AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206360 MtrunA17_Chr4g0055421 100.000 213 0 0 1 213 1 213 6.58e-155 427
Msa1206360 MtrunA17_Chr5g0446931 63.333 210 77 0 1 210 16 225 1.35e-94 275
Msa1206360 MtrunA17_Chr3g0102821 62.857 210 78 0 1 210 16 225 7.02e-94 273
Msa1206360 MtrunA17_Chr4g0076551 61.611 211 80 1 1 210 16 226 9.34e-94 273
Msa1206360 MtrunA17_Chr8g0388331 54.286 210 96 0 1 210 1 210 6.70e-86 253
Msa1206360 MtrunA17_Chr1g0151621 60.000 210 79 1 2 206 36 245 3.95e-84 249
Msa1206360 MtrunA17_Chr8g0346911 56.923 195 84 0 16 210 39 233 1.74e-79 237
Msa1206360 MtrunA17_Chr2g0290771 58.919 185 76 0 26 210 6 190 2.29e-77 230
Msa1206360 MtrunA17_Chr2g0290781 54.922 193 87 0 21 213 41 233 8.32e-71 215
Msa1206360 MtrunA17_Chr2g0290751 54.255 188 84 1 5 192 25 210 1.51e-68 209
Msa1206360 MtrunA17_Chr2g0290761 52.083 192 90 1 3 192 19 210 2.66e-67 206
Msa1206360 MtrunA17_Chr8g0341941 48.165 218 104 1 2 210 38 255 1.80e-66 205
Msa1206360 MtrunA17_Chr4g0063121 54.696 181 62 1 30 210 7 167 7.58e-61 189
Msa1206360 MtrunA17_Chr5g0399921 68.696 115 35 1 1 115 1 114 1.79e-51 162
Msa1206360 MtrunA17_Chr3g0126811 66.957 115 37 1 1 114 1 115 6.04e-50 158
Msa1206360 MtrunA17_Chr3g0126801 59.596 99 40 0 112 210 6 104 9.45e-39 130
Msa1206360 MtrunA17_Chr8g0388321 47.826 138 44 3 1 129 46 164 1.25e-33 118
Msa1206360 MtrunA17_Chr5g0399931 64.935 77 26 1 132 208 1 76 3.24e-26 96.7
Msa1206360 MtrunA17_Chr8g0388311 49.367 79 40 0 132 210 1 79 9.17e-22 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206360 AT4G17615.4 79.812 213 43 0 1 213 1 213 1.18e-123 348
Msa1206360 AT4G17615.1 79.812 213 43 0 1 213 1 213 1.18e-123 348
Msa1206360 AT4G17615.5 79.812 213 43 0 1 213 1 213 1.18e-123 348
Msa1206360 AT5G47100.1 78.873 213 45 0 1 213 1 213 1.89e-121 343
Msa1206360 AT4G17615.3 78.894 199 42 0 1 199 1 199 2.00e-112 322
Msa1206360 AT5G24270.4 60.465 215 81 1 1 211 1 215 3.13e-92 270
Msa1206360 AT5G24270.1 60.465 215 81 1 1 211 1 215 3.13e-92 270
Msa1206360 AT5G24270.2 60.465 215 81 1 1 211 1 215 3.13e-92 270
Msa1206360 AT5G55990.1 61.905 210 80 0 1 210 16 225 4.00e-92 269
Msa1206360 AT5G55990.2 61.905 210 80 0 1 210 16 225 4.00e-92 269
Msa1206360 AT4G26570.1 61.538 208 80 0 3 210 18 225 5.43e-92 269
Msa1206360 AT4G17615.2 80.000 160 32 0 54 213 12 171 2.07e-90 263
Msa1206360 AT4G26570.2 60.377 212 80 1 3 210 18 229 7.47e-90 264
Msa1206360 AT5G47100.2 79.114 158 33 0 1 158 1 158 2.00e-88 258
Msa1206360 AT5G24270.5 62.032 187 71 0 25 211 4 190 2.40e-83 246
Msa1206360 AT4G33000.2 53.589 209 96 1 3 210 38 246 9.35e-80 239
Msa1206360 AT1G64480.2 52.885 208 98 0 3 210 7 214 1.00e-79 238
Msa1206360 AT1G64480.3 52.885 208 98 0 3 210 7 214 1.00e-79 238
Msa1206360 AT1G64480.1 52.885 208 98 0 3 210 7 214 1.00e-79 238
Msa1206360 AT4G33000.1 53.589 209 96 1 3 210 48 256 1.70e-79 238
Msa1206360 AT4G16350.2 53.365 208 90 2 1 208 17 217 1.30e-73 222
Msa1206360 AT4G16350.1 53.365 208 90 2 1 208 17 217 1.30e-73 222
Msa1206360 AT1G64480.4 53.403 191 89 0 3 193 7 197 8.10e-73 219
Msa1206360 AT5G24270.3 59.259 162 66 0 50 211 7 168 3.66e-68 207
Msa1206360 AT4G01420.1 49.268 205 99 2 1 203 1 202 8.51e-63 194
Msa1206360 AT4G01420.2 49.231 195 94 2 1 193 1 192 3.40e-59 184
Msa1206360 AT4G26560.1 47.120 191 88 2 33 210 23 213 8.91e-58 182
