AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206310 MtrunA17_Chr4g0055421 100.000 213 0 0 1 213 1 213 6.58e-155 427
Msa1206310 MtrunA17_Chr5g0446931 63.333 210 77 0 1 210 16 225 1.35e-94 275
Msa1206310 MtrunA17_Chr3g0102821 62.857 210 78 0 1 210 16 225 7.02e-94 273
Msa1206310 MtrunA17_Chr4g0076551 61.611 211 80 1 1 210 16 226 9.34e-94 273
Msa1206310 MtrunA17_Chr8g0388331 54.286 210 96 0 1 210 1 210 6.70e-86 253
Msa1206310 MtrunA17_Chr1g0151621 60.000 210 79 1 2 206 36 245 3.95e-84 249
Msa1206310 MtrunA17_Chr8g0346911 56.923 195 84 0 16 210 39 233 1.74e-79 237
Msa1206310 MtrunA17_Chr2g0290771 58.919 185 76 0 26 210 6 190 2.29e-77 230
Msa1206310 MtrunA17_Chr2g0290781 54.922 193 87 0 21 213 41 233 8.32e-71 215
Msa1206310 MtrunA17_Chr2g0290751 54.255 188 84 1 5 192 25 210 1.51e-68 209
Msa1206310 MtrunA17_Chr2g0290761 52.083 192 90 1 3 192 19 210 2.66e-67 206
Msa1206310 MtrunA17_Chr8g0341941 48.165 218 104 1 2 210 38 255 1.80e-66 205
Msa1206310 MtrunA17_Chr4g0063121 54.696 181 62 1 30 210 7 167 7.58e-61 189
Msa1206310 MtrunA17_Chr5g0399921 68.696 115 35 1 1 115 1 114 1.79e-51 162
Msa1206310 MtrunA17_Chr3g0126811 66.957 115 37 1 1 114 1 115 6.04e-50 158
Msa1206310 MtrunA17_Chr3g0126801 59.596 99 40 0 112 210 6 104 9.45e-39 130
Msa1206310 MtrunA17_Chr8g0388321 47.826 138 44 3 1 129 46 164 1.25e-33 118
Msa1206310 MtrunA17_Chr5g0399931 64.935 77 26 1 132 208 1 76 3.24e-26 96.7
Msa1206310 MtrunA17_Chr8g0388311 49.367 79 40 0 132 210 1 79 9.17e-22 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206310 AT4G17615.4 79.812 213 43 0 1 213 1 213 1.18e-123 348
Msa1206310 AT4G17615.1 79.812 213 43 0 1 213 1 213 1.18e-123 348
Msa1206310 AT4G17615.5 79.812 213 43 0 1 213 1 213 1.18e-123 348
Msa1206310 AT5G47100.1 78.873 213 45 0 1 213 1 213 1.89e-121 343
Msa1206310 AT4G17615.3 78.894 199 42 0 1 199 1 199 2.00e-112 322
Msa1206310 AT5G24270.4 60.465 215 81 1 1 211 1 215 3.13e-92 270
Msa1206310 AT5G24270.1 60.465 215 81 1 1 211 1 215 3.13e-92 270
Msa1206310 AT5G24270.2 60.465 215 81 1 1 211 1 215 3.13e-92 270
Msa1206310 AT5G55990.1 61.905 210 80 0 1 210 16 225 4.00e-92 269
Msa1206310 AT5G55990.2 61.905 210 80 0 1 210 16 225 4.00e-92 269
Msa1206310 AT4G26570.1 61.538 208 80 0 3 210 18 225 5.43e-92 269
Msa1206310 AT4G17615.2 80.000 160 32 0 54 213 12 171 2.07e-90 263
Msa1206310 AT4G26570.2 60.377 212 80 1 3 210 18 229 7.47e-90 264
Msa1206310 AT5G47100.2 79.114 158 33 0 1 158 1 158 2.00e-88 258
Msa1206310 AT5G24270.5 62.032 187 71 0 25 211 4 190 2.40e-83 246
Msa1206310 AT4G33000.2 53.589 209 96 1 3 210 38 246 9.35e-80 239
Msa1206310 AT1G64480.2 52.885 208 98 0 3 210 7 214 1.00e-79 238
Msa1206310 AT1G64480.3 52.885 208 98 0 3 210 7 214 1.00e-79 238
Msa1206310 AT1G64480.1 52.885 208 98 0 3 210 7 214 1.00e-79 238
Msa1206310 AT4G33000.1 53.589 209 96 1 3 210 48 256 1.70e-79 238
Msa1206310 AT4G16350.2 53.365 208 90 2 1 208 17 217 1.30e-73 222
Msa1206310 AT4G16350.1 53.365 208 90 2 1 208 17 217 1.30e-73 222
Msa1206310 AT1G64480.4 53.403 191 89 0 3 193 7 197 8.10e-73 219
Msa1206310 AT5G24270.3 59.259 162 66 0 50 211 7 168 3.66e-68 207
Msa1206310 AT4G01420.1 49.268 205 99 2 1 203 1 202 8.51e-63 194
Msa1206310 AT4G01420.2 49.231 195 94 2 1 193 1 192 3.40e-59 184
