AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657510 MtrunA17_Chr8g0379701 97.257 401 11 0 1 401 1 401 0.0 814
Msa0657510 MtrunA17_Chr2g0284481 40.633 411 186 9 1 383 2 382 5.40e-87 269
Msa0657510 MtrunA17_Chr6g0467041 36.212 359 177 9 6 358 16 328 2.88e-63 206
Msa0657510 MtrunA17_Chr5g0410881 51.630 184 82 1 11 187 31 214 8.86e-61 204
Msa0657510 MtrunA17_Chr8g0378061 52.239 201 84 4 13 207 23 217 1.51e-60 203
Msa0657510 MtrunA17_Chr2g0330821 49.744 195 86 2 1 187 60 250 1.07e-53 182
Msa0657510 MtrunA17_Chr1g0204741 36.082 291 166 4 11 288 39 322 8.55e-53 179
Msa0657510 MtrunA17_Chr4g0039891 44.865 185 94 2 10 187 10 193 1.17e-51 180
Msa0657510 MtrunA17_Chr4g0071051 47.486 179 87 1 11 189 100 271 2.86e-51 177
Msa0657510 MtrunA17_Chr7g0260331 39.130 230 126 3 11 226 48 277 7.08e-49 169
Msa0657510 MtrunA17_Chr3g0135831 41.584 202 114 1 11 208 45 246 8.50e-47 164
Msa0657510 MtrunA17_Chr8g0392001 46.875 192 91 3 12 194 22 211 8.74e-46 161
Msa0657510 MtrunA17_Chr1g0185131 42.541 181 87 3 12 189 32 198 1.68e-43 154
Msa0657510 MtrunA17_Chr6g0485571 38.308 201 116 2 10 206 9 205 3.40e-41 148
Msa0657510 MtrunA17_Chr5g0397881 64.356 101 35 1 4 103 15 115 6.37e-41 148
Msa0657510 MtrunA17_Chr3g0134031 64.646 99 34 1 6 103 17 115 2.15e-39 144
Msa0657510 MtrunA17_Chr5g0441531 66.667 99 32 1 6 103 18 116 6.59e-39 140
Msa0657510 MtrunA17_Chr5g0402291 58.824 102 42 0 8 109 5 106 7.79e-39 140
Msa0657510 MtrunA17_Chr8g0375041 41.139 158 93 0 12 169 9 166 2.13e-36 133
Msa0657510 MtrunA17_Chr1g0203601 40.854 164 70 2 8 144 14 177 2.55e-36 134
Msa0657510 MtrunA17_Chr6g0472421 59.596 99 39 1 6 103 26 124 6.06e-36 134
Msa0657510 MtrunA17_Chr7g0257331 49.123 114 58 0 3 116 13 126 2.12e-34 127
Msa0657510 MtrunA17_Chr4g0047421 37.714 175 91 5 12 176 33 199 5.48e-30 115
Msa0657510 MtrunA17_Chr1g0179321 68.750 64 20 0 8 71 45 108 1.75e-26 102
Msa0657510 MtrunA17_Chr2g0301521 44.286 140 74 2 96 232 1 139 1.87e-25 101
Msa0657510 MtrunA17_Chr2g0330841 39.716 141 76 2 72 207 41 177 6.52e-23 99.8
Msa0657510 MtrunA17_Chr4g0023771 63.492 63 22 1 10 71 13 75 3.12e-22 90.9
Msa0657510 MtrunA17_Chr1g0179311 27.869 122 86 1 72 193 14 133 9.63e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657510 AT4G18880.1 51.095 411 179 11 1 400 1 400 4.13e-115 342
Msa0657510 AT5G45710.3 49.492 394 145 8 1 391 1 343 2.38e-110 328
Msa0657510 AT5G45710.1 49.492 394 145 8 1 391 1 343 2.38e-110 328
Msa0657510 AT4G13980.1 48.500 200 94 2 13 207 24 219 2.34e-59 200
Msa0657510 AT1G32330.2 41.949 236 118 2 6 222 31 266 1.27e-58 198
Msa0657510 AT1G32330.1 41.949 236 118 2 6 222 31 266 1.57e-58 198
Msa0657510 AT5G45710.4 40.940 298 123 8 96 391 1 247 1.82e-55 183
Msa0657510 AT5G45710.2 40.940 298 123 8 96 391 1 247 1.82e-55 183
Msa0657510 AT5G16820.1 42.991 214 109 2 8 208 23 236 1.49e-54 187
Msa0657510 AT5G16820.2 42.991 214 109 2 8 208 23 236 1.49e-54 187
Msa0657510 AT4G17750.1 45.026 191 91 1 11 187 51 241 7.87e-54 186
Msa0657510 AT3G22830.1 41.256 223 117 2 8 216 57 279 1.97e-53 183
Msa0657510 AT3G02990.1 47.283 184 93 1 8 187 19 202 3.95e-53 184
Msa0657510 AT2G26150.1 41.262 206 113 1 11 208 43 248 2.34e-50 173
Msa0657510 AT2G26150.4 41.262 206 113 1 11 208 43 248 2.34e-50 173
Msa0657510 AT5G03720.2 45.810 179 89 2 10 185 53 226 7.62e-49 171
Msa0657510 AT5G03720.1 45.810 179 89 2 10 185 53 226 7.62e-49 171
Msa0657510 AT5G43840.1 43.000 200 90 3 11 208 16 193 1.39e-46 161
Msa0657510 AT1G67970.1 43.386 189 100 3 10 194 17 202 1.75e-45 161
Msa0657510 AT3G51910.1 45.652 184 85 3 11 194 28 196 4.40e-44 154
Msa0657510 AT5G54070.1 39.698 199 110 2 10 208 69 257 3.49e-41 148
Msa0657510 AT3G24520.1 39.247 186 86 4 10 195 15 173 1.73e-40 147
Msa0657510 AT1G46264.1 63.000 100 36 1 5 103 26 125 1.82e-39 144
Msa0657510 AT3G63350.1 38.725 204 111 3 1 204 21 210 1.94e-39 142
Msa0657510 AT5G62020.1 51.181 127 57 2 3 128 13 135 2.12e-38 140
Msa0657510 AT4G36990.1 63.265 98 35 1 9 105 10 107 9.25e-38 138
Msa0657510 AT4G11660.1 59.596 99 39 1 6 103 52 150 1.68e-36 137
Msa0657510 AT2G41690.1 58.491 106 43 1 11 115 39 144 2.23e-36 133
Msa0657510 AT4G18870.1 54.639 97 39 2 5 99 6 99 6.37e-27 109
Msa0657510 AT4G18870.1 52.174 92 44 0 8 99 142 233 2.08e-26 107
Msa0657510 AT1G77570.1 43.333 90 48 2 13 99 27 116 1.46e-17 79.3
Msa0657510 AT2G26150.3 33.621 116 77 0 72 187 49 164 1.15e-16 80.1
Msa0657510 AT2G26150.2 33.621 116 77 0 72 187 49 164 1.15e-16 80.1
Msa0657510 AT4G19630.1 38.947 95 55 1 8 99 7 101 2.16e-15 72.8

Find 116 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTATTGATTGATTATC+AGG 0.155162 4_3:+67196148 Msa0657510:five_prime_UTR
TTGAGGCATCCGTGGCATTT+TGG 0.204494 4_3:+67197275 Msa0657510:CDS
ATTGGGAATTGATTAGGTTT+TGG 0.243435 4_3:+67196372 Msa0657510:five_prime_UTR
TCAACGTTCATGTCAATTTC+AGG 0.245219 4_3:-67197433 None:intergenic
TAACGTTGTTGGATCTTAAA+AGG 0.263526 4_3:-67195922 None:intergenic
AGAATATATATAAGGTGATT+TGG 0.271218 4_3:+67196271 Msa0657510:five_prime_UTR
ATATGTATGTGCAGGGATTT+AGG 0.272285 4_3:+67196726 Msa0657510:intron
AGCAAAACCCTTGCGAATTC+CGG 0.278319 4_3:-67196540 None:intergenic
TAGCTATTGATTATTTCTTC+TGG 0.284577 4_3:+67197733 Msa0657510:three_prime_UTR
GAATATATATAAGGTGATTT+GGG 0.287886 4_3:+67196272 Msa0657510:five_prime_UTR
CACTCATTCAAACATGGATT+TGG 0.293073 4_3:+67197336 Msa0657510:CDS
CTGGGGTTAATGATGTATTC+TGG 0.294292 4_3:+67197524 Msa0657510:CDS
GACTGTTCTTCTTTGTGATT+AGG 0.296163 4_3:+67196113 Msa0657510:five_prime_UTR
ATTGGGGATTGATTAGGTTC+TGG 0.305724 4_3:+67196314 Msa0657510:five_prime_UTR
TTTCTTCCAGAATATATATA+AGG 0.307353 4_3:+67196263 Msa0657510:five_prime_UTR
CTAACATGCCCCATCTGTTC+TGG 0.312124 4_3:-67197691 None:intergenic
TTGGGGATTGATTAGGTTCT+GGG 0.319125 4_3:+67196315 Msa0657510:five_prime_UTR
TCTTCTTTGTGATTAGGTTA+TGG 0.325896 4_3:+67196119 Msa0657510:five_prime_UTR
ATACTTTGATTAGAGGGTTA+TGG 0.332997 4_3:+67196091 Msa0657510:five_prime_UTR
CTTGGTTATACTTTGATTAG+AGG 0.334009 4_3:+67196084 Msa0657510:five_prime_UTR
TTGTCAATTGGGAATTGATT+AGG 0.337277 4_3:+67196366 Msa0657510:five_prime_UTR
CGAAGAGATACCAGCATGAT+TGG 0.339945 4_3:+67196960 Msa0657510:CDS
TGCAATTTCCAAGGAAAACT+TGG 0.343304 4_3:-67196014 None:intergenic
CTAGTGATCATGGTAGATTT+TGG 0.344391 4_3:+67197641 Msa0657510:CDS
TGAGGGTGAGATTTGTCAAT+TGG 0.347645 4_3:+67196354 Msa0657510:five_prime_UTR
AGAATCACCACTGCAGCAAC+TGG 0.356379 4_3:+67197505 Msa0657510:CDS
AAGAGATTTACAGCAATCAT+AGG 0.368528 4_3:-67197085 None:intergenic
GACGTTAAACACCGAGAGAT+TGG 0.369357 4_3:+67197246 Msa0657510:CDS
TGCCTTTCAGACTCCGTTAG+AGG 0.391700 4_3:-67196878 None:intergenic
TAGATACATATTTCATACTT+TGG 0.395073 4_3:+67197814 Msa0657510:three_prime_UTR
GGAGAGAAAACGAAGGTTGC+CGG 0.399062 4_3:+67197126 Msa0657510:CDS
ATTCAGCTGCCTGATAAAAC+TGG 0.407135 4_3:-67196592 None:intergenic
AAAGGTTAAAGGGTTGTGTT+TGG 0.409541 4_3:-67195848 None:intergenic
CTCTCCATGGCTTCTGCCAG+TGG 0.418903 4_3:-67197109 None:intergenic
TCATAAGTCTTTGCCAGAAA+AGG 0.419332 4_3:-67196441 None:intergenic
AACAACGGCGCTAACGTTGT+TGG 0.424186 4_3:-67195933 None:intergenic
AAATCACCTTATATATATTC+TGG 0.426534 4_3:-67196269 None:intergenic
GCCTCAAGAGCAGCAGCAGC+TGG 0.427478 4_3:-67197457 None:intergenic
TCTGGCAAAGACTTATGAAA+TGG 0.438206 4_3:+67196446 Msa0657510:CDS
CAATCATGTGTAATAAAACT+TGG 0.442618 4_3:+67197769 Msa0657510:three_prime_UTR
TGAAATAGAGAAGCTGAAAC+AGG 0.448407 4_3:+67196913 Msa0657510:CDS
GATGCACTCCACGAAACAAT+AGG 0.454683 4_3:-67196489 None:intergenic
TGGGGTTAATGATGTATTCT+GGG 0.456218 4_3:+67197525 Msa0657510:CDS
GAGGGTGAGATTTGTCAATT+GGG 0.461697 4_3:+67196355 Msa0657510:five_prime_UTR
ACCAGCTGCTGCTGCTCTTG+AGG 0.466489 4_3:+67197456 Msa0657510:CDS
CAAAGATTGTGTCACTCCAT+TGG 0.472243 4_3:+67197853 Msa0657510:three_prime_UTR
GCCTTTCAGACTCCGTTAGA+GGG 0.473627 4_3:-67196877 None:intergenic
TTGGTTATACTTTGATTAGA+GGG 0.473777 4_3:+67196085 Msa0657510:five_prime_UTR
ATGTCAATTTCAGGTGACTT+AGG 0.477806 4_3:-67197424 None:intergenic
TGCAGAGAATGACTATGAAC+GGG 0.482637 4_3:-67196836 None:intergenic
TCCTGGTGCATCGGAAGCAC+AGG 0.486616 4_3:+67197567 Msa0657510:CDS
GAGACTCTTGCACATGAAGT+TGG 0.497289 4_3:+67197298 Msa0657510:CDS
CATATTTCATACTTTGGCTG+AGG 0.500964 4_3:+67197820 Msa0657510:three_prime_UTR
CGTTCACACTCATTCAAACA+TGG 0.502442 4_3:+67197330 Msa0657510:CDS
GAAGGAAAACCTAGTGATCA+TGG 0.502730 4_3:+67197631 Msa0657510:CDS
TTGGCAAATTCCCACTGCTC+CGG 0.502904 4_3:-67196758 None:intergenic
TGATTATTGATTGATTATCA+GGG 0.504572 4_3:+67196149 Msa0657510:five_prime_UTR
GGGATTTAGGAAAGTTGATC+CGG 0.507404 4_3:+67196739 Msa0657510:intron
CTTGCCACTGGCAGAAGCCA+TGG 0.509175 4_3:+67197105 Msa0657510:CDS
TTTCGTTGTGTGGAATCCTC+CGG 0.511600 4_3:+67196521 Msa0657510:CDS
TCCTGTGCTTCCGATGCACC+AGG 0.511617 4_3:-67197568 None:intergenic
GAAGAGATACCAGCATGATT+GGG 0.512133 4_3:+67196961 Msa0657510:CDS
TGCTGTAAATCTCTTGCCAC+TGG 0.515181 4_3:+67197093 Msa0657510:CDS
GGAAAGTTGATCCGGAGCAG+TGG 0.515618 4_3:+67196747 Msa0657510:CDS
CAGTTCTTGACAGAGGATCC+TGG 0.516203 4_3:+67197550 Msa0657510:CDS
AGACTTCTGTAGCTTTGCCC+AGG 0.516910 4_3:+67197197 Msa0657510:CDS
AAACAATCATCCAGAACAGA+TGG 0.518388 4_3:+67197681 Msa0657510:CDS
ATACATATTACATCCTCCAT+TGG 0.519440 4_3:+67197918 Msa0657510:three_prime_UTR
CCTCGGATCCTATTGTTTCG+TGG 0.527360 4_3:+67196481 Msa0657510:CDS
TTATTGTGCTTAAAGAATCT+CGG 0.532647 4_3:-67196564 None:intergenic
CGAACAAAAGTTTCGTTGTG+TGG 0.533195 4_3:+67196511 Msa0657510:CDS
GCATTGTTCGAAAGATCAGT+TGG 0.538254 4_3:+67197003 Msa0657510:CDS
AACGTAAGTTGCAATTTCCA+AGG 0.545600 4_3:-67196023 None:intergenic
GTCAAAGTAGAGTTATCCTC+TGG 0.546841 4_3:-67197226 None:intergenic
AGCTAGTGTTGAAGATGCTA+TGG 0.547413 4_3:+67197174 Msa0657510:CDS
CTCAAGTTGATCCAATCTCT+CGG 0.553126 4_3:-67197257 None:intergenic
GACAGAGGATCCTGGTGCAT+CGG 0.553354 4_3:+67197558 Msa0657510:CDS
ATTAACCCCAGTTGCTGCAG+TGG 0.553513 4_3:-67197512 None:intergenic
CCCCTCTAACGGAGTCTGAA+AGG 0.554429 4_3:+67196876 Msa0657510:CDS
ATGCAGAGAATGACTATGAA+CGG 0.560960 4_3:-67196837 None:intergenic
AATACGTTGACCTTCTGCTC+AGG 0.562482 4_3:+67195745 Msa0657510:five_prime_UTR
GCTGCAGTGGTGATTCTCGC+AGG 0.569378 4_3:-67197499 None:intergenic
TAAGTCTTTGCCAGAAAAGG+AGG 0.570699 4_3:-67196438 None:intergenic
CAAAATCTACCATGATCACT+AGG 0.571873 4_3:-67197640 None:intergenic
AACAATCATCCAGAACAGAT+GGG 0.574845 4_3:+67197682 Msa0657510:CDS
GGAATCCTCCGGAATTCGCA+AGG 0.575730 4_3:+67196532 Msa0657510:CDS
TTAAAGCAACCACTTCTCGC+CGG 0.577237 4_3:-67197145 None:intergenic
GAAAGTTGATCCGGAGCAGT+GGG 0.578322 4_3:+67196748 Msa0657510:CDS
CATGCCTTTCCCAATCATGC+TGG 0.579073 4_3:-67196970 None:intergenic
GAATCACCACTGCAGCAACT+GGG 0.580374 4_3:+67197506 Msa0657510:CDS
CGAAGGTTGCCGGCGAGAAG+TGG 0.586677 4_3:+67197136 Msa0657510:CDS
AATATATATAAGGTGATTTG+GGG 0.597900 4_3:+67196273 Msa0657510:five_prime_UTR
CCTTTCAGACTCCGTTAGAG+GGG 0.598591 4_3:-67196876 None:intergenic
TGAATATTCTTCATCAGATG+CGG 0.602613 4_3:-67196803 None:intergenic
GACTTCTGTAGCTTTGCCCA+GGG 0.603526 4_3:+67197198 Msa0657510:CDS
GATACCAGCATGATTGGGAA+AGG 0.606022 4_3:+67196966 Msa0657510:CDS
AAAACCCTTGCGAATTCCGG+AGG 0.607238 4_3:-67196537 None:intergenic
TCAAGCACAAGCCCCTCTAA+CGG 0.613167 4_3:+67196865 Msa0657510:CDS
GGCAAAGACTTATGAAATGG+TGG 0.613237 4_3:+67196449 Msa0657510:CDS
GGATCAACTTGAGGCATCCG+TGG 0.615719 4_3:+67197267 Msa0657510:CDS
CGAGAGATTGGATCAACTTG+AGG 0.627773 4_3:+67197258 Msa0657510:CDS
AATGGTGGATGATCGATCCT+CGG 0.628991 4_3:+67196464 Msa0657510:CDS
GAATCCTCCGGAATTCGCAA+GGG 0.629052 4_3:+67196533 Msa0657510:CDS
TGATGAAGAATATTCATAGA+CGG 0.629516 4_3:+67196810 Msa0657510:CDS
CTGCAATGCTTCAGAAACAG+AGG 0.634333 4_3:-67197059 None:intergenic
ATATCTTGTCAGCAACTAGA+CGG 0.636770 4_3:+67197391 Msa0657510:CDS
ACAATCATCCAGAACAGATG+GGG 0.647372 4_3:+67197683 Msa0657510:CDS
CTGGGAACAGTTCTTGACAG+AGG 0.655854 4_3:+67197543 Msa0657510:CDS
AAGAGTCTCCCAAAATGCCA+CGG 0.657362 4_3:-67197284 None:intergenic
AATCACCACTGCAGCAACTG+GGG 0.658502 4_3:+67197507 Msa0657510:CDS
GGATAGAGAACAACTCCTCG+TGG 0.661247 4_3:+67196934 Msa0657510:CDS
CCACGAAACAATAGGATCCG+AGG 0.666703 4_3:-67196481 None:intergenic
ATTACATATGAAGAAAACAA+CGG 0.686562 4_3:-67195948 None:intergenic
GGTATCTCTTCGTCTCCACG+AGG 0.715796 4_3:-67196949 None:intergenic
TTTGCCCAGGGAAAATCCAG+AGG 0.715905 4_3:+67197210 Msa0657510:CDS
AAGCCATGGAGAGAAAACGA+AGG 0.761326 4_3:+67197119 Msa0657510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTATTTTGAAAAAT+TGG + chr4_3:67196296-67196315 Msa0657510:five_prime_UTR 10.0%
!!! TTGTTTTATTTTGAAAAATT+GGG + chr4_3:67196297-67196316 Msa0657510:five_prime_UTR 10.0%
!!! TTTGTTTTATTTTGAAAAAT+TGG + chr4_3:67196296-67196315 Msa0657510:five_prime_UTR 10.0%
!!! TTGTTTTATTTTGAAAAATT+GGG + chr4_3:67196297-67196316 Msa0657510:five_prime_UTR 10.0%
!!! TGTTTTATTTTGAAAAATTG+GGG + chr4_3:67196298-67196317 Msa0657510:five_prime_UTR 15.0%
!!! TTTATTTTATTTACTGATTC+TGG + chr4_3:67196675-67196694 Msa0657510:intron 15.0%
!!! TGTTTTATTTTGAAAAATTG+GGG + chr4_3:67196298-67196317 Msa0657510:five_prime_UTR 15.0%
!!! TTTATTTTATTTACTGATTC+TGG + chr4_3:67196675-67196694 Msa0657510:intron 15.0%
!!! AAATTGAATTTTGAAGTGAA+AGG - chr4_3:67195869-67195888 None:intergenic 20.0%
!! ATTACATATGAAGAAAACAA+CGG - chr4_3:67195951-67195970 None:intergenic 20.0%
!!! TTCTTTTTGATGATTTTTCT+TGG + chr4_3:67196066-67196085 Msa0657510:five_prime_UTR 20.0%
!!! ATGATTATTGATTGATTATC+AGG + chr4_3:67196148-67196167 Msa0657510:five_prime_UTR 20.0%
!!! TGATTATTGATTGATTATCA+GGG + chr4_3:67196149-67196168 Msa0657510:five_prime_UTR 20.0%
!!! ATTTTGTCTAGGTTATATTT+GGG + chr4_3:67196185-67196204 Msa0657510:five_prime_UTR 20.0%
!!! TTTGCTTTGTTTTTAATTTG+TGG + chr4_3:67196234-67196253 Msa0657510:five_prime_UTR 20.0%
!! TTTCTTCCAGAATATATATA+AGG + chr4_3:67196263-67196282 Msa0657510:five_prime_UTR 20.0%
!! AAATCACCTTATATATATTC+TGG - chr4_3:67196272-67196291 None:intergenic 20.0%
!! AGAATATATATAAGGTGATT+TGG + chr4_3:67196271-67196290 Msa0657510:five_prime_UTR 20.0%
!! GAATATATATAAGGTGATTT+GGG + chr4_3:67196272-67196291 Msa0657510:five_prime_UTR 20.0%
!! AATATATATAAGGTGATTTG+GGG + chr4_3:67196273-67196292 Msa0657510:five_prime_UTR 20.0%
!! TAGATACATATTTCATACTT+TGG + chr4_3:67197814-67197833 Msa0657510:three_prime_UTR 20.0%
!!! AAATTGAATTTTGAAGTGAA+AGG - chr4_3:67195869-67195888 None:intergenic 20.0%
!! ATTACATATGAAGAAAACAA+CGG - chr4_3:67195951-67195970 None:intergenic 20.0%
!!! TTCTTTTTGATGATTTTTCT+TGG + chr4_3:67196066-67196085 Msa0657510:five_prime_UTR 20.0%
!!! ATGATTATTGATTGATTATC+AGG + chr4_3:67196148-67196167 Msa0657510:five_prime_UTR 20.0%
!!! TGATTATTGATTGATTATCA+GGG + chr4_3:67196149-67196168 Msa0657510:five_prime_UTR 20.0%
!!! ATTTTGTCTAGGTTATATTT+GGG + chr4_3:67196185-67196204 Msa0657510:five_prime_UTR 20.0%
!!! TTTGCTTTGTTTTTAATTTG+TGG + chr4_3:67196234-67196253 Msa0657510:five_prime_UTR 20.0%
!! TTTCTTCCAGAATATATATA+AGG + chr4_3:67196263-67196282 Msa0657510:five_prime_UTR 20.0%
!! AAATCACCTTATATATATTC+TGG - chr4_3:67196272-67196291 None:intergenic 20.0%
!! AGAATATATATAAGGTGATT+TGG + chr4_3:67196271-67196290 Msa0657510:five_prime_UTR 20.0%
!! GAATATATATAAGGTGATTT+GGG + chr4_3:67196272-67196291 Msa0657510:five_prime_UTR 20.0%
!! AATATATATAAGGTGATTTG+GGG + chr4_3:67196273-67196292 Msa0657510:five_prime_UTR 20.0%
!! TAGATACATATTTCATACTT+TGG + chr4_3:67197814-67197833 Msa0657510:three_prime_UTR 20.0%
!!! TTTTGAAGTGAAAGGTTAAA+GGG - chr4_3:67195861-67195880 None:intergenic 25.0%
!!! ATTTTGAAGTGAAAGGTTAA+AGG - chr4_3:67195862-67195881 None:intergenic 25.0%
! TTGGTTATACTTTGATTAGA+GGG + chr4_3:67196085-67196104 Msa0657510:five_prime_UTR 25.0%
!!! TGATTATCAGGGTTTTTTTT+TGG + chr4_3:67196160-67196179 Msa0657510:five_prime_UTR 25.0%
!!! TTTTTTTGGAGATTTTGTCT+AGG + chr4_3:67196174-67196193 Msa0657510:five_prime_UTR 25.0%
!! GATTTTGTCTAGGTTATATT+TGG + chr4_3:67196184-67196203 Msa0657510:five_prime_UTR 25.0%
!!! GTTTTGAATTTAGGTTTTGA+GGG + chr4_3:67196337-67196356 Msa0657510:five_prime_UTR 25.0%
! TTATTGTGCTTAAAGAATCT+CGG - chr4_3:67196567-67196586 None:intergenic 25.0%
! TATGTAAGCAAATTTGATGT+CGG + chr4_3:67196618-67196637 Msa0657510:intron 25.0%
!!! TATTTACTGATTCTGGTTTT+TGG + chr4_3:67196682-67196701 Msa0657510:intron 25.0%
!! TTGCCAATGATGATTTTATA+AGG + chr4_3:67196774-67196793 Msa0657510:CDS 25.0%
!! TGCCAATGATGATTTTATAA+GGG + chr4_3:67196775-67196794 Msa0657510:CDS 25.0%
! TGATGAAGAATATTCATAGA+CGG + chr4_3:67196810-67196829 Msa0657510:CDS 25.0%
! AATAGTAGCAGAAAAAATGA+AGG + chr4_3:67197613-67197632 Msa0657510:CDS 25.0%
!! TAGCTATTGATTATTTCTTC+TGG + chr4_3:67197733-67197752 Msa0657510:three_prime_UTR 25.0%
!! TTTTATTACACATGATTGTG+GGG - chr4_3:67197767-67197786 None:intergenic 25.0%
!!! GTTTTATTACACATGATTGT+GGG - chr4_3:67197768-67197787 None:intergenic 25.0%
!!! AGTTTTATTACACATGATTG+TGG - chr4_3:67197769-67197788 None:intergenic 25.0%
! CAATCATGTGTAATAAAACT+TGG + chr4_3:67197769-67197788 Msa0657510:three_prime_UTR 25.0%
!!! TTTTGAAGTGAAAGGTTAAA+GGG - chr4_3:67195861-67195880 None:intergenic 25.0%
!!! ATTTTGAAGTGAAAGGTTAA+AGG - chr4_3:67195862-67195881 None:intergenic 25.0%
! TTGGTTATACTTTGATTAGA+GGG + chr4_3:67196085-67196104 Msa0657510:five_prime_UTR 25.0%
!!! TGATTATCAGGGTTTTTTTT+TGG + chr4_3:67196160-67196179 Msa0657510:five_prime_UTR 25.0%
!!! TTTTTTTGGAGATTTTGTCT+AGG + chr4_3:67196174-67196193 Msa0657510:five_prime_UTR 25.0%
!! GATTTTGTCTAGGTTATATT+TGG + chr4_3:67196184-67196203 Msa0657510:five_prime_UTR 25.0%
!!! GTTTTGAATTTAGGTTTTGA+GGG + chr4_3:67196337-67196356 Msa0657510:five_prime_UTR 25.0%
! TTATTGTGCTTAAAGAATCT+CGG - chr4_3:67196567-67196586 None:intergenic 25.0%
! TATGTAAGCAAATTTGATGT+CGG + chr4_3:67196618-67196637 Msa0657510:intron 25.0%
!!! TATTTACTGATTCTGGTTTT+TGG + chr4_3:67196682-67196701 Msa0657510:intron 25.0%
!! TTGCCAATGATGATTTTATA+AGG + chr4_3:67196774-67196793 Msa0657510:CDS 25.0%
!! TGCCAATGATGATTTTATAA+GGG + chr4_3:67196775-67196794 Msa0657510:CDS 25.0%
! TGATGAAGAATATTCATAGA+CGG + chr4_3:67196810-67196829 Msa0657510:CDS 25.0%
! AATAGTAGCAGAAAAAATGA+AGG + chr4_3:67197613-67197632 Msa0657510:CDS 25.0%
!! TAGCTATTGATTATTTCTTC+TGG + chr4_3:67197733-67197752 Msa0657510:three_prime_UTR 25.0%
!! TTTTATTACACATGATTGTG+GGG - chr4_3:67197767-67197786 None:intergenic 25.0%
!!! GTTTTATTACACATGATTGT+GGG - chr4_3:67197768-67197787 None:intergenic 25.0%
!!! AGTTTTATTACACATGATTG+TGG - chr4_3:67197769-67197788 None:intergenic 25.0%
! CAATCATGTGTAATAAAACT+TGG + chr4_3:67197769-67197788 Msa0657510:three_prime_UTR 25.0%
! TAATATTTTTCCTGAGCAGA+AGG - chr4_3:67195758-67195777 None:intergenic 30.0%
TAACGTTGTTGGATCTTAAA+AGG - chr4_3:67195925-67195944 None:intergenic 30.0%
AAAATCATCAAAAAGAAGCG+TGG - chr4_3:67196063-67196082 None:intergenic 30.0%
CTTGGTTATACTTTGATTAG+AGG + chr4_3:67196084-67196103 Msa0657510:five_prime_UTR 30.0%
ATACTTTGATTAGAGGGTTA+TGG + chr4_3:67196091-67196110 Msa0657510:five_prime_UTR 30.0%
TCTTCTTTGTGATTAGGTTA+TGG + chr4_3:67196119-67196138 Msa0657510:five_prime_UTR 30.0%
TGAAAAATTGGGGATTGATT+AGG + chr4_3:67196308-67196327 Msa0657510:five_prime_UTR 30.0%
!!! GGTTTTGAATTTAGGTTTTG+AGG + chr4_3:67196336-67196355 Msa0657510:five_prime_UTR 30.0%
TTGTCAATTGGGAATTGATT+AGG + chr4_3:67196366-67196385 Msa0657510:five_prime_UTR 30.0%
! ATTGGGAATTGATTAGGTTT+TGG + chr4_3:67196372-67196391 Msa0657510:five_prime_UTR 30.0%
! TTGGGAATTGATTAGGTTTT+GGG + chr4_3:67196373-67196392 Msa0657510:five_prime_UTR 30.0%
!!! TTTTGGGTTTTTTTGAGTGA+TGG + chr4_3:67196389-67196408 Msa0657510:exon 30.0%
!! ATAACTTCTCCAGTTTTATC+AGG + chr4_3:67196583-67196602 Msa0657510:CDS 30.0%
TTCATAGTATATGTATGTGC+AGG + chr4_3:67196718-67196737 Msa0657510:intron 30.0%
TCATAGTATATGTATGTGCA+GGG + chr4_3:67196719-67196738 Msa0657510:intron 30.0%
! GCCAATGATGATTTTATAAG+GGG + chr4_3:67196776-67196795 Msa0657510:CDS 30.0%
! CCAATGATGATTTTATAAGG+GGG + chr4_3:67196777-67196796 Msa0657510:CDS 30.0%
TGAATATTCTTCATCAGATG+CGG - chr4_3:67196806-67196825 None:intergenic 30.0%
GAAAGATCAGTTGGAAAAAT+TGG + chr4_3:67197012-67197031 Msa0657510:CDS 30.0%
AAGAGATTTACAGCAATCAT+AGG - chr4_3:67197088-67197107 None:intergenic 30.0%
ATACATATTACATCCTCCAT+TGG + chr4_3:67197918-67197937 Msa0657510:three_prime_UTR 30.0%
! TAATATTTTTCCTGAGCAGA+AGG - chr4_3:67195758-67195777 None:intergenic 30.0%
TAACGTTGTTGGATCTTAAA+AGG - chr4_3:67195925-67195944 None:intergenic 30.0%
