AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0507680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507680 MtrunA17_Chr3g0111661 97.969 640 13 0 1 640 1 640 0.0 1290
Msa0507680 MtrunA17_Chr5g0435301 64.319 653 214 6 5 640 472 1122 0.0 832
Msa0507680 MtrunA17_Chr5g0435301 57.407 108 45 1 4 110 231 338 1.59e-30 128
Msa0507680 MtrunA17_Chr5g0435301 50.000 138 52 4 1 127 117 248 1.60e-29 125
Msa0507680 MtrunA17_Chr5g0435301 52.542 118 53 2 2 116 350 467 3.03e-29 124
Msa0507680 MtrunA17_Chr5g0435301 55.963 109 46 2 1 108 1 108 3.76e-28 120
Msa0507680 MtrunA17_Chr4g0001231 42.926 622 328 10 22 637 22 622 7.50e-162 478
Msa0507680 MtrunA17_Chr4g0074301 42.173 626 337 8 19 637 19 626 3.19e-160 474
Msa0507680 MtrunA17_Chr4g0070931 42.357 628 333 9 19 637 19 626 2.65e-158 469
Msa0507680 MtrunA17_Chr2g0328251 37.861 692 350 14 13 636 10 689 4.29e-135 411
Msa0507680 MtrunA17_Chr2g0328241 39.510 653 333 11 34 636 33 673 7.90e-129 395
Msa0507680 MtrunA17_Chr4g0024031 34.925 670 332 13 34 636 33 665 6.96e-113 353
Msa0507680 MtrunA17_Chr2g0327251 38.645 546 265 8 110 636 69 563 1.34e-104 328
Msa0507680 MtrunA17_Chr3g0111741 58.879 214 87 1 425 637 123 336 2.64e-72 237
Msa0507680 MtrunA17_Chr4g0071151 50.579 259 97 4 398 637 3 249 3.97e-71 230
Msa0507680 MtrunA17_Chr2g0328231 38.220 382 172 7 282 632 9 357 4.35e-63 213
Msa0507680 MtrunA17_Chr3g0111731 54.464 224 87 3 417 637 1 212 2.89e-62 206
Msa0507680 MtrunA17_Chr4g0074271 34.646 381 214 5 19 398 36 382 3.20e-59 205
Msa0507680 MtrunA17_Chr4g0074271 48.529 68 35 0 563 630 381 448 2.96e-14 75.5
Msa0507680 MtrunA17_Chr3g0111691 55.556 72 32 0 566 637 17 88 7.24e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507680 AT3G48670.2 55.732 628 272 3 16 639 21 646 0.0 704
Msa0507680 AT3G48670.1 55.732 628 272 3 16 639 21 646 0.0 704
Msa0507680 AT3G48670.3 55.732 628 272 3 16 639 21 646 0.0 704
Msa0507680 AT3G12550.5 50.786 636 297 7 13 636 2 633 0.0 624
Msa0507680 AT3G12550.4 50.706 637 297 7 13 636 2 634 0.0 624
Msa0507680 AT3G12550.2 50.706 637 297 7 13 636 2 634 0.0 624
Msa0507680 AT3G12550.1 50.706 637 297 7 13 636 2 634 0.0 624
Msa0507680 AT3G12550.3 49.647 566 270 6 13 567 2 563 0.0 542
Msa0507680 AT1G15910.1 39.641 613 361 7 18 628 17 622 8.93e-144 432
Msa0507680 AT4G00380.1 40.033 612 359 6 19 628 18 623 8.46e-143 429
Msa0507680 AT4G00380.3 40.033 612 359 6 19 628 18 623 8.46e-143 429
Msa0507680 AT1G13790.2 41.822 538 294 5 99 632 204 726 1.35e-136 417
Msa0507680 AT1G13790.2 46.341 82 43 1 12 93 3 83 1.13e-14 78.2
Msa0507680 AT1G13790.1 41.822 538 294 5 99 632 204 726 1.35e-136 417
Msa0507680 AT1G13790.1 46.341 82 43 1 12 93 3 83 1.13e-14 78.2
Msa0507680 AT4G00380.2 37.908 612 344 6 19 628 18 595 4.21e-132 401
Msa0507680 AT1G80790.1 39.739 614 356 11 19 628 19 622 3.24e-130 397
Msa0507680 AT1G80790.2 39.739 614 356 11 19 628 19 622 3.24e-130 397
Msa0507680 AT5G59390.2 38.686 548 319 6 89 629 1 538 2.46e-126 384
Msa0507680 AT5G59390.4 38.686 548 319 6 89 629 1 538 2.46e-126 384
Msa0507680 AT5G59390.3 38.686 548 319 6 89 629 1 538 2.46e-126 384
Msa0507680 AT5G59390.1 38.336 553 319 7 89 629 1 543 9.89e-124 378
Msa0507680 AT5G59390.5 38.336 553 319 7 89 629 1 543 9.89e-124 378
Msa0507680 AT4G01780.1 41.860 516 172 7 128 639 80 471 2.51e-120 366
Msa0507680 AT4G01180.1 37.338 541 300 8 108 629 18 538 1.43e-113 352
Msa0507680 AT1G80790.3 37.037 459 277 9 19 475 19 467 1.21e-83 271
Msa0507680 AT3G29375.3 40.704 199 109 3 442 636 33 226 1.99e-37 139
Msa0507680 AT3G29375.1 41.206 199 108 3 442 636 156 349 4.80e-36 139
Msa0507680 AT3G29375.2 39.316 117 65 2 442 557 33 144 1.09e-15 75.9

Find 159 sgRNAs with CRISPR-Local

Find 512 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGCTTTAGTGAAATATT+TGG 0.147850 3_4:+55313308 Msa0507680:CDS
CTCAATAATGTTGGTCAAAT+TGG 0.163099 3_4:-55313853 None:intergenic
GATGAGGTTCTCAAAATATT+AGG 0.182802 3_4:-55311788 None:intergenic
CACAAGATGGGCGTGCTGTT+GGG 0.229647 3_4:+55313475 Msa0507680:CDS
GAACTCCTGCAACATGCTTC+TGG 0.241965 3_4:+55313234 Msa0507680:CDS
GGGCTAGTGGTTCCAAGCTT+AGG 0.267461 3_4:+55313496 Msa0507680:CDS
TGTCATAGCAGAATTCATTT+TGG 0.267704 3_4:-55313928 None:intergenic
CACAGAGGATTGACTCGATA+TGG 0.273116 3_4:-55313546 None:intergenic
GGTTTGCAGCTCTACAAATA+TGG 0.283988 3_4:-55319258 None:intergenic
CTCTCTTCAGATGGCTTCTC+TGG 0.291092 3_4:+55315576 Msa0507680:CDS
ACTTTGAATGGATGCCAATC+TGG 0.306475 3_4:-55316677 None:intergenic
AATTGGAAGTAGAAGGAAAA+TGG 0.320820 3_4:-55311876 None:intergenic
CCATTCTCTTCACACCAATA+TGG 0.337100 3_4:-55316541 None:intergenic
ATGAGGTTCTCAAAATATTA+GGG 0.340733 3_4:-55311787 None:intergenic
ATCAGACCATCACGGGAAAA+AGG 0.341544 3_4:+55313662 Msa0507680:CDS
CTGGAGATTCAGCAACTAAA+AGG 0.346899 3_4:+55315822 Msa0507680:CDS
ATGAGCAGTTTGTTTGGCCT+TGG 0.350970 3_4:+55313418 Msa0507680:CDS
TTGTATTTCAGGTGGTATAA+AGG 0.352840 3_4:+55313025 Msa0507680:intron
AACTCCTGCAACATGCTTCT+GGG 0.355105 3_4:+55313235 Msa0507680:CDS
AATTTATGATCATGTTAAAC+TGG 0.362350 3_4:+55319309 Msa0507680:three_prime_UTR
GCTTGTTCTTCCTGAAGTTC+AGG 0.365310 3_4:-55313807 None:intergenic
CAAAACCATACCTGAACTTC+AGG 0.366653 3_4:+55313797 Msa0507680:CDS
GCACAAGATGGGCGTGCTGT+TGG 0.374639 3_4:+55313474 Msa0507680:CDS
GAAGGTAGATGATTTGCATA+TGG 0.376492 3_4:+55315899 Msa0507680:CDS
AGATATAAATGTTATGAAAC+TGG 0.377193 3_4:+55315612 Msa0507680:CDS
GGCTAGTGGTTCCAAGCTTA+GGG 0.377913 3_4:+55313497 Msa0507680:CDS
AAGAGAAAAGGCTACTCATT+TGG 0.397330 3_4:+55313290 Msa0507680:CDS
CCACCCCAGAAGCATGTTGC+AGG 0.399060 3_4:-55313239 None:intergenic
TGATTTGCATATGGGTTTGA+GGG 0.400254 3_4:+55315908 Msa0507680:CDS
GCTCCTTGATGATTAGTGTT+TGG 0.402887 3_4:-55315968 None:intergenic
ATTCTGATGAGCAGTTTGTT+TGG 0.414097 3_4:+55313412 Msa0507680:CDS
GCTCTCTAAGAAGAGAGTTT+AGG 0.420490 3_4:-55311826 None:intergenic
TTCAAAGTTGTCATGATTGA+AGG 0.425294 3_4:+55316692 Msa0507680:CDS
TGCCGTGGTGGCATCTTTAA+CGG 0.426193 3_4:+55318009 Msa0507680:CDS
ATGATTTGCATATGGGTTTG+AGG 0.426345 3_4:+55315907 Msa0507680:CDS
TTGTAGGGCATTAAAGATAT+AGG 0.427673 3_4:+55316509 Msa0507680:intron
TCAATCATGACAACTTTGAA+TGG 0.430213 3_4:-55316689 None:intergenic
TAGTTAATATTCCCACTAGC+AGG 0.431817 3_4:+55313451 Msa0507680:CDS
GAAGAGAAAGCCAAGAGAAA+AGG 0.432830 3_4:+55313278 Msa0507680:CDS
CATTCAGCTTGAAAGACAAC+TGG 0.434076 3_4:+55315779 Msa0507680:CDS
ACAAGATGGGCGTGCTGTTG+GGG 0.435201 3_4:+55313476 Msa0507680:CDS
CGAAAAGCTTAAGTCGCAAC+TGG 0.436034 3_4:+55314471 Msa0507680:CDS
CAGTTTGTTTGGCCTTGGAT+TGG 0.436617 3_4:+55313423 Msa0507680:CDS
TTTAGTGAAATATTTGGAAA+AGG 0.437782 3_4:+55313314 Msa0507680:CDS
CTCTCTTCTTAGAGAGCGTT+AGG 0.440038 3_4:+55311832 Msa0507680:five_prime_UTR
TTATGCACAACCTTAATCTT+CGG 0.440589 3_4:-55319279 None:intergenic
TATGAAACAAAAGCTGGAAC+TGG 0.443041 3_4:+55315803 Msa0507680:CDS
CATATTGGTGTGAAGAGAAT+GGG 0.444902 3_4:+55316542 Msa0507680:CDS
AAGAAAGTTGCTAGAAGAGA+TGG 0.445164 3_4:+55314567 Msa0507680:CDS
GATATGTAACCTCAGAGTTA+TGG 0.447168 3_4:+55318059 Msa0507680:CDS
CATTCCCCTAGTGTTGTTTG+TGG 0.454225 3_4:+55311682 None:intergenic
GAGCTGCAAACCGAAGATTA+AGG 0.454519 3_4:+55319269 Msa0507680:three_prime_UTR
AAGGTAGATGATTTGCATAT+GGG 0.455418 3_4:+55315900 Msa0507680:CDS
CTGCAACATGCTTCTGGGGT+GGG 0.458226 3_4:+55313240 Msa0507680:CDS
TTCTTCCTGAAGTTCAGGTA+TGG 0.459017 3_4:-55313802 None:intergenic