Msa1206310 AT4G26560.1 47.120 191 88 2 33 210 23 213 8.91e-58 182
Msa1206310 AT4G33000.4 50.968 155 75 1 3 156 38 192 9.52e-53 168
Msa1206310 AT4G33000.6 50.968 155 75 1 3 156 38 192 9.52e-53 168
Msa1206310 AT4G33000.5 51.299 154 74 1 3 155 38 191 1.25e-52 169
Msa1206310 AT4G33000.3 46.087 115 61 1 3 116 38 152 4.60e-31 111

Find 51 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCACCAACCAACCATAAA+TGG 0.149138 8_1:-63270001 Msa1206310:exon
GAGTTGAAACAGCCCATTTA+TGG 0.177439 8_1:+63269988 None:intergenic
TATTGAGAGTACACAACTTT+AGG 0.272421 8_1:-63267046 Msa1206310:three_prime_UTR
TCTCAAATTATTAAGAGAAT+TGG 0.282078 8_1:-63267022 Msa1206310:three_prime_UTR
CTCTATGATTTGCACAATAC+TGG 0.282366 8_1:-63267855 Msa1206310:CDS
TTCCCAGGATACTGTCTTGT+TGG 0.314753 8_1:+63269961 None:intergenic
TTGAGAGCAAACACAGCTTT+AGG 0.337250 8_1:-63267078 Msa1206310:exon
AGGTAGAGAATAGGTGTAAA+GGG 0.349515 8_1:+63270731 None:intergenic
TGTCTTCTAGCGCTGCGTTT+GGG 0.352671 8_1:+63267995 None:intergenic
TTGTCTTCTAGCGCTGCGTT+TGG 0.360612 8_1:+63267994 None:intergenic
AAGAAAATATCTTTGCAAAT+CGG 0.363808 8_1:-63268393 Msa1206310:CDS
AGCAGTTCTGTTGTTGATGA+TGG 0.399714 8_1:-63268724 Msa1206310:CDS
AGAAAATATCTTTGCAAATC+GGG 0.419742 8_1:-63268392 Msa1206310:intron
GAGGTAGAGAATAGGTGTAA+AGG 0.422683 8_1:+63270730 None:intergenic
TTTGCAGGAAGAATTTCAAT+TGG 0.442118 8_1:-63268437 Msa1206310:intron
AATTATTAAGAGAATTGGAT+TGG 0.448012 8_1:-63267017 Msa1206310:three_prime_UTR
CTCACCAACCAACCATAAAT+GGG 0.459973 8_1:-63270000 Msa1206310:exon
TGTTTCTACTCGCTGCTACC+TGG 0.462034 8_1:-63270701 Msa1206310:intron
AAATTACAGCTCACTGAGAA+AGG 0.463323 8_1:+63266934 None:intergenic
TTAGAATTAAATACAAAACT+TGG 0.466958 8_1:+63267119 None:intergenic
TACAAGGAAAAGACATAACT+TGG 0.474603 8_1:+63266873 None:intergenic
CGAGTCTGAAATGAAGTTGG+CGG 0.474982 8_1:-63267587 Msa1206310:CDS
GAAGAGAATATCGAGATTCA+CGG 0.481923 8_1:+63270823 None:intergenic
TAAATCAGGTAAACCTGCAC+TGG 0.495318 8_1:-63270044 Msa1206310:intron
CGTGATTCTTGCATCACAAA+CGG 0.498006 8_1:-63269929 Msa1206310:CDS
TTTCGAGTCTGAAATGAAGT+TGG 0.499107 8_1:-63267590 Msa1206310:CDS
TTGATCTATTTGATGTCAAG+AGG 0.532385 8_1:-63268068 Msa1206310:CDS
CTTAAATATAATAACAAGCA+TGG 0.544078 8_1:+63266957 None:intergenic
AAGCCAACAAGACAGTATCC+TGG 0.544762 8_1:-63269964 Msa1206310:CDS
TAGAATTAAATACAAAACTT+GGG 0.546002 8_1:+63267120 None:intergenic
ATCACGGGATCCTCTTTCCC+AGG 0.546051 8_1:+63269946 None:intergenic
AGCCAACAAGACAGTATCCT+GGG 0.547133 8_1:-63269963 Msa1206310:CDS
AAGACAGTATCCTGGGAAAG+AGG 0.548655 8_1:-63269956 Msa1206310:CDS
TCTATTTGATGTCAAGAGGA+AGG 0.556268 8_1:-63268064 Msa1206310:CDS
TGAAACAGCCCATTTATGGT+TGG 0.556522 8_1:+63269992 None:intergenic
TCATGACACTTCCCTACCTA+AGG 0.559648 8_1:-63267266 Msa1206310:intron
GATGCTGACTTGAACCAAGA+TGG 0.561233 8_1:-63267348 Msa1206310:CDS
GTTTGTGATGCAAGAATCAC+GGG 0.563182 8_1:+63269931 None:intergenic
CTTCTAGCGCTGCGTTTGGG+TGG 0.565868 8_1:+63267998 None:intergenic
CGTTTGTGATGCAAGAATCA+CGG 0.569128 8_1:+63269930 None:intergenic
GCAGTTCTGTTGTTGATGAT+GGG 0.573252 8_1:-63268723 Msa1206310:CDS
ACAGCCCATTTATGGTTGGT+TGG 0.591382 8_1:+63269996 None:intergenic
TCCAGCACATACCTTAGGTA+GGG 0.591653 8_1:+63267255 None:intergenic
CTATTTGATGTCAAGAGGAA+GGG 0.597733 8_1:-63268063 Msa1206310:CDS