AAAATCATCAAAAAGAAGCG+TGG - chr4_3:67196063-67196082 None:intergenic 30.0%
CTTGGTTATACTTTGATTAG+AGG + chr4_3:67196084-67196103 Msa0657510:five_prime_UTR 30.0%
ATACTTTGATTAGAGGGTTA+TGG + chr4_3:67196091-67196110 Msa0657510:five_prime_UTR 30.0%
TCTTCTTTGTGATTAGGTTA+TGG + chr4_3:67196119-67196138 Msa0657510:five_prime_UTR 30.0%
TGAAAAATTGGGGATTGATT+AGG + chr4_3:67196308-67196327 Msa0657510:five_prime_UTR 30.0%
!!! GGTTTTGAATTTAGGTTTTG+AGG + chr4_3:67196336-67196355 Msa0657510:five_prime_UTR 30.0%
TTGTCAATTGGGAATTGATT+AGG + chr4_3:67196366-67196385 Msa0657510:five_prime_UTR 30.0%
! ATTGGGAATTGATTAGGTTT+TGG + chr4_3:67196372-67196391 Msa0657510:five_prime_UTR 30.0%
! TTGGGAATTGATTAGGTTTT+GGG + chr4_3:67196373-67196392 Msa0657510:five_prime_UTR 30.0%
!!! TTTTGGGTTTTTTTGAGTGA+TGG + chr4_3:67196389-67196408 Msa0657510:exon 30.0%
!! ATAACTTCTCCAGTTTTATC+AGG + chr4_3:67196583-67196602 Msa0657510:CDS 30.0%
TTCATAGTATATGTATGTGC+AGG + chr4_3:67196718-67196737 Msa0657510:intron 30.0%
TCATAGTATATGTATGTGCA+GGG + chr4_3:67196719-67196738 Msa0657510:intron 30.0%
! GCCAATGATGATTTTATAAG+GGG + chr4_3:67196776-67196795 Msa0657510:CDS 30.0%
! CCAATGATGATTTTATAAGG+GGG + chr4_3:67196777-67196796 Msa0657510:CDS 30.0%
TGAATATTCTTCATCAGATG+CGG - chr4_3:67196806-67196825 None:intergenic 30.0%
GAAAGATCAGTTGGAAAAAT+TGG + chr4_3:67197012-67197031 Msa0657510:CDS 30.0%
AAGAGATTTACAGCAATCAT+AGG - chr4_3:67197088-67197107 None:intergenic 30.0%
ATACATATTACATCCTCCAT+TGG + chr4_3:67197918-67197937 Msa0657510:three_prime_UTR 30.0%
TTATGCAGAAGAGAAAAAGC+TGG + chr4_3:67195775-67195794 Msa0657510:five_prime_UTR 35.0%
AAAGGTTAAAGGGTTGTGTT+TGG - chr4_3:67195851-67195870 None:intergenic 35.0%
! CTTTTTGTCCAAGTTTTCCT+TGG + chr4_3:67196006-67196025 Msa0657510:five_prime_UTR 35.0%
TGCAATTTCCAAGGAAAACT+TGG - chr4_3:67196017-67196036 None:intergenic 35.0%
AACGTAAGTTGCAATTTCCA+AGG - chr4_3:67196026-67196045 None:intergenic 35.0%
GACTGTTCTTCTTTGTGATT+AGG + chr4_3:67196113-67196132 Msa0657510:five_prime_UTR 35.0%
!!! AGGTTCTGGGTTTTGAATTT+AGG + chr4_3:67196328-67196347 Msa0657510:five_prime_UTR 35.0%
TCATAAGTCTTTGCCAGAAA+AGG - chr4_3:67196444-67196463 None:intergenic 35.0%
TCTGGCAAAGACTTATGAAA+TGG + chr4_3:67196446-67196465 Msa0657510:CDS 35.0%
ATATGTATGTGCAGGGATTT+AGG + chr4_3:67196726-67196745 Msa0657510:intron 35.0%
CCCCCTTATAAAATCATCAT+TGG - chr4_3:67196780-67196799 None:intergenic 35.0%
ATGCAGAGAATGACTATGAA+CGG - chr4_3:67196840-67196859 None:intergenic 35.0%
TGAAATAGAGAAGCTGAAAC+AGG + chr4_3:67196913-67196932 Msa0657510:CDS 35.0%
CACTCATTCAAACATGGATT+TGG + chr4_3:67197336-67197355 Msa0657510:CDS 35.0%
ATATCTTGTCAGCAACTAGA+CGG + chr4_3:67197391-67197410 Msa0657510:CDS 35.0%
! ATGTCAATTTCAGGTGACTT+AGG - chr4_3:67197427-67197446 None:intergenic 35.0%
TCAACGTTCATGTCAATTTC+AGG - chr4_3:67197436-67197455 None:intergenic 35.0%
TGGGGTTAATGATGTATTCT+GGG + chr4_3:67197525-67197544 Msa0657510:CDS 35.0%
CAAAATCTACCATGATCACT+AGG - chr4_3:67197643-67197662 None:intergenic 35.0%
! CTAGTGATCATGGTAGATTT+TGG + chr4_3:67197641-67197660 Msa0657510:CDS 35.0%
AAACAATCATCCAGAACAGA+TGG + chr4_3:67197681-67197700 Msa0657510:CDS 35.0%
AACAATCATCCAGAACAGAT+GGG + chr4_3:67197682-67197701 Msa0657510:CDS 35.0%
CATATTTCATACTTTGGCTG+AGG + chr4_3:67197820-67197839 Msa0657510:three_prime_UTR 35.0%
CTATTGCAGACAAAAACCAA+TGG - chr4_3:67197872-67197891 None:intergenic 35.0%
TTATGCAGAAGAGAAAAAGC+TGG + chr4_3:67195775-67195794 Msa0657510:five_prime_UTR 35.0%
AAAGGTTAAAGGGTTGTGTT+TGG - chr4_3:67195851-67195870 None:intergenic 35.0%
! CTTTTTGTCCAAGTTTTCCT+TGG + chr4_3:67196006-67196025 Msa0657510:five_prime_UTR 35.0%
TGCAATTTCCAAGGAAAACT+TGG - chr4_3:67196017-67196036 None:intergenic 35.0%
AACGTAAGTTGCAATTTCCA+AGG - chr4_3:67196026-67196045 None:intergenic 35.0%
GACTGTTCTTCTTTGTGATT+AGG + chr4_3:67196113-67196132 Msa0657510:five_prime_UTR 35.0%
!!! AGGTTCTGGGTTTTGAATTT+AGG + chr4_3:67196328-67196347 Msa0657510:five_prime_UTR 35.0%
TCATAAGTCTTTGCCAGAAA+AGG - chr4_3:67196444-67196463 None:intergenic 35.0%
TCTGGCAAAGACTTATGAAA+TGG + chr4_3:67196446-67196465 Msa0657510:CDS 35.0%
ATATGTATGTGCAGGGATTT+AGG + chr4_3:67196726-67196745 Msa0657510:intron 35.0%
CCCCCTTATAAAATCATCAT+TGG - chr4_3:67196780-67196799 None:intergenic 35.0%
ATGCAGAGAATGACTATGAA+CGG - chr4_3:67196840-67196859 None:intergenic 35.0%
TGAAATAGAGAAGCTGAAAC+AGG + chr4_3:67196913-67196932 Msa0657510:CDS 35.0%
CACTCATTCAAACATGGATT+TGG + chr4_3:67197336-67197355 Msa0657510:CDS 35.0%
ATATCTTGTCAGCAACTAGA+CGG + chr4_3:67197391-67197410 Msa0657510:CDS 35.0%
! ATGTCAATTTCAGGTGACTT+AGG - chr4_3:67197427-67197446 None:intergenic 35.0%
TCAACGTTCATGTCAATTTC+AGG - chr4_3:67197436-67197455 None:intergenic 35.0%
TGGGGTTAATGATGTATTCT+GGG + chr4_3:67197525-67197544 Msa0657510:CDS 35.0%
CAAAATCTACCATGATCACT+AGG - chr4_3:67197643-67197662 None:intergenic 35.0%
! CTAGTGATCATGGTAGATTT+TGG + chr4_3:67197641-67197660 Msa0657510:CDS 35.0%
AAACAATCATCCAGAACAGA+TGG + chr4_3:67197681-67197700 Msa0657510:CDS 35.0%
AACAATCATCCAGAACAGAT+GGG + chr4_3:67197682-67197701 Msa0657510:CDS 35.0%
CATATTTCATACTTTGGCTG+AGG + chr4_3:67197820-67197839 Msa0657510:three_prime_UTR 35.0%
CTATTGCAGACAAAAACCAA+TGG - chr4_3:67197872-67197891 None:intergenic 35.0%
ATTGGGGATTGATTAGGTTC+TGG + chr4_3:67196314-67196333 Msa0657510:five_prime_UTR 40.0%
TTGGGGATTGATTAGGTTCT+GGG + chr4_3:67196315-67196334 Msa0657510:five_prime_UTR 40.0%
TGAGGGTGAGATTTGTCAAT+TGG + chr4_3:67196354-67196373 Msa0657510:five_prime_UTR 40.0%
GAGGGTGAGATTTGTCAATT+GGG + chr4_3:67196355-67196374 Msa0657510:five_prime_UTR 40.0%
!!! TTTTGAGTGATGGATGAAGC+TGG + chr4_3:67196399-67196418 Msa0657510:exon 40.0%
TAAGTCTTTGCCAGAAAAGG+AGG - chr4_3:67196441-67196460 None:intergenic 40.0%
GGCAAAGACTTATGAAATGG+TGG + chr4_3:67196449-67196468 Msa0657510:CDS 40.0%
CGAACAAAAGTTTCGTTGTG+TGG + chr4_3:67196511-67196530 Msa0657510:CDS 40.0%
ATTCAGCTGCCTGATAAAAC+TGG - chr4_3:67196595-67196614 None:intergenic 40.0%
! GGGATTTAGGAAAGTTGATC+CGG + chr4_3:67196739-67196758 Msa0657510:intron 40.0%
TGCAGAGAATGACTATGAAC+GGG - chr4_3:67196839-67196858 None:intergenic 40.0%
GAAGAGATACCAGCATGATT+GGG + chr4_3:67196961-67196980 Msa0657510:CDS 40.0%
GCATTGTTCGAAAGATCAGT+TGG + chr4_3:67197003-67197022 Msa0657510:CDS 40.0%
! AGCTAGTGTTGAAGATGCTA+TGG + chr4_3:67197174-67197193 Msa0657510:CDS 40.0%
! TTATCCTCTGGATTTTCCCT+GGG - chr4_3:67197217-67197236 None:intergenic 40.0%
GTCAAAGTAGAGTTATCCTC+TGG - chr4_3:67197229-67197248 None:intergenic 40.0%
!! CTCAAGTTGATCCAATCTCT+CGG - chr4_3:67197260-67197279 None:intergenic 40.0%
CGTTCACACTCATTCAAACA+TGG + chr4_3:67197330-67197349 Msa0657510:CDS 40.0%
CTGGGGTTAATGATGTATTC+TGG + chr4_3:67197524-67197543 Msa0657510:CDS 40.0%
GAAGGAAAACCTAGTGATCA+TGG + chr4_3:67197631-67197650 Msa0657510:CDS 40.0%
! GTGATCATGGTAGATTTTGG+TGG + chr4_3:67197644-67197663 Msa0657510:CDS 40.0%
!! GTAGATTTTGGTGGAACATG+CGG + chr4_3:67197653-67197672 Msa0657510:CDS 40.0%
ACAATCATCCAGAACAGATG+GGG + chr4_3:67197683-67197702 Msa0657510:CDS 40.0%
! CAAAGATTGTGTCACTCCAT+TGG + chr4_3:67197853-67197872 Msa0657510:three_prime_UTR 40.0%
ATTGGGGATTGATTAGGTTC+TGG + chr4_3:67196314-67196333 Msa0657510:five_prime_UTR 40.0%
TTGGGGATTGATTAGGTTCT+GGG + chr4_3:67196315-67196334 Msa0657510:five_prime_UTR 40.0%
TGAGGGTGAGATTTGTCAAT+TGG + chr4_3:67196354-67196373 Msa0657510:five_prime_UTR 40.0%
GAGGGTGAGATTTGTCAATT+GGG + chr4_3:67196355-67196374 Msa0657510:five_prime_UTR 40.0%
!!! TTTTGAGTGATGGATGAAGC+TGG + chr4_3:67196399-67196418 Msa0657510:exon 40.0%
TAAGTCTTTGCCAGAAAAGG+AGG - chr4_3:67196441-67196460 None:intergenic 40.0%
GGCAAAGACTTATGAAATGG+TGG + chr4_3:67196449-67196468 Msa0657510:CDS 40.0%
CGAACAAAAGTTTCGTTGTG+TGG + chr4_3:67196511-67196530 Msa0657510:CDS 40.0%
ATTCAGCTGCCTGATAAAAC+TGG - chr4_3:67196595-67196614 None:intergenic 40.0%
! GGGATTTAGGAAAGTTGATC+CGG + chr4_3:67196739-67196758 Msa0657510:intron 40.0%
TGCAGAGAATGACTATGAAC+GGG - chr4_3:67196839-67196858 None:intergenic 40.0%
GAAGAGATACCAGCATGATT+GGG + chr4_3:67196961-67196980 Msa0657510:CDS 40.0%
GCATTGTTCGAAAGATCAGT+TGG + chr4_3:67197003-67197022 Msa0657510:CDS 40.0%
! AGCTAGTGTTGAAGATGCTA+TGG + chr4_3:67197174-67197193 Msa0657510:CDS 40.0%
! TTATCCTCTGGATTTTCCCT+GGG - chr4_3:67197217-67197236 None:intergenic 40.0%
GTCAAAGTAGAGTTATCCTC+TGG - chr4_3:67197229-67197248 None:intergenic 40.0%
!! CTCAAGTTGATCCAATCTCT+CGG - chr4_3:67197260-67197279 None:intergenic 40.0%
CGTTCACACTCATTCAAACA+TGG + chr4_3:67197330-67197349 Msa0657510:CDS 40.0%
CTGGGGTTAATGATGTATTC+TGG + chr4_3:67197524-67197543 Msa0657510:CDS 40.0%
GAAGGAAAACCTAGTGATCA+TGG + chr4_3:67197631-67197650 Msa0657510:CDS 40.0%
! GTGATCATGGTAGATTTTGG+TGG + chr4_3:67197644-67197663 Msa0657510:CDS 40.0%
!! GTAGATTTTGGTGGAACATG+CGG + chr4_3:67197653-67197672 Msa0657510:CDS 40.0%
ACAATCATCCAGAACAGATG+GGG + chr4_3:67197683-67197702 Msa0657510:CDS 40.0%
! CAAAGATTGTGTCACTCCAT+TGG + chr4_3:67197853-67197872 Msa0657510:three_prime_UTR 40.0%
AATACGTTGACCTTCTGCTC+AGG + chr4_3:67195745-67195764 Msa0657510:five_prime_UTR 45.0%
! AAGTTCTCTGCCTCCTTTTC+TGG + chr4_3:67196428-67196447 Msa0657510:CDS 45.0%
!! AATGGTGGATGATCGATCCT+CGG + chr4_3:67196464-67196483 Msa0657510:CDS 45.0%
GATGCACTCCACGAAACAAT+AGG - chr4_3:67196492-67196511 None:intergenic 45.0%
TTTCGTTGTGTGGAATCCTC+CGG + chr4_3:67196521-67196540 Msa0657510:CDS 45.0%
AGCAAAACCCTTGCGAATTC+CGG - chr4_3:67196543-67196562 None:intergenic 45.0%
CGAAGAGATACCAGCATGAT+TGG + chr4_3:67196960-67196979 Msa0657510:CDS 45.0%
GATACCAGCATGATTGGGAA+AGG + chr4_3:67196966-67196985 Msa0657510:CDS 45.0%
CTGCAATGCTTCAGAAACAG+AGG - chr4_3:67197062-67197081 None:intergenic 45.0%
TGCTGTAAATCTCTTGCCAC+TGG + chr4_3:67197093-67197112 Msa0657510:CDS 45.0%
AAGCCATGGAGAGAAAACGA+AGG + chr4_3:67197119-67197138 Msa0657510:CDS 45.0%
! CAACCTTCGTTTTCTCTCCA+TGG - chr4_3:67197125-67197144 None:intergenic 45.0%
TTAAAGCAACCACTTCTCGC+CGG - chr4_3:67197148-67197167 None:intergenic 45.0%
! GTTATCCTCTGGATTTTCCC+TGG - chr4_3:67197218-67197237 None:intergenic 45.0%
GACGTTAAACACCGAGAGAT+TGG + chr4_3:67197246-67197265 Msa0657510:CDS 45.0%
CGAGAGATTGGATCAACTTG+AGG + chr4_3:67197258-67197277 Msa0657510:CDS 45.0%
AAGAGTCTCCCAAAATGCCA+CGG - chr4_3:67197287-67197306 None:intergenic 45.0%
GAGACTCTTGCACATGAAGT+TGG + chr4_3:67197298-67197317 Msa0657510:CDS 45.0%
AATACGTTGACCTTCTGCTC+AGG + chr4_3:67195745-67195764 Msa0657510:five_prime_UTR 45.0%
! AAGTTCTCTGCCTCCTTTTC+TGG + chr4_3:67196428-67196447 Msa0657510:CDS 45.0%
!! AATGGTGGATGATCGATCCT+CGG + chr4_3:67196464-67196483 Msa0657510:CDS 45.0%
GATGCACTCCACGAAACAAT+AGG - chr4_3:67196492-67196511 None:intergenic 45.0%
TTTCGTTGTGTGGAATCCTC+CGG + chr4_3:67196521-67196540 Msa0657510:CDS 45.0%
AGCAAAACCCTTGCGAATTC+CGG - chr4_3:67196543-67196562 None:intergenic 45.0%
CGAAGAGATACCAGCATGAT+TGG + chr4_3:67196960-67196979 Msa0657510:CDS 45.0%
GATACCAGCATGATTGGGAA+AGG + chr4_3:67196966-67196985 Msa0657510:CDS 45.0%
CTGCAATGCTTCAGAAACAG+AGG - chr4_3:67197062-67197081 None:intergenic 45.0%
TGCTGTAAATCTCTTGCCAC+TGG + chr4_3:67197093-67197112 Msa0657510:CDS 45.0%
AAGCCATGGAGAGAAAACGA+AGG + chr4_3:67197119-67197138 Msa0657510:CDS 45.0%
! CAACCTTCGTTTTCTCTCCA+TGG - chr4_3:67197125-67197144 None:intergenic 45.0%
TTAAAGCAACCACTTCTCGC+CGG - chr4_3:67197148-67197167 None:intergenic 45.0%
! GTTATCCTCTGGATTTTCCC+TGG - chr4_3:67197218-67197237 None:intergenic 45.0%
GACGTTAAACACCGAGAGAT+TGG + chr4_3:67197246-67197265 Msa0657510:CDS 45.0%
CGAGAGATTGGATCAACTTG+AGG + chr4_3:67197258-67197277 Msa0657510:CDS 45.0%
AAGAGTCTCCCAAAATGCCA+CGG - chr4_3:67197287-67197306 None:intergenic 45.0%
GAGACTCTTGCACATGAAGT+TGG + chr4_3:67197298-67197317 Msa0657510:CDS 45.0%
AACAACGGCGCTAACGTTGT+TGG - chr4_3:67195936-67195955 None:intergenic 50.0%
CCACGAAACAATAGGATCCG+AGG - chr4_3:67196484-67196503 None:intergenic 50.0%
CCTCGGATCCTATTGTTTCG+TGG + chr4_3:67196481-67196500 Msa0657510:CDS 50.0%
GAATCCTCCGGAATTCGCAA+GGG + chr4_3:67196533-67196552 Msa0657510:CDS 50.0%
AAAACCCTTGCGAATTCCGG+AGG - chr4_3:67196540-67196559 None:intergenic 50.0%
! GAAAGTTGATCCGGAGCAGT+GGG + chr4_3:67196748-67196767 Msa0657510:CDS 50.0%
TTGGCAAATTCCCACTGCTC+CGG - chr4_3:67196761-67196780 None:intergenic 50.0%
TCAAGCACAAGCCCCTCTAA+CGG + chr4_3:67196865-67196884 Msa0657510:CDS 50.0%
CCTTTCAGACTCCGTTAGAG+GGG - chr4_3:67196879-67196898 None:intergenic 50.0%
GCCTTTCAGACTCCGTTAGA+GGG - chr4_3:67196880-67196899 None:intergenic 50.0%
TGCCTTTCAGACTCCGTTAG+AGG - chr4_3:67196881-67196900 None:intergenic 50.0%
GGATAGAGAACAACTCCTCG+TGG + chr4_3:67196934-67196953 Msa0657510:CDS 50.0%
CATGCCTTTCCCAATCATGC+TGG - chr4_3:67196973-67196992 None:intergenic 50.0%
GGAGAGAAAACGAAGGTTGC+CGG + chr4_3:67197126-67197145 Msa0657510:CDS 50.0%
! AGACTTCTGTAGCTTTGCCC+AGG + chr4_3:67197197-67197216 Msa0657510:CDS 50.0%
! GACTTCTGTAGCTTTGCCCA+GGG + chr4_3:67197198-67197217 Msa0657510:CDS 50.0%
TTTGCCCAGGGAAAATCCAG+AGG + chr4_3:67197210-67197229 Msa0657510:CDS 50.0%
!! TTGAGGCATCCGTGGCATTT+TGG + chr4_3:67197275-67197294 Msa0657510:CDS 50.0%
!! TGAGGCATCCGTGGCATTTT+GGG + chr4_3:67197276-67197295 Msa0657510:CDS 50.0%
AGAATCACCACTGCAGCAAC+TGG + chr4_3:67197505-67197524 Msa0657510:CDS 50.0%
GAATCACCACTGCAGCAACT+GGG + chr4_3:67197506-67197525 Msa0657510:CDS 50.0%
AATCACCACTGCAGCAACTG+GGG + chr4_3:67197507-67197526 Msa0657510:CDS 50.0%
ATTAACCCCAGTTGCTGCAG+TGG - chr4_3:67197515-67197534 None:intergenic 50.0%
CTGGGAACAGTTCTTGACAG+AGG + chr4_3:67197543-67197562 Msa0657510:CDS 50.0%
CAGTTCTTGACAGAGGATCC+TGG + chr4_3:67197550-67197569 Msa0657510:CDS 50.0%
CTAACATGCCCCATCTGTTC+TGG - chr4_3:67197694-67197713 None:intergenic 50.0%
AACAACGGCGCTAACGTTGT+TGG - chr4_3:67195936-67195955 None:intergenic 50.0%
CCACGAAACAATAGGATCCG+AGG - chr4_3:67196484-67196503 None:intergenic 50.0%
CCTCGGATCCTATTGTTTCG+TGG + chr4_3:67196481-67196500 Msa0657510:CDS 50.0%
GAATCCTCCGGAATTCGCAA+GGG + chr4_3:67196533-67196552 Msa0657510:CDS 50.0%
AAAACCCTTGCGAATTCCGG+AGG - chr4_3:67196540-67196559 None:intergenic 50.0%
! GAAAGTTGATCCGGAGCAGT+GGG + chr4_3:67196748-67196767 Msa0657510:CDS 50.0%
TTGGCAAATTCCCACTGCTC+CGG - chr4_3:67196761-67196780 None:intergenic 50.0%
TCAAGCACAAGCCCCTCTAA+CGG + chr4_3:67196865-67196884 Msa0657510:CDS 50.0%
CCTTTCAGACTCCGTTAGAG+GGG - chr4_3:67196879-67196898 None:intergenic 50.0%
GCCTTTCAGACTCCGTTAGA+GGG - chr4_3:67196880-67196899 None:intergenic 50.0%
TGCCTTTCAGACTCCGTTAG+AGG - chr4_3:67196881-67196900 None:intergenic 50.0%
GGATAGAGAACAACTCCTCG+TGG + chr4_3:67196934-67196953 Msa0657510:CDS 50.0%
CATGCCTTTCCCAATCATGC+TGG - chr4_3:67196973-67196992 None:intergenic 50.0%
GGAGAGAAAACGAAGGTTGC+CGG + chr4_3:67197126-67197145 Msa0657510:CDS 50.0%
! AGACTTCTGTAGCTTTGCCC+AGG + chr4_3:67197197-67197216 Msa0657510:CDS 50.0%
! GACTTCTGTAGCTTTGCCCA+GGG + chr4_3:67197198-67197217 Msa0657510:CDS 50.0%
TTTGCCCAGGGAAAATCCAG+AGG + chr4_3:67197210-67197229 Msa0657510:CDS 50.0%
!! TTGAGGCATCCGTGGCATTT+TGG + chr4_3:67197275-67197294 Msa0657510:CDS 50.0%
!! TGAGGCATCCGTGGCATTTT+GGG + chr4_3:67197276-67197295 Msa0657510:CDS 50.0%
AGAATCACCACTGCAGCAAC+TGG + chr4_3:67197505-67197524 Msa0657510:CDS 50.0%
GAATCACCACTGCAGCAACT+GGG + chr4_3:67197506-67197525 Msa0657510:CDS 50.0%
AATCACCACTGCAGCAACTG+GGG + chr4_3:67197507-67197526 Msa0657510:CDS 50.0%
ATTAACCCCAGTTGCTGCAG+TGG - chr4_3:67197515-67197534 None:intergenic 50.0%
CTGGGAACAGTTCTTGACAG+AGG + chr4_3:67197543-67197562 Msa0657510:CDS 50.0%
CAGTTCTTGACAGAGGATCC+TGG + chr4_3:67197550-67197569 Msa0657510:CDS 50.0%
CTAACATGCCCCATCTGTTC+TGG - chr4_3:67197694-67197713 None:intergenic 50.0%
GGAATCCTCCGGAATTCGCA+AGG + chr4_3:67196532-67196551 Msa0657510:CDS 55.0%
! GGAAAGTTGATCCGGAGCAG+TGG + chr4_3:67196747-67196766 Msa0657510:CDS 55.0%
CCCCTCTAACGGAGTCTGAA+AGG + chr4_3:67196876-67196895 Msa0657510:CDS 55.0%
GGTATCTCTTCGTCTCCACG+AGG - chr4_3:67196952-67196971 None:intergenic 55.0%
! GGATCAACTTGAGGCATCCG+TGG + chr4_3:67197267-67197286 Msa0657510:CDS 55.0%
GACAGAGGATCCTGGTGCAT+CGG + chr4_3:67197558-67197577 Msa0657510:CDS 55.0%
GGAATCCTCCGGAATTCGCA+AGG + chr4_3:67196532-67196551 Msa0657510:CDS 55.0%
! GGAAAGTTGATCCGGAGCAG+TGG + chr4_3:67196747-67196766 Msa0657510:CDS 55.0%
CCCCTCTAACGGAGTCTGAA+AGG + chr4_3:67196876-67196895 Msa0657510:CDS 55.0%
GGTATCTCTTCGTCTCCACG+AGG - chr4_3:67196952-67196971 None:intergenic 55.0%
! GGATCAACTTGAGGCATCCG+TGG + chr4_3:67197267-67197286 Msa0657510:CDS 55.0%
GACAGAGGATCCTGGTGCAT+CGG + chr4_3:67197558-67197577 Msa0657510:CDS 55.0%
CTTGCCACTGGCAGAAGCCA+TGG + chr4_3:67197105-67197124 Msa0657510:CDS 60.0%
CTCTCCATGGCTTCTGCCAG+TGG - chr4_3:67197112-67197131 None:intergenic 60.0%
ACCAGCTGCTGCTGCTCTTG+AGG + chr4_3:67197456-67197475 Msa0657510:CDS 60.0%
GCTGCAGTGGTGATTCTCGC+AGG - chr4_3:67197502-67197521 None:intergenic 60.0%
! TCCTGGTGCATCGGAAGCAC+AGG + chr4_3:67197567-67197586 Msa0657510:CDS 60.0%
TCCTGTGCTTCCGATGCACC+AGG - chr4_3:67197571-67197590 None:intergenic 60.0%
CTTGCCACTGGCAGAAGCCA+TGG + chr4_3:67197105-67197124 Msa0657510:CDS 60.0%
CTCTCCATGGCTTCTGCCAG+TGG - chr4_3:67197112-67197131 None:intergenic 60.0%
ACCAGCTGCTGCTGCTCTTG+AGG + chr4_3:67197456-67197475 Msa0657510:CDS 60.0%
GCTGCAGTGGTGATTCTCGC+AGG - chr4_3:67197502-67197521 None:intergenic 60.0%
! TCCTGGTGCATCGGAAGCAC+AGG + chr4_3:67197567-67197586 Msa0657510:CDS 60.0%
TCCTGTGCTTCCGATGCACC+AGG - chr4_3:67197571-67197590 None:intergenic 60.0%
CGAAGGTTGCCGGCGAGAAG+TGG + chr4_3:67197136-67197155 Msa0657510:CDS 65.0%
GCCTCAAGAGCAGCAGCAGC+TGG - chr4_3:67197460-67197479 None:intergenic 65.0%
CGAAGGTTGCCGGCGAGAAG+TGG + chr4_3:67197136-67197155 Msa0657510:CDS 65.0%
GCCTCAAGAGCAGCAGCAGC+TGG - chr4_3:67197460-67197479 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 67195717 67197946 67195717 ID=Msa0657510;Name=Msa0657510
chr4_3 mRNA 67195717 67197946 67195717 ID=Msa0657510-mRNA-1;Parent=Msa0657510;Name=Msa0657510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=691|1|1|1|1|1|2|214|401
chr4_3 exon 67195717 67196620 67195717 ID=Msa0657510-mRNA-1:exon:19339;Parent=Msa0657510-mRNA-1
chr4_3 exon 67196740 67197946 67196740 ID=Msa0657510-mRNA-1:exon:19340;Parent=Msa0657510-mRNA-1
chr4_3 five_prime_UTR 67195717 67196407 67195717 ID=Msa0657510-mRNA-1:five_prime_utr;Parent=Msa0657510-mRNA-1
chr4_3 CDS 67196408 67196620 67196408 ID=Msa0657510-mRNA-1:cds;Parent=Msa0657510-mRNA-1
chr4_3 CDS 67196740 67197732 67196740 ID=Msa0657510-mRNA-1:cds;Parent=Msa0657510-mRNA-1
chr4_3 three_prime_UTR 67197733 67197946 67197733 ID=Msa0657510-mRNA-1:three_prime_utr;Parent=Msa0657510-mRNA-1
Gene Sequence

>Msa0657510

ATGGATGAAGCTGGAAGTTCAAGTTCTCTGCCTCCTTTTCTGGCAAAGACTTATGAAATGGTGGATGATCGATCCTCGGATCCTATTGTTTCGTGGAGTGCATCGAACAAAAGTTTCGTTGTGTGGAATCCTCCGGAATTCGCAAGGGTTTTGCTTCCGAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCGGAGCAGTGGGAATTTGCCAATGATGATTTTATAAGGGGGCAACCGCATCTGATGAAGAATATTCATAGACGGAAGCCCGTTCATAGTCATTCTCTGCATAATCTTCAAGCACAAGCCCCTCTAACGGAGTCTGAAAGGCAGAGTATGATTGATGAAATAGAGAAGCTGAAACAGGATAGAGAACAACTCCTCGTGGAGACGAAGAGATACCAGCATGATTGGGAAAGGCATGAGATTCAAATGCATTGTTCGAAAGATCAGTTGGAAAAATTGGAACATAAACAACAAAAGATGTTGTCCTCTGTTTCTGAAGCATTGCAGAAACCTATGATTGCTGTAAATCTCTTGCCACTGGCAGAAGCCATGGAGAGAAAACGAAGGTTGCCGGCGAGAAGTGGTTGCTTTAATAATGAAGCTAGTGTTGAAGATGCTATGGAGACTTCTGTAGCTTTGCCCAGGGAAAATCCAGAGGATAACTCTACTTTGACGTTAAACACCGAGAGATTGGATCAACTTGAGGCATCCGTGGCATTTTGGGAGACTCTTGCACATGAAGTTGGCGACAATTTCGTTCACACTCATTCAAACATGGATTTGGATGAATCTACATGCTGTGCTGATAGTTTGTCGATATCTTGTCAGCAACTAGACGGTGAAGTTCGACCTAAGTCACCTGAAATTGACATGAACGTTGAACCAGCTGCTGCTGCTCTTGAGGCTGTTGCAGTAAAAGAACAACCTGCGAGAATCACCACTGCAGCAACTGGGGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCGGAAGCACAGGAAGTGCAATCAGAAAGAAAAGATAATAGTAGCAGAAAAAATGAAGGAAAACCTAGTGATCATGGTAGATTTTGGTGGAACATGCGGAAATCAAACAATCATCCAGAACAGATGGGGCATGTTAGTCAAGTAGAGAAAATTTAG
Protein sequence

>Msa0657510

MDEAGSSSSLPPFLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQPHLMKNIHRRKPVHSHSLHNLQAQAPLTESERQSMIDEIEKLKQDREQLLVETKRYQHDWERHEIQMHCSKDQLEKLEHKQQKMLSSVSEALQKPMIAVNLLPLAEAMERKRRLPARSGCFNNEASVEDAMETSVALPRENPEDNSTLTLNTERLDQLEASVAFWETLAHEVGDNFVHTHSNMDLDESTCCADSLSISCQQLDGEVRPKSPEIDMNVEPAAAALEAVAVKEQPARITTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDNSSRKNEGKPSDHGRFWWNMRKSNNHPEQMGHVSQVEKI*