Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656230 | XP_013446505.1 | 96.316 | 190 | 7 | 0 | 1 | 190 | 1 | 190 | 4.28e-132 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656230 | sp|Q6NQD9|MD19B_ARATH | 52.991 | 117 | 52 | 2 | 1 | 115 | 1 | 116 | 9.93e-35 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656230 | A0A072TSY4 | 96.316 | 190 | 7 | 0 | 1 | 190 | 1 | 190 | 2.05e-132 | 378 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0656230 | Msa1206310 | 0.805707 | 1.172015e-49 | -8.615850e-47 |
| Msa0656230 | Msa1206360 | 0.801233 | 9.919712e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656230 | MtrunA17_Chr8g0376831 | 96.316 | 190 | 7 | 0 | 1 | 190 | 1 | 190 | 3.94e-136 | 378 |
| Msa0656230 | MtrunA17_Chr8g0347511 | 56.140 | 114 | 49 | 1 | 1 | 113 | 1 | 114 | 7.85e-43 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656230 | AT5G19480.3 | 52.991 | 117 | 52 | 2 | 1 | 115 | 1 | 116 | 1.01e-35 | 124 |
| Msa0656230 | AT5G19480.2 | 52.991 | 117 | 52 | 2 | 1 | 115 | 1 | 116 | 1.01e-35 | 124 |
| Msa0656230 | AT5G19480.1 | 52.991 | 117 | 52 | 2 | 1 | 115 | 1 | 116 | 1.01e-35 | 124 |
| Msa0656230 | AT5G19480.4 | 52.991 | 117 | 52 | 2 | 1 | 115 | 1 | 116 | 1.01e-35 | 124 |
| Msa0656230 | AT5G12230.1 | 49.593 | 123 | 60 | 2 | 1 | 122 | 1 | 122 | 1.27e-33 | 119 |
Find 37 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTTGGTAGCCCCTTCT+TGG | 0.192829 | 4_3:+65496787 | None:intergenic |
| TCCTTTCATTCTCTCTAGAT+TGG | 0.283756 | 4_3:+65496747 | None:intergenic |
| CTAGATTGGTTTGCCGAGTT+TGG | 0.294881 | 4_3:+65496761 | None:intergenic |
| CTTACACAAGAAAGGTGATT+TGG | 0.296388 | 4_3:+65496924 | None:intergenic |
| GAGAATAGAATGTTAGGTTT+TGG | 0.320532 | 4_3:+65499560 | None:intergenic |
| AAGAGCAAACCTTGTCTTGT+TGG | 0.327280 | 4_3:+65496609 | None:intergenic |
| GAAGGGAGAAGGGGTGGAAC+TGG | 0.369006 | 4_3:-65497048 | Msa0656230:CDS |
| GCCGAGTTTGGCACTGCATT+TGG | 0.378393 | 4_3:+65496773 | None:intergenic |
| GAAAGAGAGAATAGAATGTT+AGG | 0.383158 | 4_3:+65499554 | None:intergenic |
| CTTAATACATTCAAGTCAAA+AGG | 0.425621 | 4_3:+65496975 | None:intergenic |
| AGCTTTCCGTCTAAGAGAAA+TGG | 0.454513 | 4_3:-65496949 | Msa0656230:CDS |
| AGAAGAGAAGAGCGTGGTGG+TGG | 0.467865 | 4_3:+65499525 | None:intergenic |
| ATGTTCTATGCAGGCCAAGA+AGG | 0.482623 | 4_3:-65496801 | Msa0656230:intron |
| TTGGATCCATTTCTCTTAGA+CGG | 0.482761 | 4_3:+65496943 | None:intergenic |
| TGTTGGTTTGTCAACGGCGA+AGG | 0.482817 | 4_3:+65496626 | None:intergenic |
| TCGTAAGTCAATATAAGCTT+TGG | 0.492221 | 4_3:-65497163 | Msa0656230:CDS |
| TGTTCTATGCAGGCCAAGAA+GGG | 0.512387 | 4_3:-65496800 | Msa0656230:intron |
| TTTCTTTCTTTCAGAAAAGG+AGG | 0.524487 | 4_3:-65496459 | Msa0656230:intron |
| ACCAAATGCAGTGCCAAACT+CGG | 0.524803 | 4_3:-65496774 | Msa0656230:CDS |
| GAAGCAGGCACTAGAGAACT+TGG | 0.529673 | 4_3:-65497200 | Msa0656230:intron |
| TTTGATCGCTTGCAAACAGA+AGG | 0.532599 | 4_3:+65496418 | None:intergenic |