GCACGGTACAGAACCAGTGC+AGG 0.604665 8_1:+63270031 None:intergenic
TATGGTTGGTTGGTGAGCAA+AGG 0.609477 8_1:+63270006 None:intergenic
GTCCAGCACATACCTTAGGT+AGG 0.611062 8_1:+63267254 None:intergenic
GTTGGTGAGCAAAGGATGCA+CGG 0.621598 8_1:+63270014 None:intergenic
TGATGATGGGCTAATAAGCA+AGG 0.637084 8_1:-63268710 Msa1206310:intron
GATAGAAACAATTCTAGACA+AGG 0.686128 8_1:-63267557 Msa1206310:intron
TGGCTTTATAGAGCGTCCAG+AGG 0.712213 8_1:-63267835 Msa1206310:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAAAAAAAAAAAA+GGG + chr8_1:63267115-63267134 None:intergenic 0.0%
!! AATATATATAAAAAAAAAAA+AGG + chr8_1:63267116-63267135 None:intergenic 0.0%
!!! ATTGATTTTTTAAAACAATT+TGG + chr8_1:63267296-63267315 None:intergenic 10.0%
!! TTTCATTATATAATATGTTA+TGG - chr8_1:63267550-63267569 Msa1206310:intron 10.0%
!! ATATAATAATGATAAAACTA+AGG - chr8_1:63267922-63267941 Msa1206310:intron 10.0%
!! CTTTAAATATTAAAAATACA+AGG + chr8_1:63270812-63270831 None:intergenic 10.0%
!! GAAATGTAATAACTTAATAA+GGG - chr8_1:63268319-63268338 Msa1206310:intron 15.0%
!! AAAATTATATCAATGAAAAG+AGG + chr8_1:63269985-63270004 None:intergenic 15.0%
!! ATTTCATATCTAATATTCTA+TGG + chr8_1:63270198-63270217 None:intergenic 15.0%
!! TAGAATTAAATACAAAACTT+GGG + chr8_1:63270549-63270568 None:intergenic 15.0%
!! TTAGAATTAAATACAAAACT+TGG + chr8_1:63270550-63270569 None:intergenic 15.0%
!! ATAAAGAGAAAAAAGAAGAA+AGG + chr8_1:63266902-63266921 None:intergenic 20.0%
!! AACTAAAAAAAAAGAAGGAA+TGG + chr8_1:63267025-63267044 None:intergenic 20.0%
!! AGAACAACTAAAAAAAAAGA+AGG + chr8_1:63267030-63267049 None:intergenic 20.0%
!!! TTTCGATCTTATTTTTACTA+GGG - chr8_1:63267049-63267068 Msa1206310:three_prime_UTR 20.0%
!! AGAGAAAATTAAAATAATGC+CGG + chr8_1:63267426-63267445 None:intergenic 20.0%
!! TGATTTGATATAATCTTGTA+TGG - chr8_1:63267480-63267499 Msa1206310:intron 20.0%
!! TCTCATGATATATTTAAATC+AGG - chr8_1:63267608-63267627 Msa1206310:CDS 20.0%
!!! ATGTTTTCATATAGTAAACA+AGG + chr8_1:63267948-63267967 None:intergenic 20.0%
!!! TATGAAAACATTTTCAGTTT+TGG - chr8_1:63267957-63267976 Msa1206310:intron 20.0%
!!! TTGTTTTAAAACTGTTAACA+AGG - chr8_1:63267997-63268016 Msa1206310:CDS 20.0%
!! AAAGAAGTTGTAAAAGAAAA+TGG - chr8_1:63268143-63268162 Msa1206310:intron 20.0%
!! GGAAATGTAATAACTTAATA+AGG - chr8_1:63268318-63268337 Msa1206310:intron 20.0%
!! AAAAAAACAACCATGATATT+CGG + chr8_1:63268476-63268495 None:intergenic 20.0%
!!! TAAAGAATATAATTGATAGC+AGG + chr8_1:63268544-63268563 None:intergenic 20.0%
!! AATAAGCTGAAAATAATCAA+TGG - chr8_1:63269024-63269043 Msa1206310:intron 20.0%
!!! TTTGTGCATTTTTTTCATTT+TGG - chr8_1:63269149-63269168 Msa1206310:intron 20.0%
!! AAGAAAATATCTTTGCAAAT+CGG - chr8_1:63269273-63269292 Msa1206310:intron 20.0%
!! AAATAAATAAGAAAGTTGCA+AGG + chr8_1:63269476-63269495 None:intergenic 20.0%
!!! CAACTTTCTTATTTATTTCT+TGG - chr8_1:63269478-63269497 Msa1206310:intron 20.0%
!!! AAAAAGTTATTTCACAAGAA+TGG + chr8_1:63269525-63269544 None:intergenic 20.0%
!!! AAATAACTTTTTCAATTGAC+TGG - chr8_1:63269533-63269552 Msa1206310:intron 20.0%
!! AATAAAAACATAACATTCAG+TGG + chr8_1:63269912-63269931 None:intergenic 20.0%
!! AAAAAAGCAATGTCTAATTA+AGG + chr8_1:63270281-63270300 None:intergenic 20.0%
!! TGAACATCATAATCATAATA+TGG + chr8_1:63270470-63270489 None:intergenic 20.0%