Msa1206360 AT4G33000.4 50.968 155 75 1 3 156 38 192 9.52e-53 168
Msa1206360 AT4G33000.6 50.968 155 75 1 3 156 38 192 9.52e-53 168
Msa1206360 AT4G33000.5 51.299 154 74 1 3 155 38 191 1.25e-52 169
Msa1206360 AT4G33000.3 46.087 115 61 1 3 116 38 152 4.60e-31 111

Find 51 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCACCAACCAACCATAAA+TGG 0.149138 8_1:-63340183 Msa1206360:exon
GAGTTGAAACAGCCCATTTA+TGG 0.177439 8_1:+63340170 None:intergenic
TATTGAGAGTACACAACTTT+AGG 0.272421 8_1:-63337212 Msa1206360:three_prime_UTR
TCTCAAATTATTAAGAGAAT+TGG 0.282078 8_1:-63337188 Msa1206360:three_prime_UTR
CTCTATGATTTGCACAATAC+TGG 0.282366 8_1:-63338037 Msa1206360:CDS
TTCCCAGGATACTGTCTTGT+TGG 0.314753 8_1:+63340143 None:intergenic
TTGAGAGCAAACACAGCTTT+AGG 0.337250 8_1:-63337244 Msa1206360:exon
AGGTAGAGAATAGGTGTAAA+GGG 0.349515 8_1:+63340921 None:intergenic
TGTCTTCTAGCGCTGCGTTT+GGG 0.352671 8_1:+63338177 None:intergenic
TTGTCTTCTAGCGCTGCGTT+TGG 0.360612 8_1:+63338176 None:intergenic
AAGAAAATATCTTTGCAAAT+CGG 0.363808 8_1:-63338575 Msa1206360:CDS
AGCAGTTCTGTTGTTGATGA+TGG 0.399714 8_1:-63338906 Msa1206360:CDS
AGAAAATATCTTTGCAAATC+GGG 0.419742 8_1:-63338574 Msa1206360:intron
GAGGTAGAGAATAGGTGTAA+AGG 0.422683 8_1:+63340920 None:intergenic
TTTGCAGGAAGAATTTCAAT+TGG 0.442118 8_1:-63338619 Msa1206360:intron
TGTTTCTACTCGCTGCTAGC+TGG 0.446596 8_1:-63340891 Msa1206360:intron
AATTATTAAGAGAATTGGAT+TGG 0.448012 8_1:-63337183 Msa1206360:three_prime_UTR
CTCACCAACCAACCATAAAT+GGG 0.459973 8_1:-63340182 Msa1206360:exon
AAATTACAGCTCACTGAGAA+AGG 0.463323 8_1:+63337100 None:intergenic
TTAGAATTAAATACAAAACT+TGG 0.466958 8_1:+63337285 None:intergenic
TACAAGGAAAAGACATAACT+TGG 0.474603 8_1:+63337039 None:intergenic
CGAGTCTGAAATGAAGTTGG+CGG 0.474982 8_1:-63337753 Msa1206360:CDS
GAAGAGAATATCGAGATTCA+CGG 0.481923 8_1:+63341004 None:intergenic
TAAATCAGGTAAACCTGCAC+TGG 0.495318 8_1:-63340226 Msa1206360:intron
CGTGATTCTTGCATCACAAA+CGG 0.498006 8_1:-63340111 Msa1206360:CDS
TTTCGAGTCTGAAATGAAGT+TGG 0.499107 8_1:-63337756 Msa1206360:CDS
TTGATCTATTTGATGTCAAG+AGG 0.532385 8_1:-63338250 Msa1206360:CDS
CTTAAATATAATAACAAGCA+TGG 0.544078 8_1:+63337123 None:intergenic
AAGCCAACAAGACAGTATCC+TGG 0.544762 8_1:-63340146 Msa1206360:CDS
TAGAATTAAATACAAAACTT+GGG 0.546002 8_1:+63337286 None:intergenic
ATCACGGGATCCTCTTTCCC+AGG 0.546051 8_1:+63340128 None:intergenic
AGCCAACAAGACAGTATCCT+GGG 0.547133 8_1:-63340145 Msa1206360:CDS
AAGACAGTATCCTGGGAAAG+AGG 0.548655 8_1:-63340138 Msa1206360:CDS
TCTATTTGATGTCAAGAGGA+AGG 0.556268 8_1:-63338246 Msa1206360:CDS
TGAAACAGCCCATTTATGGT+TGG 0.556522 8_1:+63340174 None:intergenic
TCATGACACTTCCCTACCTA+AGG 0.559648 8_1:-63337432 Msa1206360:intron
GATGCTGACTTGAACCAAGA+TGG 0.561233 8_1:-63337514 Msa1206360:CDS
GTTTGTGATGCAAGAATCAC+GGG 0.563182 8_1:+63340113 None:intergenic
CTTCTAGCGCTGCGTTTGGG+TGG 0.565868 8_1:+63338180 None:intergenic
CGTTTGTGATGCAAGAATCA+CGG 0.569128 8_1:+63340112 None:intergenic
TCCAGGACATACCTTAGGTA+GGG 0.569895 8_1:+63337421 None:intergenic
GCAGTTCTGTTGTTGATGAT+GGG 0.573252 8_1:-63338905 Msa1206360:CDS
ACAGCCCATTTATGGTTGGT+TGG 0.591382 8_1:+63340178 None:intergenic
CTATTTGATGTCAAGAGGAA+GGG 0.597733 8_1:-63338245 Msa1206360:CDS
GCACGGTACAGAACCAGTGC+AGG 0.604665 8_1:+63340213 None:intergenic
TATGGTTGGTTGGTGAGCAA+AGG 0.609477 8_1:+63340188 None:intergenic