CCCATCTTGTGCCCTGCTAG+TGG 0.460385 3_4:-55313463 None:intergenic
AATAATTTGTGCATGGCGGC+TGG 0.461442 3_4:+55319224 Msa0507680:three_prime_UTR
TTCAGAACTATGTTCATTGT+GGG 0.462202 3_4:+55316637 Msa0507680:CDS
CCATATTGGTGTGAAGAGAA+TGG 0.462918 3_4:+55316541 Msa0507680:CDS
TGGTGAATATCTGCGAAAGA+TGG 0.472008 3_4:+55313767 Msa0507680:CDS
CAATTTGACCAACATTATTG+AGG 0.472553 3_4:+55313854 Msa0507680:CDS
AAGTAGAAGGAAAATGGATC+TGG 0.472707 3_4:-55311870 None:intergenic
GGGCGTGCTGTTGGGGCTAG+TGG 0.472779 3_4:+55313483 Msa0507680:CDS
CCTTTGTATTATCTCTAGCA+TGG 0.473959 3_4:+55319388 Msa0507680:three_prime_UTR
TGCAAGTGCATTATCTAAGC+CGG 0.475800 3_4:-55313622 None:intergenic
CGAAGTCGGGTCTTTATGCA+TGG 0.478600 3_4:+55313706 Msa0507680:CDS
CTCATTCAAGCTTATAATGA+AGG 0.478873 3_4:+55313963 Msa0507680:CDS
AGTATCTAAAAGACCCAGAT+TGG 0.483392 3_4:+55316663 Msa0507680:CDS
GTTAATACAGAGCCGAAGTC+GGG 0.485220 3_4:+55313693 Msa0507680:CDS
GTTGCTAGAAGAGATGGAGG+AGG 0.492303 3_4:+55314573 Msa0507680:CDS
CTGTCCTAAGAAAAGAAAAC+GGG 0.493609 3_4:+55313197 Msa0507680:CDS
CCTGCAACATGCTTCTGGGG+TGG 0.494090 3_4:+55313239 Msa0507680:CDS
AAAGTTGCTAGAAGAGATGG+AGG 0.496394 3_4:+55314570 Msa0507680:CDS
ACTGTCCTAAGAAAAGAAAA+CGG 0.497895 3_4:+55313196 Msa0507680:CDS
CCGTTATCAGTTGGTTCCGA+TGG 0.498274 3_4:-55313357 None:intergenic
TGTTATGAAGAACTGAAAAG+TGG 0.504332 3_4:+55313129 Msa0507680:CDS
CTTCAGAACTATGTTCATTG+TGG 0.507293 3_4:+55316636 Msa0507680:CDS
CTTTGAATGGATGCCAATCT+GGG 0.508070 3_4:-55316676 None:intergenic
GAGAAAAGAAGTGGGTGAAA+AGG 0.509744 3_4:+55317979 Msa0507680:CDS
TTCTGAGATAAGTGAGTATG+AGG 0.511412 3_4:+55313101 Msa0507680:CDS
TTCTTCATAGCTTCAAGGAA+CGG 0.513496 3_4:-55316581 None:intergenic
CATGATTGAAGGGAAAGAAA+AGG 0.514995 3_4:+55316703 Msa0507680:CDS
TGCTGGAAACGCAAGAAGAA+AGG 0.516899 3_4:+55318139 Msa0507680:CDS
TCTATACTCATCCCTAAGCT+TGG 0.519914 3_4:-55313508 None:intergenic
TGGAATTTCCGAGGTCACTC+TGG 0.520278 3_4:+55313567 Msa0507680:CDS
GCATATGGGTTTGAGGGAGA+AGG 0.522543 3_4:+55315914 Msa0507680:CDS
CCATCGGAACCAACTGATAA+CGG 0.523052 3_4:+55313357 Msa0507680:CDS
ACTGATAACGGTGCTGATAA+CGG 0.523153 3_4:+55313369 Msa0507680:CDS
TATGAAGAAAAGATATAATG+AGG 0.526790 3_4:+55316595 Msa0507680:CDS
CCATGCACAAATTATTCTCT+CGG 0.526826 3_4:-55319217 None:intergenic
CCACTAGCAGGGCACAAGAT+GGG 0.531363 3_4:+55313463 Msa0507680:CDS
GGTGAATATCTGCGAAAGAT+GGG 0.536287 3_4:+55313768 Msa0507680:CDS
CCATCTTGTGCCCTGCTAGT+GGG 0.536337 3_4:-55313462 None:intergenic
ATAGGTACTCGAGTCCATAT+TGG 0.536518 3_4:+55316527 Msa0507680:CDS
ATTAATGAATATAATCCTAG+TGG 0.537739 3_4:+55318034 Msa0507680:CDS
CATATGCATCAGACCATCAC+GGG 0.537748 3_4:+55313655 Msa0507680:CDS
TCAAAGTTGTCATGATTGAA+GGG 0.539832 3_4:+55316693 Msa0507680:CDS
CCCACTAGCAGGGCACAAGA+TGG 0.540992 3_4:+55313462 Msa0507680:CDS
GAGAAATAGCTCTCTTCAGA+TGG 0.542142 3_4:+55315567 Msa0507680:CDS
GAAAATACAGTCAAGTGCTA+AGG 0.543949 3_4:+55314420 Msa0507680:CDS
TTGTAGAATTCTATAAAGAC+TGG 0.550308 3_4:+55313598 Msa0507680:CDS
TGTTAATACAGAGCCGAAGT+CGG 0.559361 3_4:+55313692 Msa0507680:CDS
GCAAGTGCATTATCTAAGCC+GGG 0.559583 3_4:-55313621 None:intergenic
TAAGAGTAACGATGAACTGC+AGG 0.562042 3_4:+55315992 Msa0507680:CDS
ACTGGATATGAAACAAAAGC+TGG 0.563267 3_4:+55315797 Msa0507680:CDS
TTTCAGGTGGTATAAAGGCT+AGG 0.564453 3_4:+55313030 Msa0507680:intron
TACAAAAGCAGTTTGAGTCT+CGG 0.566152 3_4:-55319358 None:intergenic
GAAACTGGCTGAAGATCAGA+AGG 0.567201 3_4:+55315627 Msa0507680:CDS
GAACCAAACACTAATCATCA+AGG 0.567695 3_4:+55315965 Msa0507680:CDS
GGAAGAACAAGCTCGAAAGC+AGG 0.567972 3_4:+55313818 Msa0507680:CDS
AGGAGAGCAACTTTGCAAGA+AGG 0.568496 3_4:+55318097 Msa0507680:CDS
AAATATTAGGGATTTGACAA+TGG 0.572482 3_4:-55311775 None:intergenic
AGTTAATATTCCCACTAGCA+GGG 0.577595 3_4:+55313452 Msa0507680:CDS
GAATTCTATAAAGACTGGCC+CGG 0.577874 3_4:+55313603 Msa0507680:CDS
GAAGTCGGGTCTTTATGCAT+GGG 0.578902 3_4:+55313707 Msa0507680:CDS
GATGACGATGAAAAGCTGAA+TGG 0.580152 3_4:+55317953 Msa0507680:CDS
CTTTGTATTATCTCTAGCAT+GGG 0.580952 3_4:+55319389 Msa0507680:three_prime_UTR
TTATCAGCACCGTTATCAGT+TGG 0.584851 3_4:-55313366 None:intergenic
CCGAGAGAATAATTTGTGCA+TGG 0.590689 3_4:+55319217 Msa0507680:three_prime_UTR
GAGTTATGGAACTATAAAGC+GGG 0.593653 3_4:+55318073 Msa0507680:CDS
GAAGAAAAGATATAATGAGG+AGG 0.605682 3_4:+55316598 Msa0507680:CDS
TTAACTATAACTCCAATCCA+AGG 0.605894 3_4:-55313435 None:intergenic
AGAAGAAAGGAATGTTGTGA+AGG 0.608106 3_4:+55318152 Msa0507680:CDS
TAGGGATGAGTATAGACGCA+GGG 0.612645 3_4:+55313515 Msa0507680:CDS
TTTATAGTTCCATAACTCTG+AGG 0.618749 3_4:-55318068 None:intergenic
AGTCTTTATAGAATTCTACA+AGG 0.623481 3_4:-55313596 None:intergenic
GGGCGGTACCAGAGTGACCT+CGG 0.624880 3_4:-55313575 None:intergenic
TTAATGAATATAATCCTAGT+GGG 0.627933 3_4:+55318035 Msa0507680:CDS
TTTATAGAATTCTACAAGGG+CGG 0.629108 3_4:-55313592 None:intergenic
ACTCCTGCAACATGCTTCTG+GGG 0.631536 3_4:+55313236 Msa0507680:CDS
TATGAATATAGATACTCCAT+CGG 0.631604 3_4:+55313341 Msa0507680:CDS
GAGGTTACATATCTCCCACT+AGG 0.640674 3_4:-55318049 None:intergenic
TATGGAACTATAAAGCGGGA+AGG 0.642700 3_4:+55318077 Msa0507680:CDS
GTGCTAAGGATCACTTCCAA+AGG 0.644535 3_4:+55314434 Msa0507680:CDS
CATGCATAAAGACCCGACTT+CGG 0.645714 3_4:-55313705 None:intergenic
GCATATGCATCAGACCATCA+CGG 0.645968 3_4:+55313654 Msa0507680:CDS
ATATTGGTGTGAAGAGAATG+GGG 0.648291 3_4:+55316543 Msa0507680:CDS
TGAGTCGCGGAGAATCACAT+TGG 0.648552 3_4:+55314513 Msa0507680:CDS
CTCCGTTAAAGATGCCACCA+CGG 0.652925 3_4:-55318011 None:intergenic
AATCCTCTGTGGAATTTCCG+AGG 0.653346 3_4:+55313558 Msa0507680:CDS
GAATGGACTGAGAAAAGAAG+TGG 0.656264 3_4:+55317970 Msa0507680:CDS
AATGTCTCAGAGCTCTGAGG+AGG 0.657434 3_4:+55313062 Msa0507680:exon
AGAGTTATGGAACTATAAAG+CGG 0.659050 3_4:+55318072 Msa0507680:CDS
ACAAGTGAACTTCTCATCCG+AGG 0.660081 3_4:-55313169 None:intergenic
TTAGGGATGAGTATAGACGC+AGG 0.666699 3_4:+55313514 Msa0507680:CDS
AAGTCAGAATGTGAAAACCT+CGG 0.672200 3_4:+55313152 Msa0507680:CDS
AGTAGTCACACACACTCACA+CGG 0.674976 3_4:+55311713 Msa0507680:five_prime_UTR
GTCTTTATAGAATTCTACAA+GGG 0.676413 3_4:-55313595 None:intergenic
AGGGATGAGTATAGACGCAG+GGG 0.684798 3_4:+55313516 Msa0507680:CDS
AGAAAAGTGAGCTTGAGTCG+CGG 0.686345 3_4:+55314500 Msa0507680:CDS
TACAATGTCTCAGAGCTCTG+AGG 0.691431 3_4:+55313059 Msa0507680:exon
CATATCGAGTCAATCCTCTG+TGG 0.700317 3_4:+55313547 Msa0507680:CDS
AAAGGCATATAGTGCCGTGG+TGG 0.703811 3_4:+55317997 Msa0507680:CDS
CCATGCTAGAGATAATACAA+AGG 0.708587 3_4:-55319388 None:intergenic
AATGGACTGAGAAAAGAAGT+GGG 0.713485 3_4:+55317971 Msa0507680:CDS
AGAGAATAATTTGTGCATGG+CGG 0.721545 3_4:+55319220 Msa0507680:three_prime_UTR
TGAAAAGGCATATAGTGCCG+TGG 0.725018 3_4:+55317994 Msa0507680:CDS
TATTGGTGTGAAGAGAATGG+GGG 0.746922 3_4:+55316544 Msa0507680:CDS
TGACCTCGGAAATTCCACAG+AGG 0.808295 3_4:-55313561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATTTCATTTTTATTTTT+AGG + chr3_4:55312075-55312094 Msa0507680:intron 10.0%
!!! TTTTTATTTTTATTTTTACG+AGG + chr3_4:55312198-55312217 Msa0507680:intron 10.0%
!!! TTTTTACATTACTTTTATAA+TGG + chr3_4:55316385-55316404 Msa0507680:intron 10.0%
!! TATATATATATATATTCACA+TGG - chr3_4:55317442-55317461 None:intergenic 10.0%
!!! AGTGAAATTAATTGATTTTT+GGG + chr3_4:55312032-55312051 Msa0507680:intron 15.0%
!! ATTGTTAAATTGAATTTAGA+TGG + chr3_4:55312381-55312400 Msa0507680:intron 15.0%
!!! GTTTTTTTGTTTTAACATAT+TGG + chr3_4:55314675-55314694 Msa0507680:intron 15.0%
!!! TTGATGTATTTACTTTAAAA+TGG + chr3_4:55314985-55315004 Msa0507680:intron 15.0%
!! TTTAAATATCAAATAGTAAG+TGG - chr3_4:55315397-55315416 None:intergenic 15.0%
!!! TCTTAAGAAATATTTTTCTT+GGG - chr3_4:55315425-55315444 None:intergenic 15.0%
!!! TTCTTAAGAAATATTTTTCT+TGG - chr3_4:55315426-55315445 None:intergenic 15.0%
!! TAATTCAAGTATGAAAAAAT+TGG - chr3_4:55316093-55316112 None:intergenic 15.0%
!!! TTTTTCATACTTGAATTATT+TGG + chr3_4:55316095-55316114 Msa0507680:intron 15.0%
!! CATCAACAAAAAAAAATATT+AGG - chr3_4:55316129-55316148 None:intergenic 15.0%
!! CAGTAAAATGTATAAAAAAA+AGG - chr3_4:55316446-55316465 None:intergenic 15.0%
!!! TTATCACTTTTAATCAATTT+TGG + chr3_4:55316783-55316802 Msa0507680:intron 15.0%
!!! TATCTATTTTATCTGTATAA+TGG + chr3_4:55317826-55317845 Msa0507680:intron 15.0%
!! CTAAAAAAAAAAAAATCAGA+AGG - chr3_4:55318671-55318690 None:intergenic 15.0%
!! AAAAATAAGAAAATATGAGA+TGG - chr3_4:55318990-55319009 None:intergenic 15.0%
!! AATTATGACCTAAGAAAAAT+TGG - chr3_4:55311896-55311915 None:intergenic 20.0%
!! CATAATTTCATAACTCAATT+CGG + chr3_4:55311909-55311928 Msa0507680:intron 20.0%
!!! CAAATTTTTCACTGTTTATT+CGG + chr3_4:55311992-55312011 Msa0507680:intron 20.0%
!!! CAGTGAAATTAATTGATTTT+TGG + chr3_4:55312031-55312050 Msa0507680:intron 20.0%
!!! TTTGATAATTGTTTGATTAG+TGG + chr3_4:55312151-55312170 Msa0507680:intron 20.0%
!!! TTGATAATTGTTTGATTAGT+GGG + chr3_4:55312152-55312171 Msa0507680:intron 20.0%
!! AAAATAAAAAGTTGAAACAC+TGG - chr3_4:55312188-55312207 None:intergenic 20.0%
!!! TTATTAATCTGAAGTTTGAA+GGG + chr3_4:55312329-55312348 Msa0507680:intron 20.0%
!!! TTGAATTTAGATGGTTTTTT+AGG + chr3_4:55312390-55312409 Msa0507680:intron 20.0%
!!! TGGTTTTTTAGGTTATTTTA+AGG + chr3_4:55312401-55312420 Msa0507680:intron 20.0%
!!! TCCTTTTTATAAGAAACAAA+TGG + chr3_4:55312670-55312689 Msa0507680:intron 20.0%
!!! CCTTTTTATAAGAAACAAAT+GGG + chr3_4:55312671-55312690 Msa0507680:intron 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + chr3_4:55312694-55312713 Msa0507680:intron 20.0%
!!! GCTGTTTTTATAAACTATAT+TGG + chr3_4:55312837-55312856 Msa0507680:intron 20.0%
!! TTTAGTGAAATATTTGGAAA+AGG + chr3_4:55313314-55313333 Msa0507680:CDS 20.0%
!! TACAAAAAGAACAATATCAT+TGG + chr3_4:55313747-55313766 Msa0507680:CDS 20.0%
!! AAATTATTGAAAAGTAACTC+GGG - chr3_4:55314006-55314025 None:intergenic 20.0%
!! CAAATTATTGAAAAGTAACT+CGG - chr3_4:55314007-55314026 None:intergenic 20.0%
!! ATTCTGAATTTGACAATTAA+GGG + chr3_4:55314186-55314205 Msa0507680:intron 20.0%
!! TTTCTTTATCTCTAAATACA+AGG - chr3_4:55314404-55314423 None:intergenic 20.0%
!!! CATATTGGTTGTTATTAATA+TGG + chr3_4:55314690-55314709 Msa0507680:intron 20.0%
!! CAACAATTACTGTTAAATAT+TGG - chr3_4:55315150-55315169 None:intergenic 20.0%
!! CAATATTTAACAGTAATTGT+TGG + chr3_4:55315148-55315167 Msa0507680:intron 20.0%
!!! GCTTTTAATGATATGAAATT+CGG + chr3_4:55315214-55315233 Msa0507680:intron 20.0%
!!! CTTTTAATGATATGAAATTC+GGG + chr3_4:55315215-55315234 Msa0507680:intron 20.0%
!! AGATATAAATGTTATGAAAC+TGG + chr3_4:55315612-55315631 Msa0507680:CDS 20.0%
!! AGTATGAAAAAATTGGAAAA+TGG - chr3_4:55316086-55316105 None:intergenic 20.0%
!! TATGAAGAAAAGATATAATG+AGG + chr3_4:55316595-55316614 Msa0507680:CDS 20.0%
!! AAAGTTAAAAATACAGTTAC+TGG - chr3_4:55317029-55317048 None:intergenic 20.0%
!!! AGTAACTGTATTTTTAACTT+TGG + chr3_4:55317028-55317047 Msa0507680:intron 20.0%
!! TTAATCTGATCATTATCAAA+GGG - chr3_4:55317520-55317539 None:intergenic 20.0%
!! ATTAATCTGATCATTATCAA+AGG - chr3_4:55317521-55317540 None:intergenic 20.0%
!! ATAAAGAGCAATTAACTATA+AGG - chr3_4:55317636-55317655 None:intergenic 20.0%
!! ATTAATGAATATAATCCTAG+TGG + chr3_4:55318034-55318053 Msa0507680:CDS 20.0%
!! TTAATGAATATAATCCTAGT+GGG + chr3_4:55318035-55318054 Msa0507680:CDS 20.0%
!! TTCTAGTAAAAGTAATCATA+TGG - chr3_4:55318344-55318363 None:intergenic 20.0%
!!! ATGATTACTTTTACTAGAAA+AGG + chr3_4:55318345-55318364 Msa0507680:intron 20.0%
!!! TGATTACTTTTACTAGAAAA+GGG + chr3_4:55318346-55318365 Msa0507680:intron 20.0%
!!! TTTTTGATATTGATAGAAAC+TGG - chr3_4:55318434-55318453 None:intergenic 20.0%
!!! AAAATTATCCTTTTTGGTTA+AGG - chr3_4:55318866-55318885 None:intergenic 20.0%
!!! CTGAAAAAAATTATCCTTTT+TGG - chr3_4:55318872-55318891 None:intergenic 20.0%
!!! AATTTTTTTCAGAAACATTG+TGG + chr3_4:55318880-55318899 Msa0507680:intron 20.0%
!!! TTAATTTTTGGCATAACTTT+TGG + chr3_4:55319041-55319060 Msa0507680:intron 20.0%
!!! TTTTGGAGATTTCTAATTTT+GGG + chr3_4:55319058-55319077 Msa0507680:intron 20.0%
!! AATTTATGATCATGTTAAAC+TGG + chr3_4:55319309-55319328 Msa0507680:three_prime_UTR 20.0%
! AAATATTAGGGATTTGACAA+TGG - chr3_4:55311778-55311797 None:intergenic 25.0%
! ATGAGGTTCTCAAAATATTA+GGG - chr3_4:55311790-55311809 None:intergenic 25.0%
! GTCATAAAAACAAAATGATG+AGG - chr3_4:55311807-55311826 None:intergenic 25.0%
! TAAGAAAAATTGGAAGTAGA+AGG - chr3_4:55311886-55311905 None:intergenic 25.0%
!! TTCTACTTCCAATTTTTCTT+AGG + chr3_4:55311885-55311904 Msa0507680:five_prime_UTR 25.0%
! AAATTGAGAAATGCAGAAAT+GGG - chr3_4:55311941-55311960 None:intergenic 25.0%
! AAAATTGAGAAATGCAGAAA+TGG - chr3_4:55311942-55311961 None:intergenic 25.0%
! TTTGAGAAACAAAAAGAGAA+AGG - chr3_4:55311976-55311995 None:intergenic 25.0%
! TTTGATTATCAACTGAATTG+TGG + chr3_4:55312127-55312146 Msa0507680:intron 25.0%
! TTGATTATCAACTGAATTGT+GGG + chr3_4:55312128-55312147 Msa0507680:intron 25.0%
! TGATAATTGTTTGATTAGTG+GGG + chr3_4:55312153-55312172 Msa0507680:intron 25.0%
!! GTTATTAATCTGAAGTTTGA+AGG + chr3_4:55312328-55312347 Msa0507680:intron 25.0%
! ATGAAATTTCTGTTCTACTT+TGG + chr3_4:55312500-55312519 Msa0507680:intron 25.0%
!! TTGTTTCTTATAAAAAGGAC+CGG - chr3_4:55312669-55312688 None:intergenic 25.0%
!! CCCATTTGTTTCTTATAAAA+AGG - chr3_4:55312674-55312693 None:intergenic 25.0%
!!! TCAACTAAAGTTGATGTATT+TGG - chr3_4:55312741-55312760 None:intergenic 25.0%
!! CTTTTTACAAGAGACAAAAT+TGG - chr3_4:55312764-55312783 None:intergenic 25.0%
!! CAATTTTGTCTCTTGTAAAA+AGG + chr3_4:55312762-55312781 Msa0507680:intron 25.0%
! TAACACTGAATTTGTATTTC+AGG + chr3_4:55313014-55313033 Msa0507680:intron 25.0%
!!! TTTGGCTTTAGTGAAATATT+TGG + chr3_4:55313308-55313327 Msa0507680:CDS 25.0%
! TATGAATATAGATACTCCAT+CGG + chr3_4:55313341-55313360 Msa0507680:CDS 25.0%
! GTCTTTATAGAATTCTACAA+GGG - chr3_4:55313598-55313617 None:intergenic 25.0%
! AGTCTTTATAGAATTCTACA+AGG - chr3_4:55313599-55313618 None:intergenic 25.0%
! TTGTAGAATTCTATAAAGAC+TGG + chr3_4:55313598-55313617 Msa0507680:CDS 25.0%
!!! CGAGTTACTTTTCAATAATT+TGG + chr3_4:55314005-55314024 Msa0507680:intron 25.0%
!! ACTTTTCAATAATTTGGATC+AGG + chr3_4:55314011-55314030 Msa0507680:intron 25.0%
! GATTCTGAATTTGACAATTA+AGG + chr3_4:55314185-55314204 Msa0507680:intron 25.0%
! TTCTGAATTTGACAATTAAG+GGG + chr3_4:55314187-55314206 Msa0507680:intron 25.0%
!! ATTTCTGAAGAATATTATGC+TGG + chr3_4:55314295-55314314 Msa0507680:intron 25.0%
!! CATCTAAAGTATCAATCATA+TGG - chr3_4:55314735-55314754 None:intergenic 25.0%
! AAGTGGAAATTGATTAAACT+TGG - chr3_4:55314788-55314807 None:intergenic 25.0%
! TTTGATTATCATGGAATGAT+TGG + chr3_4:55314819-55314838 Msa0507680:intron 25.0%
!! ATCATTTTCAGTTGAATCTA+TGG + chr3_4:55314849-55314868 Msa0507680:intron 25.0%
! AATCTATGGATGATTAATTC+TGG + chr3_4:55314863-55314882 Msa0507680:intron 25.0%
! ACTGGAAATATGATTAAAAC+TGG + chr3_4:55314899-55314918 Msa0507680:intron 25.0%
! TTTGAGTAGTATGTTGTTAA+AGG + chr3_4:55314928-55314947 Msa0507680:intron 25.0%
! TTGAGTAGTATGTTGTTAAA+GGG + chr3_4:55314929-55314948 Msa0507680:intron 25.0%
! TCTCCAATAAAATTCCATAT+TGG + chr3_4:55315257-55315276 Msa0507680:intron 25.0%
!! CATCCAATATGGAATTTTAT+TGG - chr3_4:55315263-55315282 None:intergenic 25.0%
! ATATCAAATAGTAAGTGGAA+TGG - chr3_4:55315392-55315411 None:intergenic 25.0%
! TTTAAATAATCTCAGAGACA+CGG - chr3_4:55315471-55315490 None:intergenic 25.0%
!!! CATTACTTTTATAATGGACT+TGG + chr3_4:55316391-55316410 Msa0507680:intron 25.0%
!! CATGAAGATAGTCAATATTT+TGG + chr3_4:55316836-55316855 Msa0507680:intron 25.0%
! TATAATACACCTAAGTAACA+AGG - chr3_4:55317180-55317199 None:intergenic 25.0%
!! TGTTACTTAGGTGTATTATA+CGG + chr3_4:55317180-55317199 Msa0507680:intron 25.0%
!! AATATTTGGTAATCCCTTAA+AGG + chr3_4:55317344-55317363 Msa0507680:intron 25.0%
! TAAGGTAATATCATGAATCT+CGG - chr3_4:55317618-55317637 None:intergenic 25.0%
!! TGCTCTTTATTCAACTATTT+TGG + chr3_4:55317646-55317665 Msa0507680:intron 25.0%
! CTAAATATAGTCATCTTAGA+TGG - chr3_4:55317682-55317701 None:intergenic 25.0%
!! CATCTAAGATGACTATATTT+AGG + chr3_4:55317680-55317699 Msa0507680:intron 25.0%
! AAGATCTTAATAATGTGCTT+TGG + chr3_4:55317715-55317734 Msa0507680:intron 25.0%
! CTTGTCAATTTAATCATCAA+TGG - chr3_4:55317744-55317763 None:intergenic 25.0%
!! CATTGATGATTAAATTGACA+AGG + chr3_4:55317742-55317761 Msa0507680:intron 25.0%
! AGAGAAAATTACAGTAACAT+AGG - chr3_4:55318202-55318221 None:intergenic 25.0%
!!! CTGTTACTTTTAAGTAACTA+CGG - chr3_4:55318257-55318276 None:intergenic 25.0%
! TAAAAGTAATCATATGGAAG+GGG - chr3_4:55318338-55318357 None:intergenic 25.0%
! GTAAAAGTAATCATATGGAA+GGG - chr3_4:55318339-55318358 None:intergenic 25.0%
! AGTAAAAGTAATCATATGGA+AGG - chr3_4:55318340-55318359 None:intergenic 25.0%
!! ATATTGATAGAAACTGGTTT+CGG - chr3_4:55318428-55318447 None:intergenic 25.0%
! ATATATAAGTCAGAAACTGA+AGG + chr3_4:55318475-55318494 Msa0507680:intron 25.0%
! AAAAACCCAATTCCATTAAA+GGG - chr3_4:55318596-55318615 None:intergenic 25.0%
! AAAAAACCCAATTCCATTAA+AGG - chr3_4:55318597-55318616 None:intergenic 25.0%
! AAAAAAAATCAGAAGGTTGA+GGG - chr3_4:55318664-55318683 None:intergenic 25.0%
! AAAAAAAAATCAGAAGGTTG+AGG - chr3_4:55318665-55318684 None:intergenic 25.0%
!!! CTTTTGGAGATTTCTAATTT+TGG + chr3_4:55319057-55319076 Msa0507680:intron 25.0%
!! TTTGGAGATTTCTAATTTTG+GGG + chr3_4:55319059-55319078 Msa0507680:intron 25.0%
!!! TAATTTTGGGGTTTGTAATT+AGG + chr3_4:55319071-55319090 Msa0507680:intron 25.0%
!!! ATCTTTTCATGTTTTGTTGA+TGG + chr3_4:55319171-55319190 Msa0507680:intron 25.0%
GATGAGGTTCTCAAAATATT+AGG - chr3_4:55311791-55311810 None:intergenic 30.0%
AATTGGAAGTAGAAGGAAAA+TGG - chr3_4:55311879-55311898 None:intergenic 30.0%
!! AATGTCTCATGTTGACTTAA+GGG + chr3_4:55312293-55312312 Msa0507680:intron 30.0%
AAATAAGACAGACAGGATTT+AGG + chr3_4:55312539-55312558 Msa0507680:intron 30.0%
AATAAGACAGACAGGATTTA+GGG + chr3_4:55312540-55312559 Msa0507680:intron 30.0%
AATAAGCTGTTTATCCAAAC+AGG - chr3_4:55312566-55312585 None:intergenic 30.0%
! TTTTAATATCATACTCCCTC+CGG + chr3_4:55312647-55312666 Msa0507680:intron 30.0%
! ATAAATTTGGTGAGACTGTT+TGG - chr3_4:55312929-55312948 None:intergenic 30.0%
CTTATCTACTGGCATAAATT+TGG - chr3_4:55312942-55312961 None:intergenic 30.0%
! TTGTATTTCAGGTGGTATAA+AGG + chr3_4:55313025-55313044 Msa0507680:intron 30.0%
TGTTATGAAGAACTGAAAAG+TGG + chr3_4:55313129-55313148 Msa0507680:CDS 30.0%
! TTTCTTTTCTTAGGACAGTA+TGG - chr3_4:55313195-55313214 None:intergenic 30.0%
ACTGTCCTAAGAAAAGAAAA+CGG + chr3_4:55313196-55313215 Msa0507680:CDS 30.0%
! TAATCCCGTTTTCTTTTCTT+AGG - chr3_4:55313204-55313223 None:intergenic 30.0%
TTAACTATAACTCCAATCCA+AGG - chr3_4:55313438-55313457 None:intergenic 30.0%
TTTATAGAATTCTACAAGGG+CGG - chr3_4:55313595-55313614 None:intergenic 30.0%
CTCAATAATGTTGGTCAAAT+TGG - chr3_4:55313856-55313875 None:intergenic 30.0%
CAATTTGACCAACATTATTG+AGG + chr3_4:55313854-55313873 Msa0507680:CDS 30.0%
! GTTTTTGACCTCAATAATGT+TGG - chr3_4:55313865-55313884 None:intergenic 30.0%
! TGTCATAGCAGAATTCATTT+TGG - chr3_4:55313931-55313950 None:intergenic 30.0%
CTCATTCAAGCTTATAATGA+AGG + chr3_4:55313963-55313982 Msa0507680:CDS 30.0%
TCTGAATTTGACAATTAAGG+GGG + chr3_4:55314188-55314207 Msa0507680:intron 30.0%
GTTGCACCATAAATAAAGTT+TGG + chr3_4:55314259-55314278 Msa0507680:intron 30.0%
! ACGATGCCAAACTTTATTTA+TGG - chr3_4:55314268-55314287 None:intergenic 30.0%
CGTGATCATTAAAAATCCTT+TGG - chr3_4:55314453-55314472 None:intergenic 30.0%
GATTCCTGTAGAATTTGTAT+TGG + chr3_4:55314644-55314663 Msa0507680:intron 30.0%
TTCTCCAATACAAATTCTAC+AGG - chr3_4:55314651-55314670 None:intergenic 30.0%
ATCAAACATGCTAAGTAAAG+TGG - chr3_4:55314805-55314824 None:intergenic 30.0%
CTTAGCATGTTTGATTATCA+TGG + chr3_4:55314810-55314829 Msa0507680:intron 30.0%
ATTATCATGGAATGATTGGT+TGG + chr3_4:55314823-55314842 Msa0507680:intron 30.0%
! TGATTAATTCTGGAAAGAGT+CGG + chr3_4:55314873-55314892 Msa0507680:intron 30.0%
ATCTGTCTATCTGTGTTTAA+CGG + chr3_4:55315046-55315065 Msa0507680:intron 30.0%
ACTTGTGATTTAAGCAACAA+GGG - chr3_4:55315109-55315128 None:intergenic 30.0%
!! ATTGTTGGCTCTACTTAAAA+TGG + chr3_4:55315163-55315182 Msa0507680:intron 30.0%
ATATGAAATTCGGGTAATGA+GGG + chr3_4:55315224-55315243 Msa0507680:intron 30.0%
! AGGAAAAAAGTTTTACAGGA+TGG - chr3_4:55315324-55315343 None:intergenic 30.0%
AAATAGTAAGTGGAATGGAA+AGG - chr3_4:55315387-55315406 None:intergenic 30.0%
!!! AGATGTAGAAGTTTTGAAGA+AGG + chr3_4:55315881-55315900 Msa0507680:CDS 30.0%
! AAGGTAGATGATTTGCATAT+GGG + chr3_4:55315900-55315919 Msa0507680:CDS 30.0%
AAAGCACAACTTACACATAT+AGG - chr3_4:55316228-55316247 None:intergenic 30.0%
TAATGCTTTCTCTATCTTGT+AGG + chr3_4:55316493-55316512 Msa0507680:intron 30.0%
AATGCTTTCTCTATCTTGTA+GGG + chr3_4:55316494-55316513 Msa0507680:intron 30.0%
! TTGTAGGGCATTAAAGATAT+AGG + chr3_4:55316509-55316528 Msa0507680:intron 30.0%
! ATCTTTTCTTCATAGCTTCA+AGG - chr3_4:55316589-55316608 None:intergenic 30.0%
GAAGAAAAGATATAATGAGG+AGG + chr3_4:55316598-55316617 Msa0507680:CDS 30.0%
TTCAGAACTATGTTCATTGT+GGG + chr3_4:55316637-55316656 Msa0507680:CDS 30.0%
TAATGAAGCATGTAGATTTC+TGG - chr3_4:55316766-55316785 None:intergenic 30.0%
! TATTGACTATCTTCATGAAG+AGG - chr3_4:55316833-55316852 None:intergenic 30.0%
TACTCTTGATTGGAACTATT+TGG + chr3_4:55316866-55316885 Msa0507680:intron 30.0%
ATTACATTTACAGGTTCAGA+AGG - chr3_4:55316892-55316911 None:intergenic 30.0%
AGAGAAGGAATTACATTTAC+AGG - chr3_4:55316901-55316920 None:intergenic 30.0%
TTTGTATCCAAGTGATTTAC+TGG + chr3_4:55316922-55316941 Msa0507680:intron 30.0%
AAATATGGTAGGGGATTAAT+AGG + chr3_4:55316971-55316990 Msa0507680:intron 30.0%
! ATGCAAAATCCTTGTTACTT+AGG + chr3_4:55317168-55317187 Msa0507680:intron 30.0%
GTTACTTAGGTGTATTATAC+GGG + chr3_4:55317181-55317200 Msa0507680:intron 30.0%
TTACTTAGGTGTATTATACG+GGG + chr3_4:55317182-55317201 Msa0507680:intron 30.0%
AAGAATTGAGGTGGAATATT+TGG + chr3_4:55317330-55317349 Msa0507680:intron 30.0%
AAATGCAACAAGTCCTTTAA+GGG - chr3_4:55317360-55317379 None:intergenic 30.0%
AAAATGCAACAAGTCCTTTA+AGG - chr3_4:55317361-55317380 None:intergenic 30.0%
AATACAGTAATACTCATAGC+TGG + chr3_4:55317572-55317591 Msa0507680:intron 30.0%
ATGAATCTCGGGATATTATA+GGG - chr3_4:55317606-55317625 None:intergenic 30.0%
AAGGTAATATCATGAATCTC+GGG - chr3_4:55317617-55317636 None:intergenic 30.0%
ATATAGTCATCTTAGATGGT+AGG - chr3_4:55317678-55317697 None:intergenic 30.0%
GTCAATTTAATCATCAATGG+TGG - chr3_4:55317741-55317760 None:intergenic 30.0%
CGTCATCTTTAATAATTTCC+TGG - chr3_4:55317940-55317959 None:intergenic 30.0%
TTTATAGTTCCATAACTCTG+AGG - chr3_4:55318071-55318090 None:intergenic 30.0%
AGAGTTATGGAACTATAAAG+CGG + chr3_4:55318072-55318091 Msa0507680:CDS 30.0%
ATTCAAAGAAGTAACTTAGG+TGG - chr3_4:55318280-55318299 None:intergenic 30.0%
GAGATTCAAAGAAGTAACTT+AGG - chr3_4:55318283-55318302 None:intergenic 30.0%
TCTTCTCAAGAAATTACAAG+TGG + chr3_4:55318301-55318320 Msa0507680:intron 30.0%
AAAAGTAATCATATGGAAGG+GGG - chr3_4:55318337-55318356 None:intergenic 30.0%
AAGAAAAAGCTAAGACAAAG+AGG - chr3_4:55318568-55318587 None:intergenic 30.0%
! TTTTCTTACAGTCCCTTTAA+TGG + chr3_4:55318581-55318600 Msa0507680:intron 30.0%
TTTGAAAGATCTATCACTGT+GGG - chr3_4:55318621-55318640 None:intergenic 30.0%
!! TTTTGAAAGATCTATCACTG+TGG - chr3_4:55318622-55318641 None:intergenic 30.0%
AAAAAAATCAGAAGGTTGAG+GGG - chr3_4:55318663-55318682 None:intergenic 30.0%
!!! TTTTTGCACTGGTTTTGTTT+TGG + chr3_4:55318744-55318763 Msa0507680:intron 30.0%
CTACAACAAGAAAACAACAA+AGG - chr3_4:55318782-55318801 None:intergenic 30.0%
! CATGTTTTCCTTAACCAAAA+AGG + chr3_4:55318855-55318874 Msa0507680:intron 30.0%
AGAATAAAACTCAACATCTG+TGG - chr3_4:55318951-55318970 None:intergenic 30.0%
! AGCAAATTGATTCCAAACAT+AGG - chr3_4:55319124-55319143 None:intergenic 30.0%
TTATGCACAACCTTAATCTT+CGG - chr3_4:55319282-55319301 None:intergenic 30.0%
CTTTGTATTATCTCTAGCAT+GGG + chr3_4:55319389-55319408 Msa0507680:three_prime_UTR 30.0%
AAGTAGAAGGAAAATGGATC+TGG - chr3_4:55311873-55311892 None:intergenic 35.0%
GAGAAACAAAAAGAGAAAGG+AGG - chr3_4:55311973-55311992 None:intergenic 35.0%
!! GAATGTCTCATGTTGACTTA+AGG + chr3_4:55312292-55312311 Msa0507680:intron 35.0%
!! ATGTCTCATGTTGACTTAAG+GGG + chr3_4:55312294-55312313 Msa0507680:intron 35.0%
TATGTCAAGTCACACATTTG+AGG + chr3_4:55312435-55312454 Msa0507680:intron 35.0%
ATGTCAAGTCACACATTTGA+GGG + chr3_4:55312436-55312455 Msa0507680:intron 35.0%
!! TGTCTGTCTTATTTCAAGCT+TGG - chr3_4:55312533-55312552 None:intergenic 35.0%
AAGCTTGAAATAAGACAGAC+AGG + chr3_4:55312532-55312551 Msa0507680:intron 35.0%
TTCTTATAAAAAGGACCGGA+GGG - chr3_4:55312665-55312684 None:intergenic 35.0%
TTTCTTATAAAAAGGACCGG+AGG - chr3_4:55312666-55312685 None:intergenic 35.0%
TTGTCTCTTGTAAAAAGGAC+CGG + chr3_4:55312767-55312786 Msa0507680:intron 35.0%
! TCATTTTATCTTACTCCCTC+CGG - chr3_4:55312789-55312808 None:intergenic 35.0%
ACCAATTTGAGCTTATCTAC+TGG - chr3_4:55312953-55312972 None:intergenic 35.0%
CACTGAATTTGTATTTCAGG+TGG + chr3_4:55313017-55313036 Msa0507680:intron 35.0%
!! TTCTGAGATAAGTGAGTATG+AGG + chr3_4:55313101-55313120 Msa0507680:CDS 35.0%
AAGTCAGAATGTGAAAACCT+CGG + chr3_4:55313152-55313171 Msa0507680:CDS 35.0%
CTGTCCTAAGAAAAGAAAAC+GGG + chr3_4:55313197-55313216 Msa0507680:CDS 35.0%
! AAATGAGTAGCCTTTTCTCT+TGG - chr3_4:55313291-55313310 None:intergenic 35.0%
AAGAGAAAAGGCTACTCATT+TGG + chr3_4:55313290-55313309 Msa0507680:CDS 35.0%
! ATTCTGATGAGCAGTTTGTT+TGG + chr3_4:55313412-55313431 Msa0507680:CDS 35.0%
TAGTTAATATTCCCACTAGC+AGG + chr3_4:55313451-55313470 Msa0507680:CDS 35.0%
AGTTAATATTCCCACTAGCA+GGG + chr3_4:55313452-55313471 Msa0507680:CDS 35.0%
! TCTTTTTGTAGTCATCAGCT+CGG - chr3_4:55313737-55313756 None:intergenic 35.0%
ATAATTTGGATCAGGACTTG+TGG + chr3_4:55314019-55314038 Msa0507680:intron 35.0%
CAAATTCAGAATCAACCCAT+TGG - chr3_4:55314178-55314197 None:intergenic 35.0%
GAAAATACAGTCAAGTGCTA+AGG + chr3_4:55314420-55314439 Msa0507680:CDS 35.0%
AAGAAAGTTGCTAGAAGAGA+TGG + chr3_4:55314567-55314586 Msa0507680:CDS 35.0%
!! TGTGTTGCTGCTTTCAATTA+AGG + chr3_4:55314753-55314772 Msa0507680:intron 35.0%
TCCAAAACAAGTTAAGTGTC+TGG + chr3_4:55314958-55314977 Msa0507680:intron 35.0%
!!! TCCAGACACTTAACTTGTTT+TGG - chr3_4:55314962-55314981 None:intergenic 35.0%
! TGTGTCTCTGATTTTCATCT+AGG + chr3_4:55315071-55315090 Msa0507680:intron 35.0%
CACTTGTGATTTAAGCAACA+AGG - chr3_4:55315110-55315129 None:intergenic 35.0%
CATAGCATATAACCACTCAT+TGG - chr3_4:55315195-55315214 None:intergenic 35.0%
GATATGAAATTCGGGTAATG+AGG + chr3_4:55315223-55315242 Msa0507680:intron 35.0%
! AGGGAGGAAAAAAGTTTTAC+AGG - chr3_4:55315328-55315347 None:intergenic 35.0%
!!! TTTTTTCCTCCCTCCAATTT+GGG + chr3_4:55315335-55315354 Msa0507680:intron 35.0%
!! CAAGCTGAATGATTTTAGCA+TGG - chr3_4:55315770-55315789 None:intergenic 35.0%
ACTGGATATGAAACAAAAGC+TGG + chr3_4:55315797-55315816 Msa0507680:CDS 35.0%
TATGAAACAAAAGCTGGAAC+TGG + chr3_4:55315803-55315822 Msa0507680:CDS 35.0%
! GAAGGTAGATGATTTGCATA+TGG + chr3_4:55315899-55315918 Msa0507680:CDS 35.0%
! ATGATTTGCATATGGGTTTG+AGG + chr3_4:55315907-55315926 Msa0507680:CDS 35.0%
! TGATTTGCATATGGGTTTGA+GGG + chr3_4:55315908-55315927 Msa0507680:CDS 35.0%
GAACCAAACACTAATCATCA+AGG + chr3_4:55315965-55315984 Msa0507680:CDS 35.0%
CATATTGGTGTGAAGAGAAT+GGG + chr3_4:55316542-55316561 Msa0507680:CDS 35.0%
ATATTGGTGTGAAGAGAATG+GGG + chr3_4:55316543-55316562 Msa0507680:CDS 35.0%
TTCTTCATAGCTTCAAGGAA+CGG - chr3_4:55316584-55316603 None:intergenic 35.0%
CTTCAGAACTATGTTCATTG+TGG + chr3_4:55316636-55316655 Msa0507680:CDS 35.0%
AGTATCTAAAAGACCCAGAT+TGG + chr3_4:55316663-55316682 Msa0507680:CDS 35.0%
CATGATTGAAGGGAAAGAAA+AGG + chr3_4:55316703-55316722 Msa0507680:CDS 35.0%
ATTGAAGGGAAAGAAAAGGT+AGG + chr3_4:55316707-55316726 Msa0507680:intron 35.0%
CACTTGGATACAAAAAGAGA+AGG - chr3_4:55316916-55316935 None:intergenic 35.0%
!! CGAAAAAAGTATCTGCTGTT+TGG + chr3_4:55316948-55316967 Msa0507680:intron 35.0%
! GTATCTGCTGTTTGGAAATA+TGG + chr3_4:55316956-55316975 Msa0507680:intron 35.0%
! TGCTGTTTGGAAATATGGTA+GGG + chr3_4:55316961-55316980 Msa0507680:intron 35.0%
TCATTCTGTGTTTGAAAGCT+CGG + chr3_4:55317084-55317103 Msa0507680:intron 35.0%
TATTATACGGGGAAAGTGAT+GGG + chr3_4:55317193-55317212 Msa0507680:intron 35.0%
TGAGTGAATACCAAAATGAG+TGG + chr3_4:55317238-55317257 Msa0507680:intron 35.0%
AATACCAAAATGAGTGGTAG+TGG + chr3_4:55317244-55317263 Msa0507680:intron 35.0%
ATACCAAAATGAGTGGTAGT+GGG + chr3_4:55317245-55317264 Msa0507680:intron 35.0%
CTGGAAAACAGAGAAATACA+TGG - chr3_4:55317390-55317409 None:intergenic 35.0%
! ATTTTCACTTTCTCTGATGC+TGG - chr3_4:55317409-55317428 None:intergenic 35.0%
CAAAGGGATTGCAATTTACA+TGG - chr3_4:55317504-55317523 None:intergenic 35.0%
TAATTCAGAAGAGAGAAGTC+TGG + chr3_4:55317543-55317562 Msa0507680:intron 35.0%
CATGAATCTCGGGATATTAT+AGG - chr3_4:55317607-55317626 None:intergenic 35.0%
ATAAACTGTCCTAAAGCAGT+GGG - chr3_4:55317798-55317817 None:intergenic 35.0%
AATAAACTGTCCTAAAGCAG+TGG - chr3_4:55317799-55317818 None:intergenic 35.0%
! TTCTACGCATTTTTCATTCC+AGG + chr3_4:55317919-55317938 Msa0507680:intron 35.0%
!! AATGGACTGAGAAAAGAAGT+GGG + chr3_4:55317971-55317990 Msa0507680:CDS 35.0%
GATATGTAACCTCAGAGTTA+TGG + chr3_4:55318059-55318078 Msa0507680:CDS 35.0%
GAGTTATGGAACTATAAAGC+GGG + chr3_4:55318073-55318092 Msa0507680:CDS 35.0%
! AGAAGGAGTGAAGTTTTTGT+TGG + chr3_4:55318114-55318133 Msa0507680:CDS 35.0%
AGAAGAAAGGAATGTTGTGA+AGG + chr3_4:55318152-55318171 Msa0507680:CDS 35.0%
AATTGGGAATTTCCCACTTA+AGG - chr3_4:55318393-55318412 None:intergenic 35.0%
TACAGTCCCTTTAATGGAAT+TGG + chr3_4:55318587-55318606 Msa0507680:intron 35.0%
ACAGTCCCTTTAATGGAATT+GGG + chr3_4:55318588-55318607 Msa0507680:intron 35.0%
!!! TGCAGTTTCTTTTTTTGCAC+TGG + chr3_4:55318733-55318752 Msa0507680:intron 35.0%
!! GATTTGTTGAAATTGAGCAG+CGG + chr3_4:55318902-55318921 Msa0507680:intron 35.0%
!!! TTTCATGTTTTGTTGATGGC+AGG + chr3_4:55319175-55319194 Msa0507680:intron 35.0%
CCATGCACAAATTATTCTCT+CGG - chr3_4:55319220-55319239 None:intergenic 35.0%
! AGAGAATAATTTGTGCATGG+CGG + chr3_4:55319220-55319239 Msa0507680:three_prime_UTR 35.0%
TACAAAAGCAGTTTGAGTCT+CGG - chr3_4:55319361-55319380 None:intergenic 35.0%
CCATGCTAGAGATAATACAA+AGG - chr3_4:55319391-55319410 None:intergenic 35.0%
CCTTTGTATTATCTCTAGCA+TGG + chr3_4:55319388-55319407 Msa0507680:three_prime_UTR 35.0%
!!! TGATTTTGTTTTGCGTATCC+AGG + chr3_4:55319494-55319513 Msa0507680:three_prime_UTR 35.0%
!!! ACTTAGTTTTGATCAAGACC+TGG - chr3_4:55319515-55319534 None:intergenic 35.0%
! GCTCTCTAAGAAGAGAGTTT+AGG - chr3_4:55311829-55311848 None:intergenic 40.0%
TTTGGTGAGACTGTTTGGTA+GGG - chr3_4:55312924-55312943 None:intergenic 40.0%
! ATTTGGTGAGACTGTTTGGT+AGG - chr3_4:55312925-55312944 None:intergenic 40.0%
GCCAGTAGATAAGCTCAAAT+TGG + chr3_4:55312949-55312968 Msa0507680:intron 40.0%
! TTTCAGGTGGTATAAAGGCT+AGG + chr3_4:55313030-55313049 Msa0507680:intron 40.0%
GAAGAGAAAGCCAAGAGAAA+AGG + chr3_4:55313278-55313297 Msa0507680:CDS 40.0%
TTATCAGCACCGTTATCAGT+TGG - chr3_4:55313369-55313388 None:intergenic 40.0%
!! ACTGATAACGGTGCTGATAA+CGG + chr3_4:55313369-55313388 Msa0507680:CDS 40.0%
TCTATACTCATCCCTAAGCT+TGG - chr3_4:55313511-55313530 None:intergenic 40.0%
! GAATTCTATAAAGACTGGCC+CGG + chr3_4:55313603-55313622 Msa0507680:CDS 40.0%
TGCAAGTGCATTATCTAAGC+CGG - chr3_4:55313625-55313644 None:intergenic 40.0%
TGTTAATACAGAGCCGAAGT+CGG + chr3_4:55313692-55313711 Msa0507680:CDS 40.0%
! CTTTTTGTAGTCATCAGCTC+GGG - chr3_4:55313736-55313755 None:intergenic 40.0%
TGGTGAATATCTGCGAAAGA+TGG + chr3_4:55313767-55313786 Msa0507680:CDS 40.0%
GGTGAATATCTGCGAAAGAT+GGG + chr3_4:55313768-55313787 Msa0507680:CDS 40.0%
CAAAACCATACCTGAACTTC+AGG + chr3_4:55313797-55313816 Msa0507680:CDS 40.0%
TTCTTCCTGAAGTTCAGGTA+TGG - chr3_4:55313805-55313824 None:intergenic 40.0%
TATGTAGTGCAACTTGCAAC+TGG + chr3_4:55314113-55314132 Msa0507680:intron 40.0%
! TAGCAGTATGTGGCTATTTC+CGG - chr3_4:55314225-55314244 None:intergenic 40.0%
TACTGCTAGGATCATTGCAA+CGG + chr3_4:55314237-55314256 Msa0507680:intron 40.0%
AAAGTTGCTAGAAGAGATGG+AGG + chr3_4:55314570-55314589 Msa0507680:CDS 40.0%
! TCTCTGATTTTCATCTAGGC+AGG + chr3_4:55315075-55315094 Msa0507680:intron 40.0%
! CTCTGATTTTCATCTAGGCA+GGG + chr3_4:55315076-55315095 Msa0507680:intron 40.0%
TGATTTAAGCAACAAGGGAC+GGG - chr3_4:55315104-55315123 None:intergenic 40.0%
GTGATTTAAGCAACAAGGGA+CGG - chr3_4:55315105-55315124 None:intergenic 40.0%
TGCTTAAATCACAAGTGACG+TGG + chr3_4:55315113-55315132 Msa0507680:intron 40.0%
AAATCACAAGTGACGTGGAA+CGG + chr3_4:55315118-55315137 Msa0507680:intron 40.0%
CCATTGCAATGCATCCAATA+TGG - chr3_4:55315274-55315293 None:intergenic 40.0%
CCATATTGGATGCATTGCAA+TGG + chr3_4:55315271-55315290 Msa0507680:intron 40.0%
!!! CTTTTTTCCTCCCTCCAATT+TGG + chr3_4:55315334-55315353 Msa0507680:intron 40.0%
! TTTTTCCTCCCTCCAATTTG+GGG + chr3_4:55315336-55315355 Msa0507680:intron 40.0%
!! AAGGCTTTGTTTAACTCTGC+TGG + chr3_4:55315518-55315537 Msa0507680:intron 40.0%
GAGAAATAGCTCTCTTCAGA+TGG + chr3_4:55315567-55315586 Msa0507680:CDS 40.0%
CATTCAGCTTGAAAGACAAC+TGG + chr3_4:55315779-55315798 Msa0507680:CDS 40.0%
CTGGAGATTCAGCAACTAAA+AGG + chr3_4:55315822-55315841 Msa0507680:CDS 40.0%
! GCTCCTTGATGATTAGTGTT+TGG - chr3_4:55315971-55315990 None:intergenic 40.0%
TAAGAGTAACGATGAACTGC+AGG + chr3_4:55315992-55316011 Msa0507680:CDS 40.0%
ATAGGTACTCGAGTCCATAT+TGG + chr3_4:55316527-55316546 Msa0507680:CDS 40.0%
CCATTCTCTTCACACCAATA+TGG - chr3_4:55316544-55316563 None:intergenic 40.0%
CCATATTGGTGTGAAGAGAA+TGG + chr3_4:55316541-55316560 Msa0507680:CDS 40.0%
TATTGGTGTGAAGAGAATGG+GGG + chr3_4:55316544-55316563 Msa0507680:CDS 40.0%
! TGGTTGACTCTACTCTTGAT+TGG + chr3_4:55316856-55316875 Msa0507680:intron 40.0%
TTCGAGACCAGTAAATCACT+TGG - chr3_4:55316932-55316951 None:intergenic 40.0%
! CTGCTGTTTGGAAATATGGT+AGG + chr3_4:55316960-55316979 Msa0507680:intron 40.0%
GCTGTTTGGAAATATGGTAG+GGG + chr3_4:55316962-55316981 Msa0507680:intron 40.0%
!! GAAAGTGCAGTTGTTTCTCA+AGG - chr3_4:55317064-55317083 None:intergenic 40.0%
GTATTATACGGGGAAAGTGA+TGG + chr3_4:55317192-55317211 Msa0507680:intron 40.0%
!! AAAGTGATGGGCAGTAGTAA+TGG + chr3_4:55317205-55317224 Msa0507680:intron 40.0%
! TACCAAAATGAGTGGTAGTG+GGG + chr3_4:55317246-55317265 Msa0507680:intron 40.0%
!! GGGAGTAGGAATTAGTTTGT+GGG + chr3_4:55317268-55317287 Msa0507680:intron 40.0%
TGGGAAACGAGAATAAAAGC+AGG + chr3_4:55317287-55317306 Msa0507680:intron 40.0%
AACGAGAATAAAAGCAGGAG+AGG + chr3_4:55317292-55317311 Msa0507680:intron 40.0%
AGAATAAAAGCAGGAGAGGA+AGG + chr3_4:55317296-55317315 Msa0507680:intron 40.0%
GAATAAAAGCAGGAGAGGAA+GGG + chr3_4:55317297-55317316 Msa0507680:intron 40.0%
GGTGGAACATAGAAGAATTG+AGG + chr3_4:55317318-55317337 Msa0507680:intron 40.0%
GGAACATAGAAGAATTGAGG+TGG + chr3_4:55317321-55317340 Msa0507680:intron 40.0%
CTCGGGATATTATAGGGAAT+CGG - chr3_4:55317600-55317619 None:intergenic 40.0%
TGGGGGGAAATGAAAGTTAA+TGG - chr3_4:55317779-55317798 None:intergenic 40.0%
TAAACTGTCCTAAAGCAGTG+GGG - chr3_4:55317797-55317816 None:intergenic 40.0%
AAACTCCTAACGATTGCACT+TGG + chr3_4:55317888-55317907 Msa0507680:intron 40.0%
GATAACCAAGTGCAATCGTT+AGG - chr3_4:55317896-55317915 None:intergenic 40.0%
AACGATTGCACTTGGTTATC+TGG + chr3_4:55317896-55317915 Msa0507680:intron 40.0%
GATGACGATGAAAAGCTGAA+TGG + chr3_4:55317953-55317972 Msa0507680:CDS 40.0%
!! GAATGGACTGAGAAAAGAAG+TGG + chr3_4:55317970-55317989 Msa0507680:CDS 40.0%
GAGAAAAGAAGTGGGTGAAA+AGG + chr3_4:55317979-55317998 Msa0507680:CDS 40.0%
TATGGAACTATAAAGCGGGA+AGG + chr3_4:55318077-55318096 Msa0507680:CDS 40.0%
! TGAAGTTTTTGTTGGACTGC+TGG + chr3_4:55318122-55318141 Msa0507680:CDS 40.0%
AGTAACTACGGTACAACAGT+TGG - chr3_4:55318245-55318264 None:intergenic 40.0%
TGGGAAATTCCCAATTCCAT+CGG + chr3_4:55318397-55318416 Msa0507680:intron 40.0%
! TCGGATTTTCCGATGGAATT+GGG - chr3_4:55318409-55318428 None:intergenic 40.0%
! TTCGGATTTTCCGATGGAAT+TGG - chr3_4:55318410-55318429 None:intergenic 40.0%
AAGCTAAGACAAAGAGGAAG+AGG - chr3_4:55318562-55318581 None:intergenic 40.0%
ATCTGTGGATTCCATCTCTA+CGG - chr3_4:55318936-55318955 None:intergenic 40.0%
ATGAGATGGAATTAGTAGCG+TGG - chr3_4:55318976-55318995 None:intergenic 40.0%
GAGATAAAGTAGCATGCACA+TGG + chr3_4:55319096-55319115 Msa0507680:intron 40.0%
ATGCACATGGATCCTATGTT+TGG + chr3_4:55319109-55319128 Msa0507680:intron 40.0%
! CCGAGAGAATAATTTGTGCA+TGG + chr3_4:55319217-55319236 Msa0507680:three_prime_UTR 40.0%
GGTTTGCAGCTCTACAAATA+TGG - chr3_4:55319261-55319280 None:intergenic 40.0%
AGTAGTCACACACACTCACA+CGG + chr3_4:55311713-55311732 Msa0507680:five_prime_UTR 45.0%
!! CTCTCTTCTTAGAGAGCGTT+AGG + chr3_4:55311832-55311851 Msa0507680:five_prime_UTR 45.0%
TCTCTTGTAAAAAGGACCGG+AGG + chr3_4:55312770-55312789 Msa0507680:intron 45.0%
CTCTTGTAAAAAGGACCGGA+GGG + chr3_4:55312771-55312790 Msa0507680:intron 45.0%
TACAATGTCTCAGAGCTCTG+AGG + chr3_4:55313059-55313078 Msa0507680:exon 45.0%
ACAAGTGAACTTCTCATCCG+AGG - chr3_4:55313172-55313191 None:intergenic 45.0%
AACTCCTGCAACATGCTTCT+GGG + chr3_4:55313235-55313254 Msa0507680:CDS 45.0%
CCATCGGAACCAACTGATAA+CGG + chr3_4:55313357-55313376 Msa0507680:CDS 45.0%
! ATGAGCAGTTTGTTTGGCCT+TGG + chr3_4:55313418-55313437 Msa0507680:CDS 45.0%
!! CAGTTTGTTTGGCCTTGGAT+TGG + chr3_4:55313423-55313442 Msa0507680:CDS 45.0%
TTAGGGATGAGTATAGACGC+AGG + chr3_4:55313514-55313533 Msa0507680:CDS 45.0%
TAGGGATGAGTATAGACGCA+GGG + chr3_4:55313515-55313534 Msa0507680:CDS 45.0%
!! CACAGAGGATTGACTCGATA+TGG - chr3_4:55313549-55313568 None:intergenic 45.0%
CATATCGAGTCAATCCTCTG+TGG + chr3_4:55313547-55313566 Msa0507680:CDS 45.0%
AATCCTCTGTGGAATTTCCG+AGG + chr3_4:55313558-55313577 Msa0507680:CDS 45.0%
GCAAGTGCATTATCTAAGCC+GGG - chr3_4:55313624-55313643 None:intergenic 45.0%
GCATATGCATCAGACCATCA+CGG + chr3_4:55313654-55313673 Msa0507680:CDS 45.0%
CATATGCATCAGACCATCAC+GGG + chr3_4:55313655-55313674 Msa0507680:CDS 45.0%
ATCAGACCATCACGGGAAAA+AGG + chr3_4:55313662-55313681 Msa0507680:CDS 45.0%
ACCATCACGGGAAAAAGGAT+TGG + chr3_4:55313667-55313686 Msa0507680:CDS 45.0%
! ACCAATCCTTTTTCCCGTGA+TGG - chr3_4:55313671-55313690 None:intergenic 45.0%
GTTAATACAGAGCCGAAGTC+GGG + chr3_4:55313693-55313712 Msa0507680:CDS 45.0%
CATGCATAAAGACCCGACTT+CGG - chr3_4:55313708-55313727 None:intergenic 45.0%
GAAGTCGGGTCTTTATGCAT+GGG + chr3_4:55313707-55313726 Msa0507680:CDS 45.0%
GCTTGTTCTTCCTGAAGTTC+AGG - chr3_4:55313810-55313829 None:intergenic 45.0%
ATCAGGACTTGTGGTAGTTG+TGG + chr3_4:55314028-55314047 Msa0507680:intron 45.0%
TCAGGACTTGTGGTAGTTGT+GGG + chr3_4:55314029-55314048 Msa0507680:intron 45.0%
TGGTTATACAACTGCCAGTG+TGG + chr3_4:55314141-55314160 Msa0507680:intron 45.0%
TTATACAACTGCCAGTGTGG+TGG + chr3_4:55314144-55314163 Msa0507680:intron 45.0%
ACAATTAAGGGGGATCTGAC+AGG + chr3_4:55314198-55314217 Msa0507680:intron 45.0%
GGAAATAGCCACATACTGCT+AGG + chr3_4:55314224-55314243 Msa0507680:intron 45.0%
GCAATGATCCTAGCAGTATG+TGG - chr3_4:55314235-55314254 None:intergenic 45.0%
GTGCTAAGGATCACTTCCAA+AGG + chr3_4:55314434-55314453 Msa0507680:CDS 45.0%
CGAAAAGCTTAAGTCGCAAC+TGG + chr3_4:55314471-55314490 Msa0507680:CDS 45.0%
AGAAAAGTGAGCTTGAGTCG+CGG + chr3_4:55314500-55314519 Msa0507680:CDS 45.0%
CCAATCATAGTATGCCAGAG+GGG - chr3_4:55314624-55314643 None:intergenic 45.0%
CCCAATCATAGTATGCCAGA+GGG - chr3_4:55314625-55314644 None:intergenic 45.0%
CCCTCTGGCATACTATGATT+GGG + chr3_4:55314622-55314641 Msa0507680:intron 45.0%
TCCCAATCATAGTATGCCAG+AGG - chr3_4:55314626-55314645 None:intergenic 45.0%
AAATGGCGAACTCCAATGAG+TGG + chr3_4:55315180-55315199 Msa0507680:intron 45.0%
! TTTTCCTCCCTCCAATTTGG+GGG + chr3_4:55315337-55315356 Msa0507680:intron 45.0%
TTACTCCCATACCCCCAAAT+TGG - chr3_4:55315351-55315370 None:intergenic 45.0%
TTGCTTCAGAAGCTTGCAGA+AGG + chr3_4:55315499-55315518 Msa0507680:intron 45.0%
GAAACTGGCTGAAGATCAGA+AGG + chr3_4:55315627-55315646 Msa0507680:CDS 45.0%
! TGATCAAAAGCGTGCTTGTC+AGG + chr3_4:55315680-55315699 Msa0507680:intron 45.0%
TTGTCAGGTTCAGAGTAGCA+TGG + chr3_4:55315695-55315714 Msa0507680:intron 45.0%
TCTGCATGCGAAGATGTATC+TGG - chr3_4:55316055-55316074 None:intergenic 45.0%
TACATCTTCGCATGCAGAAG+AGG + chr3_4:55316057-55316076 Msa0507680:intron 45.0%
ACTGTCCAACGTCACTTGAA+AGG + chr3_4:55316350-55316369 Msa0507680:intron 45.0%
! GTGAACCTTTCAAGTGACGT+TGG - chr3_4:55316358-55316377 None:intergenic 45.0%
TCTGTGTTTGAAAGCTCGGA+AGG + chr3_4:55317088-55317107 Msa0507680:intron 45.0%
!! ACCAAAATGAGTGGTAGTGG+GGG + chr3_4:55317247-55317266 Msa0507680:intron 45.0%
! GGGGAGTAGGAATTAGTTTG+TGG + chr3_4:55317267-55317286 Msa0507680:intron 45.0%
AAACTGTCCTAAAGCAGTGG+GGG - chr3_4:55317796-55317815 None:intergenic 45.0%
! TGAAAAGGCATATAGTGCCG+TGG + chr3_4:55317994-55318013 Msa0507680:CDS 45.0%
GAGGTTACATATCTCCCACT+AGG - chr3_4:55318052-55318071 None:intergenic 45.0%
AGGAGAGCAACTTTGCAAGA+AGG + chr3_4:55318097-55318116 Msa0507680:CDS 45.0%
TGCTGGAAACGCAAGAAGAA+AGG + chr3_4:55318139-55318158 Msa0507680:CDS 45.0%
GGCGATGATTAGAATGAGAG+AGG + chr3_4:55318367-55318386 Msa0507680:intron 45.0%
AGAATGAGAGAGGCCTTAAG+TGG + chr3_4:55318377-55318396 Msa0507680:intron 45.0%
GAATGAGAGAGGCCTTAAGT+GGG + chr3_4:55318378-55318397 Msa0507680:intron 45.0%
!! ACTGGTTTCGGATTTTCCGA+TGG - chr3_4:55318416-55318435 None:intergenic 45.0%
ATTCCATCTCTACGGTTGTC+CGG - chr3_4:55318928-55318947 None:intergenic 45.0%
! AATAATTTGTGCATGGCGGC+TGG + chr3_4:55319224-55319243 Msa0507680:three_prime_UTR 45.0%
GAGCTGCAAACCGAAGATTA+AGG + chr3_4:55319269-55319288 Msa0507680:three_prime_UTR 45.0%
!!! TTTATGTAATTTTTAATTTT+TGG + chr3_4:55319029-55319048 Msa0507680:intron 5.0%
! GACAGGATTTAGGGCCTGTT+TGG + chr3_4:55312549-55312568 Msa0507680:intron 50.0%
!! AATGTCTCAGAGCTCTGAGG+AGG + chr3_4:55313062-55313081 Msa0507680:exon 50.0%
GAACTCCTGCAACATGCTTC+TGG + chr3_4:55313234-55313253 Msa0507680:CDS 50.0%
ACTCCTGCAACATGCTTCTG+GGG + chr3_4:55313236-55313255 Msa0507680:CDS 50.0%
! CCGTTATCAGTTGGTTCCGA+TGG - chr3_4:55313360-55313379 None:intergenic 50.0%
GGCTAGTGGTTCCAAGCTTA+GGG + chr3_4:55313497-55313516 Msa0507680:CDS 50.0%
AGGGATGAGTATAGACGCAG+GGG + chr3_4:55313516-55313535 Msa0507680:CDS 50.0%
TGACCTCGGAAATTCCACAG+AGG - chr3_4:55313564-55313583 None:intergenic 50.0%
TGGAATTTCCGAGGTCACTC+TGG + chr3_4:55313567-55313586 Msa0507680:CDS 50.0%
CGAAGTCGGGTCTTTATGCA+TGG + chr3_4:55313706-55313725 Msa0507680:CDS 50.0%
GGAAGAACAAGCTCGAAAGC+AGG + chr3_4:55313818-55313837 Msa0507680:CDS 50.0%
! TGTGGTGGTTTCTGGACCAA+TGG + chr3_4:55314159-55314178 Msa0507680:intron 50.0%
! GTGGTGGTTTCTGGACCAAT+GGG + chr3_4:55314160-55314179 Msa0507680:intron 50.0%
TGAGTCGCGGAGAATCACAT+TGG + chr3_4:55314513-55314532 Msa0507680:CDS 50.0%
GTTGCTAGAAGAGATGGAGG+AGG + chr3_4:55314573-55314592 Msa0507680:CDS 50.0%
! GATTTTTGCTCCATCCCCTC+TGG + chr3_4:55314607-55314626 Msa0507680:intron 50.0%
TCATAGTATGCCAGAGGGGA+TGG - chr3_4:55314620-55314639 None:intergenic 50.0%
CCCCTCTGGCATACTATGAT+TGG + chr3_4:55314621-55314640 Msa0507680:intron 50.0%
TCTGGAAAGAGTCGGAAGAC+TGG + chr3_4:55314881-55314900 Msa0507680:intron 50.0%
! TCCCTCCAATTTGGGGGTAT+GGG + chr3_4:55315343-55315362 Msa0507680:intron 50.0%
TCCCATACCCCCAAATTGGA+GGG - chr3_4:55315347-55315366 None:intergenic 50.0%
CTCTCTTCAGATGGCTTCTC+TGG + chr3_4:55315576-55315595 Msa0507680:CDS 50.0%
GCATATGGGTTTGAGGGAGA+AGG + chr3_4:55315914-55315933 Msa0507680:CDS 50.0%
AGAATGGGGGAACTTGACAC+TGG + chr3_4:55316557-55316576 Msa0507680:CDS 50.0%
!! CCAAAATGAGTGGTAGTGGG+GGG + chr3_4:55317248-55317267 Msa0507680:intron 50.0%
TAAAAGCAGGAGAGGAAGGG+TGG + chr3_4:55317300-55317319 Msa0507680:intron 50.0%
TCATTTCCCCCCACTGCTTT+AGG + chr3_4:55317786-55317805 Msa0507680:intron 50.0%
AACTGTCCTAAAGCAGTGGG+GGG - chr3_4:55317795-55317814 None:intergenic 50.0%
! AAAGGCATATAGTGCCGTGG+TGG + chr3_4:55317997-55318016 Msa0507680:CDS 50.0%
TGCCGTGGTGGCATCTTTAA+CGG + chr3_4:55318009-55318028 Msa0507680:CDS 50.0%
CTCCGTTAAAGATGCCACCA+CGG - chr3_4:55318014-55318033 None:intergenic 50.0%
CAAAGCCAAACCCTTTGGTG+GGG - chr3_4:55318511-55318530 None:intergenic 50.0%
CCAAAGCCAAACCCTTTGGT+GGG - chr3_4:55318512-55318531 None:intergenic 50.0%
ACCAAAGCCAAACCCTTTGG+TGG - chr3_4:55318513-55318532 None:intergenic 50.0%
GACACCAAAGCCAAACCCTT+TGG - chr3_4:55318516-55318535 None:intergenic 50.0%
TGTTGAAATTGAGCAGCGGC+CGG + chr3_4:55318906-55318925 Msa0507680:intron 50.0%
!! CTGCAACATGCTTCTGGGGT+GGG + chr3_4:55313240-55313259 Msa0507680:CDS 55.0%
CCATCTTGTGCCCTGCTAGT+GGG - chr3_4:55313465-55313484 None:intergenic 55.0%
CCACTAGCAGGGCACAAGAT+GGG + chr3_4:55313463-55313482 Msa0507680:CDS 55.0%
! CACAAGATGGGCGTGCTGTT+GGG + chr3_4:55313475-55313494 Msa0507680:CDS 55.0%
! ACAAGATGGGCGTGCTGTTG+GGG + chr3_4:55313476-55313495 Msa0507680:CDS 55.0%
! GGGCTAGTGGTTCCAAGCTT+AGG + chr3_4:55313496-55313515 Msa0507680:CDS 55.0%
GCAACTTGCAACTGGCGCTT+TGG + chr3_4:55314121-55314140 Msa0507680:intron 55.0%
ACTGCCAGTGTGGTGGTTTC+TGG + chr3_4:55314151-55314170 Msa0507680:intron 55.0%
TGGTCCAGAAACCACCACAC+TGG - chr3_4:55314158-55314177 None:intergenic 55.0%
TAAGGGGGATCTGACAGGTC+CGG + chr3_4:55314203-55314222 Msa0507680:intron 55.0%
CACAAGTGACGTGGAACGGA+TGG + chr3_4:55315122-55315141 Msa0507680:intron 55.0%
CATACCCCCAAATTGGAGGG+AGG - chr3_4:55315344-55315363 None:intergenic 55.0%
CTCCCTCCAATTTGGGGGTA+TGG + chr3_4:55315342-55315361 Msa0507680:intron 55.0%
CTCCCATACCCCCAAATTGG+AGG - chr3_4:55315348-55315367 None:intergenic 55.0%
ATGACCAGACAGCCAAGCGT+AGG + chr3_4:55317001-55317020 Msa0507680:intron 55.0%
! CCCCCCACTACCACTCATTT+TGG - chr3_4:55317251-55317270 None:intergenic 55.0%
AACCCTTTGGTGGGGTGTGA+CGG - chr3_4:55318503-55318522 None:intergenic 55.0%
TCACACCCCACCAAAGGGTT+TGG + chr3_4:55318503-55318522 Msa0507680:intron 55.0%
! CCCACCAAAGGGTTTGGCTT+TGG + chr3_4:55318509-55318528 Msa0507680:intron 55.0%
! CCACCCCAGAAGCATGTTGC+AGG - chr3_4:55313242-55313261 None:intergenic 60.0%
! CCTGCAACATGCTTCTGGGG+TGG + chr3_4:55313239-55313258 Msa0507680:CDS 60.0%
CCCACTAGCAGGGCACAAGA+TGG + chr3_4:55313462-55313481 Msa0507680:CDS 60.0%
CCCATCTTGTGCCCTGCTAG+TGG - chr3_4:55313466-55313485 None:intergenic 60.0%
GCACAAGATGGGCGTGCTGT+TGG + chr3_4:55313474-55313493 Msa0507680:CDS 60.0%
CAGTTACTGGCGCCTACGCT+TGG - chr3_4:55317016-55317035 None:intergenic 60.0%
!! TGAGTGGTAGTGGGGGGAGT+AGG + chr3_4:55317254-55317273 Msa0507680:intron 60.0%
TGCCGTCACACCCCACCAAA+GGG + chr3_4:55318498-55318517 Msa0507680:intron 60.0%
GGGCGGTACCAGAGTGACCT+CGG - chr3_4:55313578-55313597 None:intergenic 65.0%
GTGCCGTCACACCCCACCAA+AGG + chr3_4:55318497-55318516 Msa0507680:intron 65.0%
CGGCCGGACAACCGTAGAGA+TGG + chr3_4:55318922-55318941 Msa0507680:intron 65.0%
! GGGCGTGCTGTTGGGGCTAG+TGG + chr3_4:55313483-55313502 Msa0507680:CDS 70.0%
GGCGCCTACGCTTGGCTGTC+TGG - chr3_4:55317008-55317027 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 55311694 55319566 55311694 ID=Msa0507680;Name=Msa0507680
chr3_4 mRNA 55311694 55319566 55311694 ID=Msa0507680-mRNA-1;Parent=Msa0507680;Name=Msa0507680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=240|1|1|1|0.71|0.5|8|372|640
chr3_4 exon 55311694 55311906 55311694 ID=Msa0507680-mRNA-1:exon:12277;Parent=Msa0507680-mRNA-1
chr3_4 exon 55313036 55313984 55313036 ID=Msa0507680-mRNA-1:exon:12278;Parent=Msa0507680-mRNA-1
chr3_4 exon 55314413 55314594 55314413 ID=Msa0507680-mRNA-1:exon:12279;Parent=Msa0507680-mRNA-1
chr3_4 exon 55315559 55315648 55315559 ID=Msa0507680-mRNA-1:exon:12280;Parent=Msa0507680-mRNA-1
chr3_4 exon 55315750 55316037 55315750 ID=Msa0507680-mRNA-1:exon:12281;Parent=Msa0507680-mRNA-1
chr3_4 exon 55316515 55316724 55316515 ID=Msa0507680-mRNA-1:exon:12282;Parent=Msa0507680-mRNA-1
chr3_4 exon 55317941 55318173 55317941 ID=Msa0507680-mRNA-1:exon:12283;Parent=Msa0507680-mRNA-1
chr3_4 exon 55319197 55319566 55319197 ID=Msa0507680-mRNA-1:exon:12284;Parent=Msa0507680-mRNA-1
chr3_4 five_prime_UTR 55311694 55311906 55311694 ID=Msa0507680-mRNA-1:five_prime_utr;Parent=Msa0507680-mRNA-1
chr3_4 five_prime_UTR 55313036 55313062 55313036 ID=Msa0507680-mRNA-1:five_prime_utr;Parent=Msa0507680-mRNA-1
chr3_4 CDS 55313063 55313984 55313063 ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4 CDS 55314413 55314594 55314413 ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4 CDS 55315559 55315648 55315559 ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4 CDS 55315750 55316037 55315750 ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4 CDS 55316515 55316724 55316515 ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4 CDS 55317941 55318171 55317941 ID=Msa0507680-mRNA-1:cds;Parent=Msa0507680-mRNA-1
chr3_4 three_prime_UTR 55318172 55318173 55318172 ID=Msa0507680-mRNA-1:three_prime_utr;Parent=Msa0507680-mRNA-1
chr3_4 three_prime_UTR 55319197 55319566 55319197 ID=Msa0507680-mRNA-1:three_prime_utr;Parent=Msa0507680-mRNA-1
Gene Sequence

>Msa0507680

ATGTCTCAGAGCTCTGAGGAGGATACTGATATAAGTGATTCTGAGATAAGTGAGTATGAGGAAAAATGTTATGAAGAACTGAAAAGTGGAAGTCAGAATGTGAAAACCTCGGATGAGAAGTTCACTTGTCCATACTGTCCTAAGAAAAGAAAACGGGATTATTTGTACAACGAACTCCTGCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCACAGAAGAGAAAGCCAAGAGAAAAGGCTACTCATTTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATGAATATAGATACTCCATCGGAACCAACTGATAACGGTGCTGATAACGGTGACACAGACACTTCTATTGATTCTGATGAGCAGTTTGTTTGGCCTTGGATTGGAGTTATAGTTAATATTCCCACTAGCAGGGCACAAGATGGGCGTGCTGTTGGGGCTAGTGGTTCCAAGCTTAGGGATGAGTATAGACGCAGGGGTTTCAATCCATATCGAGTCAATCCTCTGTGGAATTTCCGAGGTCACTCTGGTACCGCCCTTGTAGAATTCTATAAAGACTGGCCCGGCTTAGATAATGCACTTGCATTTGAAAAAGCATATGCATCAGACCATCACGGGAAAAAGGATTGGTTTGTTAATACAGAGCCGAAGTCGGGTCTTTATGCATGGGTTGCCCGAGCTGATGACTACAAAAAGAACAATATCATTGGTGAATATCTGCGAAAGATGGGCGATATCAAAACCATACCTGAACTTCAGGAAGAACAAGCTCGAAAGCAGGATAAACTCGTGTCCAATTTGACCAACATTATTGAGGTCAAAAACAAGCACTTAATTGAGATAGAAGCAAGATGCACTGAGACTACAGCCAAAATGAATTCTGCTATGACAGAAAAAGATCAGCTCATTCAAGCTTATAATGAAGAGATAAAGAAAATACAGTCAAGTGCTAAGGATCACTTCCAAAGGATTTTTAATGATCACGAAAAGCTTAAGTCGCAACTGGAAACTCAGAAAAGTGAGCTTGAGTCGCGGAGAATCACATTGGAAAAGCGTGAAGCACATAATGAAAGTGAAAGAAGAAAGTTGCTAGAAGAGATGGAGGAGAATGCAACGAGAAATAGCTCTCTTCAGATGGCTTCTCTGGAGCAACAGAAAGCAGATATAAATGTTATGAAACTGGCTGAAGATCAGAAGAAACAAAAAGAACAGCTCCATGCTAAAATCATTCAGCTTGAAAGACAACTGGATATGAAACAAAAGCTGGAACTGGAGATTCAGCAACTAAAAGGATCACTAAGTGTGTTGAAGCACATAGAAGATGACGAAGATGTAGAAGTTTTGAAGAAGGTAGATGATTTGCATATGGGTTTGAGGGAGAAGGAACAGTCTCTTCAAGACTTAGATGCACTGAACCAAACACTAATCATCAAGGAGCGTAAGAGTAACGATGAACTGCAGGATGCTCGAAAAGAATTGATTAATGGCATTAAAGATATAGGTACTCGAGTCCATATTGGTGTGAAGAGAATGGGGGAACTTGACACTGGACCGTTCCTTGAAGCTATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGACAAAGCTTCAGAACTATGTTCATTGTGGGAAGAGTATCTAAAAGACCCAGATTGGCATCCATTCAAAGTTGTCATGATTGAAGGGAAAGAAAAGGAAATTATTAAAGATGACGATGAAAAGCTGAATGGACTGAGAAAAGAAGTGGGTGAAAAGGCATATAGTGCCGTGGTGGCATCTTTAACGGAGATTAATGAATATAATCCTAGTGGGAGATATGTAACCTCAGAGTTATGGAACTATAAAGCGGGAAGGAGAGCAACTTTGCAAGAAGGAGTGAAGTTTTTGTTGGACTGCTGGAAACGCAAGAAGAAAGGAATGTTGTGA
Protein sequence

>Msa0507680

MSQSSEEDTDISDSEISEYEEKCYEELKSGSQNVKTSDEKFTCPYCPKKRKRDYLYNELLQHASGVGQSSSQKRKPREKATHLALVKYLEKDLMNIDTPSEPTDNGADNGDTDTSIDSDEQFVWPWIGVIVNIPTSRAQDGRAVGASGSKLRDEYRRRGFNPYRVNPLWNFRGHSGTALVEFYKDWPGLDNALAFEKAYASDHHGKKDWFVNTEPKSGLYAWVARADDYKKNNIIGEYLRKMGDIKTIPELQEEQARKQDKLVSNLTNIIEVKNKHLIEIEARCTETTAKMNSAMTEKDQLIQAYNEEIKKIQSSAKDHFQRIFNDHEKLKSQLETQKSELESRRITLEKREAHNESERRKLLEEMEENATRNSSLQMASLEQQKADINVMKLAEDQKKQKEQLHAKIIQLERQLDMKQKLELEIQQLKGSLSVLKHIEDDEDVEVLKKVDDLHMGLREKEQSLQDLDALNQTLIIKERKSNDELQDARKELINGIKDIGTRVHIGVKRMGELDTGPFLEAMKKRYNEEEAEDKASELCSLWEEYLKDPDWHPFKVVMIEGKEKEIIKDDDEKLNGLRKEVGEKAYSAVVASLTEINEYNPSGRYVTSELWNYKAGRRATLQEGVKFLLDCWKRKKKGML*