Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657570 | XP_013446829.1 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657570 | sp|Q5HZ05|TPPJ_ARATH | 70.541 | 370 | 93 | 6 | 1 | 357 | 1 | 367 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657570 | A0A072TUP0 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090770 | Msa0657570 | 0.807148 | 5.822513e-50 | -8.615850e-47 |
| Msa0657570 | Msa0704300 | 0.854288 | 1.359738e-61 | -8.615850e-47 |
| Msa0657570 | Msa0704310 | 0.924940 | 3.593145e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657570 | MtrunA17_Chr8g0382441 | 98.907 | 366 | 4 | 0 | 1 | 366 | 1 | 366 | 0.0 | 759 |
| Msa0657570 | MtrunA17_Chr3g0115661 | 61.983 | 363 | 127 | 3 | 3 | 359 | 4 | 361 | 5.22e-161 | 455 |
| Msa0657570 | MtrunA17_Chr5g0425711 | 66.773 | 313 | 102 | 2 | 50 | 362 | 66 | 376 | 1.05e-151 | 432 |
| Msa0657570 | MtrunA17_Chr4g0056481 | 52.381 | 378 | 157 | 4 | 8 | 365 | 16 | 390 | 4.97e-138 | 398 |
| Msa0657570 | MtrunA17_Chr4g0018441 | 53.107 | 354 | 138 | 4 | 32 | 363 | 39 | 386 | 3.40e-130 | 378 |
| Msa0657570 | MtrunA17_Chr3g0079281 | 52.486 | 362 | 153 | 4 | 17 | 359 | 25 | 386 | 1.86e-129 | 376 |
| Msa0657570 | MtrunA17_Chr3g0126491 | 52.759 | 290 | 127 | 2 | 79 | 358 | 66 | 355 | 1.67e-108 | 322 |
| Msa0657570 | MtrunA17_Chr8g0347141 | 47.797 | 295 | 144 | 2 | 74 | 358 | 17 | 311 | 7.93e-102 | 303 |
| Msa0657570 | MtrunA17_Chr4g0018781 | 49.398 | 83 | 41 | 1 | 74 | 155 | 22 | 104 | 3.21e-18 | 79.3 |
| Msa0657570 | MtrunA17_Chr4g0018791 | 50.000 | 62 | 30 | 1 | 240 | 300 | 2 | 63 | 8.74e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657570 | AT5G65140.1 | 70.541 | 370 | 93 | 6 | 1 | 357 | 1 | 367 | 0.0 | 531 |
| Msa0657570 | AT5G10100.3 | 69.041 | 365 | 105 | 4 | 4 | 361 | 5 | 368 | 0.0 | 524 |
| Msa0657570 | AT5G10100.1 | 69.041 | 365 | 105 | 4 | 4 | 361 | 16 | 379 | 0.0 | 524 |
| Msa0657570 | AT5G10100.2 | 68.678 | 348 | 101 | 4 | 4 | 344 | 5 | 351 | 6.47e-177 | 496 |
| Msa0657570 | AT4G39770.1 | 66.106 | 357 | 101 | 4 | 3 | 357 | 6 | 344 | 3.68e-173 | 486 |
| Msa0657570 | AT5G10100.4 | 64.384 | 365 | 102 | 5 | 4 | 361 | 16 | 359 | 2.50e-168 | 474 |
| Msa0657570 | AT2G22190.1 | 69.565 | 322 | 91 | 3 | 38 | 358 | 35 | 350 | 6.43e-166 | 468 |
| Msa0657570 | AT5G65140.3 | 69.939 | 326 | 82 | 6 | 1 | 313 | 1 | 323 | 1.60e-165 | 466 |
| Msa0657570 | AT4G39770.2 | 65.507 | 345 | 99 | 4 | 3 | 345 | 6 | 332 | 1.94e-164 | 463 |
| Msa0657570 | AT1G35910.1 | 64.456 | 377 | 112 | 7 | 1 | 363 | 1 | 369 | 9.83e-163 | 460 |
| Msa0657570 | AT2G22190.2 | 69.355 | 310 | 88 | 3 | 38 | 346 | 35 | 338 | 1.83e-158 | 449 |
| Msa0657570 | AT1G78090.1 | 61.662 | 373 | 126 | 6 | 1 | 359 | 1 | 370 | 8.86e-156 | 443 |
| Msa0657570 | AT1G78090.2 | 61.838 | 359 | 120 | 6 | 1 | 345 | 1 | 356 | 4.20e-149 | 425 |
| Msa0657570 | AT5G65140.2 | 68.317 | 303 | 80 | 6 | 1 | 290 | 1 | 300 | 2.59e-147 | 419 |
| Msa0657570 | AT1G22210.1 | 61.300 | 323 | 113 | 3 | 43 | 359 | 1 | 317 | 8.21e-138 | 395 |
| Msa0657570 | AT5G51460.2 | 54.252 | 341 | 133 | 6 | 35 | 358 | 48 | 382 | 4.18e-128 | 373 |
| Msa0657570 | AT5G51460.4 | 54.252 | 341 | 133 | 6 | 35 | 358 | 48 | 382 | 4.18e-128 | 373 |
| Msa0657570 | AT5G51460.1 | 54.094 | 342 | 133 | 7 | 35 | 358 | 48 | 383 | 2.66e-126 | 368 |
| Msa0657570 | AT5G51460.5 | 54.094 | 342 | 133 | 7 | 35 | 358 | 48 | 383 | 2.66e-126 | 368 |
| Msa0657570 | AT5G51460.3 | 54.094 | 342 | 133 | 7 | 35 | 358 | 48 | 383 | 2.66e-126 | 368 |
| Msa0657570 | AT4G22590.1 | 52.907 | 344 | 142 | 4 | 31 | 357 | 29 | 369 | 9.25e-123 | 359 |
| Msa0657570 | AT4G12430.1 | 56.211 | 322 | 128 | 3 | 53 | 362 | 45 | 365 | 4.76e-119 | 349 |
Find 124 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACTCACTTTGTTGTATT+TGG | 0.157241 | 4_3:+67319565 | None:intergenic |
| AGATATGTTTGAACAAATTA+TGG | 0.199793 | 4_3:-67320030 | Msa0657570:CDS |
| AGATTCGTCCCGCAATTAAA+TGG | 0.230940 | 4_3:-67318805 | Msa0657570:CDS |
| GATTATGATTAAATATTATA+AGG | 0.237519 | 4_3:-67317690 | Msa0657570:three_prime_UTR |
| GCTACCATTCATTCCGGTTT+TGG | 0.246623 | 4_3:+67320436 | None:intergenic |
| TAGCTGAAGAATACAATTCT+TGG | 0.262718 | 4_3:-67320244 | Msa0657570:CDS |
| TTTCCTACTGCAATTGTTAC+TGG | 0.265079 | 4_3:-67319783 | Msa0657570:CDS |
| CAGAATCACTTCATCTGATA+TGG | 0.267739 | 4_3:+67317738 | None:intergenic |
| ATCAAAAGATATGTATTTAT+AGG | 0.275040 | 4_3:-67317661 | Msa0657570:three_prime_UTR |
| TGAAGAGGCAAAAGAGAGAT+AGG | 0.276519 | 4_3:+67320719 | None:intergenic |
| AGAGACATAGATCAAGGTTT+TGG | 0.278672 | 4_3:-67318197 | Msa0657570:CDS |
| CCCTTGTCCCATTTAATTGC+GGG | 0.298244 | 4_3:+67318797 | None:intergenic |
| AAAGAGAGATAGGGAATCTT+TGG | 0.316424 | 4_3:+67320729 | None:intergenic |
| AGTCATGGCATGGATATTAA+AGG | 0.325492 | 4_3:-67319602 | Msa0657570:CDS |
| GAAATTATGCTTACCTCATT+AGG | 0.325958 | 4_3:+67318119 | None:intergenic |
| GATGTATTTCCTGTTTATAT+TGG | 0.349971 | 4_3:-67318414 | Msa0657570:CDS |
| TTCTTCAAAATTCTCCTCCT+TGG | 0.362292 | 4_3:+67320356 | None:intergenic |
| TGAAGAAAATACTAGAAAAT+AGG | 0.362475 | 4_3:+67320633 | None:intergenic |
| GGAGAAGATTTGACATGAGT+TGG | 0.374230 | 4_3:+67320272 | None:intergenic |
| TATGGATTTCCTTCAGCGTT+TGG | 0.380303 | 4_3:-67318021 | Msa0657570:CDS |
| TTGAAGAATCTTGAAATCAA+TGG | 0.381109 | 4_3:-67320341 | Msa0657570:CDS |
| AGAGAGCAAGAGAGTGGAAG+TGG | 0.389162 | 4_3:+67320774 | None:intergenic |
| CTTTAGATGTGTTGATGAAA+AGG | 0.396311 | 4_3:-67319159 | Msa0657570:intron |
| TACACCCTAGAGCGTGATCT+TGG | 0.396817 | 4_3:+67317978 | None:intergenic |
| CCTTGTGTTAGACGAAGCTT+CGG | 0.397569 | 4_3:+67319001 | None:intergenic |
| TACACAGAGATGGGTTGAAT+TGG | 0.408365 | 4_3:-67319056 | Msa0657570:intron |
| AGTACCGCTACCATTCATTC+CGG | 0.416696 | 4_3:+67320430 | None:intergenic |
| GAGAGCAAGAGAGTGGAAGT+GGG | 0.417596 | 4_3:+67320775 | None:intergenic |
| TGCTTATTAAGTACTTAGTA+TGG | 0.421067 | 4_3:-67317623 | Msa0657570:three_prime_UTR |
| AATATTTAATCATAATCATA+AGG | 0.425530 | 4_3:+67317696 | None:intergenic |
| CTATCATCACCAATATAAAC+AGG | 0.428430 | 4_3:+67318405 | None:intergenic |
| TATGCAGCAGCTGTGTCCTT+TGG | 0.429413 | 4_3:+67318155 | None:intergenic |
| CTTGTGTTAGACGAAGCTTC+GGG | 0.443939 | 4_3:+67319002 | None:intergenic |
| CTGTGGGTTTGATTTATAGT+TGG | 0.448630 | 4_3:+67320813 | None:intergenic |
| GTGACTAACCTCATTTATCA+TGG | 0.449499 | 4_3:+67319363 | None:intergenic |
| ATACTAGAAAATAGGTTAAG+AGG | 0.451702 | 4_3:+67320641 | None:intergenic |
| CCGTGCTTTCATGTCTGAAT+CGG | 0.453757 | 4_3:-67319931 | Msa0657570:intron |
| AACCGATGAAGATGCATTCA+AGG | 0.456478 | 4_3:-67318382 | Msa0657570:intron |
| ACAGAAGCCACCGGCAGCAC+CGG | 0.461102 | 4_3:-67320396 | Msa0657570:CDS |
| TATCATGGGAACAAATTCTC+TGG | 0.470973 | 4_3:+67319378 | None:intergenic |
| TCAGACATGAAAGCACGGTC+GGG | 0.472310 | 4_3:+67319936 | None:intergenic |
| CTATATTATGCTGGAAGTCA+TGG | 0.475549 | 4_3:-67319617 | Msa0657570:CDS |
| ACAAATTATGGATGCTGCAA+AGG | 0.481613 | 4_3:-67320018 | Msa0657570:CDS |
| TCCTTCAGCGTTTGGTGGAG+TGG | 0.484492 | 4_3:-67318013 | Msa0657570:CDS |
| GCCCTTGTCCCATTTAATTG+CGG | 0.492631 | 4_3:+67318796 | None:intergenic |
| GATTCGTCCCGCAATTAAAT+GGG | 0.493006 | 4_3:-67318804 | Msa0657570:CDS |
| GTCATGGCATGGATATTAAA+GGG | 0.494286 | 4_3:-67319601 | Msa0657570:CDS |
| TTGGATGAACTATATTATGC+TGG | 0.495236 | 4_3:-67319626 | Msa0657570:CDS |
| TCAGATGAAGTGATTCTGAA+TGG | 0.496665 | 4_3:-67317733 | Msa0657570:three_prime_UTR |
| AGAGCAAGAGAGTGGAAGTG+GGG | 0.497163 | 4_3:+67320776 | None:intergenic |
| CGGTCGGGGTCATCCACAAT+TGG | 0.498926 | 4_3:+67319951 | None:intergenic |
| CATCTCCAAGATCACGCTCT+AGG | 0.500203 | 4_3:-67317983 | Msa0657570:CDS |
| TTGTATTCTTCAGCTAAAGA+AGG | 0.501331 | 4_3:+67320251 | None:intergenic |
| TAGAAAATAGGTTAAGAGGT+GGG | 0.502439 | 4_3:+67320645 | None:intergenic |
| AGCCAAGTAGTAATTAGTAC+GGG | 0.502654 | 4_3:-67317780 | Msa0657570:three_prime_UTR |
| GAACTTGTGGTTCTCAACTC+TGG | 0.503615 | 4_3:+67319196 | None:intergenic |
| AGAAAATAGGTTAAGAGGTG+GGG | 0.509951 | 4_3:+67320646 | None:intergenic |
| GAGACCAAAACCGGAATGAA+TGG | 0.513958 | 4_3:-67320440 | Msa0657570:CDS |
| ATTTGTTCCCATGATAAATG+AGG | 0.514951 | 4_3:-67319371 | Msa0657570:intron |
| CAGAAGCCACCGGCAGCACC+GGG | 0.515096 | 4_3:-67320395 | Msa0657570:CDS |
| ATGTATCCACCCGGTGCTGC+CGG | 0.516770 | 4_3:+67320386 | None:intergenic |
| ATCTCCAAGATCACGCTCTA+GGG | 0.517903 | 4_3:-67317982 | Msa0657570:CDS |
| TGGTTCTCAACTCTGGCACC+AGG | 0.519019 | 4_3:+67319203 | None:intergenic |
| GAAGAGGCAAAAGAGAGATA+GGG | 0.522287 | 4_3:+67320720 | None:intergenic |
| GAGCAAGAGAGTGGAAGTGG+GGG | 0.523845 | 4_3:+67320777 | None:intergenic |
| CAAATTATGGATGCTGCAAA+GGG | 0.526052 | 4_3:-67320017 | Msa0657570:CDS |
| TGCCGGTGGCTTCTGTGCCA+CGG | 0.527210 | 4_3:+67320403 | None:intergenic |
| AAATTAAGAGACATAGATCA+AGG | 0.529862 | 4_3:-67318203 | Msa0657570:CDS |
| CAGATGAAGTGATTCTGAAT+GGG | 0.530345 | 4_3:-67317732 | Msa0657570:three_prime_UTR |
| TAGCCAAGTAGTAATTAGTA+CGG | 0.530397 | 4_3:-67317781 | Msa0657570:three_prime_UTR |
| TTTCTTCATCACAAACCCTA+AGG | 0.530816 | 4_3:-67320618 | Msa0657570:intron |
| TCGACAGCTTCGCCATCCAT+CGG | 0.532132 | 4_3:-67320057 | Msa0657570:intron |
| AATTAAATGGGACAAGGGCA+AGG | 0.533517 | 4_3:-67318792 | Msa0657570:CDS |
| ATGGGAACAAATTCTCTGGC+AGG | 0.537434 | 4_3:+67319382 | None:intergenic |
| TACCTTGAATGCATCTTCAT+CGG | 0.539742 | 4_3:+67318380 | None:intergenic |
| GGATTTCCTTCAGCGTTTGG+TGG | 0.542635 | 4_3:-67318018 | Msa0657570:CDS |
| TTCAGACATGAAAGCACGGT+CGG | 0.542972 | 4_3:+67319935 | None:intergenic |
| AGGAAATACATCGTTACAGT+TGG | 0.546340 | 4_3:+67318425 | None:intergenic |
| TCCACTCCACCAAACGCTGA+AGG | 0.548294 | 4_3:+67318012 | None:intergenic |
| GGAATGCAAAAGAGGAAGAA+GGG | 0.548624 | 4_3:+67320692 | None:intergenic |
| TGGAATGCAAAAGAGGAAGA+AGG | 0.550220 | 4_3:+67320691 | None:intergenic |
| GGGGAAGAAGACATAGGCTG+TGG | 0.552713 | 4_3:+67320796 | None:intergenic |
| ATTGCAATGGAATGCAAAAG+AGG | 0.553225 | 4_3:+67320684 | None:intergenic |
| TGGTACTTTGTCACCAATTG+TGG | 0.553666 | 4_3:-67319964 | Msa0657570:CDS |
| GAGAAAACAAAATCAACTCC+TGG | 0.555984 | 4_3:-67319221 | Msa0657570:CDS |
| TATCCACCCGGTGCTGCCGG+TGG | 0.562450 | 4_3:+67320389 | None:intergenic |
| GTGGATACATTCACATTCCA+AGG | 0.565455 | 4_3:-67320373 | Msa0657570:CDS |
| GTTGTGTCTGAGACCAAAAC+CGG | 0.569541 | 4_3:-67320449 | Msa0657570:CDS |
| AGGAAGAAGGGAAATTGAAG+AGG | 0.574994 | 4_3:+67320704 | None:intergenic |
| GAAAATAGGTTAAGAGGTGG+GGG | 0.578509 | 4_3:+67320647 | None:intergenic |
| ACATATCTAATGCCGATGGA+TGG | 0.584345 | 4_3:+67320045 | None:intergenic |
| CTCTTTACAAGAGCCTAATG+AGG | 0.589522 | 4_3:-67318132 | Msa0657570:intron |
| TCTAGTCTCTAAGTTTCCAA+AGG | 0.593019 | 4_3:-67318171 | Msa0657570:CDS |
| AAGAATCTTGAAATCAATGG+AGG | 0.594315 | 4_3:-67320338 | Msa0657570:CDS |
| TCCCGCAATTAAATGGGACA+AGG | 0.596250 | 4_3:-67318798 | Msa0657570:CDS |
| TACCGTGGCACAGAAGCCAC+CGG | 0.596430 | 4_3:-67320405 | Msa0657570:CDS |
| TCGTCTAACACAAGGAAGGA+AGG | 0.605150 | 4_3:-67318993 | Msa0657570:intron |
| TGACTAACCTCATTTATCAT+GGG | 0.605779 | 4_3:+67319364 | None:intergenic |
| AGACATTGTACATCCCTGAC+TGG | 0.617191 | 4_3:-67317950 | Msa0657570:three_prime_UTR |
| CTAGAAAATAGGTTAAGAGG+TGG | 0.619174 | 4_3:+67320644 | None:intergenic |
| CAGACATGAAAGCACGGTCG+GGG | 0.619472 | 4_3:+67319937 | None:intergenic |
| TTATGCTGGAAGTCATGGCA+TGG | 0.621883 | 4_3:-67319612 | Msa0657570:CDS |
| CTTCCAGTAACAATTGCAGT+AGG | 0.624355 | 4_3:+67319780 | None:intergenic |
| TCAAACATATCTAATGCCGA+TGG | 0.625537 | 4_3:+67320041 | None:intergenic |
| GAGGACAAAGAATCAATACA+TGG | 0.625642 | 4_3:-67320319 | Msa0657570:CDS |
| GTGAGAAGTGGATATTGCAA+TGG | 0.629137 | 4_3:+67320671 | None:intergenic |
| AAGCCACCGGCAGCACCGGG+TGG | 0.632503 | 4_3:-67320392 | Msa0657570:CDS |
| CCGAAGCTTCGTCTAACACA+AGG | 0.637863 | 4_3:-67319001 | Msa0657570:CDS |
| GAACTGAGGTGCAGAACTTG+TGG | 0.643653 | 4_3:+67319183 | None:intergenic |
| TTTGTAGAATAACAAAGCAG+AGG | 0.655035 | 4_3:-67319419 | Msa0657570:intron |
| CCCGCAATTAAATGGGACAA+GGG | 0.655310 | 4_3:-67318797 | Msa0657570:CDS |
| CAAGTAGTAATTAGTACGGG+GGG | 0.655720 | 4_3:-67317777 | Msa0657570:three_prime_UTR |
| AGCTTCGTCTAACACAAGGA+AGG | 0.657256 | 4_3:-67318997 | Msa0657570:CDS |
| CCAAGTAGTAATTAGTACGG+GGG | 0.657430 | 4_3:-67317778 | Msa0657570:three_prime_UTR |
| AAAACCGGAATGAATGGTAG+CGG | 0.657999 | 4_3:-67320434 | Msa0657570:CDS |
| TGGTAGCGGTACTATTACCG+TGG | 0.662829 | 4_3:-67320420 | Msa0657570:CDS |
| AAACTGTTAAGAAACTTGCA+AGG | 0.665580 | 4_3:-67319809 | Msa0657570:CDS |
| GAAGATGACTCAAAAGAATG+TGG | 0.668118 | 4_3:-67320471 | Msa0657570:exon |
| GCCAAGTAGTAATTAGTACG+GGG | 0.668981 | 4_3:-67317779 | Msa0657570:three_prime_UTR |
| CCGATTCAGACATGAAAGCA+CGG | 0.680880 | 4_3:+67319931 | None:intergenic |
| GGGAAGAAGACATAGGCTGT+GGG | 0.685814 | 4_3:+67320797 | None:intergenic |
| AACACATCTAAAGTGAACTG+AGG | 0.706405 | 4_3:+67319169 | None:intergenic |
| GGAATGTGAATGTATCCACC+CGG | 0.718303 | 4_3:+67320377 | None:intergenic |
| GATACATTCACATTCCAAGG+AGG | 0.760013 | 4_3:-67320370 | Msa0657570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAACAGATTTATTTAA+AGG | + | chr4_3:67318590-67318609 | None:intergenic | 10.0% |
| !! | TCAAAAAAGATAAAAAAAAA+GGG | + | chr4_3:67318753-67318772 | None:intergenic | 10.0% |
| !! | TTCAAAAAAGATAAAAAAAA+AGG | + | chr4_3:67318754-67318773 | None:intergenic | 10.0% |
| !!! | TTCTAAAAATTAATTAACAT+TGG | - | chr4_3:67319015-67319034 | Msa0657570:CDS | 10.0% |
| !!! | TTTCTTTATAATCAATTTTT+TGG | - | chr4_3:67319509-67319528 | Msa0657570:intron | 10.0% |
| !! | TTCATTTAGAAATAAAAAAT+TGG | + | chr4_3:67320136-67320155 | None:intergenic | 10.0% |
| !! | TTATTAATTTAATATCATTC+AGG | - | chr4_3:67320418-67320437 | Msa0657570:CDS | 10.0% |
| !! | AATATTTAATCATAATCATA+AGG | + | chr4_3:67320770-67320789 | None:intergenic | 10.0% |
| !! | GATTATGATTAAATATTATA+AGG | - | chr4_3:67320773-67320792 | Msa0657570:five_prime_UTR | 10.0% |
| !!! | ATTGTAATCTTTTTTTAGTA+AGG | - | chr4_3:67317920-67317939 | Msa0657570:three_prime_UTR | 15.0% |
| !! | TGTGATATTAATATATTGTT+TGG | - | chr4_3:67317943-67317962 | Msa0657570:three_prime_UTR | 15.0% |
| !! | ATATTAATATATTGTTTGGT+TGG | - | chr4_3:67317947-67317966 | Msa0657570:three_prime_UTR | 15.0% |
| !! | TATTAATATATTGTTTGGTT+GGG | - | chr4_3:67317948-67317967 | Msa0657570:three_prime_UTR | 15.0% |
| !! | AACAACACATATAAATAATA+AGG | + | chr4_3:67318382-67318401 | None:intergenic | 15.0% |
| !! | AAATTAATTAACATTGGTAA+TGG | - | chr4_3:67319021-67319040 | Msa0657570:CDS | 15.0% |
| !!! | TTTATAATCAATTTTTTGGA+GGG | - | chr4_3:67319513-67319532 | Msa0657570:intron | 15.0% |
| !! | ATTATTACAAAGAATTAAGA+GGG | - | chr4_3:67319881-67319900 | Msa0657570:intron | 15.0% |
| !! | TTTATTAGTTAGAAAATTGA+TGG | + | chr4_3:67319999-67320018 | None:intergenic | 15.0% |
| !! | AAAAAAACAATTAAGATCAT+TGG | + | chr4_3:67320110-67320129 | None:intergenic | 15.0% |
| !! | ATTTAGAAATAAAAAATTGG+AGG | + | chr4_3:67320133-67320152 | None:intergenic | 15.0% |
| !! | ATCAGTAAAACATATATTTA+AGG | + | chr4_3:67320398-67320417 | None:intergenic | 15.0% |
| !! | AACATAGAAAGAAAAAAAAA+AGG | + | chr4_3:67320554-67320573 | None:intergenic | 15.0% |
| !! | ATCAAAAGATATGTATTTAT+AGG | - | chr4_3:67320802-67320821 | Msa0657570:five_prime_UTR | 15.0% |
| !! | TGAAGAAAATACTAGAAAAT+AGG | + | chr4_3:67317833-67317852 | None:intergenic | 20.0% |
| !! | TAAGAGTTTCAATGAAATTA+AGG | + | chr4_3:67317887-67317906 | None:intergenic | 20.0% |
| !! | AGATATGTTTGAACAAATTA+TGG | - | chr4_3:67318433-67318452 | Msa0657570:CDS | 20.0% |
| !!! | AAAACAGATTGTTATGTTTT+TGG | - | chr4_3:67318469-67318488 | Msa0657570:intron | 20.0% |
| !!! | TTAGTCTTTGTTTATAAAAC+TGG | - | chr4_3:67318555-67318574 | Msa0657570:intron | 20.0% |
| !!! | TTTTACCTTTGTTAATTTTC+AGG | - | chr4_3:67319202-67319221 | Msa0657570:CDS | 20.0% |
| !!! | CTTTATAATCAATTTTTTGG+AGG | - | chr4_3:67319512-67319531 | Msa0657570:intron | 20.0% |
| !! | CTCTTAATTCTTTGTAATAA+TGG | + | chr4_3:67319882-67319901 | None:intergenic | 20.0% |
| !! | CATTATTACAAAGAATTAAG+AGG | - | chr4_3:67319880-67319899 | Msa0657570:intron | 20.0% |
| !! | AATATATATTTAGAAACGCA+TGG | + | chr4_3:67319961-67319980 | None:intergenic | 20.0% |
| !!! | ATTTAATATCATTCAGGTTA+TGG | - | chr4_3:67320424-67320443 | Msa0657570:CDS | 20.0% |
| ! | TGATTTATAGTTGGAAAAAC+AGG | + | chr4_3:67317644-67317663 | None:intergenic | 25.0% |
| ! | ATACTAGAAAATAGGTTAAG+AGG | + | chr4_3:67317825-67317844 | None:intergenic | 25.0% |
| ! | AACGTATATATCAAACCTTA+GGG | + | chr4_3:67317863-67317882 | None:intergenic | 25.0% |
| ! | TAACGTATATATCAAACCTT+AGG | + | chr4_3:67317864-67317883 | None:intergenic | 25.0% |
| ! | TTGAAGAATCTTGAAATCAA+TGG | - | chr4_3:67318122-67318141 | Msa0657570:intron | 25.0% |
| !! | GTATTTGTTCAAAATTTTGG+TGG | + | chr4_3:67318299-67318318 | None:intergenic | 25.0% |
| !! | CCAGTATTTGTTCAAAATTT+TGG | + | chr4_3:67318302-67318321 | None:intergenic | 25.0% |
| !! | CCAAAATTTTGAACAAATAC+TGG | - | chr4_3:67318299-67318318 | Msa0657570:intron | 25.0% |
| !!! | GTTATGTTTTTGGATTATGA+TGG | - | chr4_3:67318479-67318498 | Msa0657570:intron | 25.0% |
| ! | TATCACATATATATCAGATG+AGG | - | chr4_3:67318630-67318649 | Msa0657570:intron | 25.0% |
| !! | TTTTTCTGCAAACAATTTTC+AGG | - | chr4_3:67318797-67318816 | Msa0657570:CDS | 25.0% |
| !! | TTTACTCACTTTGTTGTATT+TGG | + | chr4_3:67318901-67318920 | None:intergenic | 25.0% |
| ! | AAAAATATACTACTGTACTG+TGG | + | chr4_3:67318947-67318966 | None:intergenic | 25.0% |
| !!! | AATTTTAAGACCTTATTCCA+CGG | + | chr4_3:67318989-67319008 | None:intergenic | 25.0% |
| ! | TACAATAAACAACTTTGAGT+TGG | + | chr4_3:67319389-67319408 | None:intergenic | 25.0% |
| !!! | GAGTGTATATTTTTAATGGT+GGG | - | chr4_3:67319535-67319554 | Msa0657570:intron | 25.0% |
| !!! | AGTGTATATTTTTAATGGTG+GGG | - | chr4_3:67319536-67319555 | Msa0657570:intron | 25.0% |
| ! | CAATGTCAATTGTTTAATAC+AGG | - | chr4_3:67319629-67319648 | Msa0657570:CDS | 25.0% |
| ! | CAATTGTTTAATACAGGTAT+TGG | - | chr4_3:67319635-67319654 | Msa0657570:CDS | 25.0% |
| ! | GTAGCATATTTATAAGTTTG+TGG | + | chr4_3:67319818-67319837 | None:intergenic | 25.0% |
| ! | TGTAATAATGGTCAAATACT+TGG | + | chr4_3:67319870-67319889 | None:intergenic | 25.0% |
| !! | ACTAATAAATCGTTTTCAAC+AGG | - | chr4_3:67320010-67320029 | Msa0657570:CDS | 25.0% |
| ! | GATGTATTTCCTGTTTATAT+TGG | - | chr4_3:67320049-67320068 | Msa0657570:CDS | 25.0% |
| ! | AGAACTAAACATAATTGACT+TGG | + | chr4_3:67320179-67320198 | None:intergenic | 25.0% |
| !! | TAGTTCTTTGTAAACTGTTT+TGG | - | chr4_3:67320192-67320211 | Msa0657570:intron | 25.0% |
| ! | AAATTAAGAGACATAGATCA+AGG | - | chr4_3:67320260-67320279 | Msa0657570:CDS | 25.0% |
| !! | ATGTATTTTATAACCAGTCA+GGG | + | chr4_3:67320529-67320548 | None:intergenic | 25.0% |
| ! | TACAAAAGAGCAAAAATGTA+TGG | - | chr4_3:67320587-67320606 | Msa0657570:intron | 25.0% |
| ! | TGCTTATTAAGTACTTAGTA+TGG | - | chr4_3:67320840-67320859 | Msa0657570:five_prime_UTR | 25.0% |
| GAAAAACAGGAAAATCCAAA+AGG | + | chr4_3:67317631-67317650 | None:intergenic | 30.0% | |
| TAGAAAATAGGTTAAGAGGT+GGG | + | chr4_3:67317821-67317840 | None:intergenic | 30.0% | |
| AAGAATCTTGAAATCAATGG+AGG | - | chr4_3:67318125-67318144 | Msa0657570:intron | 30.0% | |
| TTGTATTCTTCAGCTAAAGA+AGG | + | chr4_3:67318215-67318234 | None:intergenic | 30.0% | |
| TAGCTGAAGAATACAATTCT+TGG | - | chr4_3:67318219-67318238 | Msa0657570:intron | 30.0% | |
| AAACTGTTAAGAAACTTGCA+AGG | - | chr4_3:67318654-67318673 | Msa0657570:intron | 30.0% | |
| TTGGATGAACTATATTATGC+TGG | - | chr4_3:67318837-67318856 | Msa0657570:intron | 30.0% | |
| ! | TTGTATTTGGACTCTTTTGT+TGG | + | chr4_3:67318888-67318907 | None:intergenic | 30.0% |
| TTTGTAGAATAACAAAGCAG+AGG | - | chr4_3:67319044-67319063 | Msa0657570:CDS | 30.0% | |
| ATTTGTTCCCATGATAAATG+AGG | - | chr4_3:67319092-67319111 | Msa0657570:intron | 30.0% | |
| TGACTAACCTCATTTATCAT+GGG | + | chr4_3:67319102-67319121 | None:intergenic | 30.0% | |
| GTACACCTGAAAATTAACAA+AGG | + | chr4_3:67319210-67319229 | None:intergenic | 30.0% | |
| ! | CTTTAGATGTGTTGATGAAA+AGG | - | chr4_3:67319304-67319323 | Msa0657570:intron | 30.0% |
| TTGTTTATTGTACACAGAGA+TGG | - | chr4_3:67319397-67319416 | Msa0657570:CDS | 30.0% | |
| TGTTTATTGTACACAGAGAT+GGG | - | chr4_3:67319398-67319417 | Msa0657570:CDS | 30.0% | |
| !! | GAGGGAGTGTATATTTTTAA+TGG | - | chr4_3:67319531-67319550 | Msa0657570:intron | 30.0% |
| !! | GGAGTGTATATTTTTAATGG+TGG | - | chr4_3:67319534-67319553 | Msa0657570:intron | 30.0% |
| !! | GTGTATATTTTTAATGGTGG+GGG | - | chr4_3:67319537-67319556 | Msa0657570:intron | 30.0% |
| GTGTGATTTAATTAGGTCAA+AGG | - | chr4_3:67319559-67319578 | Msa0657570:intron | 30.0% | |
| TGTTTGATTGTGACAAATGA+AGG | + | chr4_3:67319756-67319775 | None:intergenic | 30.0% | |
| TATAAATATGCTACTGCTCA+TGG | - | chr4_3:67319824-67319843 | Msa0657570:intron | 30.0% | |
| CTATCATCACCAATATAAAC+AGG | + | chr4_3:67320061-67320080 | None:intergenic | 30.0% | |
| GAAATTATGCTTACCTCATT+AGG | + | chr4_3:67320347-67320366 | None:intergenic | 30.0% | |
| ! | CATGTATTTTATAACCAGTC+AGG | + | chr4_3:67320530-67320549 | None:intergenic | 30.0% |
| TAGCCAAGTAGTAATTAGTA+CGG | - | chr4_3:67320682-67320701 | Msa0657570:five_prime_UTR | 30.0% | |
| ! | CTGTGGGTTTGATTTATAGT+TGG | + | chr4_3:67317653-67317672 | None:intergenic | 35.0% |
| AAAGAGAGATAGGGAATCTT+TGG | + | chr4_3:67317737-67317756 | None:intergenic | 35.0% | |
| ATTGCAATGGAATGCAAAAG+AGG | + | chr4_3:67317782-67317801 | None:intergenic | 35.0% | |
| AGAAAATAGGTTAAGAGGTG+GGG | + | chr4_3:67317820-67317839 | None:intergenic | 35.0% | |
| CTAGAAAATAGGTTAAGAGG+TGG | + | chr4_3:67317822-67317841 | None:intergenic | 35.0% | |
| TTTCTTCATCACAAACCCTA+AGG | - | chr4_3:67317845-67317864 | Msa0657570:three_prime_UTR | 35.0% | |
| GAAGATGACTCAAAAGAATG+TGG | - | chr4_3:67317992-67318011 | Msa0657570:CDS | 35.0% | |
| TTCTTCAAAATTCTCCTCCT+TGG | + | chr4_3:67318110-67318129 | None:intergenic | 35.0% | |
| GAGGACAAAGAATCAATACA+TGG | - | chr4_3:67318144-67318163 | Msa0657570:CDS | 35.0% | |
| TCAAACATATCTAATGCCGA+TGG | + | chr4_3:67318425-67318444 | None:intergenic | 35.0% | |
| ACAAATTATGGATGCTGCAA+AGG | - | chr4_3:67318445-67318464 | Msa0657570:intron | 35.0% | |
| CAAATTATGGATGCTGCAAA+GGG | - | chr4_3:67318446-67318465 | Msa0657570:intron | 35.0% | |
| TTTCCTACTGCAATTGTTAC+TGG | - | chr4_3:67318680-67318699 | Msa0657570:intron | 35.0% | |
| ! | GGTGTACAATTTTGTTCGTT+TGG | - | chr4_3:67318818-67318837 | Msa0657570:intron | 35.0% |
| CTATATTATGCTGGAAGTCA+TGG | - | chr4_3:67318846-67318865 | Msa0657570:intron | 35.0% | |
| AGTCATGGCATGGATATTAA+AGG | - | chr4_3:67318861-67318880 | Msa0657570:intron | 35.0% | |
| GTCATGGCATGGATATTAAA+GGG | - | chr4_3:67318862-67318881 | Msa0657570:intron | 35.0% | |
| TATCATGGGAACAAATTCTC+TGG | + | chr4_3:67319088-67319107 | None:intergenic | 35.0% | |
| GTGACTAACCTCATTTATCA+TGG | + | chr4_3:67319103-67319122 | None:intergenic | 35.0% | |
| GAGAAAACAAAATCAACTCC+TGG | - | chr4_3:67319242-67319261 | Msa0657570:CDS | 35.0% | |
| ! | AACACATCTAAAGTGAACTG+AGG | + | chr4_3:67319297-67319316 | None:intergenic | 35.0% |
| AGGAAATACATCGTTACAGT+TGG | + | chr4_3:67320041-67320060 | None:intergenic | 35.0% | |
| TACCTTGAATGCATCTTCAT+CGG | + | chr4_3:67320086-67320105 | None:intergenic | 35.0% | |
| ! | AGAGACATAGATCAAGGTTT+TGG | - | chr4_3:67320266-67320285 | Msa0657570:CDS | 35.0% |
| TCTAGTCTCTAAGTTTCCAA+AGG | - | chr4_3:67320292-67320311 | Msa0657570:CDS | 35.0% | |
| AGCCAAGTAGTAATTAGTAC+GGG | - | chr4_3:67320683-67320702 | Msa0657570:five_prime_UTR | 35.0% | |
| CAGAATCACTTCATCTGATA+TGG | + | chr4_3:67320728-67320747 | None:intergenic | 35.0% | |
| TCAGATGAAGTGATTCTGAA+TGG | - | chr4_3:67320730-67320749 | Msa0657570:five_prime_UTR | 35.0% | |
| CAGATGAAGTGATTCTGAAT+GGG | - | chr4_3:67320731-67320750 | Msa0657570:five_prime_UTR | 35.0% | |
| GAAGAGGCAAAAGAGAGATA+GGG | + | chr4_3:67317746-67317765 | None:intergenic | 40.0% | |
| TGAAGAGGCAAAAGAGAGAT+AGG | + | chr4_3:67317747-67317766 | None:intergenic | 40.0% | |
| AGGAAGAAGGGAAATTGAAG+AGG | + | chr4_3:67317762-67317781 | None:intergenic | 40.0% | |
| GGAATGCAAAAGAGGAAGAA+GGG | + | chr4_3:67317774-67317793 | None:intergenic | 40.0% | |
| TGGAATGCAAAAGAGGAAGA+AGG | + | chr4_3:67317775-67317794 | None:intergenic | 40.0% | |
| GTGAGAAGTGGATATTGCAA+TGG | + | chr4_3:67317795-67317814 | None:intergenic | 40.0% | |
| GAAAATAGGTTAAGAGGTGG+GGG | + | chr4_3:67317819-67317838 | None:intergenic | 40.0% | |
| AAAACCGGAATGAATGGTAG+CGG | - | chr4_3:67318029-67318048 | Msa0657570:intron | 40.0% | |
| GTGGATACATTCACATTCCA+AGG | - | chr4_3:67318090-67318109 | Msa0657570:intron | 40.0% | |
| GATACATTCACATTCCAAGG+AGG | - | chr4_3:67318093-67318112 | Msa0657570:intron | 40.0% | |
| GGAGAAGATTTGACATGAGT+TGG | + | chr4_3:67318194-67318213 | None:intergenic | 40.0% | |
| TAACAGTGAGAACAGAGTGA+TGG | + | chr4_3:67318255-67318274 | None:intergenic | 40.0% | |
| ACATATCTAATGCCGATGGA+TGG | + | chr4_3:67318421-67318440 | None:intergenic | 40.0% | |
| TGGTACTTTGTCACCAATTG+TGG | - | chr4_3:67318499-67318518 | Msa0657570:intron | 40.0% | |
| CTTCCAGTAACAATTGCAGT+AGG | + | chr4_3:67318686-67318705 | None:intergenic | 40.0% | |
| ATTTGACCTATATAGTGCCG+TGG | - | chr4_3:67318969-67318988 | Msa0657570:intron | 40.0% | |
| CTTATTCCACGGCACTATAT+AGG | + | chr4_3:67318978-67318997 | None:intergenic | 40.0% | |
| CTATATAGTGCCGTGGAATA+AGG | - | chr4_3:67318976-67318995 | Msa0657570:intron | 40.0% | |
| !! | TACACAGAGATGGGTTGAAT+TGG | - | chr4_3:67319407-67319426 | Msa0657570:CDS | 40.0% |
| ! | CTTCGGGTACTCTTTTAACA+CGG | + | chr4_3:67319448-67319467 | None:intergenic | 40.0% |
| AGGTCAAAGGTGATTATGAC+AGG | - | chr4_3:67319572-67319591 | Msa0657570:intron | 40.0% | |
| GGTCAAAGGTGATTATGACA+GGG | - | chr4_3:67319573-67319592 | Msa0657570:intron | 40.0% | |
| AGATTCGTCCCGCAATTAAA+TGG | - | chr4_3:67319658-67319677 | Msa0657570:intron | 40.0% | |
| GATTCGTCCCGCAATTAAAT+GGG | - | chr4_3:67319659-67319678 | Msa0657570:intron | 40.0% | |
| AATTAAATGGGACAAGGGCA+AGG | - | chr4_3:67319671-67319690 | Msa0657570:intron | 40.0% | |
| TGACCCTAGCAAAAATTCGA+GGG | + | chr4_3:67319697-67319716 | None:intergenic | 40.0% | |
| ! | GAATTTTTGCTAGGGTCACT+TGG | - | chr4_3:67319699-67319718 | Msa0657570:intron | 40.0% |
| ! | TACTGCTCATGGTGATTTGT+TGG | - | chr4_3:67319835-67319854 | Msa0657570:intron | 40.0% |
| ATGAGTAAACTAATCCCACG+AGG | + | chr4_3:67319918-67319937 | None:intergenic | 40.0% | |
| AACCGATGAAGATGCATTCA+AGG | - | chr4_3:67320081-67320100 | Msa0657570:intron | 40.0% | |
| CTCTTTACAAGAGCCTAATG+AGG | - | chr4_3:67320331-67320350 | Msa0657570:CDS | 40.0% | |
| TATGGATTTCCTTCAGCGTT+TGG | - | chr4_3:67320442-67320461 | Msa0657570:CDS | 40.0% | |
| GCCAAGTAGTAATTAGTACG+GGG | - | chr4_3:67320684-67320703 | Msa0657570:five_prime_UTR | 40.0% | |
| CCAAGTAGTAATTAGTACGG+GGG | - | chr4_3:67320685-67320704 | Msa0657570:five_prime_UTR | 40.0% | |