| CACTATCTTCGCAATGTGGT+TGG | 0.538774 | 4_3:-65497086 | Msa0656230:CDS |
| TTGTCTTGTTGGTTTGTCAA+CGG | 0.539426 | 4_3:+65496620 | None:intergenic |
| TTCTTTCTTTCAGAAAAGGA+GGG | 0.543872 | 4_3:-65496458 | Msa0656230:intron |
| ACCAATCTAGAGAGAATGAA+AGG | 0.560310 | 4_3:-65496748 | Msa0656230:CDS |
| ATCTTGAAGATGGATCTTGA+AGG | 0.587712 | 4_3:-65499451 | Msa0656230:exon |
| ACTATGAATTCTTCTGCAAG+AGG | 0.591142 | 4_3:-65497136 | Msa0656230:CDS |
| TTGCAGAAGAATTCATAGTA+CGG | 0.598762 | 4_3:+65497140 | None:intergenic |
| AATCAAGAAGGGAGAAGGGG+TGG | 0.615870 | 4_3:-65497054 | Msa0656230:CDS |
| AAGTCAAAAGGAGATAAGCA+AGG | 0.623892 | 4_3:+65496987 | None:intergenic |
| TGTGTCTCTGAAATCGACAA+TGG | 0.641607 | 4_3:+65497107 | None:intergenic |
| GCAGGCACTAGAGAACTTGG+TGG | 0.644607 | 4_3:-65497197 | Msa0656230:intron |
| GTTCTATGCAGGCCAAGAAG+GGG | 0.647685 | 4_3:-65496799 | Msa0656230:intron |
| GTTGACAAACCAACAAGACA+AGG | 0.663074 | 4_3:-65496618 | Msa0656230:intron |
| GACACACTATCTTCGCAATG+TGG | 0.676741 | 4_3:-65497090 | Msa0656230:CDS |
| ACAGAGAGAAGAGAAGAGCG+TGG | 0.677679 | 4_3:+65499519 | None:intergenic |
| GAGAGAAGAGAAGAGCGTGG+TGG | 0.697239 | 4_3:+65499522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATACATTATTTAAAA+CGG | + | chr4_3:65498167-65498186 | None:intergenic | 10.0% |
| !!! | ATAATTTGTTATAGATGTTT+TGG | - | chr4_3:65496544-65496563 | Msa0656230:intron | 15.0% |
| !!! | ACATCAAAAAAAATATTTTG+CGG | - | chr4_3:65497042-65497061 | Msa0656230:CDS | 15.0% |
| !!! | ATATTTCTTTTTTTATTCTG+CGG | - | chr4_3:65497082-65497101 | Msa0656230:CDS | 15.0% |
| !!! | TGTAGAAAAAAACTTTTAAA+TGG | - | chr4_3:65497772-65497791 | Msa0656230:intron | 15.0% |
| !!! | ATCGTTTTTGTTTTTGTTTT+TGG | - | chr4_3:65496456-65496475 | Msa0656230:intron | 20.0% |
| !!! | TCGTTTTTGTTTTTGTTTTT+GGG | - | chr4_3:65496457-65496476 | Msa0656230:intron | 20.0% |
| !! | AAACTTAAATATTGTGGTAA+TGG | - | chr4_3:65496578-65496597 | Msa0656230:intron | 20.0% |
| !! | TAAAGAGACAATATATACAT+AGG | + | chr4_3:65496864-65496883 | None:intergenic | 20.0% |
| !!! | TATTTGATTTGATAAACTAG+CGG | - | chr4_3:65497681-65497700 | Msa0656230:intron | 20.0% |
| !!! | TTTCTTTTCTTATGTGTATT+TGG | - | chr4_3:65497716-65497735 | Msa0656230:intron | 20.0% |
| !!! | CTTTAAAATTTTATTTGGAG+TGG | + | chr4_3:65498201-65498220 | None:intergenic | 20.0% |
| !! | TTGCAGAATATATATCTTAA+TGG | + | chr4_3:65498273-65498292 | None:intergenic | 20.0% |
| !! | TTAAGATATATATTCTGCAA+TGG | - | chr4_3:65498273-65498292 | Msa0656230:intron | 20.0% |
| !! | TAAGATATATATTCTGCAAT+GGG | - | chr4_3:65498274-65498293 | Msa0656230:intron | 20.0% |
| !!! | TGTATAGAGAACTTTTAATA+AGG | - | chr4_3:65498608-65498627 | Msa0656230:intron | 20.0% |
| !!! | CTTTTAATAAGGTTATTTCT+TGG | - | chr4_3:65498619-65498638 | Msa0656230:intron | 20.0% |
| !! | TTAAAAATCTTACACAAGAA+AGG | + | chr4_3:65498928-65498947 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTTCTTTCAGAAA+AGG | - | chr4_3:65499379-65499398 | Msa0656230:intron | 20.0% |
