Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704310 | XP_013446829.1 | 99.180 | 366 | 3 | 0 | 1 | 366 | 1 | 366 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704310 | sp|Q5HZ05|TPPJ_ARATH | 70.811 | 370 | 92 | 6 | 1 | 357 | 1 | 367 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704310 | A0A072TUP0 | 99.180 | 366 | 3 | 0 | 1 | 366 | 1 | 366 | 0.0 | 761 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657570 | Msa0704310 | 0.924940 | 3.593145e-90 | -8.615850e-47 |
| Msa0704300 | Msa0704310 | 0.853432 | 2.399148e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704310 | MtrunA17_Chr8g0382441 | 99.180 | 366 | 3 | 0 | 1 | 366 | 1 | 366 | 0.0 | 761 |
| Msa0704310 | MtrunA17_Chr3g0115661 | 62.259 | 363 | 126 | 3 | 3 | 359 | 4 | 361 | 5.14e-162 | 458 |
| Msa0704310 | MtrunA17_Chr5g0425711 | 67.093 | 313 | 101 | 2 | 50 | 362 | 66 | 376 | 4.71e-153 | 436 |
| Msa0704310 | MtrunA17_Chr4g0056481 | 52.646 | 378 | 156 | 4 | 8 | 365 | 16 | 390 | 3.36e-139 | 401 |
| Msa0704310 | MtrunA17_Chr4g0018441 | 53.390 | 354 | 137 | 4 | 32 | 363 | 39 | 386 | 2.51e-131 | 381 |
| Msa0704310 | MtrunA17_Chr3g0079281 | 52.762 | 362 | 152 | 4 | 17 | 359 | 25 | 386 | 1.42e-130 | 379 |
| Msa0704310 | MtrunA17_Chr3g0126491 | 52.759 | 290 | 127 | 2 | 79 | 358 | 66 | 355 | 5.44e-109 | 323 |
| Msa0704310 | MtrunA17_Chr8g0347141 | 47.797 | 295 | 144 | 2 | 74 | 358 | 17 | 311 | 2.98e-102 | 304 |
| Msa0704310 | MtrunA17_Chr4g0018781 | 49.398 | 83 | 41 | 1 | 74 | 155 | 22 | 104 | 3.11e-18 | 79.3 |
| Msa0704310 | MtrunA17_Chr4g0018791 | 51.613 | 62 | 29 | 1 | 240 | 300 | 2 | 63 | 7.63e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704310 | AT5G65140.1 | 70.811 | 370 | 92 | 6 | 1 | 357 | 1 | 367 | 0.0 | 535 |
| Msa0704310 | AT5G10100.1 | 69.315 | 365 | 104 | 4 | 4 | 361 | 16 | 379 | 0.0 | 527 |
| Msa0704310 | AT5G10100.3 | 69.315 | 365 | 104 | 4 | 4 | 361 | 5 | 368 | 0.0 | 526 |
| Msa0704310 | AT5G10100.2 | 68.966 | 348 | 100 | 4 | 4 | 344 | 5 | 351 | 4.29e-178 | 499 |
| Msa0704310 | AT4G39770.1 | 66.387 | 357 | 100 | 4 | 3 | 357 | 6 | 344 | 3.31e-174 | 488 |
| Msa0704310 | AT5G10100.4 | 64.658 | 365 | 101 | 5 | 4 | 361 | 16 | 359 | 1.45e-169 | 477 |
| Msa0704310 | AT2G22190.1 | 69.876 | 322 | 90 | 3 | 38 | 358 | 35 | 350 | 4.92e-167 | 471 |
| Msa0704310 | AT5G65140.3 | 70.245 | 326 | 81 | 6 | 1 | 313 | 1 | 323 | 9.64e-167 | 469 |
| Msa0704310 | AT4G39770.2 | 65.797 | 345 | 98 | 4 | 3 | 345 | 6 | 332 | 1.55e-165 | 466 |
| Msa0704310 | AT1G35910.1 | 64.721 | 377 | 111 | 7 | 1 | 363 | 1 | 369 | 5.36e-164 | 463 |
| Msa0704310 | AT2G22190.2 | 69.677 | 310 | 87 | 3 | 38 | 346 | 35 | 338 | 1.42e-159 | 451 |
| Msa0704310 | AT1G78090.1 | 61.662 | 373 | 126 | 6 | 1 | 359 | 1 | 370 | 5.30e-156 | 443 |
| Msa0704310 | AT1G78090.2 | 61.838 | 359 | 120 | 6 | 1 | 345 | 1 | 356 | 2.40e-149 | 426 |
| Msa0704310 | AT5G65140.2 | 68.647 | 303 | 79 | 6 | 1 | 290 | 1 | 300 | 1.39e-148 | 422 |
| Msa0704310 | AT1G22210.1 | 61.300 | 323 | 113 | 3 | 43 | 359 | 1 | 317 | 7.94e-138 | 395 |
| Msa0704310 | AT5G51460.2 | 54.545 | 341 | 132 | 6 | 35 | 358 | 48 | 382 | 3.19e-129 | 375 |
| Msa0704310 | AT5G51460.4 | 54.545 | 341 | 132 | 6 | 35 | 358 | 48 | 382 | 3.19e-129 | 375 |
| Msa0704310 | AT5G51460.1 | 54.386 | 342 | 132 | 7 | 35 | 358 | 48 | 383 | 1.55e-127 | 371 |
| Msa0704310 | AT5G51460.5 | 54.386 | 342 | 132 | 7 | 35 | 358 | 48 | 383 | 1.55e-127 | 371 |
| Msa0704310 | AT5G51460.3 | 54.386 | 342 | 132 | 7 | 35 | 358 | 48 | 383 | 1.55e-127 | 371 |
| Msa0704310 | AT4G22590.1 | 53.198 | 344 | 141 | 4 | 31 | 357 | 29 | 369 | 6.62e-124 | 362 |
| Msa0704310 | AT4G12430.1 | 56.522 | 322 | 127 | 3 | 53 | 362 | 45 | 365 | 2.96e-120 | 352 |
Find 121 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACTCACTTTGTTGTATT+TGG | 0.157241 | 4_4:-76784796 | None:intergenic |
| AGATATGTTTGAACAAATTA+TGG | 0.199793 | 4_4:+76784329 | Msa0704310:CDS |
| AGATTCGTCCCGCAATTAAA+TGG | 0.230940 | 4_4:+76785552 | Msa0704310:CDS |
| GATTATGATTAAATATTATA+AGG | 0.237519 | 4_4:+76786668 | Msa0704310:three_prime_UTR |
| GCTACCATTCATTCCGGTTT+TGG | 0.246623 | 4_4:-76783907 | None:intergenic |
| TAGCTGAAGAATACAATTCT+TGG | 0.262718 | 4_4:+76784099 | Msa0704310:CDS |
| TTTCCTACTGCAATTGTTAC+TGG | 0.265079 | 4_4:+76784576 | Msa0704310:CDS |
| CAGAATCACTTCATCTGATA+TGG | 0.267739 | 4_4:-76786620 | None:intergenic |
| ATCAAAAGATATGTATTTAT+AGG | 0.275040 | 4_4:+76786697 | Msa0704310:three_prime_UTR |