GTCCAGGACATACCTTAGGT+AGG 0.617633 8_1:+63337420 None:intergenic
GTTGGTGAGCAAAGGATGCA+CGG 0.621598 8_1:+63340196 None:intergenic
TGATGATGGGCTAATAAGCA+AGG 0.637084 8_1:-63338892 Msa1206360:intron
GATAGAAACAATTCTAGACA+AGG 0.686128 8_1:-63337723 Msa1206360:intron
TGGCTTTATAGAGCGTCCAG+AGG 0.712213 8_1:-63338017 Msa1206360:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAATAAAAAAAA+AGG + chr8_1:63337272-63337291 None:intergenic 0.0%
!! AAAAATAATAAAAAAAAAGG+AGG + chr8_1:63337269-63337288 None:intergenic 10.0%
!!! ATTGATTTTTTAAAACAATT+TGG + chr8_1:63337463-63337482 None:intergenic 10.0%
!! ATATAATAATGATAAAACTA+AGG - chr8_1:63338088-63338107 Msa1206360:intron 10.0%
!! CTTTAAATATTAAAAATACA+AGG + chr8_1:63340994-63341013 None:intergenic 10.0%
!! AACAACTAAAAAAAAAAAGA+AGG + chr8_1:63337185-63337204 None:intergenic 15.0%
!! AAATAATATTATATAGTAGC+AGG + chr8_1:63337421-63337440 None:intergenic 15.0%
!! TTCAAAATTGATGAAAATAT+TGG - chr8_1:63338278-63338297 Msa1206360:intron 15.0%
!! GAAATGTAATAACTTAATAA+GGG - chr8_1:63338485-63338504 Msa1206360:intron 15.0%
!! AAAATTATATCAATGAAAAG+AGG + chr8_1:63340167-63340186 None:intergenic 15.0%
!! ATTTCATATCTAATATTCTA+TGG + chr8_1:63340380-63340399 None:intergenic 15.0%
!! TAGAATTAAATACAAAACTT+GGG + chr8_1:63340731-63340750 None:intergenic 15.0%
!! TTAGAATTAAATACAAAACT+TGG + chr8_1:63340732-63340751 None:intergenic 15.0%
!! CTAAAAAAAAAAAGAAGGAA+TGG + chr8_1:63337180-63337199 None:intergenic 20.0%
!!! TTTCGATCTTATTTTTACTA+GGG - chr8_1:63337206-63337225 Msa1206360:three_prime_UTR 20.0%
!! AGAGAAAATTAAAATAATGC+CGG + chr8_1:63337593-63337612 None:intergenic 20.0%
!! TGATTTGATATAATCTTGTA+TGG - chr8_1:63337646-63337665 Msa1206360:intron 20.0%
!! TCTCATGATATATTTAAATC+AGG - chr8_1:63337774-63337793 Msa1206360:CDS 20.0%
!!! ATGTTTTCATATAGTAAACA+AGG + chr8_1:63338114-63338133 None:intergenic 20.0%
!!! TTGTTTTAAAACTGTTAACA+AGG - chr8_1:63338163-63338182 Msa1206360:intron 20.0%
!! AAAGAAGTTGTAAAAGAAAA+TGG - chr8_1:63338309-63338328 Msa1206360:intron 20.0%
!! GGAAATGTAATAACTTAATA+AGG - chr8_1:63338484-63338503 Msa1206360:intron 20.0%
!! AAAAAAACAACCATGATATT+CGG + chr8_1:63338642-63338661 None:intergenic 20.0%
!!! TAAAGAATATAATTGATAGC+AGG + chr8_1:63338710-63338729 None:intergenic 20.0%
!! AATAAGCTGAAAATAATCAA+TGG - chr8_1:63339190-63339209 Msa1206360:intron 20.0%
!!! TTTGTGCATTTTTTTCATTT+TGG - chr8_1:63339315-63339334 Msa1206360:intron 20.0%
!! AAGAAAATATCTTTGCAAAT+CGG - chr8_1:63339439-63339458 Msa1206360:intron 20.0%
!! AAATAAATAAGAAAGTTGCA+AGG + chr8_1:63339642-63339661 None:intergenic 20.0%
!!! CAACTTTCTTATTTATTTCT+TGG - chr8_1:63339644-63339663 Msa1206360:intron 20.0%
!!! AAAAAGTTATTTCACAAGAA+TGG + chr8_1:63339691-63339710 None:intergenic 20.0%
!!! AAATAACTTTTTCAATTGAC+TGG - chr8_1:63339699-63339718 Msa1206360:intron 20.0%
!! AATAAAAACATAACATTCAG+TGG + chr8_1:63340078-63340097 None:intergenic 20.0%
!! TGAACATCATAATCATAATA+TGG + chr8_1:63340652-63340671 None:intergenic 20.0%
!!! TTTTGTATTTAATTCTAACG+TGG - chr8_1:63340734-63340753 Msa1206360:intron 20.0%
!! TCTCAAATTATTAAGAGAAT+TGG - chr8_1:63340826-63340845 Msa1206360:intron 20.0%
!! AATTATTAAGAGAATTGGAT+TGG - chr8_1:63340831-63340850 Msa1206360:intron 20.0%
!! CTTAAATATAATAACAAGCA+TGG + chr8_1:63340894-63340913 None:intergenic 20.0%