| !!! | GTTCTTTTTTGTTTTGTTTT+TGG | - | chr4_3:65499477-65499496 | Msa0656230:five_prime_UTR | 20.0% |
| !!! | CTTTAAAAATGAACAAAGAA+CGG | - | chr4_3:65499564-65499583 | Msa0656230:five_prime_UTR | 20.0% |
| ! | TCTTCAAGATTTGAAAAATG+AGG | + | chr4_3:65496380-65496399 | None:intergenic | 25.0% |
| !!! | CATTTTTCAAATCTTGAAGA+TGG | - | chr4_3:65496380-65496399 | Msa0656230:three_prime_UTR | 25.0% |
| !!! | GTTTTATTGGTTCACTATTT+TGG | - | chr4_3:65496510-65496529 | Msa0656230:intron | 25.0% |
| !!! | TAGATGTTTTGGTTAAAGTA+AGG | - | chr4_3:65496555-65496574 | Msa0656230:intron | 25.0% |
| ! | GTAAGGAAACTTAAATATTG+TGG | - | chr4_3:65496572-65496591 | Msa0656230:intron | 25.0% |
| ! | CAAAAATAACTCAATCCAAA+CGG | + | chr4_3:65496662-65496681 | None:intergenic | 25.0% |
| !! | GCATATGAAGATACAATTTT+TGG | - | chr4_3:65496750-65496769 | Msa0656230:CDS | 25.0% |
| !!! | TTTTTGAGCTTATGAAAAGT+AGG | + | chr4_3:65496822-65496841 | None:intergenic | 25.0% |
| !! | CTATGTAGTTTAGAATTGAA+GGG | - | chr4_3:65496914-65496933 | Msa0656230:intron | 25.0% |
| ! | ATTGAATGAACCTTAAAAGT+GGG | + | chr4_3:65496998-65497017 | None:intergenic | 25.0% |
| ! | TATTGAATGAACCTTAAAAG+TGG | + | chr4_3:65496999-65497018 | None:intergenic | 25.0% |
| !! | CATTTTCAGACATATTTTCA+GGG | - | chr4_3:65497224-65497243 | Msa0656230:intron | 25.0% |
| ! | TAAATCCAATCATATAACCT+TGG | + | chr4_3:65497260-65497279 | None:intergenic | 25.0% |
| ! | CATTCTTGAAAACAAAACTT+AGG | - | chr4_3:65497320-65497339 | Msa0656230:intron | 25.0% |
| !! | AATTTTGTGAGGTTTAAACT+CGG | - | chr4_3:65497465-65497484 | Msa0656230:intron | 25.0% |
| ! | ATATAGCAAATAGAGCTTAA+GGG | - | chr4_3:65497490-65497509 | Msa0656230:intron | 25.0% |
| ! | TGATTACTTCACAATCATAA+AGG | + | chr4_3:65497517-65497536 | None:intergenic | 25.0% |
| ! | TTTATGCTCTCTTTATATGT+AGG | - | chr4_3:65497638-65497657 | Msa0656230:intron | 25.0% |
| ! | ATACACATAAGAAAAGAAAG+AGG | + | chr4_3:65497715-65497734 | None:intergenic | 25.0% |
| ! | CAAAGAATAAACTATACTAC+TGG | + | chr4_3:65497749-65497768 | None:intergenic | 25.0% |
| !! | AAACTTTTAAATGGTTCAGT+TGG | - | chr4_3:65497781-65497800 | Msa0656230:intron | 25.0% |
| ! | AATGAATTACTTCCAAGTTA+AGG | + | chr4_3:65497861-65497880 | None:intergenic | 25.0% |
| ! | TTGTGGTAATATACATTGAT+TGG | - | chr4_3:65497881-65497900 | Msa0656230:intron | 25.0% |
| ! | TAGGTAGTTTAGAAAATTGA+AGG | - | chr4_3:65498021-65498040 | Msa0656230:intron | 25.0% |
| ! | AGGTAGTTTAGAAAATTGAA+GGG | - | chr4_3:65498022-65498041 | Msa0656230:intron | 25.0% |
| ! | AATGAAGTCTTGATTTAGTT+TGG | - | chr4_3:65498069-65498088 | Msa0656230:intron | 25.0% |
| ! | AAATACAATATTAACAGGGT+CGG | + | chr4_3:65498249-65498268 | None:intergenic | 25.0% |
| ! | TGGCAAATACAATATTAACA+GGG | + | chr4_3:65498253-65498272 | None:intergenic | 25.0% |
| ! | ATGGCAAATACAATATTAAC+AGG | + | chr4_3:65498254-65498273 | None:intergenic | 25.0% |