| TGAAGAGGCAAAAGAGAGAT+AGG | 0.276519 | 4_4:-76783624 | None:intergenic |
| AGAGACATAGATCAAGGTTT+TGG | 0.278672 | 4_4:+76786160 | Msa0704310:CDS |
| CCCTTGTCCCATTTAATTGC+GGG | 0.298244 | 4_4:-76785560 | None:intergenic |
| AAAGAGAGATAGGGAATCTT+TGG | 0.316424 | 4_4:-76783614 | None:intergenic |
| AGTCATGGCATGGATATTAA+AGG | 0.325492 | 4_4:+76784759 | Msa0704310:CDS |
| GAAATTATGCTTACCTCATT+AGG | 0.325958 | 4_4:-76786238 | None:intergenic |
| GATGTATTTCCTGTTTATAT+TGG | 0.349971 | 4_4:+76785943 | Msa0704310:CDS |
| TTCTTCAAAATTCTCCTCCT+TGG | 0.362292 | 4_4:-76783987 | None:intergenic |
| TGAAGAAAATACTAGAAAAT+AGG | 0.362475 | 4_4:-76783710 | None:intergenic |
| GGAGAAGATTTGACATGAGT+TGG | 0.374230 | 4_4:-76784071 | None:intergenic |
| AATATTTAATCATAATCATA+AGG | 0.378461 | 4_4:-76786662 | None:intergenic |
| TATGGATTTCCTTCAGCGTT+TGG | 0.380303 | 4_4:+76786336 | Msa0704310:CDS |
| TTGAAGAATCTTGAAATCAA+TGG | 0.381109 | 4_4:+76784002 | Msa0704310:CDS |
| CTTTAGATGTGTTGATGAAA+AGG | 0.396311 | 4_4:+76785198 | Msa0704310:CDS |
| TACACCCTAGAGCGTGATCT+TGG | 0.396817 | 4_4:-76786379 | None:intergenic |
| CCTTGTGTTAGACGAAGCTT+CGG | 0.397569 | 4_4:-76785356 | None:intergenic |
| TACACAGAGATGGGTTGAAT+TGG | 0.408365 | 4_4:+76785301 | Msa0704310:intron |
| AGTACCGCTACCATTCATTC+CGG | 0.416696 | 4_4:-76783913 | None:intergenic |
| TGCTTATTAAGTACTTAGTA+TGG | 0.421067 | 4_4:+76786735 | Msa0704310:three_prime_UTR |
| CTATCATCACCAATATAAAC+AGG | 0.428430 | 4_4:-76785952 | None:intergenic |
| TATGCAGCAGCTGTGTCCTT+TGG | 0.429413 | 4_4:-76786202 | None:intergenic |
| CTTGTGTTAGACGAAGCTTC+GGG | 0.443939 | 4_4:-76785355 | None:intergenic |
| CTGTGGGTTTGATTTATAGT+TGG | 0.448630 | 4_4:-76783518 | None:intergenic |
| GTGACTAACCTCATTTATCA+TGG | 0.449499 | 4_4:-76784995 | None:intergenic |
| ATACTAGAAAATAGGTTAAG+AGG | 0.451702 | 4_4:-76783702 | None:intergenic |
| CCGTGCTTTCATGTCTGAAT+CGG | 0.453757 | 4_4:+76784428 | Msa0704310:CDS |
| AACCGATGAAGATGCATTCA+AGG | 0.456478 | 4_4:+76785975 | Msa0704310:CDS |
| ACAGAAGCCACCGGCAGCAC+CGG | 0.461102 | 4_4:+76783947 | Msa0704310:CDS |
| TATCATGGGAACAAATTCTC+TGG | 0.470973 | 4_4:-76784980 | None:intergenic |
| TCAGACATGAAAGCACGGTC+GGG | 0.472310 | 4_4:-76784423 | None:intergenic |
| CTATATTATGCTGGAAGTCA+TGG | 0.475549 | 4_4:+76784744 | Msa0704310:CDS |
| ACAAATTATGGATGCTGCAA+AGG | 0.481613 | 4_4:+76784341 | Msa0704310:CDS |
| TCCTTCAGCGTTTGGTGGAG+TGG | 0.484492 | 4_4:+76786344 | Msa0704310:CDS |
| GCCCTTGTCCCATTTAATTG+CGG | 0.492631 | 4_4:-76785561 | None:intergenic |
| GATTCGTCCCGCAATTAAAT+GGG | 0.493006 | 4_4:+76785553 | Msa0704310:CDS |
| ATATTTAATCATAATCATAA+GGG | 0.493009 | 4_4:-76786661 | None:intergenic |
| GTCATGGCATGGATATTAAA+GGG | 0.494286 | 4_4:+76784760 | Msa0704310:CDS |
| TTGGATGAACTATATTATGC+TGG | 0.495236 | 4_4:+76784735 | Msa0704310:CDS |
| TCAGATGAAGTGATTCTGAA+TGG | 0.496665 | 4_4:+76786625 | Msa0704310:three_prime_UTR |
| CGGTCGGGGTCATCCACAAT+TGG | 0.498926 | 4_4:-76784408 | None:intergenic |
| CATCTCCAAGATCACGCTCT+AGG | 0.500203 | 4_4:+76786374 | Msa0704310:CDS |
| TTGTATTCTTCAGCTAAAGA+AGG | 0.501331 | 4_4:-76784092 | None:intergenic |
| TAGAAAATAGGTTAAGAGGT+GGG | 0.502439 | 4_4:-76783698 | None:intergenic |
| AGCCAAGTAGTAATTAGTAC+GGG | 0.502654 | 4_4:+76786578 | Msa0704310:three_prime_UTR |
| GAACTTGTGGTTCTCAACTC+TGG | 0.503615 | 4_4:-76785161 | None:intergenic |
| AGAAAATAGGTTAAGAGGTG+GGG | 0.509951 | 4_4:-76783697 | None:intergenic |
| GAGACCAAAACCGGAATGAA+TGG | 0.513958 | 4_4:+76783903 | Msa0704310:CDS |
| ATTTGTTCCCATGATAAATG+AGG | 0.514951 | 4_4:+76784987 | Msa0704310:CDS |
| CAGAAGCCACCGGCAGCACC+GGG | 0.515096 | 4_4:+76783948 | Msa0704310:CDS |
| ATGTATCCACCCGGTGCTGC+CGG | 0.516770 | 4_4:-76783957 | None:intergenic |
| ATCTCCAAGATCACGCTCTA+GGG | 0.517903 | 4_4:+76786375 | Msa0704310:CDS |
| TGGTTCTCAACTCTGGCACC+AGG | 0.519019 | 4_4:-76785154 | None:intergenic |
| GAAGAGGCAAAAGAGAGATA+GGG | 0.522287 | 4_4:-76783623 | None:intergenic |
| CAAATTATGGATGCTGCAAA+GGG | 0.526052 | 4_4:+76784342 | Msa0704310:CDS |
| TGCCGGTGGCTTCTGTGCCA+CGG | 0.527210 | 4_4:-76783940 | None:intergenic |
| AAATTAAGAGACATAGATCA+AGG | 0.529862 | 4_4:+76786154 | Msa0704310:CDS |
| CAGATGAAGTGATTCTGAAT+GGG | 0.530345 | 4_4:+76786626 | Msa0704310:three_prime_UTR |
| TAGCCAAGTAGTAATTAGTA+CGG | 0.530397 | 4_4:+76786577 | Msa0704310:three_prime_UTR |
| TTTCTTCATCACAAACCCTA+AGG | 0.530816 | 4_4:+76783725 | Msa0704310:five_prime_UTR |
| TCGACAGCTTCGCCATCCAT+CGG | 0.532132 | 4_4:+76784302 | Msa0704310:intron |
| AATTAAATGGGACAAGGGCA+AGG | 0.533517 | 4_4:+76785565 | Msa0704310:CDS |
| ATGGGAACAAATTCTCTGGC+AGG | 0.537434 | 4_4:-76784976 | None:intergenic |
| TACCTTGAATGCATCTTCAT+CGG | 0.539742 | 4_4:-76785977 | None:intergenic |
| GGATTTCCTTCAGCGTTTGG+TGG | 0.542635 | 4_4:+76786339 | Msa0704310:CDS |
| TTCAGACATGAAAGCACGGT+CGG | 0.542972 | 4_4:-76784424 | None:intergenic |
| AGGAAATACATCGTTACAGT+TGG | 0.546340 | 4_4:-76785932 | None:intergenic |
| TCCACTCCACCAAACGCTGA+AGG | 0.548294 | 4_4:-76786345 | None:intergenic |
| GGAATGCAAAAGAGGAAGAA+GGG | 0.548624 | 4_4:-76783651 | None:intergenic |
| TGGAATGCAAAAGAGGAAGA+AGG | 0.550220 | 4_4:-76783652 | None:intergenic |
| ATTGCAATGGAATGCAAAAG+AGG | 0.553225 | 4_4:-76783659 | None:intergenic |
| GAGAAAACAAAATCAACTCC+TGG | 0.555984 | 4_4:+76785136 | Msa0704310:CDS |
| TATCCACCCGGTGCTGCCGG+TGG | 0.562450 | 4_4:-76783954 | None:intergenic |
| GTGGATACATTCACATTCCA+AGG | 0.565455 | 4_4:+76783970 | Msa0704310:CDS |
| GTTGTGTCTGAGACCAAAAC+CGG | 0.569541 | 4_4:+76783894 | Msa0704310:CDS |
| GAACAGAGGTGCAGAACTTG+TGG | 0.573976 | 4_4:-76785174 | None:intergenic |
| AGGAAGAAGGGAAATTGAAG+AGG | 0.574994 | 4_4:-76783639 | None:intergenic |
| GAAAATAGGTTAAGAGGTGG+GGG | 0.578509 | 4_4:-76783696 | None:intergenic |
| TGGTACCTTGTCACCAATTG+TGG | 0.582481 | 4_4:+76784395 | Msa0704310:CDS |
| ACATATCTAATGCCGATGGA+TGG | 0.584345 | 4_4:-76784314 | None:intergenic |
| CTCTTTACAAGAGCCTAATG+AGG | 0.589522 | 4_4:+76786225 | Msa0704310:CDS |
| TCTAGTCTCTAAGTTTCCAA+AGG | 0.593019 | 4_4:+76786186 | Msa0704310:CDS |
| AAGAATCTTGAAATCAATGG+AGG | 0.594315 | 4_4:+76784005 | Msa0704310:CDS |
| TCCCGCAATTAAATGGGACA+AGG | 0.596250 | 4_4:+76785559 | Msa0704310:CDS |
| TACCGTGGCACAGAAGCCAC+CGG | 0.596430 | 4_4:+76783938 | Msa0704310:CDS |
| TCGTCTAACACAAGGAAGGA+AGG | 0.605150 | 4_4:+76785364 | Msa0704310:CDS |
| TGACTAACCTCATTTATCAT+GGG | 0.605779 | 4_4:-76784994 | None:intergenic |
| AGACATTGTACATCCCTGAC+TGG | 0.617191 | 4_4:+76786407 | Msa0704310:three_prime_UTR |
| CTAGAAAATAGGTTAAGAGG+TGG | 0.619174 | 4_4:-76783699 | None:intergenic |
| CAGACATGAAAGCACGGTCG+GGG | 0.619472 | 4_4:-76784422 | None:intergenic |
| TTATGCTGGAAGTCATGGCA+TGG | 0.621883 | 4_4:+76784749 | Msa0704310:CDS |
| CTTCCAGTAACAATTGCAGT+AGG | 0.624355 | 4_4:-76784579 | None:intergenic |
| TCAAACATATCTAATGCCGA+TGG | 0.625537 | 4_4:-76784318 | None:intergenic |
| GAGGACAAAGAATCAATACA+TGG | 0.625642 | 4_4:+76784024 | Msa0704310:CDS |
| GTGAGAAGTGGATATTGCAA+TGG | 0.629137 | 4_4:-76783672 | None:intergenic |
| GTCATCCACAATTGGTGACA+AGG | 0.630443 | 4_4:-76784400 | None:intergenic |
| AAGCCACCGGCAGCACCGGG+TGG | 0.632503 | 4_4:+76783951 | Msa0704310:CDS |
| CCGAAGCTTCGTCTAACACA+AGG | 0.637863 | 4_4:+76785356 | Msa0704310:CDS |
| TTTGTAGAATAACAAAGCAG+AGG | 0.655035 | 4_4:+76784939 | Msa0704310:intron |
| CCCGCAATTAAATGGGACAA+GGG | 0.655310 | 4_4:+76785560 | Msa0704310:CDS |
| CAAGTAGTAATTAGTACGGG+GGG | 0.655720 | 4_4:+76786581 | Msa0704310:three_prime_UTR |
| AGCTTCGTCTAACACAAGGA+AGG | 0.657256 | 4_4:+76785360 | Msa0704310:CDS |
| CCAAGTAGTAATTAGTACGG+GGG | 0.657430 | 4_4:+76786580 | Msa0704310:three_prime_UTR |
| AAAACCGGAATGAATGGTAG+CGG | 0.657999 | 4_4:+76783909 | Msa0704310:CDS |
| TGGTAGCGGTACTATTACCG+TGG | 0.662829 | 4_4:+76783923 | Msa0704310:CDS |
| AAACTGTTAAGAAACTTGCA+AGG | 0.665580 | 4_4:+76784550 | Msa0704310:CDS |
| GAAGATGACTCAAAAGAATG+TGG | 0.668118 | 4_4:+76783872 | Msa0704310:exon |
| GCCAAGTAGTAATTAGTACG+GGG | 0.668981 | 4_4:+76786579 | Msa0704310:three_prime_UTR |
| CCGATTCAGACATGAAAGCA+CGG | 0.680880 | 4_4:-76784428 | None:intergenic |
| GGGAAGAAGACATAGGCTGT+GGG | 0.685814 | 4_4:-76783534 | None:intergenic |
| AACACATCTAAAGTGAACAG+AGG | 0.711327 | 4_4:-76785188 | None:intergenic |
| GGAATGTGAATGTATCCACC+CGG | 0.718303 | 4_4:-76783966 | None:intergenic |
| GATACATTCACATTCCAAGG+AGG | 0.760013 | 4_4:+76783973 | Msa0704310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAAAAAAAAAATT+TGG | - | chr4_4:76785048-76785067 | None:intergenic | 0.0% |
| !!! | ATTATAATCTTTTTTTAGTA+AGG | + | chr4_4:76783800-76783819 | Msa0704310:intron | 10.0% |
| !! | AAATTAACAGATTTATTTAA+AGG | - | chr4_4:76784486-76784505 | None:intergenic | 10.0% |
| !! | CAAAAAAGATAAAAAAAAAA+AGG | - | chr4_4:76784650-76784669 | None:intergenic | 10.0% |
| !!! | TTCTAAAAATTAATTAACAT+TGG | + | chr4_4:76784910-76784929 | Msa0704310:intron | 10.0% |
| !!! | TTTCTTTATAATCAATTTTT+TGG | + | chr4_4:76785403-76785422 | Msa0704310:intron | 10.0% |
| !! | TTCATTTAGAAATAAAAAAT+TGG | - | chr4_4:76786030-76786049 | None:intergenic | 10.0% |
| !! | TTATTAATTTAATATCATTC+AGG | + | chr4_4:76786312-76786331 | Msa0704310:intron | 10.0% |
| !! | ATATTTAATCATAATCATAA+GGG | - | chr4_4:76786664-76786683 | None:intergenic | 10.0% |
| !! | AATATTTAATCATAATCATA+AGG | - | chr4_4:76786665-76786684 | None:intergenic | 10.0% |
| !! | GATTATGATTAAATATTATA+AGG | + | chr4_4:76786668-76786687 | Msa0704310:three_prime_UTR | 10.0% |
| !! | TGTGATATTAATATATTGTT+TGG | + | chr4_4:76783823-76783842 | Msa0704310:intron | 15.0% |
| !! | ATATTAATATATTGTTTGGT+TGG | + | chr4_4:76783827-76783846 | Msa0704310:intron | 15.0% |
| !! | TATTAATATATTGTTTGGTT+GGG | + | chr4_4:76783828-76783847 | Msa0704310:intron | 15.0% |
| !! | AACAACACATATAAATAATA+AGG | - | chr4_4:76784278-76784297 | None:intergenic | 15.0% |
| !! | AAATTAATTAACATTGGTAA+TGG | + | chr4_4:76784916-76784935 | Msa0704310:intron | 15.0% |
| !!! | TTTATAATCAATTTTTTGGA+GGG | + | chr4_4:76785407-76785426 | Msa0704310:intron | 15.0% |
| !! | ATTATTACAAAGAATTAAGA+GGG | + | chr4_4:76785775-76785794 | Msa0704310:intron | 15.0% |
| !! | TTTATTAGTTAGAAAATTGA+TGG | - | chr4_4:76785893-76785912 | None:intergenic | 15.0% |
| !! | AAAAAAACAATTAAGATCAT+TGG | - | chr4_4:76786004-76786023 | None:intergenic | 15.0% |
| !! | ATTTAGAAATAAAAAATTGG+AGG | - | chr4_4:76786027-76786046 | None:intergenic | 15.0% |
| !! | ATCAGTAAAACATATATTTA+AGG | - | chr4_4:76786292-76786311 | None:intergenic | 15.0% |
| !! | AACATAGAAAGAAAAAAAAA+AGG | - | chr4_4:76786448-76786467 | None:intergenic | 15.0% |
| !! | ATCAAAAGATATGTATTTAT+AGG | + | chr4_4:76786697-76786716 | Msa0704310:three_prime_UTR | 15.0% |
| !! | TGAAGAAAATACTAGAAAAT+AGG | - | chr4_4:76783713-76783732 | None:intergenic | 20.0% |
| !! | TAAGAGTTTCAATGAAATTA+AGG | - | chr4_4:76783767-76783786 | None:intergenic | 20.0% |
| !! | AGATATGTTTGAACAAATTA+TGG | + | chr4_4:76784329-76784348 | Msa0704310:CDS | 20.0% |
| !!! | AAAACAGATTGTTATGTTTT+TGG | + | chr4_4:76784365-76784384 | Msa0704310:CDS | 20.0% |
| !!! | TTAGTCTTTGTTTATAAAAC+TGG | + | chr4_4:76784451-76784470 | Msa0704310:intron | 20.0% |
| !! | TTAAAAAATATACTGTACTG+TGG | - | chr4_4:76784845-76784864 | None:intergenic | 20.0% |
| !!! | TTTTACCTTTGTTAATTTTC+AGG | + | chr4_4:76785096-76785115 | Msa0704310:intron | 20.0% |
| !!! | CTTTATAATCAATTTTTTGG+AGG | + | chr4_4:76785406-76785425 | Msa0704310:intron | 20.0% |
| !! | GTGTAATTTAATTAGTTCAA+AGG | + | chr4_4:76785453-76785472 | Msa0704310:intron | 20.0% |
| !! | CTCTTAATTCTTTGTAATAA+TGG | - | chr4_4:76785776-76785795 | None:intergenic | 20.0% |
| !! | CATTATTACAAAGAATTAAG+AGG | + | chr4_4:76785774-76785793 | Msa0704310:intron | 20.0% |
| !! | AATATATATTTAGAAACGCA+TGG | - | chr4_4:76785855-76785874 | None:intergenic | 20.0% |
| !!! | ATTTAATATCATTCAGGTTA+TGG | + | chr4_4:76786318-76786337 | Msa0704310:intron | 20.0% |
| ! | TGATTTATAGTTGGAAAAAC+AGG | - | chr4_4:76783512-76783531 | None:intergenic | 25.0% |
| ! | ATACTAGAAAATAGGTTAAG+AGG | - | chr4_4:76783705-76783724 | None:intergenic | 25.0% |
| ! | TTGAAGAATCTTGAAATCAA+TGG | + | chr4_4:76784002-76784021 | Msa0704310:CDS | 25.0% |
| !! | GTATTTGTTCAAAATTTTGG+TGG | - | chr4_4:76784195-76784214 | None:intergenic | 25.0% |
| !! | CCAGTATTTGTTCAAAATTT+TGG | - | chr4_4:76784198-76784217 | None:intergenic | 25.0% |
| !! | CCAAAATTTTGAACAAATAC+TGG | + | chr4_4:76784195-76784214 | Msa0704310:intron | 25.0% |
| !!! | GTTATGTTTTTGGATTATGA+TGG | + | chr4_4:76784375-76784394 | Msa0704310:CDS | 25.0% |
| ! | TATCACATATATATCAGATG+AGG | + | chr4_4:76784526-76784545 | Msa0704310:intron | 25.0% |
| !! | TTTTTCTGCAAACAATTTTC+AGG | + | chr4_4:76784695-76784714 | Msa0704310:intron | 25.0% |
| !! | TTTACTCACTTTGTTGTATT+TGG | - | chr4_4:76784799-76784818 | None:intergenic | 25.0% |
| !!! | AATTTTAAGACCTTATTCCA+CGG | - | chr4_4:76784884-76784903 | None:intergenic | 25.0% |
| ! | TACAATAAACAACTTTGAGT+TGG | - | chr4_4:76785283-76785302 | None:intergenic | 25.0% |
| !!! | GAGTGTATATTTTTAATGGT+GGG | + | chr4_4:76785429-76785448 | Msa0704310:intron | 25.0% |
| !!! | AGTGTATATTTTTAATGGTG+GGG | + | chr4_4:76785430-76785449 | Msa0704310:intron | 25.0% |
| ! | CAATGTCAATTGTTTAATAC+AGG | + | chr4_4:76785523-76785542 | Msa0704310:intron | 25.0% |
| ! | CAATTGTTTAATACAGGTAT+TGG | + | chr4_4:76785529-76785548 | Msa0704310:intron | 25.0% |
| ! | GTAGCATATTTATAAGTTTG+TGG | - | chr4_4:76785712-76785731 | None:intergenic | 25.0% |
| ! | TGTAATAATGGTCAAATACT+TGG | - | chr4_4:76785764-76785783 | None:intergenic | 25.0% |
| !! | ACTAATAAATCGTTTTCAAC+AGG | + | chr4_4:76785904-76785923 | Msa0704310:intron | 25.0% |
| ! | GATGTATTTCCTGTTTATAT+TGG | + | chr4_4:76785943-76785962 | Msa0704310:CDS | 25.0% |
| ! | AGAACTAAACATAATTGACT+TGG | - | chr4_4:76786073-76786092 | None:intergenic | 25.0% |
| !! | TAGTTCTTTGTAAACTGTTT+TGG | + | chr4_4:76786086-76786105 | Msa0704310:intron | 25.0% |
| ! | AAATTAAGAGACATAGATCA+AGG | + | chr4_4:76786154-76786173 | Msa0704310:CDS | 25.0% |
| !! | ATGTATTTTATAACCAGTCA+GGG | - | chr4_4:76786423-76786442 | None:intergenic | 25.0% |
| ! | TACAAAAGAGCAAAAATGTA+TGG | + | chr4_4:76786481-76786500 | Msa0704310:three_prime_UTR | 25.0% |
| ! | TGCTTATTAAGTACTTAGTA+TGG | + | chr4_4:76786735-76786754 | Msa0704310:three_prime_UTR | 25.0% |
| TAGAAAATAGGTTAAGAGGT+GGG | - | chr4_4:76783701-76783720 | None:intergenic | 30.0% | |
| AACGTGTATATCAAACCTTA+GGG | - | chr4_4:76783743-76783762 | None:intergenic | 30.0% | |
| TAACGTGTATATCAAACCTT+AGG | - | chr4_4:76783744-76783763 | None:intergenic | 30.0% | |
| AAGAATCTTGAAATCAATGG+AGG | + | chr4_4:76784005-76784024 | Msa0704310:CDS | 30.0% | |
| TTGTATTCTTCAGCTAAAGA+AGG | - | chr4_4:76784095-76784114 | None:intergenic | 30.0% | |
| TAGCTGAAGAATACAATTCT+TGG | + | chr4_4:76784099-76784118 | Msa0704310:CDS | 30.0% | |
| AAACTGTTAAGAAACTTGCA+AGG | + | chr4_4:76784550-76784569 | Msa0704310:CDS | 30.0% | |
| TTGGATGAACTATATTATGC+TGG | + | chr4_4:76784735-76784754 | Msa0704310:CDS | 30.0% | |
| ! | TTGTATTTGGACTCTTTTGT+TGG | - | chr4_4:76784786-76784805 | None:intergenic | 30.0% |
| TTTGTAGAATAACAAAGCAG+AGG | + | chr4_4:76784939-76784958 | Msa0704310:intron | 30.0% | |
| ATTTGTTCCCATGATAAATG+AGG | + | chr4_4:76784987-76785006 | Msa0704310:CDS | 30.0% | |
| TGACTAACCTCATTTATCAT+GGG | - | chr4_4:76784997-76785016 | None:intergenic | 30.0% | |
| GTACACCTGAAAATTAACAA+AGG | - | chr4_4:76785104-76785123 | None:intergenic | 30.0% | |
| ! | CTTTAGATGTGTTGATGAAA+AGG | + | chr4_4:76785198-76785217 | Msa0704310:CDS | 30.0% |
| TTGTTTATTGTACACAGAGA+TGG | + | chr4_4:76785291-76785310 | Msa0704310:intron | 30.0% | |
| TGTTTATTGTACACAGAGAT+GGG | + | chr4_4:76785292-76785311 | Msa0704310:intron | 30.0% | |
| !! | GAGGGAGTGTATATTTTTAA+TGG | + | chr4_4:76785425-76785444 | Msa0704310:intron | 30.0% |
| !! | GGAGTGTATATTTTTAATGG+TGG | + | chr4_4:76785428-76785447 | Msa0704310:intron | 30.0% |
| !! | GTGTATATTTTTAATGGTGG+GGG | + | chr4_4:76785431-76785450 | Msa0704310:intron | 30.0% |
| TGTTTGATTGTGACAAATGA+AGG | - | chr4_4:76785650-76785669 | None:intergenic | 30.0% | |
| TATAAATATGCTACTGCTCA+TGG | + | chr4_4:76785718-76785737 | Msa0704310:intron | 30.0% | |
| CTATCATCACCAATATAAAC+AGG | - | chr4_4:76785955-76785974 | None:intergenic | 30.0% | |
| GAAATTATGCTTACCTCATT+AGG | - | chr4_4:76786241-76786260 | None:intergenic | 30.0% | |
| ! | CATGTATTTTATAACCAGTC+AGG | - | chr4_4:76786424-76786443 | None:intergenic | 30.0% |
| TAGCCAAGTAGTAATTAGTA+CGG | + | chr4_4:76786577-76786596 | Msa0704310:three_prime_UTR | 30.0% | |
| ! | CTGTGGGTTTGATTTATAGT+TGG | - | chr4_4:76783521-76783540 | None:intergenic | 35.0% |
| AAAGAGAGATAGGGAATCTT+TGG | - | chr4_4:76783617-76783636 | None:intergenic | 35.0% | |
| ATTGCAATGGAATGCAAAAG+AGG | - | chr4_4:76783662-76783681 | None:intergenic | 35.0% | |
| AGAAAATAGGTTAAGAGGTG+GGG | - | chr4_4:76783700-76783719 | None:intergenic | 35.0% | |
| CTAGAAAATAGGTTAAGAGG+TGG | - | chr4_4:76783702-76783721 | None:intergenic | 35.0% | |
| TTTCTTCATCACAAACCCTA+AGG | + | chr4_4:76783725-76783744 | Msa0704310:five_prime_UTR | 35.0% | |
| GAAGATGACTCAAAAGAATG+TGG | + | chr4_4:76783872-76783891 | Msa0704310:exon | 35.0% | |
| TTCTTCAAAATTCTCCTCCT+TGG | - | chr4_4:76783990-76784009 | None:intergenic | 35.0% | |
| GAGGACAAAGAATCAATACA+TGG | + | chr4_4:76784024-76784043 | Msa0704310:CDS | 35.0% | |
| TAACAGTGAAAACAGAGTGA+TGG | - | chr4_4:76784135-76784154 | None:intergenic | 35.0% | |
| TCAAACATATCTAATGCCGA+TGG | - | chr4_4:76784321-76784340 | None:intergenic | 35.0% | |
| ACAAATTATGGATGCTGCAA+AGG | + | chr4_4:76784341-76784360 | Msa0704310:CDS | 35.0% | |
| CAAATTATGGATGCTGCAAA+GGG | + | chr4_4:76784342-76784361 | Msa0704310:CDS | 35.0% | |
| TTTCCTACTGCAATTGTTAC+TGG | + | chr4_4:76784576-76784595 | Msa0704310:CDS | 35.0% | |
| ! | GGTGTACAATTTTGTTCGTT+TGG | + | chr4_4:76784716-76784735 | Msa0704310:intron | 35.0% |
| CTATATTATGCTGGAAGTCA+TGG | + | chr4_4:76784744-76784763 | Msa0704310:CDS | 35.0% | |
| AGTCATGGCATGGATATTAA+AGG | + | chr4_4:76784759-76784778 | Msa0704310:CDS | 35.0% | |
| GTCATGGCATGGATATTAAA+GGG | + | chr4_4:76784760-76784779 | Msa0704310:CDS | 35.0% | |
| TATCATGGGAACAAATTCTC+TGG | - | chr4_4:76784983-76785002 | None:intergenic | 35.0% | |
| GTGACTAACCTCATTTATCA+TGG | - | chr4_4:76784998-76785017 | None:intergenic | 35.0% | |
| GAGAAAACAAAATCAACTCC+TGG | + | chr4_4:76785136-76785155 | Msa0704310:CDS | 35.0% | |
| ! | AACACATCTAAAGTGAACAG+AGG | - | chr4_4:76785191-76785210 | None:intergenic | 35.0% |
| AGTTCAAAGGTGATTATGAC+AGG | + | chr4_4:76785466-76785485 | Msa0704310:intron | 35.0% | |
| GTTCAAAGGTGATTATGACA+GGG | + | chr4_4:76785467-76785486 | Msa0704310:intron | 35.0% | |
| TGACTCTAGCAAAAATTCGA+GGG | - | chr4_4:76785591-76785610 | None:intergenic | 35.0% | |
| ! | GAATTTTTGCTAGAGTCACT+TGG | + | chr4_4:76785593-76785612 | Msa0704310:CDS | 35.0% |
| AGGAAATACATCGTTACAGT+TGG | - | chr4_4:76785935-76785954 | None:intergenic | 35.0% | |
| TACCTTGAATGCATCTTCAT+CGG | - | chr4_4:76785980-76785999 | None:intergenic | 35.0% | |
| ! | AGAGACATAGATCAAGGTTT+TGG | + | chr4_4:76786160-76786179 | Msa0704310:CDS | 35.0% |
| TCTAGTCTCTAAGTTTCCAA+AGG | + | chr4_4:76786186-76786205 | Msa0704310:CDS | 35.0% | |
| AGCCAAGTAGTAATTAGTAC+GGG | + | chr4_4:76786578-76786597 | Msa0704310:three_prime_UTR | 35.0% | |
| CAGAATCACTTCATCTGATA+TGG | - | chr4_4:76786623-76786642 | None:intergenic | 35.0% | |
| TCAGATGAAGTGATTCTGAA+TGG | + | chr4_4:76786625-76786644 | Msa0704310:three_prime_UTR | 35.0% | |
| CAGATGAAGTGATTCTGAAT+GGG | + | chr4_4:76786626-76786645 | Msa0704310:three_prime_UTR | 35.0% | |
| GAAGAGGCAAAAGAGAGATA+GGG | - | chr4_4:76783626-76783645 | None:intergenic | 40.0% | |
| TGAAGAGGCAAAAGAGAGAT+AGG | - | chr4_4:76783627-76783646 | None:intergenic | 40.0% | |
| AGGAAGAAGGGAAATTGAAG+AGG | - | chr4_4:76783642-76783661 | None:intergenic | 40.0% | |
| GGAATGCAAAAGAGGAAGAA+GGG | - | chr4_4:76783654-76783673 | None:intergenic | 40.0% | |
| TGGAATGCAAAAGAGGAAGA+AGG | - | chr4_4:76783655-76783674 | None:intergenic | 40.0% | |
| GTGAGAAGTGGATATTGCAA+TGG | - | chr4_4:76783675-76783694 | None:intergenic | 40.0% | |
| GAAAATAGGTTAAGAGGTGG+GGG | - | chr4_4:76783699-76783718 | None:intergenic | 40.0% | |
| AAAACCGGAATGAATGGTAG+CGG | + | chr4_4:76783909-76783928 | Msa0704310:CDS | 40.0% | |
| GTGGATACATTCACATTCCA+AGG | + | chr4_4:76783970-76783989 | Msa0704310:CDS | 40.0% | |
| GATACATTCACATTCCAAGG+AGG | + | chr4_4:76783973-76783992 | Msa0704310:CDS | 40.0% | |
| GGAGAAGATTTGACATGAGT+TGG | - | chr4_4:76784074-76784093 | None:intergenic | 40.0% | |
| ACATATCTAATGCCGATGGA+TGG | - | chr4_4:76784317-76784336 | None:intergenic | 40.0% | |
| CTTCCAGTAACAATTGCAGT+AGG | - | chr4_4:76784582-76784601 | None:intergenic | 40.0% | |
| ATTTGACCTATATAGTGCCG+TGG | + | chr4_4:76784864-76784883 | Msa0704310:intron | 40.0% | |
| CTTATTCCACGGCACTATAT+AGG | - | chr4_4:76784873-76784892 | None:intergenic | 40.0% | |
| CTATATAGTGCCGTGGAATA+AGG | + | chr4_4:76784871-76784890 | Msa0704310:intron | 40.0% | |
| !! | TACACAGAGATGGGTTGAAT+TGG | + | chr4_4:76785301-76785320 | Msa0704310:intron | 40.0% |
| ! | CTTCGGGTACTCTTTTAACA+CGG | - | chr4_4:76785342-76785361 | None:intergenic | 40.0% |
| AGATTCGTCCCGCAATTAAA+TGG | + | chr4_4:76785552-76785571 | Msa0704310:CDS | 40.0% | |
| GATTCGTCCCGCAATTAAAT+GGG | + | chr4_4:76785553-76785572 | Msa0704310:CDS | 40.0% | |
| AATTAAATGGGACAAGGGCA+AGG | + | chr4_4:76785565-76785584 | Msa0704310:CDS | 40.0% | |
| GTGACTCTAGCAAAAATTCG+AGG | - | chr4_4:76785592-76785611 | None:intergenic | 40.0% | |
| ! | TACTGCTCATGGTGATTTGT+TGG | + | chr4_4:76785729-76785748 | Msa0704310:intron | 40.0% |
| ATGAGTAAACTAATCCCACG+AGG | - | chr4_4:76785812-76785831 | None:intergenic | 40.0% | |
| AACCGATGAAGATGCATTCA+AGG | + | chr4_4:76785975-76785994 | Msa0704310:CDS | 40.0% | |
| CTCTTTACAAGAGCCTAATG+AGG | + | chr4_4:76786225-76786244 | Msa0704310:CDS | 40.0% | |
| TATGGATTTCCTTCAGCGTT+TGG | + | chr4_4:76786336-76786355 | Msa0704310:CDS | 40.0% | |
| GCCAAGTAGTAATTAGTACG+GGG | + | chr4_4:76786579-76786598 | Msa0704310:three_prime_UTR | 40.0% | |
| CCAAGTAGTAATTAGTACGG+GGG | + | chr4_4:76786580-76786599 | Msa0704310:three_prime_UTR | 40.0% | |
| CAAGTAGTAATTAGTACGGG+GGG | + | chr4_4:76786581-76786600 | Msa0704310:three_prime_UTR | 40.0% | |
| ! | GTTGTGTCTGAGACCAAAAC+CGG | + | chr4_4:76783894-76783913 | Msa0704310:CDS | 45.0% |
| GAGACCAAAACCGGAATGAA+TGG | + | chr4_4:76783903-76783922 | Msa0704310:CDS | 45.0% | |
| ! | GCTACCATTCATTCCGGTTT+TGG | - | chr4_4:76783910-76783929 | None:intergenic | 45.0% |
| AGTACCGCTACCATTCATTC+CGG | - | chr4_4:76783916-76783935 | None:intergenic | 45.0% | |
| GGAATGTGAATGTATCCACC+CGG | - | chr4_4:76783969-76783988 | None:intergenic | 45.0% | |
| TGGTACCTTGTCACCAATTG+TGG | + | chr4_4:76784395-76784414 | Msa0704310:CDS | 45.0% | |
| ! | GTCATCCACAATTGGTGACA+AGG | - | chr4_4:76784403-76784422 | None:intergenic | 45.0% |
| ! | TTCAGACATGAAAGCACGGT+CGG | - | chr4_4:76784427-76784446 | None:intergenic | 45.0% |
| CCGATTCAGACATGAAAGCA+CGG | - | chr4_4:76784431-76784450 | None:intergenic | 45.0% | |
| CCGTGCTTTCATGTCTGAAT+CGG | + | chr4_4:76784428-76784447 | Msa0704310:CDS | 45.0% | |
| TTATGCTGGAAGTCATGGCA+TGG | + | chr4_4:76784749-76784768 | Msa0704310:CDS | 45.0% | |
| ATGGGAACAAATTCTCTGGC+AGG | - | chr4_4:76784979-76784998 | None:intergenic | 45.0% | |
| GAACTTGTGGTTCTCAACTC+TGG | - | chr4_4:76785164-76785183 | None:intergenic | 45.0% | |
| CTTGTGTTAGACGAAGCTTC+GGG | - | chr4_4:76785358-76785377 | None:intergenic | 45.0% | |
| CCTTGTGTTAGACGAAGCTT+CGG | - | chr4_4:76785359-76785378 | None:intergenic | 45.0% | |
| AGCTTCGTCTAACACAAGGA+AGG | + | chr4_4:76785360-76785379 | Msa0704310:CDS | 45.0% | |
| TCGTCTAACACAAGGAAGGA+AGG | + | chr4_4:76785364-76785383 | Msa0704310:CDS | 45.0% | |
| TCTAACACAAGGAAGGAAGG+TGG | + | chr4_4:76785367-76785386 | Msa0704310:intron | 45.0% | |
| CTAACACAAGGAAGGAAGGT+GGG | + | chr4_4:76785368-76785387 | Msa0704310:intron | 45.0% | |
| TCCCGCAATTAAATGGGACA+AGG | + | chr4_4:76785559-76785578 | Msa0704310:CDS | 45.0% | |
| CCCTTGTCCCATTTAATTGC+GGG | - | chr4_4:76785563-76785582 | None:intergenic | 45.0% | |
| CCCGCAATTAAATGGGACAA+GGG | + | chr4_4:76785560-76785579 | Msa0704310:CDS | 45.0% | |
| GCCCTTGTCCCATTTAATTG+CGG | - | chr4_4:76785564-76785583 | None:intergenic | 45.0% | |
| AAACTAATCCCACGAGGTGT+AGG | - | chr4_4:76785806-76785825 | None:intergenic | 45.0% | |
| ATCTCCAAGATCACGCTCTA+GGG | + | chr4_4:76786375-76786394 | Msa0704310:CDS | 45.0% | |
| AGACATTGTACATCCCTGAC+TGG | + | chr4_4:76786407-76786426 | Msa0704310:three_prime_UTR | 45.0% | |
| CCCCCGTACTAATTACTACT+TGG | - | chr4_4:76786583-76786602 | None:intergenic | 45.0% | |
| !! | AAAAAAGATAAAAAAAAAAA+GGG | - | chr4_4:76784649-76784668 | None:intergenic | 5.0% |
| !!! | TTAATTTTATTTTTATGTTT+TGG | + | chr4_4:76785623-76785642 | Msa0704310:intron | 5.0% |
| GGGAAGAAGACATAGGCTGT+GGG | - | chr4_4:76783537-76783556 | None:intergenic | 50.0% | |
| GAAGTGGGGGAAGAAGACAT+AGG | - | chr4_4:76783544-76783563 | None:intergenic | 50.0% | |
| AGAGCAAGAGAGTGGAAGTG+GGG | - | chr4_4:76783558-76783577 | None:intergenic | 50.0% | |
| GAGAGCAAGAGAGTGGAAGT+GGG | - | chr4_4:76783559-76783578 | None:intergenic | 50.0% | |
| AGAGAGCAAGAGAGTGGAAG+TGG | - | chr4_4:76783560-76783579 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGCAAGAGAG+TGG | - | chr4_4:76783566-76783585 | None:intergenic | 50.0% | |
| !! | TGGTAGCGGTACTATTACCG+TGG | + | chr4_4:76783923-76783942 | Msa0704310:CDS | 50.0% |
| ! | TCAGACATGAAAGCACGGTC+GGG | - | chr4_4:76784426-76784445 | None:intergenic | 50.0% |
| ! | GAACAGAGGTGCAGAACTTG+TGG | - | chr4_4:76785177-76785196 | None:intergenic | 50.0% |
| CCGAAGCTTCGTCTAACACA+AGG | + | chr4_4:76785356-76785375 | Msa0704310:CDS | 50.0% | |
| TATGCAGCAGCTGTGTCCTT+TGG | - | chr4_4:76786205-76786224 | None:intergenic | 50.0% | |
| GGATTTCCTTCAGCGTTTGG+TGG | + | chr4_4:76786339-76786358 | Msa0704310:CDS | 50.0% | |
| CATCTCCAAGATCACGCTCT+AGG | + | chr4_4:76786374-76786393 | Msa0704310:CDS | 50.0% | |
| TACACCCTAGAGCGTGATCT+TGG | - | chr4_4:76786382-76786401 | None:intergenic | 50.0% | |
| GGGGAAGAAGACATAGGCTG+TGG | - | chr4_4:76783538-76783557 | None:intergenic | 55.0% | |
| GAGCAAGAGAGTGGAAGTGG+GGG | - | chr4_4:76783557-76783576 | None:intergenic | 55.0% | |
| TCGACAGCTTCGCCATCCAT+CGG | + | chr4_4:76784302-76784321 | Msa0704310:intron | 55.0% | |
| ! | CAGACATGAAAGCACGGTCG+GGG | - | chr4_4:76784425-76784444 | None:intergenic | 55.0% |
| TGGTTCTCAACTCTGGCACC+AGG | - | chr4_4:76785157-76785176 | None:intergenic | 55.0% | |
| CAAGGAAGGAAGGTGGGTCA+TGG | + | chr4_4:76785374-76785393 | Msa0704310:intron | 55.0% | |
| ! | TCCTTCAGCGTTTGGTGGAG+TGG | + | chr4_4:76786344-76786363 | Msa0704310:CDS | 55.0% |
| TCCACTCCACCAAACGCTGA+AGG | - | chr4_4:76786348-76786367 | None:intergenic | 55.0% | |
| ! | AGAGGTGGGGGTGTGAGAAG+TGG | - | chr4_4:76783687-76783706 | None:intergenic | 60.0% |
| TACCGTGGCACAGAAGCCAC+CGG | + | chr4_4:76783938-76783957 | Msa0704310:CDS | 60.0% | |
| !! | ATGTATCCACCCGGTGCTGC+CGG | - | chr4_4:76783960-76783979 | None:intergenic | 60.0% |
| CGGTCGGGGTCATCCACAAT+TGG | - | chr4_4:76784411-76784430 | None:intergenic | 60.0% | |
| AGGGTGACACCTACACCTCG+TGG | + | chr4_4:76785794-76785813 | Msa0704310:intron | 60.0% | |
| GGGTGACACCTACACCTCGT+GGG | + | chr4_4:76785795-76785814 | Msa0704310:intron | 60.0% | |
| TGCCGGTGGCTTCTGTGCCA+CGG | - | chr4_4:76783943-76783962 | None:intergenic | 65.0% | |
| ACAGAAGCCACCGGCAGCAC+CGG | + | chr4_4:76783947-76783966 | Msa0704310:CDS | 65.0% | |
| CAGAAGCCACCGGCAGCACC+GGG | + | chr4_4:76783948-76783967 | Msa0704310:CDS | 70.0% | |
| !! | TATCCACCCGGTGCTGCCGG+TGG | - | chr4_4:76783957-76783976 | None:intergenic | 70.0% |
| ! | AAGCCACCGGCAGCACCGGG+TGG | + | chr4_4:76783951-76783970 | Msa0704310:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 76783504 | 76786759 | 76783504 | ID=Msa0704310;Name=Msa0704310 |
| chr4_4 | mRNA | 76783504 | 76786759 | 76783504 | ID=Msa0704310-mRNA-1;Parent=Msa0704310;Name=Msa0704310-mRNA-1;_AED=0.19;_eAED=0.19;_QI=226|1|1|1|0.83|0.76|13|357|366 |
| chr4_4 | exon | 76783504 | 76783541 | 76783504 | ID=Msa0704310-mRNA-1:exon:24134;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76783564 | 76783746 | 76783564 | ID=Msa0704310-mRNA-1:exon:24135;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76783871 | 76784124 | 76783871 | ID=Msa0704310-mRNA-1:exon:24136;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76784309 | 76784449 | 76784309 | ID=Msa0704310-mRNA-1:exon:24137;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76784543 | 76784614 | 76784543 | ID=Msa0704310-mRNA-1:exon:24138;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76784717 | 76784809 | 76784717 | ID=Msa0704310-mRNA-1:exon:24139;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76784946 | 76785008 | 76784946 | ID=Msa0704310-mRNA-1:exon:24140;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76785118 | 76785219 | 76785118 | ID=Msa0704310-mRNA-1:exon:24141;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76785308 | 76785385 | 76785308 | ID=Msa0704310-mRNA-1:exon:24142;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76785545 | 76785614 | 76785545 | ID=Msa0704310-mRNA-1:exon:24143;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76785926 | 76785996 | 76785926 | ID=Msa0704310-mRNA-1:exon:24144;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76786154 | 76786246 | 76786154 | ID=Msa0704310-mRNA-1:exon:24145;Parent=Msa0704310-mRNA-1 |
| chr4_4 | exon | 76786334 | 76786759 | 76786334 | ID=Msa0704310-mRNA-1:exon:24146;Parent=Msa0704310-mRNA-1 |
| chr4_4 | five_prime_UTR | 76783504 | 76783541 | 76783504 | ID=Msa0704310-mRNA-1:five_prime_utr;Parent=Msa0704310-mRNA-1 |
| chr4_4 | five_prime_UTR | 76783564 | 76783746 | 76783564 | ID=Msa0704310-mRNA-1:five_prime_utr;Parent=Msa0704310-mRNA-1 |
| chr4_4 | five_prime_UTR | 76783871 | 76783875 | 76783871 | ID=Msa0704310-mRNA-1:five_prime_utr;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76783876 | 76784124 | 76783876 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76784309 | 76784449 | 76784309 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76784543 | 76784614 | 76784543 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76784717 | 76784809 | 76784717 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76784946 | 76785008 | 76784946 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76785118 | 76785219 | 76785118 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76785308 | 76785385 | 76785308 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76785545 | 76785614 | 76785545 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76785926 | 76785996 | 76785926 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76786154 | 76786246 | 76786154 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | CDS | 76786334 | 76786402 | 76786334 | ID=Msa0704310-mRNA-1:cds;Parent=Msa0704310-mRNA-1 |
| chr4_4 | three_prime_UTR | 76786403 | 76786759 | 76786403 | ID=Msa0704310-mRNA-1:three_prime_utr;Parent=Msa0704310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
