Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656300 | XP_013446518.1 | 94.257 | 296 | 13 | 2 | 34 | 326 | 18 | 312 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0656300 | Msa0700100 | 0.850014 | 2.232500e-60 | -8.615850e-47 |
| Msa0656300 | Msa0942730 | 0.810648 | 1.038381e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656300 | MtrunA17_Chr8g0376951 | 94.257 | 296 | 13 | 2 | 34 | 326 | 18 | 312 | 0.0 | 566 |
| Msa0656300 | MtrunA17_Chr2g0296531 | 40.984 | 244 | 124 | 6 | 91 | 320 | 103 | 340 | 4.29e-55 | 182 |
| Msa0656300 | MtrunA17_Chr2g0323001 | 40.574 | 244 | 125 | 6 | 91 | 320 | 103 | 340 | 1.06e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656300 | AT1G67660.2 | 66.058 | 274 | 81 | 3 | 64 | 325 | 32 | 305 | 5.33e-134 | 383 |
| Msa0656300 | AT1G67660.3 | 66.058 | 274 | 81 | 3 | 64 | 325 | 61 | 334 | 7.64e-134 | 384 |
| Msa0656300 | AT1G67660.1 | 66.058 | 274 | 81 | 3 | 64 | 325 | 82 | 355 | 1.21e-133 | 384 |
| Msa0656300 | AT1G13810.1 | 36.327 | 245 | 136 | 5 | 93 | 322 | 62 | 301 | 5.99e-47 | 160 |
Find 69 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGGGAAGCTTTGTTGTT+AGG | 0.238184 | 4_3:+65575537 | Msa0656300:CDS |
| CTATTACATGCCTCAAGTTC+AGG | 0.257165 | 4_3:+65575365 | Msa0656300:CDS |
| TCAGGGTCAAATGGAGATTA+TGG | 0.260537 | 4_3:+65575383 | Msa0656300:CDS |
| AGTTAAGTGTCCTTATAATA+AGG | 0.269945 | 4_3:+65575302 | Msa0656300:CDS |
| TTGTTAGAAATCGTGAATAT+TGG | 0.278665 | 4_3:+65575463 | Msa0656300:CDS |
| TTCAAAGAAATGCTATGAAT+TGG | 0.293866 | 4_3:+65575130 | Msa0656300:CDS |
| TTAGTACTGCATTAGGGTTT+TGG | 0.302003 | 4_3:+65575037 | Msa0656300:CDS |
| TGTTCTTGGTACCGGAATAT+TGG | 0.306883 | 4_3:+65575278 | Msa0656300:CDS |
| TCAGGCTTACCCTTATTATA+AGG | 0.309587 | 4_3:-65575312 | None:intergenic |
| ACCCATCTTCGCTATTTGAT+TGG | 0.333833 | 4_3:+65574422 | Msa0656300:CDS |
| AACAACAAAGCTTCCCTTGC+CGG | 0.335954 | 4_3:-65575534 | None:intergenic |
| ATGGGATTCTCAGAGAGTTT+TGG | 0.342835 | 4_3:+65575496 | Msa0656300:CDS |
| CAAGGGAAGCTTTGTTGTTA+GGG | 0.349473 | 4_3:+65575538 | Msa0656300:CDS |
| TCAAAGAAATGCTATGAATT+GGG | 0.356628 | 4_3:+65575131 | Msa0656300:CDS |
| AGCACATTTAGTACTGCATT+AGG | 0.371913 | 4_3:+65575030 | Msa0656300:CDS |
| GCGTCGCCTGACGGTGTTCT+TGG | 0.374201 | 4_3:+65575264 | Msa0656300:CDS |
| TGTTAGAAATCGTGAATATT+GGG | 0.374315 | 4_3:+65575464 | Msa0656300:CDS |
| TTCGCTGATTCCGGCGGAAG+AGG | 0.376482 | 4_3:-65574480 | None:intergenic |
| TTCCGCAACGTTCGGAAGAA+TGG | 0.380577 | 4_3:+65574977 | Msa0656300:CDS |
| ACACTTAACTTCCAATATTC+CGG | 0.387205 | 4_3:-65575289 | None:intergenic |
| AATGGGTTGATTTGTATTGT+TGG | 0.389762 | 4_3:+65575412 | Msa0656300:CDS |
| TTCCATGGCAAACCTGTCTC+AGG | 0.395522 | 4_3:-65575330 | None:intergenic |
| ATTCGAAACAGTCTTATGAT+TGG | 0.396472 | 4_3:+65575235 | Msa0656300:CDS |
| GCACATTTAGTACTGCATTA+GGG | 0.406562 | 4_3:+65575031 | Msa0656300:CDS |
| TTGGTGGGAAAACGTGATTC+CGG | 0.412330 | 4_3:+65575515 | Msa0656300:CDS |
| CCTAGCAGAATTAAGCCATA+TGG | 0.413449 | 4_3:+65574844 | Msa0656300:CDS |
| GCCTCAAGTTCAGGGTCAAA+TGG | 0.417390 | 4_3:+65575374 | Msa0656300:CDS |
| TGATGATGTTGTAGTACATA+TGG | 0.426915 | 4_3:-65574890 | None:intergenic |
| CGAAATATAGTACTTCCATT+TGG | 0.450018 | 4_3:-65575438 | None:intergenic |
| GTTGTTAGGGTCTAAAGATC+AGG | 0.451891 | 4_3:+65575551 | Msa0656300:CDS |
| GGCTGATGTTCCGCAACGTT+CGG | 0.452606 | 4_3:+65574969 | Msa0656300:CDS |
| CTCCAATCAAATAGCGAAGA+TGG | 0.453180 | 4_3:-65574424 | None:intergenic |
| GTTAAGTGTCCTTATAATAA+GGG | 0.460463 | 4_3:+65575303 | Msa0656300:CDS |
| TGGGAGGGAGGTGACTTCGA+TGG | 0.467844 | 4_3:+65575200 | Msa0656300:CDS |
| GGGAGGGAGGTGACTTCGAT+GGG | 0.473979 | 4_3:+65575201 | Msa0656300:CDS |
| TATTACATGCCTCAAGTTCA+GGG | 0.475534 | 4_3:+65575366 | Msa0656300:CDS |
| AGCATTTGCTTCACCGGCAC+CGG | 0.476435 | 4_3:+65574948 | Msa0656300:CDS |
| ATTTACAGCATTTGCTTCAC+CGG | 0.476975 | 4_3:+65574942 | Msa0656300:CDS |
| GCCTCTACACATAAATTGAC+TGG | 0.480024 | 4_3:+65575591 | Msa0656300:CDS |
| GAACGTTGCGGAACATCAGC+CGG | 0.496988 | 4_3:-65574967 | None:intergenic |
| TGCGGAACATCAGCCGGTGC+CGG | 0.504036 | 4_3:-65574961 | None:intergenic |
| AAACAGTCTTATGATTGGCT+TGG | 0.505920 | 4_3:+65575240 | Msa0656300:CDS |
| GTCAATTTATGTGTAGAGGC+AGG | 0.506154 | 4_3:-65575588 | None:intergenic |
| AATAAGGGTAAGCCTGAGAC+AGG | 0.506865 | 4_3:+65575318 | Msa0656300:CDS |
| TTGTATTGTTGGACGCCAAA+TGG | 0.508428 | 4_3:+65575423 | Msa0656300:CDS |
| TCCATTTGACCCTGAACTTG+AGG | 0.510243 | 4_3:-65575375 | None:intergenic |
| CTATTATGCAGAGAAATTGC+AGG | 0.517198 | 4_3:+65575657 | Msa0656300:CDS |
| GAATATTGGGATATAATACA+TGG | 0.523100 | 4_3:+65575477 | Msa0656300:CDS |
| CCATATGGCTTAATTCTGCT+AGG | 0.530559 | 4_3:-65574844 | None:intergenic |
| TGGCTTGGCGCGTCGCCTGA+CGG | 0.530902 | 4_3:+65575255 | Msa0656300:CDS |
| AGAATGGTTCGCTCTTCGTA+AGG | 0.534956 | 4_3:+65574993 | Msa0656300:CDS |
| CCGGTACCAAGAACACCGTC+AGG | 0.549096 | 4_3:-65575270 | None:intergenic |
| TCCAGTCAATTTATGTGTAG+AGG | 0.552337 | 4_3:-65575592 | None:intergenic |
| CCTGACGGTGTTCTTGGTAC+CGG | 0.552937 | 4_3:+65575270 | Msa0656300:CDS |
| CAAAGAAATGCTATGAATTG+GGG | 0.562081 | 4_3:+65575132 | Msa0656300:CDS |
| GGAAAACGTGATTCCGGCAA+GGG | 0.564224 | 4_3:+65575521 | Msa0656300:CDS |
| ACTTGAGGCATGTAATAGAA+TGG | 0.565196 | 4_3:-65575360 | None:intergenic |
| AAAACGCGAACCTCTTCCGC+CGG | 0.574247 | 4_3:+65574470 | Msa0656300:CDS |
| GAAGCAAATGCTGTAAATGA+TGG | 0.578930 | 4_3:-65574937 | None:intergenic |
| TCCAATCAAATAGCGAAGAT+GGG | 0.580973 | 4_3:-65574423 | None:intergenic |
| AGCCTGAGACAGGTTTGCCA+TGG | 0.592845 | 4_3:+65575328 | Msa0656300:CDS |
| AACCATTCTTCCGAACGTTG+CGG | 0.616608 | 4_3:-65574979 | None:intergenic |
| ACGCACCGATTTCAACCTGC+CGG | 0.620985 | 4_3:+65574447 | Msa0656300:CDS |
| GGGAAAACGTGATTCCGGCA+AGG | 0.625422 | 4_3:+65575520 | Msa0656300:CDS |
| GAATTGGGGAGTGCTTAATG+AGG | 0.644725 | 4_3:+65575146 | Msa0656300:CDS |
| TTGGGGAGTGCTTAATGAGG+CGG | 0.645877 | 4_3:+65575149 | Msa0656300:CDS |
| GTGGTCGTCGTGCTGAGTTG+TGG | 0.647045 | 4_3:+65575064 | Msa0656300:CDS |
| AATATTGGGATATAATACAT+GGG | 0.663115 | 4_3:+65575478 | Msa0656300:CDS |
| GCAAATGCTGTAAATGATGG+AGG | 0.672307 | 4_3:-65574934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTAAAATGAAAAG+AGG | - | chr4_3:65574524-65574543 | None:intergenic | 15.0% |
| !!! | AAAAGTATACAAAAATTACT+GGG | + | chr4_3:65575181-65575200 | Msa0656300:CDS | 15.0% |
| !! | TAAAATTGTAAAATGAAAAG+AGG | - | chr4_3:65574524-65574543 | None:intergenic | 15.0% |
| !!! | AAAAGTATACAAAAATTACT+GGG | + | chr4_3:65575181-65575200 | Msa0656300:CDS | 15.0% |
| !! | AAAAGCTACTTATATTTGTT+TGG | + | chr4_3:65574324-65574343 | Msa0656300:intron | 20.0% |
| !! | AAAGCTACTTATATTTGTTT+GGG | + | chr4_3:65574325-65574344 | Msa0656300:intron | 20.0% |
| !!! | GAAAAGTATACAAAAATTAC+TGG | + | chr4_3:65575180-65575199 | Msa0656300:CDS | 20.0% |
| !! | AATATTGGGATATAATACAT+GGG | + | chr4_3:65575478-65575497 | Msa0656300:CDS | 20.0% |
| !! | AAAAGCTACTTATATTTGTT+TGG | + | chr4_3:65574324-65574343 | Msa0656300:intron | 20.0% |
| !! | AAAGCTACTTATATTTGTTT+GGG | + | chr4_3:65574325-65574344 | Msa0656300:intron | 20.0% |
| !!! | GAAAAGTATACAAAAATTAC+TGG | + | chr4_3:65575180-65575199 | Msa0656300:CDS | 20.0% |
| !! | AATATTGGGATATAATACAT+GGG | + | chr4_3:65575478-65575497 | Msa0656300:CDS | 20.0% |
| !! | TCTTCAAAATGAAATGGATT+GGG | - | chr4_3:65574401-65574420 | None:intergenic | 25.0% |
| ! | TTCTTCAAAATGAAATGGAT+TGG | - | chr4_3:65574402-65574421 | None:intergenic | 25.0% |
| !!! | CAATCAGTTATGGTTTTATT+TGG | + | chr4_3:65574648-65574667 | Msa0656300:intron | 25.0% |
| !! | TTATTTGGCTTATAGCTTAT+AGG | + | chr4_3:65574663-65574682 | Msa0656300:intron | 25.0% |
| ! | AATGGATATGAGAATTTCAT+CGG | + | chr4_3:65574768-65574787 | Msa0656300:intron | 25.0% |
| !! | CTAAAATGATCTTTTCCATA+TGG | - | chr4_3:65574862-65574881 | None:intergenic | 25.0% |
| ! | TTCAAAGAAATGCTATGAAT+TGG | + | chr4_3:65575130-65575149 | Msa0656300:CDS | 25.0% |
| ! | TCAAAGAAATGCTATGAATT+GGG | + | chr4_3:65575131-65575150 | Msa0656300:CDS | 25.0% |
| ! | AGTTAAGTGTCCTTATAATA+AGG | + | chr4_3:65575302-65575321 | Msa0656300:CDS | 25.0% |
| ! | GTTAAGTGTCCTTATAATAA+GGG | + | chr4_3:65575303-65575322 | Msa0656300:CDS | 25.0% |
| ! | TTGTTAGAAATCGTGAATAT+TGG | + | chr4_3:65575463-65575482 | Msa0656300:CDS | 25.0% |
| ! | TGTTAGAAATCGTGAATATT+GGG | + | chr4_3:65575464-65575483 | Msa0656300:CDS | 25.0% |
| ! | GAATATTGGGATATAATACA+TGG | + | chr4_3:65575477-65575496 | Msa0656300:CDS | 25.0% |
| !! | TCTTCAAAATGAAATGGATT+GGG | - | chr4_3:65574401-65574420 | None:intergenic | 25.0% |
| ! | TTCTTCAAAATGAAATGGAT+TGG | - | chr4_3:65574402-65574421 | None:intergenic | 25.0% |
| !!! | CAATCAGTTATGGTTTTATT+TGG | + | chr4_3:65574648-65574667 | Msa0656300:intron | 25.0% |
| !! | TTATTTGGCTTATAGCTTAT+AGG | + | chr4_3:65574663-65574682 | Msa0656300:intron | 25.0% |
| ! | AATGGATATGAGAATTTCAT+CGG | + | chr4_3:65574768-65574787 | Msa0656300:intron | 25.0% |
| !! | CTAAAATGATCTTTTCCATA+TGG | - | chr4_3:65574862-65574881 | None:intergenic | 25.0% |
| ! | TTCAAAGAAATGCTATGAAT+TGG | + | chr4_3:65575130-65575149 | Msa0656300:CDS | 25.0% |
| ! | TCAAAGAAATGCTATGAATT+GGG | + | chr4_3:65575131-65575150 | Msa0656300:CDS | 25.0% |
| ! | AGTTAAGTGTCCTTATAATA+AGG | + | chr4_3:65575302-65575321 | Msa0656300:CDS | 25.0% |
| ! | GTTAAGTGTCCTTATAATAA+GGG | + | chr4_3:65575303-65575322 | Msa0656300:CDS | 25.0% |
| ! | TTGTTAGAAATCGTGAATAT+TGG | + | chr4_3:65575463-65575482 | Msa0656300:CDS | 25.0% |
| ! | TGTTAGAAATCGTGAATATT+GGG | + | chr4_3:65575464-65575483 | Msa0656300:CDS | 25.0% |
| ! | GAATATTGGGATATAATACA+TGG | + | chr4_3:65575477-65575496 | Msa0656300:CDS | 25.0% |
| TGGGTTTCTTCAAAATGAAA+TGG | - | chr4_3:65574407-65574426 | None:intergenic | 30.0% | |
| AAAATGAAAAGAGGAAAACC+TGG | - | chr4_3:65574515-65574534 | None:intergenic | 30.0% | |
| TAAAACCATAACTGATTGCA+GGG | - | chr4_3:65574646-65574665 | None:intergenic | 30.0% | |
| ATAAAACCATAACTGATTGC+AGG | - | chr4_3:65574647-65574666 | None:intergenic | 30.0% | |
| ! | CTTTTGTTAGTTGTGCTTAT+AGG | + | chr4_3:65574709-65574728 | Msa0656300:intron | 30.0% |
| ! | GTTGATTGGTTATTCAAACA+GGG | + | chr4_3:65574731-65574750 | Msa0656300:intron | 30.0% |
| ! | TGATGATGTTGTAGTACATA+TGG | - | chr4_3:65574893-65574912 | None:intergenic | 30.0% |
| CAAAGAAATGCTATGAATTG+GGG | + | chr4_3:65575132-65575151 | Msa0656300:CDS | 30.0% | |
| AGTATACAAAAATTACTGGG+AGG | + | chr4_3:65575184-65575203 | Msa0656300:CDS | 30.0% | |
| GTATACAAAAATTACTGGGA+GGG | + | chr4_3:65575185-65575204 | Msa0656300:CDS | 30.0% | |
| ! | ATTCGAAACAGTCTTATGAT+TGG | + | chr4_3:65575235-65575254 | Msa0656300:CDS | 30.0% |
| ACACTTAACTTCCAATATTC+CGG | - | chr4_3:65575292-65575311 | None:intergenic | 30.0% | |
| ! | TGGAGATTATGGATTTTGAA+TGG | + | chr4_3:65575394-65575413 | Msa0656300:CDS | 30.0% |
| ! | GGAGATTATGGATTTTGAAT+GGG | + | chr4_3:65575395-65575414 | Msa0656300:CDS | 30.0% |
| !! | AATGGGTTGATTTGTATTGT+TGG | + | chr4_3:65575412-65575431 | Msa0656300:CDS | 30.0% |
| CGAAATATAGTACTTCCATT+TGG | - | chr4_3:65575441-65575460 | None:intergenic | 30.0% | |
| TGGGTTTCTTCAAAATGAAA+TGG | - | chr4_3:65574407-65574426 | None:intergenic | 30.0% | |
| AAAATGAAAAGAGGAAAACC+TGG | - | chr4_3:65574515-65574534 | None:intergenic | 30.0% | |
| TAAAACCATAACTGATTGCA+GGG | - | chr4_3:65574646-65574665 | None:intergenic | 30.0% | |
| ATAAAACCATAACTGATTGC+AGG | - | chr4_3:65574647-65574666 | None:intergenic | 30.0% | |
| ! | CTTTTGTTAGTTGTGCTTAT+AGG | + | chr4_3:65574709-65574728 | Msa0656300:intron | 30.0% |
| ! | GTTGATTGGTTATTCAAACA+GGG | + | chr4_3:65574731-65574750 | Msa0656300:intron | 30.0% |
| ! | TGATGATGTTGTAGTACATA+TGG | - | chr4_3:65574893-65574912 | None:intergenic | 30.0% |
| CAAAGAAATGCTATGAATTG+GGG | + | chr4_3:65575132-65575151 | Msa0656300:CDS | 30.0% | |
| AGTATACAAAAATTACTGGG+AGG | + | chr4_3:65575184-65575203 | Msa0656300:CDS | 30.0% | |
| GTATACAAAAATTACTGGGA+GGG | + | chr4_3:65575185-65575204 | Msa0656300:CDS | 30.0% | |
| ! | ATTCGAAACAGTCTTATGAT+TGG | + | chr4_3:65575235-65575254 | Msa0656300:CDS | 30.0% |
| ACACTTAACTTCCAATATTC+CGG | - | chr4_3:65575292-65575311 | None:intergenic | 30.0% | |
| ! | TGGAGATTATGGATTTTGAA+TGG | + | chr4_3:65575394-65575413 | Msa0656300:CDS | 30.0% |
| ! | GGAGATTATGGATTTTGAAT+GGG | + | chr4_3:65575395-65575414 | Msa0656300:CDS | 30.0% |
| !! | AATGGGTTGATTTGTATTGT+TGG | + | chr4_3:65575412-65575431 | Msa0656300:CDS | 30.0% |
| CGAAATATAGTACTTCCATT+TGG | - | chr4_3:65575441-65575460 | None:intergenic | 30.0% | |
| !! | AATGAAATGGATTGGGATTG+AGG | - | chr4_3:65574394-65574413 | None:intergenic | 35.0% |
| TCCAATCAAATAGCGAAGAT+GGG | - | chr4_3:65574426-65574445 | None:intergenic | 35.0% | |
| !!! | AAGAACTTTTTCGCTGATTC+CGG | - | chr4_3:65574492-65574511 | None:intergenic | 35.0% |
| CACATTTACTCTCTTGTATG+CGG | + | chr4_3:65574556-65574575 | Msa0656300:intron | 35.0% | |
| !! | AGTTGTGCTTATAGGTTGAT+TGG | + | chr4_3:65574717-65574736 | Msa0656300:intron | 35.0% |
| ! | GGTTGATTGGTTATTCAAAC+AGG | + | chr4_3:65574730-65574749 | Msa0656300:intron | 35.0% |
| ! | AGGGCGTAACTAATTTTGAA+TGG | + | chr4_3:65574750-65574769 | Msa0656300:intron | 35.0% |
| GAATCTAATCAAGCTAGAGT+TGG | - | chr4_3:65574800-65574819 | None:intergenic | 35.0% | |
| ! | TCTAGCTTGATTAGATTCAG+TGG | + | chr4_3:65574802-65574821 | Msa0656300:intron | 35.0% |
| GAAGCAAATGCTGTAAATGA+TGG | - | chr4_3:65574940-65574959 | None:intergenic | 35.0% | |
| ATTTACAGCATTTGCTTCAC+CGG | + | chr4_3:65574942-65574961 | Msa0656300:CDS | 35.0% | |
| AGCACATTTAGTACTGCATT+AGG | + | chr4_3:65575030-65575049 | Msa0656300:CDS | 35.0% | |
| GCACATTTAGTACTGCATTA+GGG | + | chr4_3:65575031-65575050 | Msa0656300:CDS | 35.0% | |
| ! | TTAGTACTGCATTAGGGTTT+TGG | + | chr4_3:65575037-65575056 | Msa0656300:CDS | 35.0% |
| ! | AAACAGTCTTATGATTGGCT+TGG | + | chr4_3:65575240-65575259 | Msa0656300:CDS | 35.0% |
| TCAGGCTTACCCTTATTATA+AGG | - | chr4_3:65575315-65575334 | None:intergenic | 35.0% | |
| ! | TAGAATGGCATAGTTTTCCA+TGG | - | chr4_3:65575348-65575367 | None:intergenic | 35.0% |
| ACTTGAGGCATGTAATAGAA+TGG | - | chr4_3:65575363-65575382 | None:intergenic | 35.0% | |
| TATTACATGCCTCAAGTTCA+GGG | + | chr4_3:65575366-65575385 | Msa0656300:CDS | 35.0% | |
| TCCAGTCAATTTATGTGTAG+AGG | - | chr4_3:65575595-65575614 | None:intergenic | 35.0% | |
| CTATTATGCAGAGAAATTGC+AGG | + | chr4_3:65575657-65575676 | Msa0656300:CDS | 35.0% | |
| !! | AATGAAATGGATTGGGATTG+AGG | - | chr4_3:65574394-65574413 | None:intergenic | 35.0% |
| TCCAATCAAATAGCGAAGAT+GGG | - | chr4_3:65574426-65574445 | None:intergenic | 35.0% | |
| !!! | AAGAACTTTTTCGCTGATTC+CGG | - | chr4_3:65574492-65574511 | None:intergenic | 35.0% |
| CACATTTACTCTCTTGTATG+CGG | + | chr4_3:65574556-65574575 | Msa0656300:intron | 35.0% | |
| !! | AGTTGTGCTTATAGGTTGAT+TGG | + | chr4_3:65574717-65574736 | Msa0656300:intron | 35.0% |
| ! | GGTTGATTGGTTATTCAAAC+AGG | + | chr4_3:65574730-65574749 | Msa0656300:intron | 35.0% |
| ! | AGGGCGTAACTAATTTTGAA+TGG | + | chr4_3:65574750-65574769 | Msa0656300:intron | 35.0% |
| GAATCTAATCAAGCTAGAGT+TGG | - | chr4_3:65574800-65574819 | None:intergenic | 35.0% | |
| ! | TCTAGCTTGATTAGATTCAG+TGG | + | chr4_3:65574802-65574821 | Msa0656300:intron | 35.0% |
| GAAGCAAATGCTGTAAATGA+TGG | - | chr4_3:65574940-65574959 | None:intergenic | 35.0% | |
| ATTTACAGCATTTGCTTCAC+CGG | + | chr4_3:65574942-65574961 | Msa0656300:CDS | 35.0% | |
| AGCACATTTAGTACTGCATT+AGG | + | chr4_3:65575030-65575049 | Msa0656300:CDS | 35.0% | |
| GCACATTTAGTACTGCATTA+GGG | + | chr4_3:65575031-65575050 | Msa0656300:CDS | 35.0% | |
| ! | TTAGTACTGCATTAGGGTTT+TGG | + | chr4_3:65575037-65575056 | Msa0656300:CDS | 35.0% |
| ! | AAACAGTCTTATGATTGGCT+TGG | + | chr4_3:65575240-65575259 | Msa0656300:CDS | 35.0% |
| TCAGGCTTACCCTTATTATA+AGG | - | chr4_3:65575315-65575334 | None:intergenic | 35.0% | |
| ! | TAGAATGGCATAGTTTTCCA+TGG | - | chr4_3:65575348-65575367 | None:intergenic | 35.0% |
| ACTTGAGGCATGTAATAGAA+TGG | - | chr4_3:65575363-65575382 | None:intergenic | 35.0% | |
| TATTACATGCCTCAAGTTCA+GGG | + | chr4_3:65575366-65575385 | Msa0656300:CDS | 35.0% | |
| TCCAGTCAATTTATGTGTAG+AGG | - | chr4_3:65575595-65575614 | None:intergenic | 35.0% | |
| CTATTATGCAGAGAAATTGC+AGG | + | chr4_3:65575657-65575676 | Msa0656300:CDS | 35.0% | |
| !! | AATGGATTGGGATTGAGGTT+GGG | - | chr4_3:65574389-65574408 | None:intergenic | 40.0% |
| !! | AAATGGATTGGGATTGAGGT+TGG | - | chr4_3:65574390-65574409 | None:intergenic | 40.0% |
| ACCCATCTTCGCTATTTGAT+TGG | + | chr4_3:65574422-65574441 | Msa0656300:CDS | 40.0% | |
| CTCCAATCAAATAGCGAAGA+TGG | - | chr4_3:65574427-65574446 | None:intergenic | 40.0% | |
| ATCAGCGAAAAAGTTCTTCC+AGG | + | chr4_3:65574494-65574513 | Msa0656300:CDS | 40.0% | |
| ! | CTGAGAGGGAGTTTTTGATA+GGG | + | chr4_3:65574579-65574598 | Msa0656300:intron | 40.0% |
| ! | TGAGAGGGAGTTTTTGATAG+GGG | + | chr4_3:65574580-65574599 | Msa0656300:intron | 40.0% |
| CCATATGGCTTAATTCTGCT+AGG | - | chr4_3:65574847-65574866 | None:intergenic | 40.0% | |
| CCTAGCAGAATTAAGCCATA+TGG | + | chr4_3:65574844-65574863 | Msa0656300:CDS | 40.0% | |
| GCAAATGCTGTAAATGATGG+AGG | - | chr4_3:65574937-65574956 | None:intergenic | 40.0% | |
| !!! | ACTGCATTAGGGTTTTGGAA+AGG | + | chr4_3:65575042-65575061 | Msa0656300:CDS | 40.0% |
| TACAAAAATTACTGGGAGGG+AGG | + | chr4_3:65575188-65575207 | Msa0656300:CDS | 40.0% | |
| ! | TGTTCTTGGTACCGGAATAT+TGG | + | chr4_3:65575278-65575297 | Msa0656300:CDS | 40.0% |
| CTATTACATGCCTCAAGTTC+AGG | + | chr4_3:65575365-65575384 | Msa0656300:CDS | 40.0% | |
| TCAGGGTCAAATGGAGATTA+TGG | + | chr4_3:65575383-65575402 | Msa0656300:CDS | 40.0% | |
| TTGTATTGTTGGACGCCAAA+TGG | + | chr4_3:65575423-65575442 | Msa0656300:CDS | 40.0% | |
| ! | ATGGGATTCTCAGAGAGTTT+TGG | + | chr4_3:65575496-65575515 | Msa0656300:CDS | 40.0% |
| !! | GATTCTCAGAGAGTTTTGGT+GGG | + | chr4_3:65575500-65575519 | Msa0656300:CDS | 40.0% |
| !! | CAAGGGAAGCTTTGTTGTTA+GGG | + | chr4_3:65575538-65575557 | Msa0656300:CDS | 40.0% |
| GTTGTTAGGGTCTAAAGATC+AGG | + | chr4_3:65575551-65575570 | Msa0656300:CDS | 40.0% | |
| GTCAATTTATGTGTAGAGGC+AGG | - | chr4_3:65575591-65575610 | None:intergenic | 40.0% | |
| GCCTCTACACATAAATTGAC+TGG | + | chr4_3:65575591-65575610 | Msa0656300:CDS | 40.0% | |
| !! | AATGGATTGGGATTGAGGTT+GGG | - | chr4_3:65574389-65574408 | None:intergenic | 40.0% |
| !! | AAATGGATTGGGATTGAGGT+TGG | - | chr4_3:65574390-65574409 | None:intergenic | 40.0% |
| ACCCATCTTCGCTATTTGAT+TGG | + | chr4_3:65574422-65574441 | Msa0656300:CDS | 40.0% | |
| CTCCAATCAAATAGCGAAGA+TGG | - | chr4_3:65574427-65574446 | None:intergenic | 40.0% | |
| ATCAGCGAAAAAGTTCTTCC+AGG | + | chr4_3:65574494-65574513 | Msa0656300:CDS | 40.0% | |
| ! | CTGAGAGGGAGTTTTTGATA+GGG | + | chr4_3:65574579-65574598 | Msa0656300:intron | 40.0% |
| ! | TGAGAGGGAGTTTTTGATAG+GGG | + | chr4_3:65574580-65574599 | Msa0656300:intron | 40.0% |
| CCATATGGCTTAATTCTGCT+AGG | - | chr4_3:65574847-65574866 | None:intergenic | 40.0% | |
| CCTAGCAGAATTAAGCCATA+TGG | + | chr4_3:65574844-65574863 | Msa0656300:CDS | 40.0% | |
| GCAAATGCTGTAAATGATGG+AGG | - | chr4_3:65574937-65574956 | None:intergenic | 40.0% | |
| !!! | ACTGCATTAGGGTTTTGGAA+AGG | + | chr4_3:65575042-65575061 | Msa0656300:CDS | 40.0% |
| TACAAAAATTACTGGGAGGG+AGG | + | chr4_3:65575188-65575207 | Msa0656300:CDS | 40.0% | |
| ! | TGTTCTTGGTACCGGAATAT+TGG | + | chr4_3:65575278-65575297 | Msa0656300:CDS | 40.0% |
| CTATTACATGCCTCAAGTTC+AGG | + | chr4_3:65575365-65575384 | Msa0656300:CDS | 40.0% | |
| TCAGGGTCAAATGGAGATTA+TGG | + | chr4_3:65575383-65575402 | Msa0656300:CDS | 40.0% | |
| TTGTATTGTTGGACGCCAAA+TGG | + | chr4_3:65575423-65575442 | Msa0656300:CDS | 40.0% | |
| ! | ATGGGATTCTCAGAGAGTTT+TGG | + | chr4_3:65575496-65575515 | Msa0656300:CDS | 40.0% |
| !! | GATTCTCAGAGAGTTTTGGT+GGG | + | chr4_3:65575500-65575519 | Msa0656300:CDS | 40.0% |
| !! | CAAGGGAAGCTTTGTTGTTA+GGG | + | chr4_3:65575538-65575557 | Msa0656300:CDS | 40.0% |
| GTTGTTAGGGTCTAAAGATC+AGG | + | chr4_3:65575551-65575570 | Msa0656300:CDS | 40.0% | |
| GTCAATTTATGTGTAGAGGC+AGG | - | chr4_3:65575591-65575610 | None:intergenic | 40.0% | |
| GCCTCTACACATAAATTGAC+TGG | + | chr4_3:65575591-65575610 | Msa0656300:CDS | 40.0% | |
| !! | ATGGATTGGGATTGAGGTTG+GGG | - | chr4_3:65574388-65574407 | None:intergenic | 45.0% |
| !! | GTTTTCCGGCAGGTTGAAAT+CGG | - | chr4_3:65574455-65574474 | None:intergenic | 45.0% |
| !!! | AACTTTTTCGCTGATTCCGG+CGG | - | chr4_3:65574489-65574508 | None:intergenic | 45.0% |
| ! | GCTGAGAGGGAGTTTTTGAT+AGG | + | chr4_3:65574578-65574597 | Msa0656300:intron | 45.0% |
| AACCATTCTTCCGAACGTTG+CGG | - | chr4_3:65574982-65575001 | None:intergenic | 45.0% | |
| AGAATGGTTCGCTCTTCGTA+AGG | + | chr4_3:65574993-65575012 | Msa0656300:CDS | 45.0% | |
| !!! | GCATTAGGGTTTTGGAAAGG+TGG | + | chr4_3:65575045-65575064 | Msa0656300:CDS | 45.0% |
| !! | GAATTGGGGAGTGCTTAATG+AGG | + | chr4_3:65575146-65575165 | Msa0656300:CDS | 45.0% |
| AATAAGGGTAAGCCTGAGAC+AGG | + | chr4_3:65575318-65575337 | Msa0656300:CDS | 45.0% | |
| TCCATTTGACCCTGAACTTG+AGG | - | chr4_3:65575378-65575397 | None:intergenic | 45.0% | |
| !! | GGATTCTCAGAGAGTTTTGG+TGG | + | chr4_3:65575499-65575518 | Msa0656300:CDS | 45.0% |
| TTGGTGGGAAAACGTGATTC+CGG | + | chr4_3:65575515-65575534 | Msa0656300:CDS | 45.0% | |
| AACAACAAAGCTTCCCTTGC+CGG | - | chr4_3:65575537-65575556 | None:intergenic | 45.0% | |
| !! | GCAAGGGAAGCTTTGTTGTT+AGG | + | chr4_3:65575537-65575556 | Msa0656300:CDS | 45.0% |
| !! | ATGGATTGGGATTGAGGTTG+GGG | - | chr4_3:65574388-65574407 | None:intergenic | 45.0% |
| !! | GTTTTCCGGCAGGTTGAAAT+CGG | - | chr4_3:65574455-65574474 | None:intergenic | 45.0% |
| !!! | AACTTTTTCGCTGATTCCGG+CGG | - | chr4_3:65574489-65574508 | None:intergenic | 45.0% |
| ! | GCTGAGAGGGAGTTTTTGAT+AGG | + | chr4_3:65574578-65574597 | Msa0656300:intron | 45.0% |
| AACCATTCTTCCGAACGTTG+CGG | - | chr4_3:65574982-65575001 | None:intergenic | 45.0% | |
| AGAATGGTTCGCTCTTCGTA+AGG | + | chr4_3:65574993-65575012 | Msa0656300:CDS | 45.0% | |
| !!! | GCATTAGGGTTTTGGAAAGG+TGG | + | chr4_3:65575045-65575064 | Msa0656300:CDS | 45.0% |
| !! | GAATTGGGGAGTGCTTAATG+AGG | + | chr4_3:65575146-65575165 | Msa0656300:CDS | 45.0% |
| AATAAGGGTAAGCCTGAGAC+AGG | + | chr4_3:65575318-65575337 | Msa0656300:CDS | 45.0% | |
| TCCATTTGACCCTGAACTTG+AGG | - | chr4_3:65575378-65575397 | None:intergenic | 45.0% | |
| !! | GGATTCTCAGAGAGTTTTGG+TGG | + | chr4_3:65575499-65575518 | Msa0656300:CDS | 45.0% |
| TTGGTGGGAAAACGTGATTC+CGG | + | chr4_3:65575515-65575534 | Msa0656300:CDS | 45.0% | |
| AACAACAAAGCTTCCCTTGC+CGG | - | chr4_3:65575537-65575556 | None:intergenic | 45.0% | |
| !! | GCAAGGGAAGCTTTGTTGTT+AGG | + | chr4_3:65575537-65575556 | Msa0656300:CDS | 45.0% |
| TCTCTTGTATGCGGCTGAGA+GGG | + | chr4_3:65574565-65574584 | Msa0656300:intron | 50.0% | |
| !! | GATGCCTGCGTGTGCTATTT+AGG | + | chr4_3:65574602-65574621 | Msa0656300:intron | 50.0% |
| !! | GTGTGCTATTTAGGTGCCAG+TGG | + | chr4_3:65574611-65574630 | Msa0656300:intron | 50.0% |
| ATTTAGGTGCCAGTGGTGTG+CGG | + | chr4_3:65574618-65574637 | Msa0656300:intron | 50.0% | |
| CGGTTCCCTGCAATCAGTTA+TGG | + | chr4_3:65574638-65574657 | Msa0656300:intron | 50.0% | |
| TTCCGCAACGTTCGGAAGAA+TGG | + | chr4_3:65574977-65574996 | Msa0656300:CDS | 50.0% | |
| !! | TTGGGGAGTGCTTAATGAGG+CGG | + | chr4_3:65575149-65575168 | Msa0656300:CDS | 50.0% |
| TTCCATGGCAAACCTGTCTC+AGG | - | chr4_3:65575333-65575352 | None:intergenic | 50.0% | |
| GCCTCAAGTTCAGGGTCAAA+TGG | + | chr4_3:65575374-65575393 | Msa0656300:CDS | 50.0% | |
| GGAAAACGTGATTCCGGCAA+GGG | + | chr4_3:65575521-65575540 | Msa0656300:CDS | 50.0% | |
| TCTCTTGTATGCGGCTGAGA+GGG | + | chr4_3:65574565-65574584 | Msa0656300:intron | 50.0% | |
| !! | GATGCCTGCGTGTGCTATTT+AGG | + | chr4_3:65574602-65574621 | Msa0656300:intron | 50.0% |
| !! | GTGTGCTATTTAGGTGCCAG+TGG | + | chr4_3:65574611-65574630 | Msa0656300:intron | 50.0% |
| ATTTAGGTGCCAGTGGTGTG+CGG | + | chr4_3:65574618-65574637 | Msa0656300:intron | 50.0% | |
| CGGTTCCCTGCAATCAGTTA+TGG | + | chr4_3:65574638-65574657 | Msa0656300:intron | 50.0% | |
| TTCCGCAACGTTCGGAAGAA+TGG | + | chr4_3:65574977-65574996 | Msa0656300:CDS | 50.0% | |
| !! | TTGGGGAGTGCTTAATGAGG+CGG | + | chr4_3:65575149-65575168 | Msa0656300:CDS | 50.0% |
| TTCCATGGCAAACCTGTCTC+AGG | - | chr4_3:65575333-65575352 | None:intergenic | 50.0% | |
| GCCTCAAGTTCAGGGTCAAA+TGG | + | chr4_3:65575374-65575393 | Msa0656300:CDS | 50.0% | |
| GGAAAACGTGATTCCGGCAA+GGG | + | chr4_3:65575521-65575540 | Msa0656300:CDS | 50.0% | |
| !! | ACGCACCGATTTCAACCTGC+CGG | + | chr4_3:65574447-65574466 | Msa0656300:CDS | 55.0% |
| ! | CGGAAGAGGTTCGCGTTTTC+CGG | - | chr4_3:65574469-65574488 | None:intergenic | 55.0% |
| AAAACGCGAACCTCTTCCGC+CGG | + | chr4_3:65574470-65574489 | Msa0656300:CDS | 55.0% | |
| CTCTCTTGTATGCGGCTGAG+AGG | + | chr4_3:65574564-65574583 | Msa0656300:intron | 55.0% | |
| GGCACCTAAATAGCACACGC+AGG | - | chr4_3:65574609-65574628 | None:intergenic | 55.0% | |
| AGCATTTGCTTCACCGGCAC+CGG | + | chr4_3:65574948-65574967 | Msa0656300:CDS | 55.0% | |
| GAACGTTGCGGAACATCAGC+CGG | - | chr4_3:65574970-65574989 | None:intergenic | 55.0% | |
| GGCTGATGTTCCGCAACGTT+CGG | + | chr4_3:65574969-65574988 | Msa0656300:CDS | 55.0% | |
| CCTGACGGTGTTCTTGGTAC+CGG | + | chr4_3:65575270-65575289 | Msa0656300:CDS | 55.0% | |
| AGCCTGAGACAGGTTTGCCA+TGG | + | chr4_3:65575328-65575347 | Msa0656300:CDS | 55.0% | |
| GGGAAAACGTGATTCCGGCA+AGG | + | chr4_3:65575520-65575539 | Msa0656300:CDS | 55.0% | |
| !! | ACGCACCGATTTCAACCTGC+CGG | + | chr4_3:65574447-65574466 | Msa0656300:CDS | 55.0% |
| ! | CGGAAGAGGTTCGCGTTTTC+CGG | - | chr4_3:65574469-65574488 | None:intergenic | 55.0% |
| AAAACGCGAACCTCTTCCGC+CGG | + | chr4_3:65574470-65574489 | Msa0656300:CDS | 55.0% | |
| CTCTCTTGTATGCGGCTGAG+AGG | + | chr4_3:65574564-65574583 | Msa0656300:intron | 55.0% | |
| GGCACCTAAATAGCACACGC+AGG | - | chr4_3:65574609-65574628 | None:intergenic | 55.0% | |
| AGCATTTGCTTCACCGGCAC+CGG | + | chr4_3:65574948-65574967 | Msa0656300:CDS | 55.0% | |
| GAACGTTGCGGAACATCAGC+CGG | - | chr4_3:65574970-65574989 | None:intergenic | 55.0% | |
| GGCTGATGTTCCGCAACGTT+CGG | + | chr4_3:65574969-65574988 | Msa0656300:CDS | 55.0% | |
| CCTGACGGTGTTCTTGGTAC+CGG | + | chr4_3:65575270-65575289 | Msa0656300:CDS | 55.0% | |
| AGCCTGAGACAGGTTTGCCA+TGG | + | chr4_3:65575328-65575347 | Msa0656300:CDS | 55.0% | |
| GGGAAAACGTGATTCCGGCA+AGG | + | chr4_3:65575520-65575539 | Msa0656300:CDS | 55.0% | |
| ! | AGAGGTTCGCGTTTTCCGGC+AGG | - | chr4_3:65574465-65574484 | None:intergenic | 60.0% |
| !! | TTCGCTGATTCCGGCGGAAG+AGG | - | chr4_3:65574483-65574502 | None:intergenic | 60.0% |
| GTGGTCGTCGTGCTGAGTTG+TGG | + | chr4_3:65575064-65575083 | Msa0656300:CDS | 60.0% | |
| TGGGAGGGAGGTGACTTCGA+TGG | + | chr4_3:65575200-65575219 | Msa0656300:CDS | 60.0% | |
| GGGAGGGAGGTGACTTCGAT+GGG | + | chr4_3:65575201-65575220 | Msa0656300:CDS | 60.0% | |
| CCGGTACCAAGAACACCGTC+AGG | - | chr4_3:65575273-65575292 | None:intergenic | 60.0% | |
| ! | AGAGGTTCGCGTTTTCCGGC+AGG | - | chr4_3:65574465-65574484 | None:intergenic | 60.0% |
| !! | TTCGCTGATTCCGGCGGAAG+AGG | - | chr4_3:65574483-65574502 | None:intergenic | 60.0% |
| GTGGTCGTCGTGCTGAGTTG+TGG | + | chr4_3:65575064-65575083 | Msa0656300:CDS | 60.0% | |
| TGGGAGGGAGGTGACTTCGA+TGG | + | chr4_3:65575200-65575219 | Msa0656300:CDS | 60.0% | |
| GGGAGGGAGGTGACTTCGAT+GGG | + | chr4_3:65575201-65575220 | Msa0656300:CDS | 60.0% | |
| CCGGTACCAAGAACACCGTC+AGG | - | chr4_3:65575273-65575292 | None:intergenic | 60.0% | |
| TGCAGGGAACCGCACACCAC+TGG | - | chr4_3:65574630-65574649 | None:intergenic | 65.0% | |
| TGCGGAACATCAGCCGGTGC+CGG | - | chr4_3:65574964-65574983 | None:intergenic | 65.0% | |
| GCGTCGCCTGACGGTGTTCT+TGG | + | chr4_3:65575264-65575283 | Msa0656300:CDS | 65.0% | |
| TGCAGGGAACCGCACACCAC+TGG | - | chr4_3:65574630-65574649 | None:intergenic | 65.0% | |
| TGCGGAACATCAGCCGGTGC+CGG | - | chr4_3:65574964-65574983 | None:intergenic | 65.0% | |
| GCGTCGCCTGACGGTGTTCT+TGG | + | chr4_3:65575264-65575283 | Msa0656300:CDS | 65.0% | |
| ! | TGGCTTGGCGCGTCGCCTGA+CGG | + | chr4_3:65575255-65575274 | Msa0656300:CDS | 70.0% |
| ! | TGGCTTGGCGCGTCGCCTGA+CGG | + | chr4_3:65575255-65575274 | Msa0656300:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65574313 | 65575698 | 65574313 | ID=Msa0656300;Name=Msa0656300 |
| chr4_3 | mRNA | 65574313 | 65575698 | 65574313 | ID=Msa0656300-mRNA-1;Parent=Msa0656300;Name=Msa0656300-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.66|0|0|3|0|326 |
| chr4_3 | exon | 65574313 | 65574317 | 65574313 | ID=Msa0656300-mRNA-1:exon:18616;Parent=Msa0656300-mRNA-1 |
| chr4_3 | exon | 65574420 | 65574515 | 65574420 | ID=Msa0656300-mRNA-1:exon:18617;Parent=Msa0656300-mRNA-1 |
| chr4_3 | exon | 65574822 | 65575698 | 65574822 | ID=Msa0656300-mRNA-1:exon:18618;Parent=Msa0656300-mRNA-1 |
| chr4_3 | CDS | 65574313 | 65574317 | 65574313 | ID=Msa0656300-mRNA-1:cds;Parent=Msa0656300-mRNA-1 |
| chr4_3 | CDS | 65574420 | 65574515 | 65574420 | ID=Msa0656300-mRNA-1:cds;Parent=Msa0656300-mRNA-1 |
| chr4_3 | CDS | 65574822 | 65575698 | 65574822 | ID=Msa0656300-mRNA-1:cds;Parent=Msa0656300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