!!! TTTTGTATTTAATTCTAACG+TGG - chr8_1:63270552-63270571 Msa1206310:intron 20.0%
!! TCTCAAATTATTAAGAGAAT+TGG - chr8_1:63270644-63270663 Msa1206310:intron 20.0%
!! AATTATTAAGAGAATTGGAT+TGG - chr8_1:63270649-63270668 Msa1206310:intron 20.0%
!! CTTAAATATAATAACAAGCA+TGG + chr8_1:63270712-63270731 None:intergenic 20.0%
! AAAAAAAGAAGGAATGGAAA+TGG + chr8_1:63267019-63267038 None:intergenic 25.0%
!!! CTTTCGATCTTATTTTTACT+AGG - chr8_1:63267048-63267067 Msa1206310:three_prime_UTR 25.0%
! ATTCTATTGTGCAATTTGAT+TGG - chr8_1:63267133-63267152 Msa1206310:CDS 25.0%
! TTCTATTGTGCAATTTGATT+GGG - chr8_1:63267134-63267153 Msa1206310:CDS 25.0%
! TGATTGTTTCATCTTCATAA+AGG - chr8_1:63267178-63267197 Msa1206310:intron 25.0%
! GATTGTTTCATCTTCATAAA+GGG - chr8_1:63267179-63267198 Msa1206310:intron 25.0%
! GTCAGAAATGAATAATTGAT+CGG + chr8_1:63267378-63267397 None:intergenic 25.0%
! TATGTTATGGTGTTTCAATT+TGG - chr8_1:63267563-63267582 Msa1206310:CDS 25.0%
! ATGTTATGGTGTTTCAATTT+GGG - chr8_1:63267564-63267583 Msa1206310:CDS 25.0%
!! TTTGAGTTTATATGCTTATG+AGG - chr8_1:63267840-63267859 Msa1206310:CDS 25.0%
!! CATTTTCAGAAACAATGTTT+TGG - chr8_1:63268085-63268104 Msa1206310:intron 25.0%
! AAATGAAAAACATGAAGCAT+TGG - chr8_1:63268216-63268235 Msa1206310:intron 25.0%
!!! TTTGGTTTTTTGTTAGAAGT+AGG - chr8_1:63268288-63268307 Msa1206310:intron 25.0%
! TCATATGATATATCTCAACA+TGG - chr8_1:63268354-63268373 Msa1206310:intron 25.0%
! CATATGATATATCTCAACAT+GGG - chr8_1:63268355-63268374 Msa1206310:intron 25.0%
!! AATGGAAAATAATTGATAGC+AGG + chr8_1:63268588-63268607 None:intergenic 25.0%
!! CTATCAATTATTTTCCATTG+TGG - chr8_1:63268589-63268608 Msa1206310:intron 25.0%
! TGAAACCAAAATTTGATACA+CGG + chr8_1:63268874-63268893 None:intergenic 25.0%
! AAAATGTTATCTGGATTAAG+AGG + chr8_1:63269131-63269150 None:intergenic 25.0%
! AAATGCACAAAAATGTTATC+TGG + chr8_1:63269140-63269159 None:intergenic 25.0%
! AGAAAATATCTTTGCAAATC+GGG - chr8_1:63269274-63269293 Msa1206310:intron 25.0%
! ATTTCTATCTTCAAAGAAAC+CGG + chr8_1:63269439-63269458 None:intergenic 25.0%
! TTAAGGTAAACAACAATAAG+TGG + chr8_1:63269725-63269744 None:intergenic 25.0%
! TGTCCTGATATATTATGTTT+GGG - chr8_1:63269765-63269784 Msa1206310:intron 25.0%
! AATCCCAAACATAATATATC+AGG + chr8_1:63269771-63269790 None:intergenic 25.0%
!!! AATTAGACATTGCTTTTTTC+TGG - chr8_1:63270282-63270301 Msa1206310:intron 25.0%
!!! TTATTTTTGTCATTGATGCA+GGG - chr8_1:63270507-63270526 Msa1206310:intron 25.0%
GGTTGAAAAATCTTAACTCA+AGG - chr8_1:63267200-63267219 Msa1206310:intron 30.0%
AATTATTCATTTCTGACACG+CGG - chr8_1:63267381-63267400 Msa1206310:intron 30.0%
ATTCGTTTCTTTCAGTGAAA+TGG - chr8_1:63267771-63267790 Msa1206310:intron 30.0%
TTCAGTGAAATGGTAGTTAT+TGG - chr8_1:63267781-63267800 Msa1206310:intron 30.0%
AATGGTAGTTATTGGATTGT+AGG - chr8_1:63267789-63267808 Msa1206310:intron 30.0%
AATGTAAATTCACACTAAGC+AGG + chr8_1:63267867-63267886 None:intergenic 30.0%
GCTTAGTGTGAATTTACATT+TGG - chr8_1:63267867-63267886 Msa1206310:CDS 30.0%
TAAAACTGTTAACAAGGAGA+TGG - chr8_1:63268003-63268022 Msa1206310:CDS 30.0%
TAGTAACAATTGTGATACAG+AGG - chr8_1:63268036-63268055 Msa1206310:CDS 30.0%
AGTTGTAAAAGAAAATGGTG+AGG - chr8_1:63268148-63268167 Msa1206310:intron 30.0%
GAAAATGGTGAGGAATATAT+TGG - chr8_1:63268158-63268177 Msa1206310:intron 30.0%