| CAAGTAGTAATTAGTACGGG+GGG | - | chr4_3:67320686-67320705 | Msa0657570:five_prime_UTR | 40.0% | |
| ! | GTTGTGTCTGAGACCAAAAC+CGG | - | chr4_3:67318014-67318033 | Msa0657570:CDS | 45.0% |
| GAGACCAAAACCGGAATGAA+TGG | - | chr4_3:67318023-67318042 | Msa0657570:CDS | 45.0% | |
| ! | GCTACCATTCATTCCGGTTT+TGG | + | chr4_3:67318030-67318049 | None:intergenic | 45.0% |
| AGTACCGCTACCATTCATTC+CGG | + | chr4_3:67318036-67318055 | None:intergenic | 45.0% | |
| GGAATGTGAATGTATCCACC+CGG | + | chr4_3:67318089-67318108 | None:intergenic | 45.0% | |
| ! | TTCAGACATGAAAGCACGGT+CGG | + | chr4_3:67318531-67318550 | None:intergenic | 45.0% |
| CCGATTCAGACATGAAAGCA+CGG | + | chr4_3:67318535-67318554 | None:intergenic | 45.0% | |
| CCGTGCTTTCATGTCTGAAT+CGG | - | chr4_3:67318532-67318551 | Msa0657570:intron | 45.0% | |
| TTATGCTGGAAGTCATGGCA+TGG | - | chr4_3:67318851-67318870 | Msa0657570:intron | 45.0% | |
| ATGGGAACAAATTCTCTGGC+AGG | + | chr4_3:67319084-67319103 | None:intergenic | 45.0% | |
| GAACTTGTGGTTCTCAACTC+TGG | + | chr4_3:67319270-67319289 | None:intergenic | 45.0% | |
| CTTGTGTTAGACGAAGCTTC+GGG | + | chr4_3:67319464-67319483 | None:intergenic | 45.0% | |
| CCTTGTGTTAGACGAAGCTT+CGG | + | chr4_3:67319465-67319484 | None:intergenic | 45.0% | |
| AGCTTCGTCTAACACAAGGA+AGG | - | chr4_3:67319466-67319485 | Msa0657570:intron | 45.0% | |
| TCGTCTAACACAAGGAAGGA+AGG | - | chr4_3:67319470-67319489 | Msa0657570:intron | 45.0% | |
| TCTAACACAAGGAAGGAAGG+TGG | - | chr4_3:67319473-67319492 | Msa0657570:intron | 45.0% | |
| CTAACACAAGGAAGGAAGGT+GGG | - | chr4_3:67319474-67319493 | Msa0657570:intron | 45.0% | |
| ! | GGTGGGGGTGTGATTTAATT+AGG | - | chr4_3:67319552-67319571 | Msa0657570:intron | 45.0% |
| TCCCGCAATTAAATGGGACA+AGG | - | chr4_3:67319665-67319684 | Msa0657570:intron | 45.0% | |
| CCCTTGTCCCATTTAATTGC+GGG | + | chr4_3:67319669-67319688 | None:intergenic | 45.0% | |
| CCCGCAATTAAATGGGACAA+GGG | - | chr4_3:67319666-67319685 | Msa0657570:intron | 45.0% | |
| GCCCTTGTCCCATTTAATTG+CGG | + | chr4_3:67319670-67319689 | None:intergenic | 45.0% | |
| ! | AAGGCCCTCGAATTTTTGCT+AGG | - | chr4_3:67319690-67319709 | Msa0657570:intron | 45.0% |
| ! | AGGCCCTCGAATTTTTGCTA+GGG | - | chr4_3:67319691-67319710 | Msa0657570:intron | 45.0% |
| GTGACCCTAGCAAAAATTCG+AGG | + | chr4_3:67319698-67319717 | None:intergenic | 45.0% | |
| AAACTAATCCCACGAGGTGT+AGG | + | chr4_3:67319912-67319931 | None:intergenic | 45.0% | |
| ATCTCCAAGATCACGCTCTA+GGG | - | chr4_3:67320481-67320500 | Msa0657570:intron | 45.0% | |
| AGACATTGTACATCCCTGAC+TGG | - | chr4_3:67320513-67320532 | Msa0657570:intron | 45.0% | |
| CCCCCGTACTAATTACTACT+TGG | + | chr4_3:67320688-67320707 | None:intergenic | 45.0% | |
| !!! | TTTTTAAAAAAAAGAAAATT+TGG | + | chr4_3:67319153-67319172 | None:intergenic | 5.0% |
| !!! | TTAATTTTATTTTTATGTTT+TGG | - | chr4_3:67319729-67319748 | Msa0657570:intron | 5.0% |
| GGGAAGAAGACATAGGCTGT+GGG | + | chr4_3:67317669-67317688 | None:intergenic | 50.0% | |
| GAAGTGGGGGAAGAAGACAT+AGG | + | chr4_3:67317676-67317695 | None:intergenic | 50.0% | |
| AGAGCAAGAGAGTGGAAGTG+GGG | + | chr4_3:67317690-67317709 | None:intergenic | 50.0% | |
| GAGAGCAAGAGAGTGGAAGT+GGG | + | chr4_3:67317691-67317710 | None:intergenic | 50.0% | |
| AGAGAGCAAGAGAGTGGAAG+TGG | + | chr4_3:67317692-67317711 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGCAAGAGAG+TGG | + | chr4_3:67317698-67317717 | None:intergenic | 50.0% | |
| !! | TGGTAGCGGTACTATTACCG+TGG | - | chr4_3:67318043-67318062 | Msa0657570:intron | 50.0% |
| ! | TCAGACATGAAAGCACGGTC+GGG | + | chr4_3:67318530-67318549 | None:intergenic | 50.0% |
| GAACTGAGGTGCAGAACTTG+TGG | + | chr4_3:67319283-67319302 | None:intergenic | 50.0% | |
| CCGAAGCTTCGTCTAACACA+AGG | - | chr4_3:67319462-67319481 | Msa0657570:intron | 50.0% | |
| TATGCAGCAGCTGTGTCCTT+TGG | + | chr4_3:67320311-67320330 | None:intergenic | 50.0% | |
| GGATTTCCTTCAGCGTTTGG+TGG | - | chr4_3:67320445-67320464 | Msa0657570:CDS | 50.0% | |
| CATCTCCAAGATCACGCTCT+AGG | - | chr4_3:67320480-67320499 | Msa0657570:intron | 50.0% | |
| TACACCCTAGAGCGTGATCT+TGG | + | chr4_3:67320488-67320507 | None:intergenic | 50.0% | |
| GGGGAAGAAGACATAGGCTG+TGG | + | chr4_3:67317670-67317689 | None:intergenic | 55.0% | |
| GAGCAAGAGAGTGGAAGTGG+GGG | + | chr4_3:67317689-67317708 | None:intergenic | 55.0% | |
| TCGACAGCTTCGCCATCCAT+CGG | - | chr4_3:67318406-67318425 | Msa0657570:CDS | 55.0% | |
| ! | CAGACATGAAAGCACGGTCG+GGG | + | chr4_3:67318529-67318548 | None:intergenic | 55.0% |
| TGGTTCTCAACTCTGGCACC+AGG | + | chr4_3:67319263-67319282 | None:intergenic | 55.0% | |
| CAAGGAAGGAAGGTGGGTCA+TGG | - | chr4_3:67319480-67319499 | Msa0657570:intron | 55.0% | |
| ! | TCCTTCAGCGTTTGGTGGAG+TGG | - | chr4_3:67320450-67320469 | Msa0657570:CDS | 55.0% |
| TCCACTCCACCAAACGCTGA+AGG | + | chr4_3:67320454-67320473 | None:intergenic | 55.0% | |
| ! | AGAGGTGGGGGTGTGAGAAG+TGG | + | chr4_3:67317807-67317826 | None:intergenic | 60.0% |
| TACCGTGGCACAGAAGCCAC+CGG | - | chr4_3:67318058-67318077 | Msa0657570:intron | 60.0% | |
| !! | ATGTATCCACCCGGTGCTGC+CGG | + | chr4_3:67318080-67318099 | None:intergenic | 60.0% |
| CGGTCGGGGTCATCCACAAT+TGG | + | chr4_3:67318515-67318534 | None:intergenic | 60.0% | |
| AGGGTGACACCTACACCTCG+TGG | - | chr4_3:67319900-67319919 | Msa0657570:intron | 60.0% | |
| GGGTGACACCTACACCTCGT+GGG | - | chr4_3:67319901-67319920 | Msa0657570:intron | 60.0% | |
| TGCCGGTGGCTTCTGTGCCA+CGG | + | chr4_3:67318063-67318082 | None:intergenic | 65.0% | |
| ACAGAAGCCACCGGCAGCAC+CGG | - | chr4_3:67318067-67318086 | Msa0657570:intron | 65.0% | |
| CAGAAGCCACCGGCAGCACC+GGG | - | chr4_3:67318068-67318087 | Msa0657570:intron | 70.0% | |
| !! | TATCCACCCGGTGCTGCCGG+TGG | + | chr4_3:67318077-67318096 | None:intergenic | 70.0% |
| ! | AAGCCACCGGCAGCACCGGG+TGG | - | chr4_3:67318071-67318090 | Msa0657570:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 67317621 | 67320864 | 67317621 | ID=Msa0657570;Name=Msa0657570 |
| chr4_3 | mRNA | 67317621 | 67320864 | 67317621 | ID=Msa0657570-mRNA-1;Parent=Msa0657570;Name=Msa0657570-mRNA-1;_AED=0.18;_eAED=0.18;_QI=251|1|1|1|0.90|0.83|12|356|366 |
| chr4_3 | exon | 67317621 | 67318045 | 67317621 | ID=Msa0657570-mRNA-1:exon:19395;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67318133 | 67318225 | 67318133 | ID=Msa0657570-mRNA-1:exon:19394;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67318383 | 67318453 | 67318383 | ID=Msa0657570-mRNA-1:exon:19393;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67318765 | 67318834 | 67318765 | ID=Msa0657570-mRNA-1:exon:19392;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67318994 | 67319071 | 67318994 | ID=Msa0657570-mRNA-1:exon:19391;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67319160 | 67319261 | 67319160 | ID=Msa0657570-mRNA-1:exon:19390;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67319372 | 67319434 | 67319372 | ID=Msa0657570-mRNA-1:exon:19389;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67319574 | 67319666 | 67319574 | ID=Msa0657570-mRNA-1:exon:19388;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67319767 | 67319838 | 67319767 | ID=Msa0657570-mRNA-1:exon:19387;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67319932 | 67320072 | 67319932 | ID=Msa0657570-mRNA-1:exon:19386;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67320241 | 67320494 | 67320241 | ID=Msa0657570-mRNA-1:exon:19385;Parent=Msa0657570-mRNA-1 |
| chr4_3 | exon | 67320619 | 67320864 | 67320619 | ID=Msa0657570-mRNA-1:exon:19384;Parent=Msa0657570-mRNA-1 |
| chr4_3 | five_prime_UTR | 67320619 | 67320864 | 67320619 | ID=Msa0657570-mRNA-1:five_prime_utr;Parent=Msa0657570-mRNA-1 |
| chr4_3 | five_prime_UTR | 67320490 | 67320494 | 67320490 | ID=Msa0657570-mRNA-1:five_prime_utr;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67320241 | 67320489 | 67320241 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67319932 | 67320072 | 67319932 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67319767 | 67319838 | 67319767 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67319574 | 67319666 | 67319574 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67319372 | 67319434 | 67319372 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67319160 | 67319261 | 67319160 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67318994 | 67319071 | 67318994 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67318765 | 67318834 | 67318765 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67318383 | 67318453 | 67318383 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67318133 | 67318225 | 67318133 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | CDS | 67317977 | 67318045 | 67317977 | ID=Msa0657570-mRNA-1:cds;Parent=Msa0657570-mRNA-1 |
| chr4_3 | three_prime_UTR | 67317621 | 67317976 | 67317621 | ID=Msa0657570-mRNA-1:three_prime_utr;Parent=Msa0657570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