!! AGAGAAAAAAGAAGTGTAAT+GGG + chr8_1:63337058-63337077 None:intergenic 25.0%
!! AAGAGAAAAAAGAAGTGTAA+TGG + chr8_1:63337059-63337078 None:intergenic 25.0%
! AAAAAAAGAAGGAATGGAAA+TGG + chr8_1:63337174-63337193 None:intergenic 25.0%
!!! CTTTCGATCTTATTTTTACT+AGG - chr8_1:63337205-63337224 Msa1206360:three_prime_UTR 25.0%
! ATTCTATTGTGCAATTTGAT+TGG - chr8_1:63337296-63337315 Msa1206360:CDS 25.0%
! TTCTATTGTGCAATTTGATT+GGG - chr8_1:63337297-63337316 Msa1206360:CDS 25.0%
! TGATTGTTTCATCTTCATAA+AGG - chr8_1:63337341-63337360 Msa1206360:intron 25.0%
! GATTGTTTCATCTTCATAAA+GGG - chr8_1:63337342-63337361 Msa1206360:intron 25.0%
! GTCAGAAATGAATAATTGAT+CGG + chr8_1:63337545-63337564 None:intergenic 25.0%
! TATGTTATGGTGTTTCAATT+TGG - chr8_1:63337729-63337748 Msa1206360:CDS 25.0%
! ATGTTATGGTGTTTCAATTT+GGG - chr8_1:63337730-63337749 Msa1206360:CDS 25.0%
!! TTTGAGTTTATATGCTTATG+AGG - chr8_1:63338006-63338025 Msa1206360:intron 25.0%
!! CATTTTCAGAAACAATGTTT+TGG - chr8_1:63338251-63338270 Msa1206360:CDS 25.0%
! AAATGAAAAACATGAAGCAT+TGG - chr8_1:63338382-63338401 Msa1206360:intron 25.0%
!!! TTTGGTTTTTTGTTAGAAGT+AGG - chr8_1:63338454-63338473 Msa1206360:intron 25.0%
! TGTTGAGATATATCATATGA+CGG + chr8_1:63338520-63338539 None:intergenic 25.0%
! TCATATGATATATCTCAACA+TGG - chr8_1:63338520-63338539 Msa1206360:intron 25.0%
! CATATGATATATCTCAACAT+GGG - chr8_1:63338521-63338540 Msa1206360:intron 25.0%
!! AATGGAAAATAATTGATAGC+AGG + chr8_1:63338754-63338773 None:intergenic 25.0%
!! CTATCAATTATTTTCCATTG+TGG - chr8_1:63338755-63338774 Msa1206360:intron 25.0%
! TGAAACCAAAATTTGATACA+CGG + chr8_1:63339040-63339059 None:intergenic 25.0%
! AAAATGTTATCTGGATTAAG+AGG + chr8_1:63339297-63339316 None:intergenic 25.0%
! AAATGCACAAAAATGTTATC+TGG + chr8_1:63339306-63339325 None:intergenic 25.0%
! AGAAAATATCTTTGCAAATC+GGG - chr8_1:63339440-63339459 Msa1206360:intron 25.0%
! TTGCAGAGAACAAAAATTTA+TGG + chr8_1:63339507-63339526 None:intergenic 25.0%
! ATTTCTATCTTCAAAGAAAC+CGG + chr8_1:63339605-63339624 None:intergenic 25.0%
! TTAAGGTAAACAACAATAAG+TGG + chr8_1:63339891-63339910 None:intergenic 25.0%
! TGTCCTGATATATTATGTTT+GGG - chr8_1:63339931-63339950 Msa1206360:intron 25.0%
! AATCCCAAACATAATATATC+AGG + chr8_1:63339937-63339956 None:intergenic 25.0%
!!! TTATTTTTGTCATTGATGCA+GGG - chr8_1:63340689-63340708 Msa1206360:intron 25.0%
GGTTGAAAAATCTTAACTCA+AGG - chr8_1:63337363-63337382 Msa1206360:intron 30.0%
AATTATTCATTTCTGACACG+CGG - chr8_1:63337548-63337567 Msa1206360:intron 30.0%
ATTCGTTTCTTTCAGTGAAA+TGG - chr8_1:63337937-63337956 Msa1206360:intron 30.0%
TTCAGTGAAATGGTAGTTAT+TGG - chr8_1:63337947-63337966 Msa1206360:intron 30.0%
AATGGTAGTTATTGGATTGT+AGG - chr8_1:63337955-63337974 Msa1206360:intron 30.0%
AATGTAAATTCACACTAAGC+AGG + chr8_1:63338033-63338052 None:intergenic 30.0%
GCTTAGTGTGAATTTACATT+TGG - chr8_1:63338033-63338052 Msa1206360:CDS 30.0%
TAAAACTGTTAACAAGGAGA+TGG - chr8_1:63338169-63338188 Msa1206360:CDS 30.0%
TAGTAACAATTGTGATACAG+AGG - chr8_1:63338202-63338221 Msa1206360:CDS 30.0%
AGTTGTAAAAGAAAATGGTG+AGG - chr8_1:63338314-63338333 Msa1206360:intron 30.0%
GAAAATGGTGAGGAATATAT+TGG - chr8_1:63338324-63338343 Msa1206360:intron 30.0%
!! ATGAAGCATTGGAGATAAAT+GGG - chr8_1:63338393-63338412 Msa1206360:intron 30.0%