!! ATGAAGCATTGGAGATAAAT+GGG - chr8_1:63268227-63268246 Msa1206310:intron 30.0%
! TTTTTGTTAGAAGTAGGCAA+AGG - chr8_1:63268294-63268313 Msa1206310:intron 30.0%
TTACGCACATTTACAAAACA+CGG + chr8_1:63268405-63268424 None:intergenic 30.0%
GTAAACTAAACCGAATATCA+TGG - chr8_1:63268463-63268482 Msa1206310:intron 30.0%
GAAACAAAAATGAGACTTGT+TGG - chr8_1:63268685-63268704 Msa1206310:intron 30.0%
!! ACTTGTTGGTTCATTTGTTT+CGG - chr8_1:63268699-63268718 Msa1206310:intron 30.0%
AAAATGTTTCCATCTTGTGA+TGG - chr8_1:63268790-63268809 Msa1206310:intron 30.0%
ATAACAAATCCATCACAAGA+TGG + chr8_1:63268802-63268821 None:intergenic 30.0%
!! ATCTTGTGATGGATTTGTTA+TGG - chr8_1:63268801-63268820 Msa1206310:intron 30.0%
! TAAACCCGTGTATCAAATTT+TGG - chr8_1:63268866-63268885 Msa1206310:intron 30.0%
GAAACCAAAATTTGATACAC+GGG + chr8_1:63268873-63268892 None:intergenic 30.0%
AACTCTGCATAAGAAATTGT+AGG - chr8_1:63268990-63269009 Msa1206310:intron 30.0%
ACTCTGCATAAGAAATTGTA+GGG - chr8_1:63268991-63269010 Msa1206310:intron 30.0%
TTTGCAGGAAGAATTTCAAT+TGG - chr8_1:63269229-63269248 Msa1206310:intron 30.0%
TTGCAGAGAACAAAAATTGA+TGG + chr8_1:63269341-63269360 None:intergenic 30.0%
ACTATGAAGTTGACAAATAC+TGG + chr8_1:63269385-63269404 None:intergenic 30.0%
ACTTCATAGTTTATACACCT+AGG - chr8_1:63269395-63269414 Msa1206310:intron 30.0%
AGATGAGAAAAATAAAGCCT+AGG + chr8_1:63269415-63269434 None:intergenic 30.0%
TTTCTATCTTCAAAGAAACC+GGG + chr8_1:63269438-63269457 None:intergenic 30.0%
AATTTCTGACATCGTATCAA+TGG + chr8_1:63269563-63269582 None:intergenic 30.0%
TTGATCTATTTGATGTCAAG+AGG - chr8_1:63269598-63269617 Msa1206310:intron 30.0%
AGATCAAAGTGAGGAATTTA+AGG + chr8_1:63269742-63269761 None:intergenic 30.0%
GTGTCCTGATATATTATGTT+TGG - chr8_1:63269764-63269783 Msa1206310:intron 30.0%
!!! AAACGTGTCATTTTCATTGA+GGG + chr8_1:63269883-63269902 None:intergenic 30.0%
!! TTGCTTTTCTTTCCCTTATT+TGG - chr8_1:63270014-63270033 Msa1206310:five_prime_UTR 30.0%
GATAGAAACAATTCTAGACA+AGG - chr8_1:63270109-63270128 Msa1206310:intron 30.0%
!! CAATGTCTATTTTTCCATCT+TGG + chr8_1:63270335-63270354 None:intergenic 30.0%
GAAAAATAGACATTGTTGAG+TGG - chr8_1:63270340-63270359 Msa1206310:intron 30.0%
!!! GTTATTTTTGTCATTGATGC+AGG - chr8_1:63270506-63270525 Msa1206310:intron 30.0%
! TATTGAGAGTACACAACTTT+AGG - chr8_1:63270620-63270639 Msa1206310:intron 30.0%
!! CTCATTGAAATTTTTCAGTC+AGG - chr8_1:63270767-63270786 Msa1206310:five_prime_UTR 30.0%
TACAAGGAAAAGACATAACT+TGG + chr8_1:63270796-63270815 None:intergenic 30.0%
GAAGAGAATATCGAGATTCA+CGG + chr8_1:63266846-63266865 None:intergenic 35.0%
AGGTAGAGAATAGGTGTAAA+GGG + chr8_1:63266938-63266957 None:intergenic 35.0%
CAAAAAGTGAGGTAGAGAAT+AGG + chr8_1:63266947-63266966 None:intergenic 35.0%
ATTGATCGGTATGACAACAT+GGG + chr8_1:63267364-63267383 None:intergenic 35.0%
AATTGATCGGTATGACAACA+TGG + chr8_1:63267365-63267384 None:intergenic 35.0%
! ATGGTGTTTCAATTTGGGTT+TGG - chr8_1:63267569-63267588 Msa1206310:CDS 35.0%
! GTTTCAATTTGGGTTTGGAT+TGG - chr8_1:63267574-63267593 Msa1206310:CDS 35.0%
CAATTGTGATACAGAGGATA+TGG - chr8_1:63268042-63268061 Msa1206310:CDS 35.0%
!! CATGAAGCATTGGAGATAAA+TGG - chr8_1:63268226-63268245 Msa1206310:intron 35.0%
TGCAAACTGGCAATAACTTA+CGG + chr8_1:63268253-63268272 None:intergenic 35.0%
GAGATATATCATATGACAGC+AGG + chr8_1:63268350-63268369 None:intergenic 35.0%
