCTACATGCTCGAT+TGG | + | chr4_4:70527568-70527587 | None:intergenic | 50.0% | |
| TTGATCACGCACTCTGATGG+AGG | + | chr4_4:70527721-70527740 | None:intergenic | 50.0% | |
| GGATTGATCACGCACTCTGA+TGG | + | chr4_4:70527724-70527743 | None:intergenic | 50.0% | |
| ! | GATTCGGTTCGATTACCACC+TGG | - | chr4_4:70527894-70527913 | Msa0699760:CDS | 50.0% |
| !!! | ATGGTTCCTTTTGGTGGTGG+GGG | - | chr4_4:70528003-70528022 | Msa0699760:exon | 50.0% |
| !! | AGCGATAGAGAGGTGCTAGC+TGG | + | chr4_4:70525349-70525368 | None:intergenic | 55.0% |
| ACACCGGCAGTGTAATCAGC+AGG | + | chr4_4:70525869-70525888 | None:intergenic | 55.0% | |
| GGCAATGGTAGCACCAGCAT+TGG | - | chr4_4:70526460-70526479 | Msa0699760:intron | 55.0% | |
| !! | TAGCACCAGCATTGGCAGAG+AGG | - | chr4_4:70526468-70526487 | Msa0699760:intron | 55.0% |
| AAGCCCCCGATGGTAGGATA+TGG | + | chr4_4:70527219-70527238 | None:intergenic | 55.0% | |
| AAACGACACCACCACAGCAG+AGG | - | chr4_4:70527811-70527830 | Msa0699760:intron | 55.0% | |
| !!! | TGGTTCCTTTTGGTGGTGGG+GGG | - | chr4_4:70528004-70528023 | Msa0699760:exon | 55.0% |
| GACCCTGTCACATTCGGCAG+CGG | - | chr4_4:70527772-70527791 | Msa0699760:intron | 60.0% | |
| TGCCGCTGCCGAATGTGACA+GGG | + | chr4_4:70527777-70527796 | None:intergenic | 60.0% | |
| CGTGGTTTCCTCTGCTGTGG+TGG | + | chr4_4:70527822-70527841 | None:intergenic | 60.0% | |
| CTGCGTGGTTTCCTCTGCTG+TGG | + | chr4_4:70527825-70527844 | None:intergenic | 60.0% | |
| !!! | GGTTCCTTTTGGTGGTGGGG+GGG | - | chr4_4:70528005-70528024 | Msa0699760:exon | 60.0% |
| !!! | GTTCCTTTTGGTGGTGGGGG+GGG | - | chr4_4:70528006-70528025 | Msa0699760:exon | 60.0% |
| ATACCCCCCCCACCACCAAA+AGG | + | chr4_4:70528012-70528031 | None:intergenic | 60.0% | |
| CTGCCGCTGCCGAATGTGAC+AGG | + | chr4_4:70527778-70527797 | None:intergenic | 65.0% | |
| GGCAGCGGCAGACATCGTCA+TGG | - | chr4_4:70527787-70527806 | Msa0699760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 70525288 | 70528237 | 70525288 | ID=Msa0699760;Name=Msa0699760 |
| chr4_4 | mRNA | 70525288 | 70528237 | 70525288 | ID=Msa0699760-mRNA-1;Parent=Msa0699760;Name=Msa0699760-mRNA-1;_AED=0.02;_eAED=0.02;_QI=229|1|1|1|1|1|4|376|332 |
| chr4_4 | exon | 70525288 | 70526168 | 70525288 | ID=Msa0699760-mRNA-1:exon:21351;Parent=Msa0699760-mRNA-1 |
| chr4_4 | exon | 70526959 | 70527167 | 70526959 | ID=Msa0699760-mRNA-1:exon:21350;Parent=Msa0699760-mRNA-1 |
| chr4_4 | exon | 70527621 | 70527721 | 70527621 | ID=Msa0699760-mRNA-1:exon:21349;Parent=Msa0699760-mRNA-1 |
| chr4_4 | exon | 70527825 | 70528237 | 70527825 | ID=Msa0699760-mRNA-1:exon:21348;Parent=Msa0699760-mRNA-1 |
| chr4_4 | five_prime_UTR | 70528009 | 70528237 | 70528009 | ID=Msa0699760-mRNA-1:five_prime_utr;Parent=Msa0699760-mRNA-1 |
| chr4_4 | CDS | 70527825 | 70528008 | 70527825 | ID=Msa0699760-mRNA-1:cds;Parent=Msa0699760-mRNA-1 |
| chr4_4 | CDS | 70527621 | 70527721 | 70527621 | ID=Msa0699760-mRNA-1:cds;Parent=Msa0699760-mRNA-1 |
| chr4_4 | CDS | 70526959 | 70527167 | 70526959 | ID=Msa0699760-mRNA-1:cds;Parent=Msa0699760-mRNA-1 |
| chr4_4 | CDS | 70525664 | 70526168 | 70525664 | ID=Msa0699760-mRNA-1:cds;Parent=Msa0699760-mRNA-1 |
| chr4_4 | three_prime_UTR | 70525288 | 70525663 | 70525288 | ID=Msa0699760-mRNA-1:three_prime_utr;Parent=Msa0699760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
