AlfalfaGEDB | Msa0507680

M. sativa cultivar zhongmu-4 / Msa0507680

KEGG: -
GO: GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141
PFAM: PF03470.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507680	XP_024635193.1	97.969	640	13	0	1	640	1	640	0.0	1290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507680	sp\|Q8VZ79\|IDN2_ARATH	55.732	628	272	3	16	639	21	646	0.0	704

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507680	A0A072UZ29	97.969	640	13	0	1	640	1	640	0.0	1290

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa0507680	0.805467	1.316104e-49	-8.615850e-47
Msa0000550	Msa0507680	-0.829516	4.927385e-55	-8.615850e-47
Msa0001590	Msa0507680	0.825030	5.853682e-54	-8.615850e-47
Msa0001780	Msa0507680	0.813981	1.943910e-51	-8.615850e-47
Msa0002490	Msa0507680	0.826855	2.157647e-54	-8.615850e-47
Msa0003700	Msa0507680	0.869746	2.458088e-66	-8.615850e-47
Msa0003720	Msa0507680	0.816694	4.846276e-52	-8.615850e-47
Msa0003890	Msa0507680	0.851350	9.400557e-61	-8.615850e-47
Msa0004640	Msa0507680	0.804094	2.547346e-49	-8.615850e-47
Msa0004860	Msa0507680	0.819269	1.269414e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507680	MtrunA17_Chr3g0111661	97.969	640	13	0	1	640	1	640	0.0	1290
Msa0507680	MtrunA17_Chr5g0435301	64.319	653	214	6	5	640	472	1122	0.0	832
Msa0507680	MtrunA17_Chr5g0435301	57.407	108	45	1	4	110	231	338	1.59e-30	128
Msa0507680	MtrunA17_Chr5g0435301	50.000	138	52	4	1	127	117	248	1.60e-29	125
Msa0507680	MtrunA17_Chr5g0435301	52.542	118	53	2	2	116	350	467	3.03e-29	124
Msa0507680	MtrunA17_Chr5g0435301	55.963	109	46	2	1	108	1	108	3.76e-28	120
Msa0507680	MtrunA17_Chr4g0001231	42.926	622	328	10	22	637	22	622	7.50e-162	478
Msa0507680	MtrunA17_Chr4g0074301	42.173	626	337	8	19	637	19	626	3.19e-160	474
Msa0507680	MtrunA17_Chr4g0070931	42.357	628	333	9	19	637	19	626	2.65e-158	469
Msa0507680	MtrunA17_Chr2g0328251	37.861	692	350	14	13	636	10	689	4.29e-135	411

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507680	AT3G48670.2	55.732	628	272	3	16	639	21	646	0.0	704
Msa0507680	AT3G48670.1	55.732	628	272	3	16	639	21	646	0.0	704
Msa0507680	AT3G48670.3	55.732	628	272	3	16	639	21	646	0.0	704
Msa0507680	AT3G12550.5	50.786	636	297	7	13	636	2	633	0.0	624
Msa0507680	AT3G12550.4	50.706	637	297	7	13	636	2	634	0.0	624
Msa0507680	AT3G12550.2	50.706	637	297	7	13	636	2	634	0.0	624
Msa0507680	AT3G12550.1	50.706	637	297	7	13	636	2	634	0.0	624
Msa0507680	AT3G12550.3	49.647	566	270	6	13	567	2	563	0.0	542
Msa0507680	AT1G15910.1	39.641	613	361	7	18	628	17	622	8.93e-144	432
Msa0507680	AT4G00380.1	40.033	612	359	6	19	628	18	623	8.46e-143	429

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Find 159 sgRNAs with CRISPR-Local

Find 512 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCATATAGTGCCGTGG+TGG	0.703811	3_4:+55317997	Msa0507680:CDS
AAAGTTGCTAGAAGAGATGG+AGG	0.496394	3_4:+55314570	Msa0507680:CDS
AAATATTAGGGATTTGACAA+TGG	0.572482	3_4:-55311775	None:intergenic
AACTCCTGCAACATGCTTCT+GGG	0.355105	3_4:+55313235	Msa0507680:CDS
AAGAAAGTTGCTAGAAGAGA+TGG	0.445164	3_4:+55314567	Msa0507680:CDS
AAGAGAAAAGGCTACTCATT+TGG	0.397330	3_4:+55313290	Msa0507680:CDS
AAGGTAGATGATTTGCATAT+GGG	0.455418	3_4:+55315900	Msa0507680:CDS
AAGTAGAAGGAAAATGGATC+TGG	0.472707	3_4:-55311870	None:intergenic
AAGTCAGAATGTGAAAACCT+CGG	0.672200	3_4:+55313152	Msa0507680:CDS
AATAATTTGTGCATGGCGGC+TGG	0.461442	3_4:+55319224	Msa0507680:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAGGTTCTCAAAATATT+AGG	-	chr3_4:55311791-55311810	None:intergenic	30.0%
AATTGGAAGTAGAAGGAAAA+TGG	-	chr3_4:55311879-55311898	None:intergenic	30.0%
AAATAAGACAGACAGGATTT+AGG	+	chr3_4:55312539-55312558	Msa0507680:intron	30.0%
AATAAGACAGACAGGATTTA+GGG	+	chr3_4:55312540-55312559	Msa0507680:intron	30.0%
AATAAGCTGTTTATCCAAAC+AGG	-	chr3_4:55312566-55312585	None:intergenic	30.0%
CTTATCTACTGGCATAAATT+TGG	-	chr3_4:55312942-55312961	None:intergenic	30.0%
TGTTATGAAGAACTGAAAAG+TGG	+	chr3_4:55313129-55313148	Msa0507680:CDS	30.0%
ACTGTCCTAAGAAAAGAAAA+CGG	+	chr3_4:55313196-55313215	Msa0507680:CDS	30.0%
TTAACTATAACTCCAATCCA+AGG	-	chr3_4:55313438-55313457	None:intergenic	30.0%
TTTATAGAATTCTACAAGGG+CGG	-	chr3_4:55313595-55313614	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	55311694	55319566	55311694	ID=Msa0507680;Name=Msa0507680
chr3_4	mRNA	55311694	55319566	55311694	ID=Msa0507680-mRNA-1;Parent=Msa0507680;Name=Msa0507680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=240\|1\|1\|1\|0.71\|0.5\|8\|372\|640
chr3_4	exon	55311694	55311906	55311694	ID=Msa0507680-mRNA-1:exon:12277;Parent=Msa0507680-mRNA-1
chr3_4	exon	55313036	55313984	55313036	ID=Msa0507680-mRNA-1:exon:12278;Parent=Msa0507680-mRNA-1
chr3_4	exon	55314413	55314594	55314413	ID=Msa0507680-mRNA-1:exon:12279;Parent=Msa0507680-mRNA-1
chr3_4	exon	55315559	55315648	55315559	ID=Msa0507680-mRNA-1:exon:12280;Parent=Msa0507680-mRNA-1
chr3_4	exon	55315750	55316037	55315750	ID=Msa0507680-mRNA-1:exon:12281;Parent=Msa0507680-mRNA-1
chr3_4	exon	55316515	55316724	55316515	ID=Msa0507680-mRNA-1:exon:12282;Parent=Msa0507680-mRNA-1
chr3_4	exon	55317941	55318173	55317941	ID=Msa0507680-mRNA-1:exon:12283;Parent=Msa0507680-mRNA-1
chr3_4	exon	55319197	55319566	55319197	ID=Msa0507680-mRNA-1:exon:12284;Parent=Msa0507680-mRNA-1
chr3_4	five_prime_UTR	55311694	55311906	55311694	ID=Msa0507680-mRNA-1:five_prime_utr;Parent=Msa0507680-mRNA-1
chr3_4	five_prime_UTR	55313036	55313062	55313036	ID=Msa0507680-mRNA-1:five_prime_utr;Parent=Msa0507680-mRNA-1
chr3_4	CDS	55313063	55313984	55313063	ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4	CDS	55314413	55314594	55314413	ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4	CDS	55315559	55315648	55315559	ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4	CDS	55315750	55316037	55315750	ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4	CDS	55316515	55316724	55316515	ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4	CDS	55317941	55318171	55317941	ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4	three_prime_UTR	55318172	55318173	55318172	ID=Msa0507680-mRNA-1:three_prime_utr;Parent=Msa0507680-mRNA-1
chr3_4	three_prime_UTR	55319197	55319566	55319197	ID=Msa0507680-mRNA-1:three_prime_utr;Parent=Msa0507680-mRNA-1

Gene Sequence

>Msa0507680

ATGTCTCAGAGCTCTGAGGAGGATACTGATATAAGTGATTCTGAGATAAGTGAGTATGAGGAAAAATGTTATGAAGAACTGAAAAGTGGAAGTCAGAATGTGAAAACCTCGGATGAGAAGTTCACTTGTCCATACTGTCCTAAGAAAAGAAAACGGGATTATTTGTACAACGAACTCCTGCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCACAGAAGAGAAAGCCAAGAGAAAAGGCTACTCATTTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATGAATATAGATACTCCATCGGAACCAACTGATAACGGTGCTGATAACGGTGACACAGACACTTCTATTGATTCTGATGAGCAGTTTGTTTGGCCTTGGATTGGAGTTATAGTTAATATTCCCACTAGCAGGGCACAAGATGGGCGTGCTGTTGGGGCTAGTGGTTCCAAGCTTAGGGATGAGTATAGACGCAGGGGTTTCAATCCATATCGAGTCAATCCTCTGTGGAATTTCCGAGGTCACTCTGGTACCGCCCTTGTAGAATTCTATAAAGACTGGCCCGGCTTAGATAATGCACTTGCATTTGAAAAAGCATATGCATCAGACCATCACGGGAAAAAGGATTGGTTTGTTAATACAGAGCCGAAGTCGGGTCTTTATGCATGGGTTGCCCGAGCTGATGACTACAAAAAGAACAATATCATTGGTGAATATCTGCGAAAGATGGGCGATATCAAAACCATACCTGAACTTCAGGAAGAACAAGCTCGAAAGCAGGATAAACTCGTGTCCAATTTGACCAACATTATTGAGGTCAAAAACAAGCACTTAATTGAGATAGAAGCAAGATGCACTGAGACTACAGCCAAAATGAATTCTGCTATGACAGAAAAAGATCAGCTCATTCAAGCTTATAATGAAGAGATAAAGAAAATACAGTCAAGTGCTAAGGATCACTTCCAAAGGATTTTTAATGATCACGAAAAGCTTAAGTCGCAACTGGAAACTCAGAAAAGTGAGCTTGAGTCGCGGAGAATCACATTGGAAAAGCGTGAAGCACATAATGAAAGTGAAAGAAGAAAGTTGCTAGAAGAGATGGAGGAGAATGCAACGAGAAATAGCTCTCTTCAGATGGCTTCTCTGGAGCAACAGAAAGCAGATATAAATGTTATGAAACTGGCTGAAGATCAGAAGAAACAAAAAGAACAGCTCCATGCTAAAATCATTCAGCTTGAAAGACAACTGGATATGAAACAAAAGCTGGAACTGGAGATTCAGCAACTAAAAGGATCACTAAGTGTGTTGAAGCACATAGAAGATGACGAAGATGTAGAAGTTTTGAAGAAGGTAGATGATTTGCATATGGGTTTGAGGGAGAAGGAACAGTCTCTTCAAGACTTAGATGCACTGAACCAAACACTAATCATCAAGGAGCGTAAGAGTAACGATGAACTGCAGGATGCTCGAAAAGAATTGATTAATGGCATTAAAGATATAGGTACTCGAGTCCATATTGGTGTGAAGAGAATGGGGGAACTTGACACTGGACCGTTCCTTGAAGCTATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGACAAAGCTTCAGAACTATGTTCATTGTGGGAAGAGTATCTAAAAGACCCAGATTGGCATCCATTCAAAGTTGTCATGATTGAAGGGAAAGAAAAGGAAATTATTAAAGATGACGATGAAAAGCTGAATGGACTGAGAAAAGAAGTGGGTGAAAAGGCATATAGTGCCGTGGTGGCATCTTTAACGGAGATTAATGAATATAATCCTAGTGGGAGATATGTAACCTCAGAGTTATGGAACTATAAAGCGGGAAGGAGAGCAACTTTGCAAGAAGGAGTGAAGTTTTTGTTGGACTGCTGGAAACGCAAGAAGAAAGGAATGTTGTGA

Protein sequence

>Msa0507680

MSQSSEEDTDISDSEISEYEEKCYEELKSGSQNVKTSDEKFTCPYCPKKRKRDYLYNELLQHASGVGQSSSQKRKPREKATHLALVKYLEKDLMNIDTPSEPTDNGADNGDTDTSIDSDEQFVWPWIGVIVNIPTSRAQDGRAVGASGSKLRDEYRRRGFNPYRVNPLWNFRGHSGTALVEFYKDWPGLDNALAFEKAYASDHHGKKDWFVNTEPKSGLYAWVARADDYKKNNIIGEYLRKMGDIKTIPELQEEQARKQDKLVSNLTNIIEVKNKHLIEIEARCTETTAKMNSAMTEKDQLIQAYNEEIKKIQSSAKDHFQRIFNDHEKLKSQLETQKSELESRRITLEKREAHNESERRKLLEEMEENATRNSSLQMASLEQQKADINVMKLAEDQKKQKEQLHAKIIQLERQLDMKQKLELEIQQLKGSLSVLKHIEDDEDVEVLKKVDDLHMGLREKEQSLQDLDALNQTLIIKERKSNDELQDARKELINGIKDIGTRVHIGVKRMGELDTGPFLEAMKKRYNEEEAEDKASELCSLWEEYLKDPDWHPFKVVMIEGKEKEIIKDDDEKLNGLRKEVGEKAYSAVVASLTEINEYNPSGRYVTSELWNYKAGRRATLQEGVKFLLDCWKRKKKGML*