! TTTTTGTTAGAAGTAGGCAA+AGG - chr8_1:63338460-63338479 Msa1206360:intron 30.0%
TTACGCACATTTACAAAACA+CGG + chr8_1:63338571-63338590 None:intergenic 30.0%
GTAAACTAAACCGAATATCA+TGG - chr8_1:63338629-63338648 Msa1206360:intron 30.0%
GAAACAAAAATGAGACTTGT+TGG - chr8_1:63338851-63338870 Msa1206360:intron 30.0%
!! ACTTGTTGGTTCATTTGTTT+CGG - chr8_1:63338865-63338884 Msa1206360:intron 30.0%
AAAATGTTTCCATCTTGTGA+TGG - chr8_1:63338956-63338975 Msa1206360:CDS 30.0%
ATAACAAATCCATCACAAGA+TGG + chr8_1:63338968-63338987 None:intergenic 30.0%
!! ATCTTGTGATGGATTTGTTA+TGG - chr8_1:63338967-63338986 Msa1206360:intron 30.0%
! TAAACCCGTGTATCAAATTT+TGG - chr8_1:63339032-63339051 Msa1206360:intron 30.0%
GAAACCAAAATTTGATACAC+GGG + chr8_1:63339039-63339058 None:intergenic 30.0%
AACTCTGCATAAGAAATTGT+AGG - chr8_1:63339156-63339175 Msa1206360:intron 30.0%
ACTCTGCATAAGAAATTGTA+GGG - chr8_1:63339157-63339176 Msa1206360:intron 30.0%
TTTGCAGGAAGAATTTCAAT+TGG - chr8_1:63339395-63339414 Msa1206360:intron 30.0%
ACTATGAAGTTGACAAATAC+TGG + chr8_1:63339551-63339570 None:intergenic 30.0%
ACTTCATAGTTTATACACCT+AGG - chr8_1:63339561-63339580 Msa1206360:intron 30.0%
AGATGAGAAAAATAAAGCCT+AGG + chr8_1:63339581-63339600 None:intergenic 30.0%
TTTCTATCTTCAAAGAAACC+GGG + chr8_1:63339604-63339623 None:intergenic 30.0%
AATTTCTGACATCGTATCAA+TGG + chr8_1:63339729-63339748 None:intergenic 30.0%
TTGATCTATTTGATGTCAAG+AGG - chr8_1:63339764-63339783 Msa1206360:intron 30.0%
AGATCAAAGTGAGGAATTTA+AGG + chr8_1:63339908-63339927 None:intergenic 30.0%
GTGTCCTGATATATTATGTT+TGG - chr8_1:63339930-63339949 Msa1206360:intron 30.0%
!!! AAACGTGTCATTTTCATTGA+GGG + chr8_1:63340049-63340068 None:intergenic 30.0%
!! TTGCTTTTCTTTCCCTTATT+TGG - chr8_1:63340196-63340215 Msa1206360:five_prime_UTR 30.0%
GATAGAAACAATTCTAGACA+AGG - chr8_1:63340291-63340310 Msa1206360:intron 30.0%
!!! AGTTAGACATTGCTTTTTTC+TGG - chr8_1:63340464-63340483 Msa1206360:intron 30.0%
!! CAATGTCTATTTTTCCATCT+TGG + chr8_1:63340517-63340536 None:intergenic 30.0%
GAAAAATAGACATTGTTGAG+TGG - chr8_1:63340522-63340541 Msa1206360:intron 30.0%
ATATACCATGAAAATAGTCC+AGG + chr8_1:63340613-63340632 None:intergenic 30.0%
!!! GTTATTTTTGTCATTGATGC+AGG - chr8_1:63340688-63340707 Msa1206360:intron 30.0%
! TATTGAGAGTACACAACTTT+AGG - chr8_1:63340802-63340821 Msa1206360:intron 30.0%
!! CTCATTGAAATTTTTCAGTC+AGG - chr8_1:63340949-63340968 Msa1206360:five_prime_UTR 30.0%
TACAAGGAAAAGACATAACT+TGG + chr8_1:63340978-63340997 None:intergenic 30.0%
GAAGAGAATATCGAGATTCA+CGG + chr8_1:63337013-63337032 None:intergenic 35.0%
AGGTAGAGAATAGGTGTAAA+GGG + chr8_1:63337096-63337115 None:intergenic 35.0%
CAAAAAGTGAGGTAGAGAAT+AGG + chr8_1:63337105-63337124 None:intergenic 35.0%
ATTGATCGGTATGACAACAT+GGG + chr8_1:63337531-63337550 None:intergenic 35.0%
AATTGATCGGTATGACAACA+TGG + chr8_1:63337532-63337551 None:intergenic 35.0%
! ATGGTGTTTCAATTTGGGTT+TGG - chr8_1:63337735-63337754 Msa1206360:CDS 35.0%
! GTTTCAATTTGGGTTTGGAT+TGG - chr8_1:63337740-63337759 Msa1206360:CDS 35.0%
CAATTGTGATACAGAGGATA+TGG - chr8_1:63338208-63338227 Msa1206360:CDS 35.0%
!! CATGAAGCATTGGAGATAAA+TGG - chr8_1:63338392-63338411 Msa1206360:intron 35.0%
TGCAAACTGGCAATAACTTA+CGG + chr8_1:63338419-63338438 None:intergenic 35.0%
AAGTGAACTGTATTGCAAAC+TGG + chr8_1:63338432-63338451 None:intergenic 35.0%