! TGCTTTTCTTCTACTCATTG+CGG - chr8_1:63268438-63268457 Msa1206310:intron 35.0%
! GAAAGAAAGCAACCTTTTCT+GGG + chr8_1:63268625-63268644 None:intergenic 35.0%
! TGAAAGAAAGCAACCTTTTC+TGG + chr8_1:63268626-63268645 None:intergenic 35.0%
GTGGTTCAATTGAAATTGCT+GGG - chr8_1:63268721-63268740 Msa1206310:CDS 35.0%
GCATTTGGAAGAGCTTATTT+CGG + chr8_1:63269109-63269128 None:intergenic 35.0%
!! TATCTGGATTAAGAGGCATT+TGG + chr8_1:63269124-63269143 None:intergenic 35.0%
TTTAGCCTGTAATGTGATCA+TGG - chr8_1:63269196-63269215 Msa1206310:intron 35.0%
TTAGCCTGTAATGTGATCAT+GGG - chr8_1:63269197-63269216 Msa1206310:intron 35.0%
AATACCCATGATCACATTAC+AGG + chr8_1:63269204-63269223 None:intergenic 35.0%
!!! GCTTTATTTTTCTCATCTCC+CGG - chr8_1:63269417-63269436 Msa1206310:intron 35.0%
TCTATTTGATGTCAAGAGGA+AGG - chr8_1:63269602-63269621 Msa1206310:intron 35.0%
CTATTTGATGTCAAGAGGAA+GGG - chr8_1:63269603-63269622 Msa1206310:intron 35.0%
AGGTAAACAACAATAAGTGG+AGG + chr8_1:63269722-63269741 None:intergenic 35.0%
! ATTTTCCTGCAGTCTCATTT+AGG - chr8_1:63269788-63269807 Msa1206310:intron 35.0%
! CTCTATGATTTGCACAATAC+TGG - chr8_1:63269811-63269830 Msa1206310:intron 35.0%
!!! CAAACGTGTCATTTTCATTG+AGG + chr8_1:63269884-63269903 None:intergenic 35.0%
!! CAGAACAAAAGTGTTCACTT+AGG + chr8_1:63269935-63269954 None:intergenic 35.0%
! CTAAGTGAACACTTTTGTTC+TGG - chr8_1:63269933-63269952 Msa1206310:CDS 35.0%
TGTCAGACATCACCAAATAA+GGG + chr8_1:63270029-63270048 None:intergenic 35.0%
! TTTCGAGTCTGAAATGAAGT+TGG - chr8_1:63270076-63270095 Msa1206310:intron 35.0%
AACAATATTTCTTCTGCAGG+TGG + chr8_1:63270227-63270246 None:intergenic 35.0%
AGCAACAATATTTCTTCTGC+AGG + chr8_1:63270230-63270249 None:intergenic 35.0%
! GTCATGATTTTGAGCAATGA+AGG + chr8_1:63270387-63270406 None:intergenic 35.0%
! TATGTGCTGGACTATTTTCA+TGG - chr8_1:63270423-63270442 Msa1206310:intron 35.0%
AAATTACAGCTCACTGAGAA+AGG + chr8_1:63270735-63270754 None:intergenic 35.0%
GAGGTAGAGAATAGGTGTAA+AGG + chr8_1:63266939-63266958 None:intergenic 40.0%
GCGAGTAGAAACAAAAAGTG+AGG + chr8_1:63266958-63266977 None:intergenic 40.0%
! TTGGGTTTGGATTGGATGAA+TGG - chr8_1:63267582-63267601 Msa1206310:CDS 40.0%
! TGGGTTTGGATTGGATGAAT+GGG - chr8_1:63267583-63267602 Msa1206310:CDS 40.0%
TAAATCAGGTAAACCTGCAC+TGG - chr8_1:63267622-63267641 Msa1206310:intron 40.0%
CTCACCAACCAACCATAAAT+GGG - chr8_1:63267666-63267685 Msa1206310:intron 40.0%
TGAAACAGCCCATTTATGGT+TGG + chr8_1:63267677-63267696 None:intergenic 40.0%
GAGTTGAAACAGCCCATTTA+TGG + chr8_1:63267681-63267700 None:intergenic 40.0%
GTTTGTGATGCAAGAATCAC+GGG + chr8_1:63267738-63267757 None:intergenic 40.0%
CGTTTGTGATGCAAGAATCA+CGG + chr8_1:63267739-63267758 None:intergenic 40.0%
CGTGATTCTTGCATCACAAA+CGG - chr8_1:63267737-63267756 Msa1206310:intron 40.0%
AACTGTTAACAAGGAGATGG+AGG - chr8_1:63268006-63268025 Msa1206310:CDS 40.0%
AAGTGAACTGTCTTGCAAAC+TGG + chr8_1:63268266-63268285 None:intergenic 40.0%
GCAAGACAGTTCACTTTGTT+TGG - chr8_1:63268270-63268289 Msa1206310:intron 40.0%
TTGTTAGAAGTAGGCAAAGG+TGG - chr8_1:63268297-63268316 Msa1206310:intron 40.0%
ATATCATATGACAGCAGGTG+AGG + chr8_1:63268345-63268364 None:intergenic 40.0%
! TCTCAACATGGGCTATATGA+AGG - chr8_1:63268366-63268385 Msa1206310:intron 40.0%
!! TGTTGGTTCATTTGTTTCGG+TGG - chr8_1:63268702-63268721 Msa1206310:intron 40.0%
GGTGGTTCAATTGAAATTGC+TGG - chr8_1:63268720-63268739 Msa1206310:CDS 40.0%
! AGCAGTTCTGTTGTTGATGA+TGG - chr8_1:63268942-63268961 Msa1206310:intron 40.0%
!! GCAGTTCTGTTGTTGATGAT+GGG - chr8_1:63268943-63268962 Msa1206310:intron 40.0%
!! TGATGATGGGCTAATAAGCA+AGG - chr8_1:63268956-63268975 Msa1206310:intron 40.0%
CATGGGTATTCTTTCTTTGC+AGG - chr8_1:63269214-63269233 Msa1206310:intron 40.0%
TTGACAAATACTGGAGCCAT+AGG + chr8_1:63269376-63269395 None:intergenic 40.0%
CTGTCAGACATCACCAAATA+AGG + chr8_1:63270030-63270049 None:intergenic 40.0%
!! CTTATTTGGTGATGTCTGAC+AGG - chr8_1:63270028-63270047 Msa1206310:five_prime_UTR 40.0%
!! TTTTTCTGGCCAGACTTTCT+TGG - chr8_1:63270296-63270315 Msa1206310:intron 40.0%
AATAGTCCAGCACATACCTT+AGG + chr8_1:63270419-63270438 None:intergenic 40.0%
TTGAGAGCAAACACAGCTTT+AGG - chr8_1:63270588-63270607 Msa1206310:intron 40.0%
TAGAGAGAGAGAAACTCACC+AGG + chr8_1:63266986-63267005 None:intergenic 45.0%
!! TATGGTTGGTTGGTGAGCAA+AGG + chr8_1:63267663-63267682 None:intergenic 45.0%
GCTCACCAACCAACCATAAA+TGG - chr8_1:63267665-63267684 Msa1206310:intron 45.0%
ACAGCCCATTTATGGTTGGT+TGG + chr8_1:63267673-63267692 None:intergenic 45.0%
AAGCCAACAAGACAGTATCC+TGG - chr8_1:63267702-63267721 Msa1206310:intron 45.0%
AGCCAACAAGACAGTATCCT+GGG - chr8_1:63267703-63267722 Msa1206310:intron 45.0%
TTCCCAGGATACTGTCTTGT+TGG + chr8_1:63267708-63267727 None:intergenic 45.0%
AAGACAGTATCCTGGGAAAG+AGG - chr8_1:63267710-63267729 Msa1206310:intron 45.0%
AGAGCTTGTGACAACAGCTT+AGG + chr8_1:63269056-63269075 None:intergenic 45.0%
AGGACACACAGATCAAAGTG+AGG + chr8_1:63269751-63269770 None:intergenic 45.0%
TAGAGCCTAAATGAGACTGC+AGG + chr8_1:63269796-63269815 None:intergenic 45.0%
AGCAATCATCATCTCACCTC+TGG + chr8_1:63269850-63269869 None:intergenic 45.0%
! CGAGTCTGAAATGAAGTTGG+CGG - chr8_1:63270079-63270098 Msa1206310:intron 45.0%
AGTCAGCATCCAAGAAAGTC+TGG + chr8_1:63270308-63270327 None:intergenic 45.0%
!! GATGCTGACTTGAACCAAGA+TGG - chr8_1:63270318-63270337 Msa1206310:intron 45.0%
TCATGACACTTCCCTACCTA+AGG - chr8_1:63270400-63270419 Msa1206310:intron 45.0%
TCCAGCACATACCTTAGGTA+GGG + chr8_1:63270414-63270433 None:intergenic 45.0%
! TGTTTCTACTCGCTGCTACC+TGG - chr8_1:63266965-63266984 Msa1206310:three_prime_UTR 50.0%
! GTTGGTGAGCAAAGGATGCA+CGG + chr8_1:63267655-63267674 None:intergenic 50.0%
GGATTGTAGGCTGTTGCGAT+TGG - chr8_1:63267802-63267821 Msa1206310:intron 50.0%
GCAAGCATGTCAACTGCCTA+TGG - chr8_1:63269357-63269376 Msa1206310:intron 50.0%
TGTCTTCTAGCGCTGCGTTT+GGG + chr8_1:63269674-63269693 None:intergenic 50.0%
TTGTCTTCTAGCGCTGCGTT+TGG + chr8_1:63269675-63269694 None:intergenic 50.0%
!! TGGCTTTATAGAGCGTCCAG+AGG - chr8_1:63269831-63269850 Msa1206310:intron 50.0%
TCCCTACCTAAGGTATGTGC+TGG - chr8_1:63270410-63270429 Msa1206310:intron 50.0%
GTCCAGCACATACCTTAGGT+AGG + chr8_1:63270415-63270434 None:intergenic 50.0%
CGTCGAAAGCTTCTGACTGC+CGG - chr8_1:63267404-63267423 Msa1206310:intron 55.0%
ATCACGGGATCCTCTTTCCC+AGG + chr8_1:63267723-63267742 None:intergenic 55.0%
!! GCAACCTTTTCTGGGTGTCG+TGG + chr8_1:63268617-63268636 None:intergenic 55.0%
GCACGGTACAGAACCAGTGC+AGG + chr8_1:63267638-63267657 None:intergenic 60.0%
!! TGGGTGTCGTGGTGCCACAA+TGG + chr8_1:63268606-63268625 None:intergenic 60.0%
GGCACCACGACACCCAGAAA+AGG - chr8_1:63268610-63268629 Msa1206310:intron 60.0%
CTTCTAGCGCTGCGTTTGGG+TGG + chr8_1:63269671-63269690 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63266829 63270859 63266829 ID=Msa1206310;Name=Msa1206310
chr8_1 mRNA 63266829 63270859 63266829 ID=Msa1206310-mRNA-1;Parent=Msa1206310;Name=Msa1206310-mRNA-1;_AED=0.12;_eAED=0.12;_QI=212|1|1|1|0.87|0.77|9|268|213
chr8_1 exon 63266829 63267160 63266829 ID=Msa1206310-mRNA-1:exon:20492;Parent=Msa1206310-mRNA-1
chr8_1 exon 63267267 63267379 63267267 ID=Msa1206310-mRNA-1:exon:20491;Parent=Msa1206310-mRNA-1
chr8_1 exon 63267558 63267638 63267558 ID=Msa1206310-mRNA-1:exon:20490;Parent=Msa1206310-mRNA-1
chr8_1 exon 63267836 63267888 63267836 ID=Msa1206310-mRNA-1:exon:20489;Parent=Msa1206310-mRNA-1
chr8_1 exon 63267986 63268094 63267986 ID=Msa1206310-mRNA-1:exon:20488;Parent=Msa1206310-mRNA-1
chr8_1 exon 63268393 63268452 63268393 ID=Msa1206310-mRNA-1:exon:20487;Parent=Msa1206310-mRNA-1
chr8_1 exon 63268711 63268793 63268711 ID=Msa1206310-mRNA-1:exon:20486;Parent=Msa1206310-mRNA-1
chr8_1 exon 63269926 63270058 63269926 ID=Msa1206310-mRNA-1:exon:20485;Parent=Msa1206310-mRNA-1
chr8_1 exon 63270702 63270859 63270702 ID=Msa1206310-mRNA-1:exon:20484;Parent=Msa1206310-mRNA-1
chr8_1 five_prime_UTR 63270702 63270859 63270702 ID=Msa1206310-mRNA-1:five_prime_utr;Parent=Msa1206310-mRNA-1
chr8_1 five_prime_UTR 63270005 63270058 63270005 ID=Msa1206310-mRNA-1:five_prime_utr;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63269926 63270004 63269926 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63268711 63268793 63268711 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63268393 63268452 63268393 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63267986 63268094 63267986 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63267836 63267888 63267836 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63267558 63267638 63267558 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63267267 63267379 63267267 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 CDS 63267097 63267160 63267097 ID=Msa1206310-mRNA-1:cds;Parent=Msa1206310-mRNA-1
chr8_1 three_prime_UTR 63266829 63267096 63266829 ID=Msa1206310-mRNA-1:three_prime_utr;Parent=Msa1206310-mRNA-1
Gene Sequence

>Msa1206310

ATGGGCTGTTTCAACTCTAAGCCAACAAGACAGTATCCTGGGAAAGAGGATCCCGTGATTCTTGCATCACAAACGGCTTTCACTGTCAGTGAAGTTGAAGCATTATTCGAGCTTTTTAAGAGCATCAGCAGTTCTGTTGTTGATGATGGGCTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAAGAAAAAAGAAAATATCTTTGCAAATCGGATCTTTGATCTATTTGATGTCAAGAGGAAGGGCGTTATTGATTTTGATGACTTCGTTAGATCTCTCAATGTCTTCCACCCAAACGCAGCGCTAGAAGACAAGATAGAATTCTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGTCCAGAGGTCAAGCAAATGTTAATTGCACTTCTTTTCGAGTCTGAAATGAAGTTGGCGGATGATGTGATAGAAACAATTCTAGACAAGACTTTCTTGGATGCTGACTTGAACCAAGATGGAAAAATAGACATTGTTGAGTGGCGAAAATTTGTTTCTGAAAATCCTTCATTGCTCAAAATCATGACACTTCCCTACCTAAGGGACATAACAACTTCTTTCCCAAGTTTTGTATTTAATTCTAACGTGGATGAAATTGTTGCTTGA

Protein sequence

>Msa1206310

MGCFNSKPTRQYPGKEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNKKKENIFANRIFDLFDVKRKGVIDFDDFVRSLNVFHPNAALEDKIEFSFRLYDLHNTGFIERPEVKQMLIALLFESEMKLADDVIETILDKTFLDADLNQDGKIDIVEWRKFVSENPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIVA*