AlfalfaGEDB | Msa0618630

M. sativa cultivar zhongmu-4 / Msa0618630

KEGG: K09414|K09419
GO: GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048530 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0090698 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618630	XP_003629847.1	97.257	401	11	0	1	401	1	401	0.0	814

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618630	sp\|O49403\|HFA4A_ARATH	51.095	411	179	11	1	400	1	400	4.06e-114	342

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618630	G7L7A0	97.257	401	11	0	1	401	1	401	0.0	814

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TFs/TRs:

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Gene ID	Type	Classification
Msa0618630	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0614350	Msa0618630	0.807940	3.953398e-50	-8.615850e-47
Msa0618630	Msa0638990	0.807248	5.546712e-50	-8.615850e-47
Msa0618630	Msa0657510	0.903869	2.218765e-79	-8.615850e-47
Msa0618630	Msa0697570	0.848826	4.784644e-60	-8.615850e-47
Msa0618630	Msa0701610	0.927032	2.065696e-91	-8.615850e-47
Msa0618630	Msa1317900	0.800006	1.764671e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618630	MtrunA17_Chr8g0379701	97.257	401	11	0	1	401	1	401	0.0	814
Msa0618630	MtrunA17_Chr2g0284481	40.633	411	186	9	1	383	2	382	5.40e-87	269
Msa0618630	MtrunA17_Chr6g0467041	36.212	359	177	9	6	358	16	328	2.88e-63	206
Msa0618630	MtrunA17_Chr5g0410881	51.630	184	82	1	11	187	31	214	8.86e-61	204
Msa0618630	MtrunA17_Chr8g0378061	52.239	201	84	4	13	207	23	217	1.51e-60	203
Msa0618630	MtrunA17_Chr2g0330821	49.744	195	86	2	1	187	60	250	1.07e-53	182
Msa0618630	MtrunA17_Chr1g0204741	36.082	291	166	4	11	288	39	322	8.55e-53	179
Msa0618630	MtrunA17_Chr4g0039891	44.865	185	94	2	10	187	10	193	1.17e-51	180
Msa0618630	MtrunA17_Chr4g0071051	47.486	179	87	1	11	189	100	271	2.86e-51	177
Msa0618630	MtrunA17_Chr7g0260331	39.130	230	126	3	11	226	48	277	7.08e-49	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0618630	AT4G18880.1	51.095	411	179	11	1	400	1	400	4.13e-115	342
Msa0618630	AT5G45710.3	49.492	394	145	8	1	391	1	343	2.38e-110	328
Msa0618630	AT5G45710.1	49.492	394	145	8	1	391	1	343	2.38e-110	328
Msa0618630	AT4G13980.1	48.500	200	94	2	13	207	24	219	2.34e-59	200
Msa0618630	AT1G32330.2	41.949	236	118	2	6	222	31	266	1.27e-58	198
Msa0618630	AT1G32330.1	41.949	236	118	2	6	222	31	266	1.57e-58	198
Msa0618630	AT5G45710.4	40.940	298	123	8	96	391	1	247	1.82e-55	183
Msa0618630	AT5G45710.2	40.940	298	123	8	96	391	1	247	1.82e-55	183
Msa0618630	AT5G16820.1	42.991	214	109	2	8	208	23	236	1.49e-54	187
Msa0618630	AT5G16820.2	42.991	214	109	2	8	208	23	236	1.49e-54	187

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Find 115 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTTGCGAATTCCGG+AGG	0.607238	4_2:+69560975	None:intergenic
AAACAATCATCCAGAACAGA+TGG	0.518388	4_2:-69559831	Msa0618630:CDS
AAAGGTTAAAGGGTTGTGTT+TGG	0.409541	4_2:+69561657	None:intergenic
AAATCACCTTATATATATTC+TGG	0.426534	4_2:+69561243	None:intergenic
AACAACGGCGCTAACGTTGT+TGG	0.424186	4_2:+69561572	None:intergenic
AACAATCATCCAGAACAGAT+GGG	0.574845	4_2:-69559830	Msa0618630:CDS
AACGTAAGTTGCAATTTCCA+AGG	0.545600	4_2:+69561482	None:intergenic
AAGAGATTTACAGCAATCAT+AGG	0.368528	4_2:+69560427	None:intergenic
AAGAGTCTCCCAAAATGCCA+CGG	0.657362	4_2:+69560228	None:intergenic
AAGCCATGGAGAGAAAACGA+AGG	0.761326	4_2:-69560393	Msa0618630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACGTTGTTGGATCTTAAA+AGG	+	chr4_2:69559796-69559815	None:intergenic	30.0%
CTTGGTTATACTTTGATTAG+AGG	-	chr4_2:69559955-69559974	Msa0618630:CDS	30.0%
ATACTTTGATTAGAGGGTTA+TGG	-	chr4_2:69559962-69559981	Msa0618630:CDS	30.0%
TCTTCTTTGTGATTAGGTTA+TGG	-	chr4_2:69559990-69560009	Msa0618630:CDS	30.0%
TGAAAAATTGGGGATTGATT+AGG	-	chr4_2:69560172-69560191	Msa0618630:CDS	30.0%
TTGTCAATTGGGAATTGATT+AGG	-	chr4_2:69560230-69560249	Msa0618630:CDS	30.0%
TTCATAGTATATGTATGTGC+AGG	-	chr4_2:69560582-69560601	Msa0618630:CDS	30.0%
TCATAGTATATGTATGTGCA+GGG	-	chr4_2:69560583-69560602	Msa0618630:CDS	30.0%
TGAATATTCTTCATCAGATG+CGG	+	chr4_2:69560670-69560689	None:intergenic	30.0%
GAAAGATCAGTTGGAAAAAT+TGG	-	chr4_2:69560876-69560895	Msa0618630:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	69559588	69561810	69559588	ID=Msa0618630;Name=Msa0618630
chr4_2	mRNA	69559588	69561810	69559588	ID=Msa0618630-mRNA-1;Parent=Msa0618630;Name=Msa0618630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=684\|1\|1\|1\|1\|1\|2\|214\|401
chr4_2	exon	69559588	69560794	69559588	ID=Msa0618630-mRNA-1:exon:20118;Parent=Msa0618630-mRNA-1
chr4_2	exon	69560914	69561810	69560914	ID=Msa0618630-mRNA-1:exon:20117;Parent=Msa0618630-mRNA-1
chr4_2	five_prime_UTR	69561127	69561810	69561127	ID=Msa0618630-mRNA-1:five_prime_utr;Parent=Msa0618630-mRNA-1
chr4_2	CDS	69560914	69561126	69560914	ID=Msa0618630-mRNA-1:cds;Parent=Msa0618630-mRNA-1
chr4_2	CDS	69559802	69560794	69559802	ID=Msa0618630-mRNA-1:cds;Parent=Msa0618630-mRNA-1
chr4_2	three_prime_UTR	69559588	69559801	69559588	ID=Msa0618630-mRNA-1:three_prime_utr;Parent=Msa0618630-mRNA-1

Gene Sequence

>Msa0618630

ATGGATGAAGCTGGAAGTTCAAGTTCTCTGCCTCCTTTTCTGGCAAAGACTTATGAAATGGTGGATGATCGATCCTCGGATCCTATTGTTTCGTGGAGTGCATCGAACAAAAGTTTCGTTGTGTGGAATCCTCCGGAATTCGCAAGGGTTTTGCTTCCGAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCGGAGCAGTGGGAATTTGCCAATGATGATTTTATAAGGGGGCAACCGCATCTGATGAAGAATATTCATAGACGGAAGCCCGTTCATAGTCATTCTCTGCATAATCTTCAAGCACAAGCCCCTCTAACGGAGTCTGAAAGGCAGAGTATGATTGATGAAATAGAGAAGCTGAAACAGGATAGAGAACAACTCCTCGTGGAGACGAAGAGATACCAGCATGATTGGGAAAGGCATGAGATTCAAATGCATTGTTCGAAAGATCAGTTGGAAAAATTGGAACATAAACAACAAAAGATGTTGTCTTCTGTTTCTGAAGCATTGCAGAAACCTATGATTGCTGTAAATCTCTTGCCACTGGCAGAAGCCATGGAGAGAAAACGAAGGTTGCCGGCGAGAAGTGGTTGCTTTAATAATGAAGCTAGTGTTGAAGATGCTATGGAGACTTCTGTAGCTTTGCCCAGGGAAAATCCAGAGGATAACTCTACTTTGACGTTAAACACCGAGAGATTGGATCAACTTGAGGCATCCGTGGCATTTTGGGAGACTCTTGCACATGAAGTTGGCGACAATTTCGTTCACACTCATTCAAACATGGATTTGGATGAATCTACATGTTGTGCTGATAGTTTGTCGATATCTTGTCAGCAACTAGACGGTGAAGTTCGACCTAAGTCACCTGAAATTGACATGAACGTTGAACCAGCTGCTGCTGCTCTTGAGGCTGTTGCAGTAAAAGAACAACCTGCGAGAATCACCACTGCAGCAACTGGGGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCGGAAGCACAGGAAGTGCAATCAGAAAGAAAAGATAATAGTAGCAGAAAAAATGAAGGAAAACCTAGTGATCATGGTAGATTTTGGTGGAACATGCGGAAATCAAACAATCATCCAGAACAGATGGGGCATGTTAGTCAAGTAGAGAAAATTTAG

Protein sequence

>Msa0618630

MDEAGSSSSLPPFLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQPHLMKNIHRRKPVHSHSLHNLQAQAPLTESERQSMIDEIEKLKQDREQLLVETKRYQHDWERHEIQMHCSKDQLEKLEHKQQKMLSSVSEALQKPMIAVNLLPLAEAMERKRRLPARSGCFNNEASVEDAMETSVALPRENPEDNSTLTLNTERLDQLEASVAFWETLAHEVGDNFVHTHSNMDLDESTCCADSLSISCQQLDGEVRPKSPEIDMNVEPAAAALEAVAVKEQPARITTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDNSSRKNEGKPSDHGRFWWNMRKSNNHPEQMGHVSQVEKI*