GCAATACAGTTCACTTTGTT+TGG - chr8_1:63338436-63338455 Msa1206360:intron 35.0%
! TGCTTTTCTTCTACTCATTG+CGG - chr8_1:63338604-63338623 Msa1206360:CDS 35.0%
! GAAAGAAAGCAACCTTTTCT+GGG + chr8_1:63338791-63338810 None:intergenic 35.0%
! TGAAAGAAAGCAACCTTTTC+TGG + chr8_1:63338792-63338811 None:intergenic 35.0%
GTGGTTCAATTGAAATTGCT+GGG - chr8_1:63338887-63338906 Msa1206360:intron 35.0%
GCATTTGGAAGAGCTTATTT+CGG + chr8_1:63339275-63339294 None:intergenic 35.0%
!! TATCTGGATTAAGAGGCATT+TGG + chr8_1:63339290-63339309 None:intergenic 35.0%
TTTAGCCTGTAATGTGATCA+TGG - chr8_1:63339362-63339381 Msa1206360:intron 35.0%
TTAGCCTGTAATGTGATCAT+GGG - chr8_1:63339363-63339382 Msa1206360:intron 35.0%
AATACCCATGATCACATTAC+AGG + chr8_1:63339370-63339389 None:intergenic 35.0%
!!! GCTTTATTTTTCTCATCTCC+CGG - chr8_1:63339583-63339602 Msa1206360:intron 35.0%
TCTATTTGATGTCAAGAGGA+AGG - chr8_1:63339768-63339787 Msa1206360:intron 35.0%
CTATTTGATGTCAAGAGGAA+GGG - chr8_1:63339769-63339788 Msa1206360:intron 35.0%
AGGTAAACAACAATAAGTGG+AGG + chr8_1:63339888-63339907 None:intergenic 35.0%
! ATTTTCCTGCAGTCTCATTT+AGG - chr8_1:63339954-63339973 Msa1206360:intron 35.0%
! CTCTATGATTTGCACAATAC+TGG - chr8_1:63339977-63339996 Msa1206360:intron 35.0%
!!! CAAACGTGTCATTTTCATTG+AGG + chr8_1:63340050-63340069 None:intergenic 35.0%
!! CAGAACAAAAGTGTTCACTT+AGG + chr8_1:63340101-63340120 None:intergenic 35.0%
! CTAAGTGAACACTTTTGTTC+TGG - chr8_1:63340099-63340118 Msa1206360:intron 35.0%
TGTCAGACATCACCAAATAA+GGG + chr8_1:63340211-63340230 None:intergenic 35.0%
! TTTCGAGTCTGAAATGAAGT+TGG - chr8_1:63340258-63340277 Msa1206360:intron 35.0%
AACAATATTTCTTCTGCAGG+TGG + chr8_1:63340409-63340428 None:intergenic 35.0%
AGCAACAATATTTCTTCTGC+AGG + chr8_1:63340412-63340431 None:intergenic 35.0%
! GTCATGATTTTGAGCAATGA+AGG + chr8_1:63340569-63340588 None:intergenic 35.0%
! TATGTCCTGGACTATTTTCA+TGG - chr8_1:63340605-63340624 Msa1206360:intron 35.0%
AAATTACAGCTCACTGAGAA+AGG + chr8_1:63340917-63340936 None:intergenic 35.0%
GAGGTAGAGAATAGGTGTAA+AGG + chr8_1:63337097-63337116 None:intergenic 40.0%
GCGAGTAGAAACAAAAAGTG+AGG + chr8_1:63337116-63337135 None:intergenic 40.0%
! TTGGGTTTGGATTGGATGAA+TGG - chr8_1:63337748-63337767 Msa1206360:CDS 40.0%
! TGGGTTTGGATTGGATGAAT+GGG - chr8_1:63337749-63337768 Msa1206360:CDS 40.0%
TAAATCAGGTAAACCTGCAC+TGG - chr8_1:63337788-63337807 Msa1206360:intron 40.0%
CTCACCAACCAACCATAAAT+GGG - chr8_1:63337832-63337851 Msa1206360:intron 40.0%
TGAAACAGCCCATTTATGGT+TGG + chr8_1:63337843-63337862 None:intergenic 40.0%
GAGTTGAAACAGCCCATTTA+TGG + chr8_1:63337847-63337866 None:intergenic 40.0%
GTTTGTGATGCAAGAATCAC+GGG + chr8_1:63337904-63337923 None:intergenic 40.0%
CGTTTGTGATGCAAGAATCA+CGG + chr8_1:63337905-63337924 None:intergenic 40.0%
CGTGATTCTTGCATCACAAA+CGG - chr8_1:63337903-63337922 Msa1206360:intron 40.0%
AACTGTTAACAAGGAGATGG+AGG - chr8_1:63338172-63338191 Msa1206360:CDS 40.0%
TTGTTAGAAGTAGGCAAAGG+TGG - chr8_1:63338463-63338482 Msa1206360:intron 40.0%
GAGATATATCATATGACGGC+AGG + chr8_1:63338516-63338535 None:intergenic 40.0%
! TCTCAACATGGGCTATATGA+AGG - chr8_1:63338532-63338551 Msa1206360:intron 40.0%
!! TGTTGGTTCATTTGTTTCGG+TGG - chr8_1:63338868-63338887 Msa1206360:intron 40.0%
GGTGGTTCAATTGAAATTGC+TGG - chr8_1:63338886-63338905 Msa1206360:intron 40.0%
! AGCAGTTCTGTTGTTGATGA+TGG - chr8_1:63339108-63339127 Msa1206360:intron 40.0%
!! GCAGTTCTGTTGTTGATGAT+GGG - chr8_1:63339109-63339128 Msa1206360:intron 40.0%
!! TGATGATGGGCTAATAAGCA+AGG - chr8_1:63339122-63339141 Msa1206360:intron 40.0%
AGAGCTTGTGACAACAACTT+AGG + chr8_1:63339222-63339241 None:intergenic 40.0%
CATGGGTATTCTTTCTTTGC+AGG - chr8_1:63339380-63339399 Msa1206360:intron 40.0%
TTGACAAATACTGGAGCCAT+AGG + chr8_1:63339542-63339561 None:intergenic 40.0%
! GAACACTTTTGTTCTGGTCT+TGG - chr8_1:63340105-63340124 Msa1206360:intron 40.0%
CTGTCAGACATCACCAAATA+AGG + chr8_1:63340212-63340231 None:intergenic 40.0%
!! CTTATTTGGTGATGTCTGAC+AGG - chr8_1:63340210-63340229 Msa1206360:five_prime_UTR 40.0%
!! TTTTTCTGGCCAGACTTTCT+TGG - chr8_1:63340478-63340497 Msa1206360:intron 40.0%
AATAGTCCAGGACATACCTT+AGG + chr8_1:63340601-63340620 None:intergenic 40.0%
TTGAGAGCAAACACAGCTTT+AGG - chr8_1:63340770-63340789 Msa1206360:intron 40.0%
!! TATGGTTGGTTGGTGAGCAA+AGG + chr8_1:63337829-63337848 None:intergenic 45.0%
GCTCACCAACCAACCATAAA+TGG - chr8_1:63337831-63337850 Msa1206360:intron 45.0%
ACAGCCCATTTATGGTTGGT+TGG + chr8_1:63337839-63337858 None:intergenic 45.0%
AAGCCAACAAGACAGTATCC+TGG - chr8_1:63337868-63337887 Msa1206360:intron 45.0%
AGCCAACAAGACAGTATCCT+GGG - chr8_1:63337869-63337888 Msa1206360:intron 45.0%
TTCCCAGGATACTGTCTTGT+TGG + chr8_1:63337874-63337893 None:intergenic 45.0%
AAGACAGTATCCTGGGAAAG+AGG - chr8_1:63337876-63337895 Msa1206360:intron 45.0%
ATATCATATGACGGCAGGTG+AGG + chr8_1:63338511-63338530 None:intergenic 45.0%
AGGACACACAGATCAAAGTG+AGG + chr8_1:63339917-63339936 None:intergenic 45.0%
TAGAGCCTAAATGAGACTGC+AGG + chr8_1:63339962-63339981 None:intergenic 45.0%
AGCAATCATCATCTCACCTC+TGG + chr8_1:63340016-63340035 None:intergenic 45.0%
! CGAGTCTGAAATGAAGTTGG+CGG - chr8_1:63340261-63340280 Msa1206360:intron 45.0%
AGTCAGCATCCAAGAAAGTC+TGG + chr8_1:63340490-63340509 None:intergenic 45.0%
!! GATGCTGACTTGAACCAAGA+TGG - chr8_1:63340500-63340519 Msa1206360:intron 45.0%
TCATGACACTTCCCTACCTA+AGG - chr8_1:63340582-63340601 Msa1206360:intron 45.0%
TCCAGGACATACCTTAGGTA+GGG + chr8_1:63340596-63340615 None:intergenic 45.0%
!!! TTTTATTATATAATATGTTA+TGG - chr8_1:63337716-63337735 Msa1206360:intron 5.0%
! TGTTTCTACTCGCTGCTAGC+TGG - chr8_1:63337123-63337142 Msa1206360:three_prime_UTR 50.0%
! GTTGGTGAGCAAAGGATGCA+CGG + chr8_1:63337821-63337840 None:intergenic 50.0%
GGATTGTAGGCTGTTGCGAT+TGG - chr8_1:63337968-63337987 Msa1206360:intron 50.0%
GCAAGCATGTCAACTGCCTA+TGG - chr8_1:63339523-63339542 Msa1206360:intron 50.0%
TGTCTTCTAGCGCTGCGTTT+GGG + chr8_1:63339840-63339859 None:intergenic 50.0%
TTGTCTTCTAGCGCTGCGTT+TGG + chr8_1:63339841-63339860 None:intergenic 50.0%
!! TGGCTTTATAGAGCGTCCAG+AGG - chr8_1:63339997-63340016 Msa1206360:intron 50.0%
TCCCTACCTAAGGTATGTCC+TGG - chr8_1:63340592-63340611 Msa1206360:intron 50.0%
GTCCAGGACATACCTTAGGT+AGG + chr8_1:63340597-63340616 None:intergenic 50.0%
CGTCGAAAGCTTCTGACTGC+CGG - chr8_1:63337571-63337590 Msa1206360:intron 55.0%
ATCACGGGATCCTCTTTCCC+AGG + chr8_1:63337889-63337908 None:intergenic 55.0%
!! GCAACCTTTTCTGGGTGTCG+TGG + chr8_1:63338783-63338802 None:intergenic 55.0%
GCACGGTACAGAACCAGTGC+AGG + chr8_1:63337804-63337823 None:intergenic 60.0%
!! TGGGTGTCGTGGTGCCACAA+TGG + chr8_1:63338772-63338791 None:intergenic 60.0%