| !!! | AGGTTTTTTCTCATTCATTT+TGG | + | chr4_3:65498837-65498856 | None:intergenic | 25.0% |
| ! | CTTAATACATTCAAGTCAAA+AGG | + | chr4_3:65498869-65498888 | None:intergenic | 25.0% |
| ! | AAGCTACTACGAATTAAAAA+TGG | - | chr4_3:65499149-65499168 | Msa0656230:intron | 25.0% |
| ! | ATAGACATTAAAAAGTCATG+TGG | - | chr4_3:65499312-65499331 | Msa0656230:intron | 25.0% |
| ! | AAAAAATAGAGTTTAGTGTC+GGG | + | chr4_3:65499523-65499542 | None:intergenic | 25.0% |
| ! | CAAAAAATAGAGTTTAGTGT+CGG | + | chr4_3:65499524-65499543 | None:intergenic | 25.0% |
| ! | GAGAATAGAATGTTAGGTTT+TGG | + | chr4_3:65496284-65496303 | None:intergenic | 30.0% |
| GAAAGAGAGAATAGAATGTT+AGG | + | chr4_3:65496290-65496309 | None:intergenic | 30.0% | |
| ATCTTGAAGGCAAAAACTTT+GGG | - | chr4_3:65496403-65496422 | Msa0656230:exon | 30.0% | |
| !!! | ACCTACCATTGTTGTTTTAT+TGG | - | chr4_3:65496497-65496516 | Msa0656230:intron | 30.0% |
| ACCAATAAAACAACAATGGT+AGG | + | chr4_3:65496501-65496520 | None:intergenic | 30.0% | |
| GTGAACCAATAAAACAACAA+TGG | + | chr4_3:65496505-65496524 | None:intergenic | 30.0% | |
| TCTTTACATTGCATGTGAAA+CGG | - | chr4_3:65496626-65496645 | Msa0656230:CDS | 30.0% | |
| GTCTCTTTAGTAATATCATG+TGG | - | chr4_3:65496875-65496894 | Msa0656230:intron | 30.0% | |
| GTAATATCATGTGGAAGATA+TGG | - | chr4_3:65496884-65496903 | Msa0656230:intron | 30.0% | |
| ! | GCTATGTAGTTTAGAATTGA+AGG | - | chr4_3:65496913-65496932 | Msa0656230:intron | 30.0% |
| !! | ATGATGTAAACCCACTTTTA+AGG | - | chr4_3:65496985-65497004 | Msa0656230:CDS | 30.0% |
| CCTGAAAATATGTCTGAAAA+TGG | + | chr4_3:65497226-65497245 | None:intergenic | 30.0% | |
| ! | CCATTTTCAGACATATTTTC+AGG | - | chr4_3:65497223-65497242 | Msa0656230:intron | 30.0% |
| !! | CAAGAATGTGTTGATTTAGT+AGG | + | chr4_3:65497308-65497327 | None:intergenic | 30.0% |
| TGAAAACAAAACTTAGGAGT+TGG | - | chr4_3:65497326-65497345 | Msa0656230:intron | 30.0% | |
| ACAAAATTCTATGAACGTGA+GGG | + | chr4_3:65497453-65497472 | None:intergenic | 30.0% | |
| GATATAGCAAATAGAGCTTA+AGG | - | chr4_3:65497489-65497508 | Msa0656230:intron | 30.0% | |
| TCAAATCAAATATACAACCG+AGG | + | chr4_3:65497673-65497692 | None:intergenic | 30.0% | |
| ! | CTTGGAAGTAATTCATTTTG+TGG | - | chr4_3:65497864-65497883 | Msa0656230:intron | 30.0% |
| GTGATATCATGTAGAAGATA+TGG | - | chr4_3:65497990-65498009 | Msa0656230:intron | 30.0% | |
| CATGTAGAAGATATGGTTAT+AGG | - | chr4_3:65497997-65498016 | Msa0656230:intron | 30.0% | |
| GTTTAGAAAATTGAAGGGAT+CGG | - | chr4_3:65498027-65498046 | Msa0656230:intron | 30.0% | |
| TTTAGAAAATTGAAGGGATC+GGG | - | chr4_3:65498028-65498047 | Msa0656230:intron | 30.0% | |
| ! | TCGGCATTTGTTAAATATCT+AGG | + | chr4_3:65498230-65498249 | None:intergenic | 30.0% |
| AGCTATACAGGTTATGTTAT+GGG | + | chr4_3:65498308-65498327 | None:intergenic | 30.0% | |
| TAGCTATACAGGTTATGTTA+TGG | + | chr4_3:65498309-65498328 | None:intergenic | 30.0% | |
| ACATAACCTGTATAGCTAAA+TGG | - | chr4_3:65498311-65498330 | Msa0656230:intron | 30.0% | |
| AATCAGCAAGCATAATAACA+GGG | + | chr4_3:65498501-65498520 | None:intergenic | 30.0% | |
| TAATCAGCAAGCATAATAAC+AGG | + | chr4_3:65498502-65498521 | None:intergenic | 30.0% | |
| !! | GTCTAAATCGTTTTTCCAAT+AGG | + | chr4_3:65498528-65498547 | None:intergenic | 30.0% |
| TCGTAAGTCAATATAAGCTT+TGG | - | chr4_3:65498678-65498697 | Msa0656230:intron | 30.0% | |
| TTGCAGAAGAATTCATAGTA+CGG | + | chr4_3:65498704-65498723 | None:intergenic | 30.0% | |
| ! | GATTTTTAAACTTCACTGTC+TGG | - | chr4_3:65498939-65498958 | Msa0656230:intron | 30.0% |
| TTTCTTTCTTTCAGAAAAGG+AGG | - | chr4_3:65499382-65499401 | Msa0656230:intron | 30.0% | |
| TTCTTTCTTTCAGAAAAGGA+GGG | - | chr4_3:65499383-65499402 | Msa0656230:intron | 30.0% | |
| ATCTTGAAGATGGATCTTGA+AGG | - | chr4_3:65496390-65496409 | Msa0656230:exon | 35.0% | |
| GATCTTGAAGGCAAAAACTT+TGG | - | chr4_3:65496402-65496421 | Msa0656230:exon | 35.0% | |
| !! | ATTGTGGTAATGGCATTGAT+TGG | - | chr4_3:65496588-65496607 | Msa0656230:intron | 35.0% |
| CTTTACATTGCATGTGAAAC+GGG | - | chr4_3:65496627-65496646 | Msa0656230:CDS | 35.0% | |
| TACATAGGACTCGTTTAGAT+TGG | + | chr4_3:65496849-65496868 | None:intergenic | 35.0% | |
| ! | TGTAGTTTAGAATTGAAGGG+TGG | - | chr4_3:65496917-65496936 | Msa0656230:intron | 35.0% |
| CTAATGATTGGGATGATGTT+AGG | + | chr4_3:65497196-65497215 | None:intergenic | 35.0% | |
| !!! | CATATTTTCAGGGTCTTGTT+TGG | - | chr4_3:65497234-65497253 | Msa0656230:intron | 35.0% |
| TTTGGCCAAGGTTATATGAT+TGG | - | chr4_3:65497252-65497271 | Msa0656230:intron | 35.0% | |
| CACAAAATTCTATGAACGTG+AGG | + | chr4_3:65497454-65497473 | None:intergenic | 35.0% | |
| ! | CACGTTCATAGAATTTTGTG+AGG | - | chr4_3:65497454-65497473 | Msa0656230:intron | 35.0% |
| TATGTAGGTCTACTTATCCT+CGG | - | chr4_3:65497653-65497672 | Msa0656230:intron | 35.0% | |
| ATTACTTCCAAGTTAAGGCA+TGG | + | chr4_3:65497856-65497875 | None:intergenic | 35.0% | |
| AGAAGATATGGTTATAGGCT+AGG | - | chr4_3:65498002-65498021 | Msa0656230:intron | 35.0% | |
| !! | AAGTCTTGATTTAGTTTGGC+AGG | - | chr4_3:65498073-65498092 | Msa0656230:intron | 35.0% |
| !! | AGTCTTGATTTAGTTTGGCA+GGG | - | chr4_3:65498074-65498093 | Msa0656230:intron | 35.0% |
| TTTATATCCATACAAGCCAC+AGG | - | chr4_3:65498102-65498121 | Msa0656230:intron | 35.0% | |
| AACCTGTATAGCTAAATGGT+TGG | - | chr4_3:65498315-65498334 | Msa0656230:intron | 35.0% | |
| GTAAACCATTTAACTACGGT+GGG | + | chr4_3:65498357-65498376 | None:intergenic | 35.0% | |
| CCAGGTAAACCATTTAACTA+CGG | + | chr4_3:65498361-65498380 | None:intergenic | 35.0% | |
| TCAAACTGAGCATCTAAAAG+TGG | + | chr4_3:65498436-65498455 | None:intergenic | 35.0% | |
| ! | GCTTGCTGATTAATTCCTAT+TGG | - | chr4_3:65498510-65498529 | Msa0656230:intron | 35.0% |
| !! | TAAGGTTATTTCTTGGAAGC+AGG | - | chr4_3:65498626-65498645 | Msa0656230:intron | 35.0% |
| ACTATGAATTCTTCTGCAAG+AGG | - | chr4_3:65498705-65498724 | Msa0656230:intron | 35.0% | |
| TGGTGACACAAAAATCAAGA+AGG | - | chr4_3:65498775-65498794 | Msa0656230:intron | 35.0% | |
| GGTGACACAAAAATCAAGAA+GGG | - | chr4_3:65498776-65498795 | Msa0656230:intron | 35.0% | |
| ACAAAAATCAAGAAGGGAGA+AGG | - | chr4_3:65498782-65498801 | Msa0656230:intron | 35.0% | |
| CAAAAATCAAGAAGGGAGAA+GGG | - | chr4_3:65498783-65498802 | Msa0656230:intron | 35.0% | |
| AAAAATCAAGAAGGGAGAAG+GGG | - | chr4_3:65498784-65498803 | Msa0656230:intron | 35.0% | |
| AAGTCAAAAGGAGATAAGCA+AGG | + | chr4_3:65498857-65498876 | None:intergenic | 35.0% | |
| TTGGATCCATTTCTCTTAGA+CGG | + | chr4_3:65498901-65498920 | None:intergenic | 35.0% | |
| CTTACACAAGAAAGGTGATT+TGG | + | chr4_3:65498920-65498939 | None:intergenic | 35.0% | |
| ! | ATTTTGTCCTCATGTTTTGC+TGG | - | chr4_3:65498998-65499017 | Msa0656230:intron | 35.0% |
| CATTATACCAGCAAAACATG+AGG | + | chr4_3:65499008-65499027 | None:intergenic | 35.0% | |
| ACCAATCTAGAGAGAATGAA+AGG | - | chr4_3:65499093-65499112 | Msa0656230:intron | 35.0% | |
| TCCTTTCATTCTCTCTAGAT+TGG | + | chr4_3:65499097-65499116 | None:intergenic | 35.0% | |
| !! | TTGTCTTGTTGGTTTGTCAA+CGG | + | chr4_3:65499224-65499243 | None:intergenic | 35.0% |
| TTGAAGGCAAAAACTTTGGG+AGG | - | chr4_3:65496406-65496425 | Msa0656230:CDS | 40.0% | |
| ! | TGAAGGCAAAAACTTTGGGA+GGG | - | chr4_3:65496407-65496426 | Msa0656230:CDS | 40.0% |
| TTGCATGTGAAACGGGATTA+AGG | - | chr4_3:65496634-65496653 | Msa0656230:CDS | 40.0% | |
| TGCATGTGAAACGGGATTAA+GGG | - | chr4_3:65496635-65496654 | Msa0656230:CDS | 40.0% | |
| ATGGAGCAGAGCTAATGATT+GGG | + | chr4_3:65497207-65497226 | None:intergenic | 40.0% | |
| AATGGAGCAGAGCTAATGAT+TGG | + | chr4_3:65497208-65497227 | None:intergenic | 40.0% | |
| TGTAAGAGCAAGTCTTCAAC+AGG | + | chr4_3:65497551-65497570 | None:intergenic | 40.0% | |
| ACAGTTTCCATGCCTTAACT+TGG | - | chr4_3:65497846-65497865 | Msa0656230:intron | 40.0% | |
| CGTTACGGTTAGGAAAAAAG+AGG | + | chr4_3:65497936-65497955 | None:intergenic | 40.0% | |
| !!! | CTTTTTTCCTAACCGTAACG+CGG | - | chr4_3:65497936-65497955 | Msa0656230:intron | 40.0% |
| !!! | TTTTTTCCTAACCGTAACGC+GGG | - | chr4_3:65497937-65497956 | Msa0656230:intron | 40.0% |
| ! | ACAGGTTATGTTATGGGCTA+TGG | + | chr4_3:65498302-65498321 | None:intergenic | 40.0% |
| GGTAAACCATTTAACTACGG+TGG | + | chr4_3:65498358-65498377 | None:intergenic | 40.0% | |
| CCGTAGTTAAATGGTTTACC+TGG | - | chr4_3:65498358-65498377 | Msa0656230:intron | 40.0% | |
| ATGAATGTGAGATCTGAACC+AGG | + | chr4_3:65498379-65498398 | None:intergenic | 40.0% | |
| !! | TGTGTCTCTGAAATCGACAA+TGG | + | chr4_3:65498737-65498756 | None:intergenic | 40.0% |
| AGCTTTCCGTCTAAGAGAAA+TGG | - | chr4_3:65498892-65498911 | Msa0656230:intron | 40.0% | |
| TTGGCCTGCATAGAACATAT+CGG | + | chr4_3:65499038-65499057 | None:intergenic | 40.0% | |
| GTTGACAAACCAACAAGACA+AGG | - | chr4_3:65499223-65499242 | Msa0656230:intron | 40.0% | |
| AAGAGCAAACCTTGTCTTGT+TGG | + | chr4_3:65499235-65499254 | None:intergenic | 40.0% | |
| CAGTGCATAACAATGGATGA+AGG | + | chr4_3:65499263-65499282 | None:intergenic | 40.0% | |
| TGACACACAGTGCATAACAA+TGG | + | chr4_3:65499270-65499289 | None:intergenic | 40.0% | |
| TCTCTCCTCAATGTAAGACA+CGG | + | chr4_3:65499293-65499312 | None:intergenic | 40.0% | |
| TTTGATCGCTTGCAAACAGA+AGG | + | chr4_3:65499426-65499445 | None:intergenic | 40.0% | |
| ! | GAAGGCAAAAACTTTGGGAG+GGG | - | chr4_3:65496408-65496427 | Msa0656230:CDS | 45.0% |
| AGGGGTAAGAACTTGACATG+TGG | - | chr4_3:65496426-65496445 | Msa0656230:CDS | 45.0% | |
| TAGAATTGAAGGGTGGCAAC+TGG | - | chr4_3:65496924-65496943 | Msa0656230:intron | 45.0% | |
| CCTAACGTCGAAAGAAAGGT+GGG | + | chr4_3:65497591-65497610 | None:intergenic | 45.0% | |
| TCCTAACGTCGAAAGAAAGG+TGG | + | chr4_3:65497592-65497611 | None:intergenic | 45.0% | |
| GACTCCTAACGTCGAAAGAA+AGG | + | chr4_3:65497595-65497614 | None:intergenic | 45.0% | |
| CATAATTCCATCCCGCGTTA+CGG | + | chr4_3:65497951-65497970 | None:intergenic | 45.0% | |
| ! | CCTATAACCTGTGGCTTGTA+TGG | + | chr4_3:65498112-65498131 | None:intergenic | 45.0% |
| CCATACAAGCCACAGGTTAT+AGG | - | chr4_3:65498109-65498128 | Msa0656230:intron | 45.0% | |
| GGCCAACCATTTAGCTATAC+AGG | + | chr4_3:65498320-65498339 | None:intergenic | 45.0% | |
| ! | GTATAGCTAAATGGTTGGCC+TGG | - | chr4_3:65498320-65498339 | Msa0656230:intron | 45.0% |
| AAGTGGCTCAATACTCTCAG+AGG | + | chr4_3:65498419-65498438 | None:intergenic | 45.0% | |
| GACACACTATCTTCGCAATG+TGG | - | chr4_3:65498751-65498770 | Msa0656230:intron | 45.0% | |
| CACTATCTTCGCAATGTGGT+TGG | - | chr4_3:65498755-65498774 | Msa0656230:intron | 45.0% | |
| CACACCGATATGTTCTATGC+AGG | - | chr4_3:65499031-65499050 | Msa0656230:intron | 45.0% | |
| ATGTTCTATGCAGGCCAAGA+AGG | - | chr4_3:65499040-65499059 | Msa0656230:intron | 45.0% | |
| TGTTCTATGCAGGCCAAGAA+GGG | - | chr4_3:65499041-65499060 | Msa0656230:intron | 45.0% | |
| ACCAAATGCAGTGCCAAACT+CGG | - | chr4_3:65499067-65499086 | Msa0656230:intron | 45.0% | |
| !! | CTAGATTGGTTTGCCGAGTT+TGG | + | chr4_3:65499083-65499102 | None:intergenic | 45.0% |
| TGTCACCGTGTCTTACATTG+AGG | - | chr4_3:65499285-65499304 | Msa0656230:intron | 45.0% | |
| !!! | TATTTCTTTAAAATTTTATT+TGG | + | chr4_3:65498206-65498225 | None:intergenic | 5.0% |
| ACAGAGAGAAGAGAAGAGCG+TGG | + | chr4_3:65496325-65496344 | None:intergenic | 50.0% | |
| AACGGGATTAAGGGTCCGTT+TGG | - | chr4_3:65496644-65496663 | Msa0656230:CDS | 50.0% | |
| !! | TTCAGGGTCTTGTTTGGCCA+AGG | - | chr4_3:65497240-65497259 | Msa0656230:intron | 50.0% |
| CCCACCTTTCTTTCGACGTT+AGG | - | chr4_3:65497588-65497607 | Msa0656230:intron | 50.0% | |
| CAAGCCACAGGTTATAGGCA+TGG | - | chr4_3:65498114-65498133 | Msa0656230:intron | 50.0% | |
| GCTTCCATGCCTATAACCTG+TGG | + | chr4_3:65498121-65498140 | None:intergenic | 50.0% | |
| !! | AATGGTTGGCCTGGTTCATG+AGG | - | chr4_3:65498329-65498348 | Msa0656230:intron | 50.0% |
| AGGCTCCCACCGTAGTTAAA+TGG | - | chr4_3:65498349-65498368 | Msa0656230:intron | 50.0% | |
| GAAGCAGGCACTAGAGAACT+TGG | - | chr4_3:65498641-65498660 | Msa0656230:intron | 50.0% | |
| AATCAAGAAGGGAGAAGGGG+TGG | - | chr4_3:65498787-65498806 | Msa0656230:intron | 50.0% | |
| GTTCTATGCAGGCCAAGAAG+GGG | - | chr4_3:65499042-65499061 | Msa0656230:intron | 50.0% | |
| ! | TGCATTTGGTAGCCCCTTCT+TGG | + | chr4_3:65499057-65499076 | None:intergenic | 50.0% |
| !! | TGTTGGTTTGTCAACGGCGA+AGG | + | chr4_3:65499218-65499237 | None:intergenic | 50.0% |
| ! | AGAAGAGAAGAGCGTGGTGG+TGG | + | chr4_3:65496319-65496338 | None:intergenic | 55.0% |
| ! | GAGAGAAGAGAAGAGCGTGG+TGG | + | chr4_3:65496322-65496341 | None:intergenic | 55.0% |
| TTGAAGGGTGGCAACTGGCA+AGG | - | chr4_3:65496929-65496948 | Msa0656230:CDS | 55.0% | |
| TGAAGGGTGGCAACTGGCAA+GGG | - | chr4_3:65496930-65496949 | Msa0656230:CDS | 55.0% | |
| TTCCTAACCGTAACGCGGGA+TGG | - | chr4_3:65497941-65497960 | Msa0656230:intron | 55.0% | |
| TTCCATCCCGCGTTACGGTT+AGG | + | chr4_3:65497946-65497965 | None:intergenic | 55.0% | |
| GCAGGCACTAGAGAACTTGG+TGG | - | chr4_3:65498644-65498663 | Msa0656230:intron | 55.0% | |
| GCCGAGTTTGGCACTGCATT+TGG | + | chr4_3:65499071-65499090 | None:intergenic | 55.0% | |
| GAAGGGAGAAGGGGTGGAAC+TGG | - | chr4_3:65498793-65498812 | Msa0656230:intron | 60.0% | |
| AGGGTGGCAACTGGCAAGGG+AGG | - | chr4_3:65496933-65496952 | Msa0656230:CDS | 65.0% | |
| GGGTGGCAACTGGCAAGGGA+GGG | - | chr4_3:65496934-65496953 | Msa0656230:CDS | 65.0% | |
| CGGTGGGAGCCTCATGAACC+AGG | + | chr4_3:65498341-65498360 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65496269 | 65499594 | 65496269 | ID=Msa0656230;Name=Msa0656230 |
| chr4_3 | mRNA | 65496269 | 65499594 | 65496269 | ID=Msa0656230-mRNA-1;Parent=Msa0656230;Name=Msa0656230-mRNA-1;_AED=0.06;_eAED=0.06;_QI=130|1|1|1|1|1|4|136|190 |
| chr4_3 | exon | 65496269 | 65496467 | 65496269 | ID=Msa0656230-mRNA-1:exon:18594;Parent=Msa0656230-mRNA-1 |
| chr4_3 | exon | 65496619 | 65496810 | 65496619 | ID=Msa0656230-mRNA-1:exon:18593;Parent=Msa0656230-mRNA-1 |
| chr4_3 | exon | 65496929 | 65497215 | 65496929 | ID=Msa0656230-mRNA-1:exon:18592;Parent=Msa0656230-mRNA-1 |
| chr4_3 | exon | 65499434 | 65499594 | 65499434 | ID=Msa0656230-mRNA-1:exon:18591;Parent=Msa0656230-mRNA-1 |
| chr4_3 | five_prime_UTR | 65499465 | 65499594 | 65499465 | ID=Msa0656230-mRNA-1:five_prime_utr;Parent=Msa0656230-mRNA-1 |
| chr4_3 | CDS | 65499434 | 65499464 | 65499434 | ID=Msa0656230-mRNA-1:cds;Parent=Msa0656230-mRNA-1 |
| chr4_3 | CDS | 65496929 | 65497215 | 65496929 | ID=Msa0656230-mRNA-1:cds;Parent=Msa0656230-mRNA-1 |
| chr4_3 | CDS | 65496619 | 65496810 | 65496619 | ID=Msa0656230-mRNA-1:cds;Parent=Msa0656230-mRNA-1 |
| chr4_3 | CDS | 65496405 | 65496467 | 65496405 | ID=Msa0656230-mRNA-1:cds;Parent=Msa0656230-mRNA-1 |
| chr4_3 | three_prime_UTR | 65496269 | 65496404 | 65496269 | ID=Msa0656230-mRNA-1:three_prime_utr;Parent=Msa0656230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
