Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658540 | XP_013446745.1 | 99.676 | 309 | 1 | 0 | 10 | 318 | 89 | 397 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658540 | Msa1367370 | 0.808278 | 3.350327e-50 | -8.615850e-47 |
| Msa0658540 | Msa1443110 | 0.807566 | 4.747389e-50 | -8.615850e-47 |
| Msa0469030 | Msa0658540 | 0.811622 | 6.385772e-51 | -8.615850e-47 |
| Msa0507680 | Msa0658540 | 0.800649 | 1.305090e-48 | -8.615850e-47 |
| Msa0524190 | Msa0658540 | 0.811037 | 8.551740e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658540 | MtrunA17_Chr8g0381601 | 99.676 | 309 | 1 | 0 | 10 | 318 | 89 | 397 | 0.0 | 652 |
| Msa0658540 | MtrunA17_Chr3g0123571 | 85.714 | 308 | 43 | 1 | 11 | 317 | 91 | 398 | 0.0 | 572 |
| Msa0658540 | MtrunA17_Chr8g0381611 | 77.815 | 302 | 67 | 0 | 11 | 312 | 82 | 383 | 0.0 | 516 |
| Msa0658540 | MtrunA17_Chr7g0227041 | 75.758 | 297 | 71 | 1 | 11 | 306 | 97 | 393 | 0.0 | 509 |
| Msa0658540 | MtrunA17_Chr2g0326801 | 76.871 | 294 | 68 | 0 | 11 | 304 | 87 | 380 | 0.0 | 506 |
| Msa0658540 | MtrunA17_Chr4g0028891 | 73.090 | 301 | 81 | 0 | 8 | 308 | 108 | 408 | 6.60e-177 | 495 |
| Msa0658540 | MtrunA17_Chr4g0047961 | 46.735 | 291 | 141 | 8 | 24 | 300 | 62 | 352 | 2.80e-85 | 261 |
| Msa0658540 | MtrunA17_Chr2g0281421 | 50.593 | 253 | 116 | 6 | 24 | 267 | 80 | 332 | 2.04e-83 | 257 |
| Msa0658540 | MtrunA17_Chr1g0189401 | 42.679 | 321 | 162 | 7 | 2 | 300 | 59 | 379 | 1.16e-81 | 252 |
| Msa0658540 | MtrunA17_Chr2g0276851 | 46.468 | 269 | 132 | 7 | 18 | 274 | 76 | 344 | 1.50e-79 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658540 | AT1G67850.6 | 82.060 | 301 | 54 | 0 | 11 | 311 | 94 | 394 | 0.0 | 545 |
| Msa0658540 | AT1G67850.7 | 82.060 | 301 | 54 | 0 | 11 | 311 | 94 | 394 | 0.0 | 545 |
| Msa0658540 | AT1G67850.1 | 82.060 | 301 | 54 | 0 | 11 | 311 | 94 | 394 | 0.0 | 545 |
| Msa0658540 | AT1G67850.4 | 82.060 | 301 | 54 | 0 | 11 | 311 | 78 | 378 | 0.0 | 545 |
| Msa0658540 | AT1G67850.3 | 82.060 | 301 | 54 | 0 | 11 | 311 | 94 | 394 | 0.0 | 545 |
| Msa0658540 | AT1G67850.2 | 82.060 | 301 | 54 | 0 | 11 | 311 | 94 | 394 | 0.0 | 545 |
| Msa0658540 | AT1G67850.5 | 82.060 | 301 | 54 | 0 | 11 | 311 | 94 | 394 | 0.0 | 545 |
| Msa0658540 | AT1G08040.2 | 82.993 | 294 | 50 | 0 | 11 | 304 | 81 | 374 | 0.0 | 539 |
| Msa0658540 | AT1G08040.4 | 82.993 | 294 | 50 | 0 | 11 | 304 | 81 | 374 | 0.0 | 539 |
| Msa0658540 | AT1G08040.1 | 82.993 | 294 | 50 | 0 | 11 | 304 | 81 | 374 | 0.0 | 539 |
| Msa0658540 | AT1G08040.3 | 82.993 | 294 | 50 | 0 | 11 | 304 | 77 | 370 | 0.0 | 539 |
| Msa0658540 | AT2G28310.2 | 79.392 | 296 | 61 | 0 | 9 | 304 | 72 | 367 | 0.0 | 526 |
| Msa0658540 | AT2G28310.1 | 79.392 | 296 | 61 | 0 | 9 | 304 | 72 | 367 | 0.0 | 526 |
| Msa0658540 | AT2G28310.3 | 79.392 | 296 | 61 | 0 | 9 | 304 | 72 | 367 | 0.0 | 526 |
| Msa0658540 | AT3G27470.2 | 77.104 | 297 | 68 | 0 | 11 | 307 | 90 | 386 | 0.0 | 511 |
| Msa0658540 | AT3G27470.1 | 77.104 | 297 | 68 | 0 | 11 | 307 | 90 | 386 | 0.0 | 511 |
| Msa0658540 | AT3G27470.4 | 77.104 | 297 | 68 | 0 | 11 | 307 | 90 | 386 | 0.0 | 511 |
| Msa0658540 | AT3G27470.3 | 77.104 | 297 | 68 | 0 | 11 | 307 | 90 | 386 | 0.0 | 511 |
| Msa0658540 | AT3G27470.5 | 77.104 | 297 | 68 | 0 | 11 | 307 | 90 | 386 | 0.0 | 510 |
| Msa0658540 | AT3G26440.5 | 73.941 | 307 | 79 | 1 | 11 | 316 | 111 | 417 | 1.39e-178 | 500 |
| Msa0658540 | AT3G26440.1 | 73.941 | 307 | 79 | 1 | 11 | 316 | 88 | 394 | 2.03e-178 | 499 |
| Msa0658540 | AT3G26440.2 | 73.941 | 307 | 79 | 1 | 11 | 316 | 88 | 394 | 2.03e-178 | 499 |
| Msa0658540 | AT3G26440.6 | 73.941 | 307 | 79 | 1 | 11 | 316 | 111 | 417 | 2.10e-178 | 500 |
| Msa0658540 | AT1G13000.2 | 75.251 | 299 | 74 | 0 | 11 | 309 | 98 | 396 | 2.19e-178 | 499 |
| Msa0658540 | AT1G13000.5 | 75.251 | 299 | 74 | 0 | 11 | 309 | 98 | 396 | 2.19e-178 | 499 |
| Msa0658540 | AT1G13000.4 | 75.251 | 299 | 74 | 0 | 11 | 309 | 98 | 396 | 2.19e-178 | 499 |
| Msa0658540 | AT1G13000.1 | 75.251 | 299 | 74 | 0 | 11 | 309 | 98 | 396 | 2.19e-178 | 499 |
| Msa0658540 | AT3G26440.4 | 73.941 | 307 | 79 | 1 | 11 | 316 | 64 | 370 | 5.31e-178 | 497 |
| Msa0658540 | AT1G24570.2 | 72.937 | 303 | 80 | 2 | 11 | 311 | 77 | 379 | 2.30e-172 | 483 |
| Msa0658540 | AT1G24570.1 | 72.696 | 293 | 78 | 2 | 21 | 311 | 80 | 372 | 1.21e-165 | 466 |
| Msa0658540 | AT3G26440.3 | 75.180 | 278 | 68 | 1 | 11 | 287 | 88 | 365 | 6.08e-163 | 459 |
| Msa0658540 | AT1G13000.3 | 76.923 | 234 | 54 | 0 | 11 | 244 | 98 | 331 | 1.33e-139 | 398 |
| Msa0658540 | AT4G12840.2 | 50.936 | 267 | 122 | 8 | 18 | 277 | 76 | 340 | 3.54e-89 | 272 |
| Msa0658540 | AT4G12840.1 | 50.936 | 267 | 122 | 8 | 18 | 277 | 76 | 340 | 4.68e-89 | 272 |
| Msa0658540 | AT1G11170.3 | 48.162 | 272 | 132 | 6 | 24 | 286 | 85 | 356 | 1.76e-83 | 257 |
| Msa0658540 | AT4G12840.3 | 51.613 | 248 | 111 | 8 | 37 | 277 | 1 | 246 | 2.52e-83 | 254 |
| Msa0658540 | AT1G11170.1 | 47.872 | 282 | 135 | 7 | 24 | 296 | 85 | 363 | 1.70e-82 | 256 |
| Msa0658540 | AT1G11170.6 | 47.872 | 282 | 135 | 7 | 24 | 296 | 85 | 363 | 1.70e-82 | 256 |
| Msa0658540 | AT1G11170.5 | 47.872 | 282 | 135 | 7 | 24 | 296 | 85 | 363 | 1.70e-82 | 256 |
| Msa0658540 | AT1G11170.7 | 47.872 | 282 | 135 | 7 | 24 | 296 | 85 | 363 | 1.70e-82 | 256 |
| Msa0658540 | AT1G61240.8 | 48.352 | 273 | 128 | 7 | 24 | 285 | 15 | 285 | 1.87e-82 | 254 |
| Msa0658540 | AT1G61240.4 | 48.352 | 273 | 128 | 7 | 24 | 285 | 82 | 352 | 1.20e-81 | 254 |
| Msa0658540 | AT1G61240.5 | 48.352 | 273 | 128 | 7 | 24 | 285 | 82 | 352 | 1.20e-81 | 254 |
| Msa0658540 | AT1G61240.6 | 48.352 | 273 | 128 | 7 | 24 | 285 | 82 | 352 | 1.20e-81 | 254 |
| Msa0658540 | AT1G61240.2 | 48.352 | 273 | 128 | 7 | 24 | 285 | 82 | 352 | 1.20e-81 | 254 |
| Msa0658540 | AT1G61240.1 | 48.352 | 273 | 128 | 7 | 24 | 285 | 82 | 352 | 1.20e-81 | 254 |
| Msa0658540 | AT1G61240.3 | 48.352 | 273 | 128 | 7 | 24 | 285 | 82 | 352 | 1.20e-81 | 254 |
| Msa0658540 | AT1G61240.7 | 48.519 | 270 | 126 | 7 | 24 | 282 | 82 | 349 | 1.89e-81 | 251 |
| Msa0658540 | AT1G11170.4 | 49.407 | 253 | 119 | 6 | 24 | 267 | 85 | 337 | 5.08e-81 | 249 |
| Msa0658540 | AT1G11170.8 | 49.407 | 253 | 119 | 6 | 24 | 267 | 85 | 337 | 5.08e-81 | 249 |
| Msa0658540 | AT4G18530.3 | 48.669 | 263 | 121 | 7 | 16 | 267 | 64 | 323 | 1.29e-79 | 247 |
| Msa0658540 | AT4G18530.1 | 48.669 | 263 | 121 | 7 | 16 | 267 | 69 | 328 | 1.60e-79 | 247 |
| Msa0658540 | AT1G11170.2 | 49.569 | 232 | 109 | 5 | 24 | 247 | 85 | 316 | 7.01e-74 | 231 |
| Msa0658540 | AT4G18530.2 | 48.347 | 242 | 112 | 6 | 16 | 247 | 69 | 307 | 3.79e-73 | 228 |
| Msa0658540 | AT2G25905.1 | 76.033 | 121 | 28 | 1 | 47 | 166 | 107 | 227 | 1.99e-63 | 201 |
| Msa0658540 | AT1G11170.9 | 49.701 | 167 | 79 | 3 | 24 | 185 | 85 | 251 | 3.39e-50 | 167 |
Find 111 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATAGTCGTATCCAATT+TGG | 0.129636 | 4_3:+68658252 | None:intergenic |
| AACCATTCGACACCAAATTT+TGG | 0.181534 | 4_3:+68658138 | None:intergenic |
| AGTTCAAAGGATCCAAAATT+TGG | 0.242965 | 4_3:-68658150 | Msa0658540:three_prime_UTR |
| CTGCGTGTGGCATATGATTC+AGG | 0.255286 | 4_3:-68659333 | Msa0658540:intron |
| AGTTGATTTGGAACGGTATA+TGG | 0.272893 | 4_3:-68658211 | Msa0658540:three_prime_UTR |
| CATGCTTTCTCACCAGTCTT+AGG | 0.278572 | 4_3:+68659714 | None:intergenic |
| TCTGCACCTCTTGGATTTGA+TGG | 0.289728 | 4_3:+68661054 | None:intergenic |
| ATGCCTGGTAATACCCAAAT+TGG | 0.296067 | 4_3:-68658266 | Msa0658540:three_prime_UTR |
| TTTACTGTATGTAGTTGATT+TGG | 0.301562 | 4_3:-68658223 | Msa0658540:three_prime_UTR |
| ATGCAGGTTTGTTGAGATTA+TGG | 0.308035 | 4_3:-68659384 | Msa0658540:intron |
| TGCCATGTCAGCCCATTATT+AGG | 0.313286 | 4_3:+68659662 | None:intergenic |
| CCTGGTCTGGAACCTAATAA+TGG | 0.328501 | 4_3:-68659674 | Msa0658540:CDS |
| GTTTAATTCAACTAATCCTT+AGG | 0.330947 | 4_3:-68658504 | Msa0658540:exon |
| TGTCGAATGGTTGGCTGTTA+TGG | 0.336984 | 4_3:-68658127 | Msa0658540:three_prime_UTR |
| TATTCCCTCGCTAGGGAATC+AGG | 0.352487 | 4_3:-68658988 | Msa0658540:intron |
| TTAATAGTCGTATCCAATTT+GGG | 0.358427 | 4_3:+68658253 | None:intergenic |
| TGGTAGGGAGAATCAAAATC+TGG | 0.387875 | 4_3:-68658872 | Msa0658540:intron |
| GGAGATTTCACAGCCTGGTC+TGG | 0.389644 | 4_3:-68659687 | Msa0658540:CDS |
| ATACTTCTGTTTCATTATGA+TGG | 0.394345 | 4_3:-68660403 | Msa0658540:CDS |
| TTTAATTCAACTAATCCTTA+GGG | 0.417858 | 4_3:-68658503 | Msa0658540:exon |
| CTGCACGCGCCATTCGACTC+TGG | 0.419270 | 4_3:+68658561 | None:intergenic |
| TATTGATGCAGCTGTGAAAA+AGG | 0.419513 | 4_3:-68660524 | Msa0658540:intron |
| AATCAACTACATACAGTAAA+GGG | 0.419681 | 4_3:+68658226 | None:intergenic |
| GGTAATCTTTCTGCACCTCT+TGG | 0.424385 | 4_3:+68661045 | None:intergenic |
| GTGTTCGCAAACAGACAAAA+TGG | 0.424521 | 4_3:-68660327 | Msa0658540:intron |
| AGGATCTATGCGACAATGCC+TGG | 0.431463 | 4_3:-68658281 | Msa0658540:three_prime_UTR |
| TCGTAAGGTGCCACAATGTC+AGG | 0.450369 | 4_3:+68660133 | None:intergenic |
| ACTCATCCCATTCAGTTGTT+CGG | 0.452555 | 4_3:+68660380 | None:intergenic |
| CACAAGGTACCTCGGCTTTG+AGG | 0.456123 | 4_3:+68660579 | None:intergenic |
| CTGGTCTGGAACCTAATAAT+GGG | 0.459997 | 4_3:-68659673 | Msa0658540:CDS |
| TTTAAATGGTTTGGCCAAGT+TGG | 0.475417 | 4_3:+68658181 | None:intergenic |
| TTTATATGGGATGAAGATCT+GGG | 0.479328 | 4_3:-68660103 | Msa0658540:CDS |
| CCATTATTAGGTTCCAGACC+AGG | 0.484663 | 4_3:+68659674 | None:intergenic |
| TAGCCGGCCTATGAGAAGAT+AGG | 0.493600 | 4_3:-68659044 | Msa0658540:CDS |
| CATCAAAGTATTCCCTCGCT+AGG | 0.494743 | 4_3:-68658996 | Msa0658540:CDS |
| CTGGGACAGCGCCATGGCAA+GGG | 0.497580 | 4_3:-68658853 | Msa0658540:CDS |
| TATATGGAGCATTACCAACT+TGG | 0.497693 | 4_3:-68658195 | Msa0658540:three_prime_UTR |
| GAACGACTTGGTCCATGGAT+GGG | 0.499192 | 4_3:-68659189 | Msa0658540:CDS |
| TTTGGGTCATATAGTAGCTA+AGG | 0.500606 | 4_3:-68658386 | Msa0658540:three_prime_UTR |
| AACAACTCCTATCTTCTCAT+AGG | 0.500854 | 4_3:+68659037 | None:intergenic |
| TCTGGGACAGCGCCATGGCA+AGG | 0.502429 | 4_3:-68658854 | Msa0658540:CDS |
| AACGACTTGGTCCATGGATG+GGG | 0.508505 | 4_3:-68659188 | Msa0658540:CDS |
| AAATCAACTACATACAGTAA+AGG | 0.510352 | 4_3:+68658225 | None:intergenic |
| CTAAGACTGGTGAGAAAGCA+TGG | 0.512584 | 4_3:-68659713 | Msa0658540:CDS |
| AGAACGACTTGGTCCATGGA+TGG | 0.519691 | 4_3:-68659190 | Msa0658540:CDS |
| ATGATGGCCGAACAACTGAA+TGG | 0.523748 | 4_3:-68660387 | Msa0658540:CDS |
| TGAGTTTGAATGGTCGAAGC+AGG | 0.524504 | 4_3:-68660362 | Msa0658540:CDS |
| CTTCAGAACGACTTGGTCCA+TGG | 0.525770 | 4_3:-68659194 | Msa0658540:intron |
| TGCGATAATTGAAGCCGAGT+CGG | 0.530587 | 4_3:-68661019 | Msa0658540:CDS |
| GGTAAGGGAGAGGTGTAGAA+AGG | 0.531231 | 4_3:-68658597 | Msa0658540:CDS |
| TGAGGGTCACTGCACCATCC+TGG | 0.532680 | 4_3:+68659495 | None:intergenic |
| ATCCAAAATTTGGTGTCGAA+TGG | 0.535869 | 4_3:-68658140 | Msa0658540:three_prime_UTR |
| TATCCAATTTGGGTATTACC+AGG | 0.545459 | 4_3:+68658263 | None:intergenic |
| ACTCCTATCTTCTCATAGGC+CGG | 0.549614 | 4_3:+68659041 | None:intergenic |
| TTCAGCTCTGAAATTCTACA+TGG | 0.553398 | 4_3:+68658352 | None:intergenic |
| GGGTTGGAGATTTCACAGCC+TGG | 0.555160 | 4_3:-68659692 | Msa0658540:CDS |
| GGGAGAGGTGTAGAAAGGAG+TGG | 0.557086 | 4_3:-68658592 | Msa0658540:CDS |
| AATGGAAGGCAATGTGGTGA+TGG | 0.558330 | 4_3:+68658458 | None:intergenic |
| CTGCACAAGGAGGCAGATGA+GGG | 0.560255 | 4_3:+68659478 | None:intergenic |
| AACCTAATAATGGGCTGACA+TGG | 0.561229 | 4_3:-68659664 | Msa0658540:CDS |
| CAAGTCGTCACTGTCCCCTA+AGG | 0.562683 | 4_3:+68658488 | None:intergenic |
| CAAAGTCGAGACCCCATCCA+TGG | 0.563627 | 4_3:+68659177 | None:intergenic |
| CTGAAAGTAGAATTAAATGT+AGG | 0.564917 | 4_3:-68658334 | Msa0658540:three_prime_UTR |
| GGTAGGGAGAATCAAAATCT+GGG | 0.565368 | 4_3:-68658871 | Msa0658540:intron |
| GCTGCACAAGGAGGCAGATG+AGG | 0.566140 | 4_3:+68659477 | None:intergenic |
| GACTCGGCTTCAATTATCGC+AGG | 0.566654 | 4_3:+68661021 | None:intergenic |
| GTGAAGCATGGCGCTGCGTG+TGG | 0.567420 | 4_3:-68659346 | Msa0658540:CDS |
| TGTATGTAGTTGATTTGGAA+CGG | 0.570176 | 4_3:-68658218 | Msa0658540:three_prime_UTR |
| ATTAAACAAATCAATTCCCA+CGG | 0.574142 | 4_3:+68658520 | None:intergenic |
| GTTTCTGCATCCTGACATTG+TGG | 0.577410 | 4_3:-68660143 | Msa0658540:CDS |
| CTGAATGGGATGAGTTTGAA+TGG | 0.577703 | 4_3:-68660372 | Msa0658540:CDS |
| TGATGGCCGAACAACTGAAT+GGG | 0.581819 | 4_3:-68660386 | Msa0658540:CDS |
| TTTAGGATAGATACCTCGCT+GGG | 0.583143 | 4_3:+68660967 | None:intergenic |
| CTCTTAGGTGGTATGCTAAG+CGG | 0.583946 | 4_3:-68660165 | Msa0658540:intron |
| TGCTCTTAGAAAATGTGTTG+AGG | 0.587535 | 4_3:-68659156 | Msa0658540:intron |
| CAAAATCTGGGACAGCGCCA+TGG | 0.589604 | 4_3:-68658859 | Msa0658540:CDS |
| ATCAAAGTATTCCCTCGCTA+GGG | 0.591890 | 4_3:-68658995 | Msa0658540:CDS |
| AGAGAAACAGAGGAGAAACC+AGG | 0.592226 | 4_3:-68659513 | Msa0658540:CDS |
| GACAATGTTCCAGAGTCGAA+TGG | 0.594061 | 4_3:-68658570 | Msa0658540:CDS |
| ACTGGTGAGAAAGCATGGGT+TGG | 0.594876 | 4_3:-68659708 | Msa0658540:CDS |
| GTGGGTGCTTCAGAACGACT+TGG | 0.598325 | 4_3:-68659201 | Msa0658540:intron |
| TACCTTGTGACCTTCACTGT+CGG | 0.598517 | 4_3:-68660565 | Msa0658540:CDS |
| TGGGACAGCGCCATGGCAAG+GGG | 0.601573 | 4_3:-68658852 | Msa0658540:intron |
| CAAGTGCAGATACCTAAGAC+TGG | 0.601936 | 4_3:-68659726 | Msa0658540:intron |
| AAAATTTGGTGTCGAATGGT+TGG | 0.603042 | 4_3:-68658136 | Msa0658540:three_prime_UTR |
| TATTTCTATTAGAGAAACAG+AGG | 0.603482 | 4_3:-68659523 | Msa0658540:intron |
| CATGCTTCACGTGAAAACAC+TGG | 0.604813 | 4_3:+68659359 | None:intergenic |
| AACCGACAGTGAAGGTCACA+AGG | 0.609722 | 4_3:+68660563 | None:intergenic |
| TTGATTGCCAGGTAAGGGAG+AGG | 0.617949 | 4_3:-68658607 | Msa0658540:intron |
| TTAATTCAACTAATCCTTAG+GGG | 0.620106 | 4_3:-68658502 | Msa0658540:exon |
| TAGGAGTTGTTGATACTCAG+TGG | 0.621096 | 4_3:-68659025 | Msa0658540:CDS |
| AATGCATATTACAAAGCCGT+GGG | 0.623252 | 4_3:-68658536 | Msa0658540:CDS |
| GCGTAACATACCCCTTGCCA+TGG | 0.623581 | 4_3:+68658842 | None:intergenic |
| ATTACCTGATTCCCTAGCGA+GGG | 0.631510 | 4_3:+68658984 | None:intergenic |
| AAATGCATATTACAAAGCCG+TGG | 0.632021 | 4_3:-68658537 | Msa0658540:CDS |
| ACTGAGACTTACGCTGCACA+AGG | 0.642091 | 4_3:+68659465 | None:intergenic |
| GTGAAGGTCACAAGGTACCT+CGG | 0.642105 | 4_3:+68660571 | None:intergenic |
| TGGCAAATGACAAAGAGAAG+AGG | 0.644389 | 4_3:-68659644 | Msa0658540:CDS |
| TAAGACTGGTGAGAAAGCAT+GGG | 0.646168 | 4_3:-68659712 | Msa0658540:CDS |
| AAAGAGAAGAGGTGATCGCG+AGG | 0.653851 | 4_3:-68659633 | Msa0658540:CDS |
| CTGATCATAACCGACAGTGA+AGG | 0.660859 | 4_3:+68660555 | None:intergenic |
| AATTACCTGATTCCCTAGCG+AGG | 0.661301 | 4_3:+68658983 | None:intergenic |
| AAACAGAGGAGAAACCAGGA+TGG | 0.664062 | 4_3:-68659509 | Msa0658540:CDS |
| TCGGCTTCAATTATCGCAGG+AGG | 0.672460 | 4_3:+68661024 | None:intergenic |
| ACGCAAATAAAAGTCCGACT+CGG | 0.684493 | 4_3:+68661005 | None:intergenic |
| AGGATTTAACCTCAAAGCCG+AGG | 0.686167 | 4_3:-68660588 | Msa0658540:CDS |
| TGGGTTCCATCAAATCCAAG+AGG | 0.698276 | 4_3:-68661060 | Msa0658540:CDS |
| TTCATACACTCCATTCACAG+AGG | 0.709407 | 4_3:-68658416 | Msa0658540:three_prime_UTR |
| TGTGTAAATGGAAGGCAATG+TGG | 0.716146 | 4_3:+68658452 | None:intergenic |
| GAGACTTACGCTGCACAAGG+AGG | 0.725042 | 4_3:+68659468 | None:intergenic |
| ATTGTGGGGTGAGCCCAGCG+AGG | 0.759305 | 4_3:-68660980 | Msa0658540:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATATTAAAAAAGAAAAAA+GGG | + | chr4_3:68659911-68659930 | None:intergenic | 10.0% |
| !! | AGTATATTAAAAAAGAAAAA+AGG | + | chr4_3:68659912-68659931 | None:intergenic | 10.0% |
| !! | TATCAAGTATATTTAACAAA+AGG | + | chr4_3:68658405-68658424 | None:intergenic | 15.0% |
| !!! | AGCAAAATATTTTTTAAGTT+AGG | + | chr4_3:68658973-68658992 | None:intergenic | 15.0% |
| !!! | TTACGACTATATTTTTATAT+GGG | - | chr4_3:68659091-68659110 | Msa0658540:intron | 15.0% |
| !! | GCAAAAAATTAACATATAAT+TGG | + | chr4_3:68659235-68659254 | None:intergenic | 15.0% |
| !!! | TGTTGTCTTATAATTTTTTA+TGG | - | chr4_3:68659973-68659992 | Msa0658540:intron | 15.0% |
| !! | CATATAAAAATATAGTCGTA+AGG | + | chr4_3:68659092-68659111 | None:intergenic | 20.0% |
| !!! | CTTACGACTATATTTTTATA+TGG | - | chr4_3:68659090-68659109 | Msa0658540:intron | 20.0% |
| !! | TTGTTAATCCTTCAAAAAAA+AGG | - | chr4_3:68659301-68659320 | Msa0658540:intron | 20.0% |
| !! | GTCAAAGTTGTTAAATTATT+TGG | - | chr4_3:68659323-68659342 | Msa0658540:intron | 20.0% |
| !! | TTCTCTAATAGAAATAAAGA+AGG | + | chr4_3:68659680-68659699 | None:intergenic | 20.0% |
| !! | CTAGATAAATTAAAGTAATG+AGG | + | chr4_3:68660087-68660106 | None:intergenic | 20.0% |
| !! | GAAAAAACAAATAAGAATCT+TGG | + | chr4_3:68660309-68660328 | None:intergenic | 20.0% |
| !! | TACAAATATATATATGCTGA+TGG | - | chr4_3:68660566-68660585 | Msa0658540:CDS | 20.0% |
| !! | TTTAATTCAACTAATCCTTA+GGG | - | chr4_3:68660704-68660723 | Msa0658540:intron | 20.0% |
| !!! | TTTGATTGTAATGTTCTTTT+AGG | - | chr4_3:68660906-68660925 | Msa0658540:intron | 20.0% |
| !!! | TTGTGATTTTTTAAATGGTT+TGG | + | chr4_3:68661038-68661057 | None:intergenic | 20.0% |
| !!! | TGAACTTGTGATTTTTTAAA+TGG | + | chr4_3:68661043-68661062 | None:intergenic | 20.0% |
| !! | TTAAAAAATCACAAGTTCAA+AGG | - | chr4_3:68661044-68661063 | Msa0658540:CDS | 20.0% |
| !!! | TTCATTTTTATCTGCAGATT+TGG | - | chr4_3:68658127-68658146 | Msa0658540:three_prime_UTR | 25.0% |
| !!! | TCATTTTTATCTGCAGATTT+GGG | - | chr4_3:68658128-68658147 | Msa0658540:three_prime_UTR | 25.0% |
| ! | ATGCAGTTAAGTACATATTA+AGG | - | chr4_3:68658311-68658330 | Msa0658540:three_prime_UTR | 25.0% |
| !!! | AGCTACTAAAACTTGTTAAA+GGG | - | chr4_3:68658346-68658365 | Msa0658540:three_prime_UTR | 25.0% |
| ! | TTGATTCAATCTTGGATTTA+TGG | + | chr4_3:68658440-68658459 | None:intergenic | 25.0% |
| !!! | TGTTATTTTGAACAGTTTTC+AGG | - | chr4_3:68658771-68658790 | Msa0658540:intron | 25.0% |
| !!! | GTTATTTTGAACAGTTTTCA+GGG | - | chr4_3:68658772-68658791 | Msa0658540:intron | 25.0% |
| !!! | TTATTTTGAACAGTTTTCAG+GGG | - | chr4_3:68658773-68658792 | Msa0658540:intron | 25.0% |
| ! | ATACTTCTGTTTCATTATGA+TGG | - | chr4_3:68658804-68658823 | Msa0658540:intron | 25.0% |
| !! | TTAAGTTAGGCAAACAATTT+TGG | + | chr4_3:68658960-68658979 | None:intergenic | 25.0% |
| !!! | TTTTAATTTAATTGCTGCCA+TGG | - | chr4_3:68659272-68659291 | Msa0658540:intron | 25.0% |
| !!! | AACTTTGACCTTTTTTTTGA+AGG | + | chr4_3:68659312-68659331 | None:intergenic | 25.0% |
| !! | TATTTCTATTAGAGAAACAG+AGG | - | chr4_3:68659684-68659703 | Msa0658540:CDS | 25.0% |
| ! | CACAATTATTATATACAGCA+TGG | + | chr4_3:68659797-68659816 | None:intergenic | 25.0% |
| ! | TCCATGATTATTATTCTTGT+TGG | - | chr4_3:68660252-68660271 | Msa0658540:intron | 25.0% |
| ! | ACCAACAAGAATAATAATCA+TGG | + | chr4_3:68660256-68660275 | None:intergenic | 25.0% |
| ! | TGATTATTATTCTTGTTGGT+CGG | - | chr4_3:68660256-68660275 | Msa0658540:intron | 25.0% |
| !!! | TTATTTGTTTTTTCGTGCTT+TGG | - | chr4_3:68660315-68660334 | Msa0658540:intron | 25.0% |
| !! | TTACGCATTTTCATATAGTT+CGG | - | chr4_3:68660382-68660401 | Msa0658540:CDS | 25.0% |
| ! | ATTAATAAACCAAAGAGACT+AGG | + | chr4_3:68660416-68660435 | None:intergenic | 25.0% |
| ! | ATTAAACAAATCAATTCCCA+CGG | + | chr4_3:68660690-68660709 | None:intergenic | 25.0% |
| ! | GTTTAATTCAACTAATCCTT+AGG | - | chr4_3:68660703-68660722 | Msa0658540:intron | 25.0% |
| ! | TTAATTCAACTAATCCTTAG+GGG | - | chr4_3:68660705-68660724 | Msa0658540:intron | 25.0% |
| !! | ACATATTTTTCGTGTGTAAA+TGG | + | chr4_3:68660770-68660789 | None:intergenic | 25.0% |
| ! | CTGAAAGTAGAATTAAATGT+AGG | - | chr4_3:68660873-68660892 | Msa0658540:intron | 25.0% |
| ! | TTAATAGTCGTATCCAATTT+GGG | + | chr4_3:68660957-68660976 | None:intergenic | 25.0% |
| ! | AATCAACTACATACAGTAAA+GGG | + | chr4_3:68660984-68661003 | None:intergenic | 25.0% |
| ! | AAATCAACTACATACAGTAA+AGG | + | chr4_3:68660985-68661004 | None:intergenic | 25.0% |
| ! | TTTACTGTATGTAGTTGATT+TGG | - | chr4_3:68660984-68661003 | Msa0658540:CDS | 25.0% |
| !! | ACTTTTATTTGCGTAGATTG+TGG | - | chr4_3:68658211-68658230 | Msa0658540:three_prime_UTR | 30.0% |
| !! | CTTTTATTTGCGTAGATTGT+GGG | - | chr4_3:68658212-68658231 | Msa0658540:three_prime_UTR | 30.0% |
| !! | TTTTATTTGCGTAGATTGTG+GGG | - | chr4_3:68658213-68658232 | Msa0658540:three_prime_UTR | 30.0% |
| !! | ATAAGCATGTAAGCCATTTT+AGG | + | chr4_3:68658260-68658279 | None:intergenic | 30.0% |
| !! | TTAACAAGTTTTAGTAGCTG+TGG | + | chr4_3:68658345-68658364 | None:intergenic | 30.0% |
| !! | CAGCTACTAAAACTTGTTAA+AGG | - | chr4_3:68658345-68658364 | Msa0658540:three_prime_UTR | 30.0% |
| !! | GCTACTAAAACTTGTTAAAG+GGG | - | chr4_3:68658347-68658366 | Msa0658540:three_prime_UTR | 30.0% |
| CAGAGAATATGCTTCAAAAA+CGG | + | chr4_3:68658379-68658398 | None:intergenic | 30.0% | |
| AATCCAAGATTGAATCAAGT+TGG | - | chr4_3:68658442-68658461 | Msa0658540:three_prime_UTR | 30.0% | |
| !! | GAGTTTATGTTTCTGGTATT+AGG | - | chr4_3:68658520-68658539 | Msa0658540:CDS | 30.0% |
| !!! | TAGGTCAATTTTGAAACTCT+TGG | - | chr4_3:68658539-68658558 | Msa0658540:CDS | 30.0% |
| !!! | CAATTTTGAAACTCTTGGAT+TGG | - | chr4_3:68658544-68658563 | Msa0658540:CDS | 30.0% |
| ! | TTTTATATGGGATGAAGATC+TGG | - | chr4_3:68659103-68659122 | Msa0658540:intron | 30.0% |
| TTTATATGGGATGAAGATCT+GGG | - | chr4_3:68659104-68659123 | Msa0658540:intron | 30.0% | |
| AGGATTAACAAATTTGACCA+TGG | + | chr4_3:68659292-68659311 | None:intergenic | 30.0% | |
| AATGAGTAGTTATATGCCTA+AGG | - | chr4_3:68659408-68659427 | Msa0658540:intron | 30.0% | |
| GCAGAAGAAAAAAAATCCTT+AGG | + | chr4_3:68659427-68659446 | None:intergenic | 30.0% | |
| !!! | TTTTTATGGTTTTGACGTTG+TGG | - | chr4_3:68659987-68660006 | Msa0658540:intron | 30.0% |
| !!! | TTTTATGGTTTTGACGTTGT+GGG | - | chr4_3:68659988-68660007 | Msa0658540:intron | 30.0% |
| ATCAAGAAGTTGTGTCATAA+TGG | - | chr4_3:68660509-68660528 | Msa0658540:intron | 30.0% | |
| ! | ATTTTTCGTGTGTAAATGGA+AGG | + | chr4_3:68660766-68660785 | None:intergenic | 30.0% |
| AAAAAACAATCCTCTGTGAA+TGG | + | chr4_3:68660804-68660823 | None:intergenic | 30.0% | |
| !!! | ATTCACAGAGGATTGTTTTT+TGG | - | chr4_3:68660803-68660822 | Msa0658540:intron | 30.0% |
| !!! | TTCACAGAGGATTGTTTTTT+GGG | - | chr4_3:68660804-68660823 | Msa0658540:intron | 30.0% |
| CTTAATAGTCGTATCCAATT+TGG | + | chr4_3:68660958-68660977 | None:intergenic | 30.0% | |
| !! | TGTATGTAGTTGATTTGGAA+CGG | - | chr4_3:68660989-68661008 | Msa0658540:CDS | 30.0% |
| AGTTCAAAGGATCCAAAATT+TGG | - | chr4_3:68661057-68661076 | Msa0658540:CDS | 30.0% | |
| ! | TTTTAGTAGCTGTGGAAACA+AGG | + | chr4_3:68658337-68658356 | None:intergenic | 35.0% |
| CTTCCAACTTGATTCAATCT+TGG | + | chr4_3:68658448-68658467 | None:intergenic | 35.0% | |
| ! | ACAGAAGAGCACATATTGTA+GGG | + | chr4_3:68658492-68658511 | None:intergenic | 35.0% |
| ! | AACAGAAGAGCACATATTGT+AGG | + | chr4_3:68658493-68658512 | None:intergenic | 35.0% |
| CTAGCTTGAGTTTATGTTTC+TGG | - | chr4_3:68658513-68658532 | Msa0658540:CDS | 35.0% | |
| TTGATTAAGTTACCACTCAC+AGG | - | chr4_3:68658599-68658618 | Msa0658540:CDS | 35.0% | |
| TATTGATGCAGCTGTGAAAA+AGG | - | chr4_3:68658683-68658702 | Msa0658540:intron | 35.0% | |
| CCATATTCATGTTCAAGCAA+TGG | + | chr4_3:68658913-68658932 | None:intergenic | 35.0% | |
| CCATTGCTTGAACATGAATA+TGG | - | chr4_3:68658910-68658929 | Msa0658540:intron | 35.0% | |
| ! | AGTTAGGCAAACAATTTTGG+TGG | + | chr4_3:68658957-68658976 | None:intergenic | 35.0% |
| ! | AGTTGATTGTTTTCCCTCTT+AGG | - | chr4_3:68659027-68659046 | Msa0658540:CDS | 35.0% |
| !! | TGTTGAGCATTTTAATGCAG+AGG | - | chr4_3:68659127-68659146 | Msa0658540:intron | 35.0% |
| !!! | TCTTCTGCTTTTTCTCACAA+AGG | - | chr4_3:68659439-68659458 | Msa0658540:intron | 35.0% |
| AGGTATCTGCACTTGAAATT+AGG | + | chr4_3:68659476-68659495 | None:intergenic | 35.0% | |
| AATAATTGTGCTATGCATGC+AGG | - | chr4_3:68659807-68659826 | Msa0658540:intron | 35.0% | |
| !! | ATGCAGGTTTGTTGAGATTA+TGG | - | chr4_3:68659823-68659842 | Msa0658540:intron | 35.0% |
| TGCTCTTAGAAAATGTGTTG+AGG | - | chr4_3:68660051-68660070 | Msa0658540:intron | 35.0% | |
| AACAACTCCTATCTTCTCAT+AGG | + | chr4_3:68660173-68660192 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTTCGTGCTTTGGT+AGG | - | chr4_3:68660319-68660338 | Msa0658540:intron | 35.0% |
| !!! | TGTTTTTTCGTGCTTTGGTA+GGG | - | chr4_3:68660320-68660339 | Msa0658540:intron | 35.0% |
| CAAGCAAAATATCAGATGGA+GGG | + | chr4_3:68660453-68660472 | None:intergenic | 35.0% | |
| CAAGCAAGCAAAATATCAGA+TGG | + | chr4_3:68660457-68660476 | None:intergenic | 35.0% | |
| AAATGCATATTACAAAGCCG+TGG | - | chr4_3:68660670-68660689 | Msa0658540:intron | 35.0% | |
| AATGCATATTACAAAGCCGT+GGG | - | chr4_3:68660671-68660690 | Msa0658540:intron | 35.0% | |
| TTTGGGTCATATAGTAGCTA+AGG | - | chr4_3:68660821-68660840 | Msa0658540:intron | 35.0% | |
| !! | TTCAGCTCTGAAATTCTACA+TGG | + | chr4_3:68660858-68660877 | None:intergenic | 35.0% |
| TATCCAATTTGGGTATTACC+AGG | + | chr4_3:68660947-68660966 | None:intergenic | 35.0% | |
| !! | AGTTGATTTGGAACGGTATA+TGG | - | chr4_3:68660996-68661015 | Msa0658540:CDS | 35.0% |
| ! | TATATGGAGCATTACCAACT+TGG | - | chr4_3:68661012-68661031 | Msa0658540:CDS | 35.0% |
| ! | TTTAAATGGTTTGGCCAAGT+TGG | + | chr4_3:68661029-68661048 | None:intergenic | 35.0% |
| !! | ATCCAAAATTTGGTGTCGAA+TGG | - | chr4_3:68661067-68661086 | Msa0658540:CDS | 35.0% |
| ! | AACCATTCGACACCAAATTT+TGG | + | chr4_3:68661072-68661091 | None:intergenic | 35.0% |
| !! | AAAATTTGGTGTCGAATGGT+TGG | - | chr4_3:68661071-68661090 | Msa0658540:CDS | 35.0% |
| ACGCAAATAAAAGTCCGACT+CGG | + | chr4_3:68658205-68658224 | None:intergenic | 40.0% | |
| ! | TTTAGGATAGATACCTCGCT+GGG | + | chr4_3:68658243-68658262 | None:intergenic | 40.0% |
| !!! | TTTTAGGATAGATACCTCGC+TGG | + | chr4_3:68658244-68658263 | None:intergenic | 40.0% |
| ! | GCGAGGTATCTATCCTAAAA+TGG | - | chr4_3:68658244-68658263 | Msa0658540:three_prime_UTR | 40.0% |
| !! | AATCAAGTTGGAAGAGACTG+TGG | - | chr4_3:68658454-68658473 | Msa0658540:three_prime_UTR | 40.0% |
| ! | TTGAAACTCTTGGATTGGAG+AGG | - | chr4_3:68658549-68658568 | Msa0658540:CDS | 40.0% |
| TTGAGGTTAAATCCTGTGAG+TGG | + | chr4_3:68658614-68658633 | None:intergenic | 40.0% | |
| ACTCATCCCATTCAGTTGTT+CGG | + | chr4_3:68658830-68658849 | None:intergenic | 40.0% | |
| CTGAATGGGATGAGTTTGAA+TGG | - | chr4_3:68658835-68658854 | Msa0658540:intron | 40.0% | |
| GTGTTCGCAAACAGACAAAA+TGG | - | chr4_3:68658880-68658899 | Msa0658540:intron | 40.0% | |
| ! | TGATTGTTTTCCCTCTTAGG+TGG | - | chr4_3:68659030-68659049 | Msa0658540:CDS | 40.0% |
| ! | TAAGACTGGTGAGAAAGCAT+GGG | - | chr4_3:68659495-68659514 | Msa0658540:CDS | 40.0% |
| ! | CTGGTCTGGAACCTAATAAT+GGG | - | chr4_3:68659534-68659553 | Msa0658540:intron | 40.0% |
| !! | AACCTAATAATGGGCTGACA+TGG | - | chr4_3:68659543-68659562 | Msa0658540:intron | 40.0% |
| TGGCAAATGACAAAGAGAAG+AGG | - | chr4_3:68659563-68659582 | Msa0658540:intron | 40.0% | |
| ATTCAATCCCCACTTTCTTC+TGG | - | chr4_3:68659619-68659638 | Msa0658540:intron | 40.0% | |
| AACAAGCACCAGAAGAAAGT+GGG | + | chr4_3:68659630-68659649 | None:intergenic | 40.0% | |
| TAACAAGCACCAGAAGAAAG+TGG | + | chr4_3:68659631-68659650 | None:intergenic | 40.0% | |
| ! | TGGCATATGATTCAGGTTTG+AGG | - | chr4_3:68659881-68659900 | Msa0658540:intron | 40.0% |
| TAGGAGTTGTTGATACTCAG+TGG | - | chr4_3:68660182-68660201 | Msa0658540:intron | 40.0% | |
| ! | ATCAAAGTATTCCCTCGCTA+GGG | - | chr4_3:68660212-68660231 | Msa0658540:intron | 40.0% |
| TGGTAGGGAGAATCAAAATC+TGG | - | chr4_3:68660335-68660354 | Msa0658540:CDS | 40.0% | |
| GGTAGGGAGAATCAAAATCT+GGG | - | chr4_3:68660336-68660355 | Msa0658540:CDS | 40.0% | |
| GCAAGCAAAATATCAGATGG+AGG | + | chr4_3:68660454-68660473 | None:intergenic | 40.0% | |
| ! | TTTAAACGCTGTTGATTGCC+AGG | - | chr4_3:68660589-68660608 | Msa0658540:CDS | 40.0% |
| TGTGTAAATGGAAGGCAATG+TGG | + | chr4_3:68660758-68660777 | None:intergenic | 40.0% | |
| TTCATACACTCCATTCACAG+AGG | - | chr4_3:68660791-68660810 | Msa0658540:intron | 40.0% | |
| ATGCCTGGTAATACCCAAAT+TGG | - | chr4_3:68660941-68660960 | Msa0658540:intron | 40.0% | |
| TGGGTTCCATCAAATCCAAG+AGG | - | chr4_3:68658147-68658166 | Msa0658540:three_prime_UTR | 45.0% | |
| TCTGCACCTCTTGGATTTGA+TGG | + | chr4_3:68658156-68658175 | None:intergenic | 45.0% | |
| GGTAATCTTTCTGCACCTCT+TGG | + | chr4_3:68658165-68658184 | None:intergenic | 45.0% | |
| TGCGATAATTGAAGCCGAGT+CGG | - | chr4_3:68658188-68658207 | Msa0658540:three_prime_UTR | 45.0% | |
| AGGATTTAACCTCAAAGCCG+AGG | - | chr4_3:68658619-68658638 | Msa0658540:intron | 45.0% | |
| TACCTTGTGACCTTCACTGT+CGG | - | chr4_3:68658642-68658661 | Msa0658540:intron | 45.0% | |
| CTGATCATAACCGACAGTGA+AGG | + | chr4_3:68658655-68658674 | None:intergenic | 45.0% | |
| ATGATGGCCGAACAACTGAA+TGG | - | chr4_3:68658820-68658839 | Msa0658540:intron | 45.0% | |
| TGATGGCCGAACAACTGAAT+GGG | - | chr4_3:68658821-68658840 | Msa0658540:intron | 45.0% | |
| TGAGTTTGAATGGTCGAAGC+AGG | - | chr4_3:68658845-68658864 | Msa0658540:intron | 45.0% | |
| GCTTAGCATACCACCTAAGA+GGG | + | chr4_3:68659043-68659062 | None:intergenic | 45.0% | |
| CTCTTAGGTGGTATGCTAAG+CGG | - | chr4_3:68659042-68659061 | Msa0658540:CDS | 45.0% | |
| GTTTCTGCATCCTGACATTG+TGG | - | chr4_3:68659064-68659083 | Msa0658540:intron | 45.0% | |
| CAAGTGCAGATACCTAAGAC+TGG | - | chr4_3:68659481-68659500 | Msa0658540:CDS | 45.0% | |
| CATGCTTTCTCACCAGTCTT+AGG | + | chr4_3:68659496-68659515 | None:intergenic | 45.0% | |
| CTAAGACTGGTGAGAAAGCA+TGG | - | chr4_3:68659494-68659513 | Msa0658540:CDS | 45.0% | |
| CCATTATTAGGTTCCAGACC+AGG | + | chr4_3:68659536-68659555 | None:intergenic | 45.0% | |
| ! | CCTGGTCTGGAACCTAATAA+TGG | - | chr4_3:68659533-68659552 | Msa0658540:intron | 45.0% |
| TGCCATGTCAGCCCATTATT+AGG | + | chr4_3:68659548-68659567 | None:intergenic | 45.0% | |
| ACAAGCACCAGAAGAAAGTG+GGG | + | chr4_3:68659629-68659648 | None:intergenic | 45.0% | |
| AGAGAAACAGAGGAGAAACC+AGG | - | chr4_3:68659694-68659713 | Msa0658540:CDS | 45.0% | |
| AAACAGAGGAGAAACCAGGA+TGG | - | chr4_3:68659698-68659717 | Msa0658540:CDS | 45.0% | |
| CATGCTTCACGTGAAAACAC+TGG | + | chr4_3:68659851-68659870 | None:intergenic | 45.0% | |
| ! | CAGTGTTTTCACGTGAAGCA+TGG | - | chr4_3:68659849-68659868 | Msa0658540:intron | 45.0% |
| ACTCCTATCTTCTCATAGGC+CGG | + | chr4_3:68660169-68660188 | None:intergenic | 45.0% | |
| ! | CATCAAAGTATTCCCTCGCT+AGG | - | chr4_3:68660211-68660230 | Msa0658540:intron | 45.0% |
| ATTACCTGATTCCCTAGCGA+GGG | + | chr4_3:68660226-68660245 | None:intergenic | 45.0% | |
| AATTACCTGATTCCCTAGCG+AGG | + | chr4_3:68660227-68660246 | None:intergenic | 45.0% | |
| GCTTGACATCCTAGTCTCTT+TGG | - | chr4_3:68660404-68660423 | Msa0658540:CDS | 45.0% | |
| GACAATGTTCCAGAGTCGAA+TGG | - | chr4_3:68660637-68660656 | Msa0658540:intron | 45.0% | |
| AATGGAAGGCAATGTGGTGA+TGG | + | chr4_3:68660752-68660771 | None:intergenic | 45.0% | |
| ! | TGTCGAATGGTTGGCTGTTA+TGG | - | chr4_3:68661080-68661099 | Msa0658540:CDS | 45.0% |
| TCGGCTTCAATTATCGCAGG+AGG | + | chr4_3:68658186-68658205 | None:intergenic | 50.0% | |
| GACTCGGCTTCAATTATCGC+AGG | + | chr4_3:68658189-68658208 | None:intergenic | 50.0% | |
| ! | GTGAAGGTCACAAGGTACCT+CGG | + | chr4_3:68658639-68658658 | None:intergenic | 50.0% |
| AACCGACAGTGAAGGTCACA+AGG | + | chr4_3:68658647-68658666 | None:intergenic | 50.0% | |
| CTCTCTCGCTCTCATTGTGT+TGG | - | chr4_3:68658722-68658741 | Msa0658540:intron | 50.0% | |
| CGCTTAGCATACCACCTAAG+AGG | + | chr4_3:68659044-68659063 | None:intergenic | 50.0% | |
| ! | TCGTAAGGTGCCACAATGTC+AGG | + | chr4_3:68659077-68659096 | None:intergenic | 50.0% |
| ! | ACTGGTGAGAAAGCATGGGT+TGG | - | chr4_3:68659499-68659518 | Msa0658540:CDS | 50.0% |
| AAAGAGAAGAGGTGATCGCG+AGG | - | chr4_3:68659574-68659593 | Msa0658540:intron | 50.0% | |
| ACTGAGACTTACGCTGCACA+AGG | + | chr4_3:68659745-68659764 | None:intergenic | 50.0% | |
| CTGCGTGTGGCATATGATTC+AGG | - | chr4_3:68659874-68659893 | Msa0658540:intron | 50.0% | |
| !! | CTTCAGAACGACTTGGTCCA+TGG | - | chr4_3:68660013-68660032 | Msa0658540:intron | 50.0% |
| !! | AGAACGACTTGGTCCATGGA+TGG | - | chr4_3:68660017-68660036 | Msa0658540:intron | 50.0% |
| !! | GAACGACTTGGTCCATGGAT+GGG | - | chr4_3:68660018-68660037 | Msa0658540:intron | 50.0% |
| !! | AACGACTTGGTCCATGGATG+GGG | - | chr4_3:68660019-68660038 | Msa0658540:intron | 50.0% |
| TAGCCGGCCTATGAGAAGAT+AGG | - | chr4_3:68660163-68660182 | Msa0658540:intron | 50.0% | |
| TATTCCCTCGCTAGGGAATC+AGG | - | chr4_3:68660219-68660238 | Msa0658540:intron | 50.0% | |
| ! | ACGCTGTTGATTGCCAGGTA+AGG | - | chr4_3:68660594-68660613 | Msa0658540:intron | 50.0% |
| ! | CGCTGTTGATTGCCAGGTAA+GGG | - | chr4_3:68660595-68660614 | Msa0658540:intron | 50.0% |
| TTGATTGCCAGGTAAGGGAG+AGG | - | chr4_3:68660600-68660619 | Msa0658540:intron | 50.0% | |
| TTCTACACCTCTCCCTTACC+TGG | + | chr4_3:68660610-68660629 | None:intergenic | 50.0% | |
| ! | GGTAAGGGAGAGGTGTAGAA+AGG | - | chr4_3:68660610-68660629 | Msa0658540:intron | 50.0% |
| AGGATCTATGCGACAATGCC+TGG | - | chr4_3:68660926-68660945 | Msa0658540:intron | 50.0% | |
| ! | CACAAGGTACCTCGGCTTTG+AGG | + | chr4_3:68658631-68658650 | None:intergenic | 55.0% |
| GGGTTGGAGATTTCACAGCC+TGG | - | chr4_3:68659515-68659534 | Msa0658540:intron | 55.0% | |
| GGAGATTTCACAGCCTGGTC+TGG | - | chr4_3:68659520-68659539 | Msa0658540:intron | 55.0% | |
| CTGCACAAGGAGGCAGATGA+GGG | + | chr4_3:68659732-68659751 | None:intergenic | 55.0% | |
| GAGACTTACGCTGCACAAGG+AGG | + | chr4_3:68659742-68659761 | None:intergenic | 55.0% | |
| GTGGGTGCTTCAGAACGACT+TGG | - | chr4_3:68660006-68660025 | Msa0658540:intron | 55.0% | |
| CAAAGTCGAGACCCCATCCA+TGG | + | chr4_3:68660033-68660052 | None:intergenic | 55.0% | |
| ACTTCCCTCTGTCGTGTAGC+CGG | - | chr4_3:68660147-68660166 | Msa0658540:CDS | 55.0% | |
| ! | CAAAATCTGGGACAGCGCCA+TGG | - | chr4_3:68660348-68660367 | Msa0658540:CDS | 55.0% |
| GCGTAACATACCCCTTGCCA+TGG | + | chr4_3:68660368-68660387 | None:intergenic | 55.0% | |
| ! | GGGAGAGGTGTAGAAAGGAG+TGG | - | chr4_3:68660615-68660634 | Msa0658540:intron | 55.0% |
| CAAGTCGTCACTGTCCCCTA+AGG | + | chr4_3:68660722-68660741 | None:intergenic | 55.0% | |
| TGAGGGTCACTGCACCATCC+TGG | + | chr4_3:68659715-68659734 | None:intergenic | 60.0% | |
| GCTGCACAAGGAGGCAGATG+AGG | + | chr4_3:68659733-68659752 | None:intergenic | 60.0% | |
| TAGGCCGGCTACACGACAGA+GGG | + | chr4_3:68660154-68660173 | None:intergenic | 60.0% | |
| ATAGGCCGGCTACACGACAG+AGG | + | chr4_3:68660155-68660174 | None:intergenic | 60.0% | |
| ATTGTGGGGTGAGCCCAGCG+AGG | - | chr4_3:68658227-68658246 | Msa0658540:three_prime_UTR | 65.0% | |
| GTGAAGCATGGCGCTGCGTG+TGG | - | chr4_3:68659861-68659880 | Msa0658540:intron | 65.0% | |
| ! | TCTGGGACAGCGCCATGGCA+AGG | - | chr4_3:68660353-68660372 | Msa0658540:CDS | 65.0% |
| CTGGGACAGCGCCATGGCAA+GGG | - | chr4_3:68660354-68660373 | Msa0658540:CDS | 65.0% | |
| TGGGACAGCGCCATGGCAAG+GGG | - | chr4_3:68660355-68660374 | Msa0658540:CDS | 65.0% | |
| CTGCACGCGCCATTCGACTC+TGG | + | chr4_3:68660649-68660668 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 68658111 | 68661118 | 68658111 | ID=Msa0658540;Name=Msa0658540 |
| chr4_3 | mRNA | 68658111 | 68661118 | 68658111 | ID=Msa0658540-mRNA-1;Parent=Msa0658540;Name=Msa0658540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0.90|1|1|1|11|394|318 |
| chr4_3 | exon | 68658111 | 68658618 | 68658111 | ID=Msa0658540-mRNA-1:exon:19962;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68658853 | 68658888 | 68658853 | ID=Msa0658540-mRNA-1:exon:19961;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68658989 | 68659063 | 68658989 | ID=Msa0658540-mRNA-1:exon:19960;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68659157 | 68659210 | 68659157 | ID=Msa0658540-mRNA-1:exon:19959;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68659334 | 68659400 | 68659334 | ID=Msa0658540-mRNA-1:exon:19958;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68659477 | 68659533 | 68659477 | ID=Msa0658540-mRNA-1:exon:19957;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68659626 | 68659739 | 68659626 | ID=Msa0658540-mRNA-1:exon:19956;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68660079 | 68660180 | 68660079 | ID=Msa0658540-mRNA-1:exon:19955;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68660328 | 68660443 | 68660328 | ID=Msa0658540-mRNA-1:exon:19954;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68660525 | 68660608 | 68660525 | ID=Msa0658540-mRNA-1:exon:19953;Parent=Msa0658540-mRNA-1 |
| chr4_3 | exon | 68660981 | 68661118 | 68660981 | ID=Msa0658540-mRNA-1:exon:19952;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68660981 | 68661118 | 68660981 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68660525 | 68660608 | 68660525 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68660328 | 68660443 | 68660328 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68660079 | 68660180 | 68660079 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68659626 | 68659739 | 68659626 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68659477 | 68659533 | 68659477 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68659334 | 68659400 | 68659334 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68659157 | 68659210 | 68659157 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68658989 | 68659063 | 68658989 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68658853 | 68658888 | 68658853 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | CDS | 68658505 | 68658618 | 68658505 | ID=Msa0658540-mRNA-1:cds;Parent=Msa0658540-mRNA-1 |
| chr4_3 | three_prime_UTR | 68658111 | 68658504 | 68658111 | ID=Msa0658540-mRNA-1:three_prime_utr;Parent=Msa0658540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