GGCACCACGACACCCAGAAA+AGG - chr8_1:63338776-63338795 Msa1206360:intron 60.0%
CTTCTAGCGCTGCGTTTGGG+TGG + chr8_1:63339837-63339856 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63336995 63341041 63336995 ID=Msa1206360;Name=Msa1206360
chr8_1 mRNA 63336995 63341041 63336995 ID=Msa1206360-mRNA-1;Parent=Msa1206360;Name=Msa1206360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=204|1|1|1|0.75|0.66|9|268|213
chr8_1 exon 63336995 63337326 63336995 ID=Msa1206360-mRNA-1:exon:20567;Parent=Msa1206360-mRNA-1
chr8_1 exon 63337433 63337545 63337433 ID=Msa1206360-mRNA-1:exon:20566;Parent=Msa1206360-mRNA-1
chr8_1 exon 63337724 63337804 63337724 ID=Msa1206360-mRNA-1:exon:20565;Parent=Msa1206360-mRNA-1
chr8_1 exon 63338018 63338070 63338018 ID=Msa1206360-mRNA-1:exon:20564;Parent=Msa1206360-mRNA-1
chr8_1 exon 63338168 63338276 63338168 ID=Msa1206360-mRNA-1:exon:20563;Parent=Msa1206360-mRNA-1
chr8_1 exon 63338575 63338634 63338575 ID=Msa1206360-mRNA-1:exon:20562;Parent=Msa1206360-mRNA-1
chr8_1 exon 63338893 63338975 63338893 ID=Msa1206360-mRNA-1:exon:20561;Parent=Msa1206360-mRNA-1
chr8_1 exon 63340108 63340240 63340108 ID=Msa1206360-mRNA-1:exon:20560;Parent=Msa1206360-mRNA-1
chr8_1 exon 63340892 63341041 63340892 ID=Msa1206360-mRNA-1:exon:20559;Parent=Msa1206360-mRNA-1
chr8_1 five_prime_UTR 63340892 63341041 63340892 ID=Msa1206360-mRNA-1:five_prime_utr;Parent=Msa1206360-mRNA-1
chr8_1 five_prime_UTR 63340187 63340240 63340187 ID=Msa1206360-mRNA-1:five_prime_utr;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63340108 63340186 63340108 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63338893 63338975 63338893 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63338575 63338634 63338575 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63338168 63338276 63338168 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63338018 63338070 63338018 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63337724 63337804 63337724 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63337433 63337545 63337433 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 CDS 63337263 63337326 63337263 ID=Msa1206360-mRNA-1:cds;Parent=Msa1206360-mRNA-1
chr8_1 three_prime_UTR 63336995 63337262 63336995 ID=Msa1206360-mRNA-1:three_prime_utr;Parent=Msa1206360-mRNA-1
Gene Sequence

>Msa1206360

ATGGGCTGTTTCAACTCTAAGCCAACAAGACAGTATCCTGGGAAAGAGGATCCCGTGATTCTTGCATCACAAACGGCTTTCACTGTCAGTGAAGTTGAAGCATTATTCGAGCTTTTTAAGAGCATCAGCAGTTCTGTTGTTGATGATGGGCTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAAGAAAAAAGAAAATATCTTTGCAAATCGGATCTTTGATCTATTTGATGTCAAGAGGAAGGGCGTTATTGATTTTGATGACTTCGTTAGATCTCTCAATGTCTTCCACCCAAACGCAGCGCTAGAAGACAAGATAGAATTCTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGTCCAGAGGTCAAGCAAATGTTAATTGCACTTCTTTTCGAGTCTGAAATGAAGTTGGCGGATGATGTGATAGAAACAATTCTAGACAAGACTTTCTTGGATGCTGACTTGAACCAAGATGGAAAAATAGACATTGTTGAGTGGCGAAAATTTGTTTCTGAAAATCCTTCATTGCTCAAAATCATGACACTTCCCTACCTAAGGGACATAACAACTTCTTTCCCAAGTTTTGTATTTAATTCTAACGTGGATGAAATTGTTGCTTGA

Protein sequence

>Msa1206360

MGCFNSKPTRQYPGKEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNKKKENIFANRIFDLFDVKRKGVIDFDDFVRSLNVFHPNAALEDKIEFSFRLYDLHNTGFIERPEVKQMLIALLFESEMKLADDVIETILDKTFLDADLNQDGKIDIVEWRKFVSENPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIVA*