AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367370 MtrunA17_Chr3g0145461 99.302 573 4 0 4 576 2 574 0.0 1186
Msa1367370 MtrunA17_Chr1g0200341 73.545 567 131 7 14 575 2 554 0.0 876
Msa1367370 MtrunA17_Chr1g0200331 68.959 567 143 6 11 575 17 552 0.0 811
Msa1367370 MtrunA17_Chr4g0038561 78.178 472 102 1 102 573 40 510 0.0 785
Msa1367370 MtrunA17_Chr8g0383361 55.354 495 215 2 80 568 132 626 0.0 585
Msa1367370 MtrunA17_Chr7g0271621 57.269 454 191 1 113 563 166 619 0.0 567
Msa1367370 MtrunA17_Chr4g0068901 56.522 460 194 2 110 563 181 640 0.0 566
Msa1367370 MtrunA17_Chr1g0192991 56.455 457 195 2 113 565 113 569 0.0 558
Msa1367370 MtrunA17_Chr3g0082721 53.939 165 76 0 302 466 2 166 2.80e-65 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367370 AT4G34860.2 79.292 565 109 5 14 575 11 570 0.0 941
Msa1367370 AT4G34860.1 79.292 565 109 5 14 575 11 570 0.0 941
Msa1367370 AT4G34860.3 79.292 565 109 5 14 575 11 570 0.0 941
Msa1367370 AT4G09510.1 73.571 560 132 4 19 575 11 557 0.0 876
Msa1367370 AT1G22650.1 72.906 561 121 7 19 575 1 534 0.0 846
Msa1367370 AT1G35580.2 71.301 561 140 5 18 574 5 548 0.0 838
Msa1367370 AT1G35580.1 71.301 561 140 5 18 574 5 548 0.0 838
Msa1367370 AT1G72000.1 77.126 494 108 3 86 575 7 499 0.0 814
Msa1367370 AT4G09510.2 73.810 462 106 3 19 477 11 460 0.0 725
Msa1367370 AT1G35580.3 71.002 469 116 4 18 482 5 457 0.0 696
Msa1367370 AT1G22650.2 71.277 470 105 6 19 484 1 444 0.0 689
Msa1367370 AT5G22510.2 51.337 561 240 5 11 565 59 592 0.0 587
Msa1367370 AT5G22510.1 51.337 561 240 5 11 565 59 592 0.0 587
Msa1367370 AT1G56560.1 51.908 524 234 5 59 565 68 590 0.0 574
Msa1367370 AT3G06500.1 53.170 489 220 3 81 563 153 638 0.0 551
Msa1367370 AT3G05820.2 55.142 457 199 3 113 563 150 606 0.0 545
Msa1367370 AT3G06500.2 54.082 392 175 1 177 563 48 439 7.30e-161 468
Msa1367370 AT3G05820.1 56.111 360 152 3 113 466 150 509 1.73e-146 432

Find 155 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGTTGATTCTGGATTT+TGG 0.107168 tig0018513:-55392 Msa1367370:CDS
CTTGATGATCCTTCACATTT+AGG 0.135844 tig0018513:-53698 Msa1367370:CDS
TTATGATTTCAGGGTGTTTA+TGG 0.137912 tig0018513:-54887 Msa1367370:intron
CATCATGGCGGATACTTTAT+TGG 0.172811 tig0018513:-54593 Msa1367370:CDS
CTCATTTCATTCATATAAAA+AGG 0.185980 tig0018513:+53188 None:intergenic
CAACTAAAGTATATATTAAA+AGG 0.216045 tig0018513:+53087 None:intergenic
CTGGTCTATTGCTGGTTATT+TGG 0.241651 tig0018513:-53735 Msa1367370:CDS
TGAACAGTCAGTTGCAATTA+TGG 0.252442 tig0018513:-54489 Msa1367370:CDS
TTTGACTTGCAATGATAAAA+AGG 0.254816 tig0018513:-53579 Msa1367370:three_prime_UTR
GAAACCTTGATAGCAGATTT+TGG 0.254882 tig0018513:-55438 Msa1367370:CDS
TGCTGAAGGGAAAGAGTTTA+TGG 0.259291 tig0018513:-54795 Msa1367370:CDS
CAGGAACAGCTTGCAGTTCT+TGG 0.261482 tig0018513:-53357 Msa1367370:three_prime_UTR
TCACGGTGGGAAGAATTAAT+TGG 0.263132 tig0018513:-54455 Msa1367370:CDS
TCATATCAAATCCCAATAAA+AGG 0.283068 tig0018513:+53135 None:intergenic
AGGGTTGCTCCTGTTGATTC+TGG 0.284587 tig0018513:-55399 Msa1367370:CDS
AATTCAAGCATTGTTCTTCA+TGG 0.292043 tig0018513:-54852 Msa1367370:CDS
CCAATAAAAGGTAAAATAGA+AGG 0.314414 tig0018513:+53147 None:intergenic
AACTCTTTCCCTTCAGCATC+TGG 0.317968 tig0018513:+54800 None:intergenic
CTCTCAATGTTCAAAGTCCT+TGG 0.321428 tig0018513:+56146 None:intergenic
ATCATATGAGAAGCCACTTT+TGG 0.334217 tig0018513:-54739 Msa1367370:CDS
ATCATGGCGGATACTTTATT+GGG 0.335197 tig0018513:-54592 Msa1367370:CDS
GAAACCAATGGTTCGTTATC+AGG 0.336858 tig0018513:-53376 Msa1367370:three_prime_UTR
AACAATGCTTGAATTTCAAT+TGG 0.347066 tig0018513:+54860 None:intergenic
AGAAAATTCTTAACAATGTC+TGG 0.354613 tig0018513:+55573 None:intergenic
TGGTGGTTACAGTTATGTTA+TGG 0.354882 tig0018513:-53913 Msa1367370:intron
TTACAATTAGATTGAAATTA+CGG 0.355244 tig0018513:-53300 Msa1367370:three_prime_UTR
TACTCCAAGATCACTGCTAT+TGG 0.358290 tig0018513:-55979 Msa1367370:CDS
CCTGAGAGCTTCCCAAGCTT+CGG 0.362174 tig0018513:+55938 None:intergenic
TTCCCGATTCTTTACCAGAT+TGG 0.363867 tig0018513:-54634 Msa1367370:CDS
TGCTCAAGAGATCAAATTCA+TGG 0.367029 tig0018513:-53634 Msa1367370:CDS
TCTGCGGCGGCTATCAAGAC+TGG 0.369898 tig0018513:-53884 Msa1367370:CDS
CTGAGAGCTTCCCAAGCTTC+GGG 0.371080 tig0018513:+55939 None:intergenic
CGCGGTTTCTGACCGGATCA+TGG 0.375080 tig0018513:+55460 None:intergenic
ACCTCACAGCAAGAAAAGTA+TGG 0.385720 tig0018513:+57217 None:intergenic
CACGGTGGGAAGAATTAATT+GGG 0.386404 tig0018513:-54454 Msa1367370:CDS
TGCCAAACCTGGTCTATTGC+TGG 0.394176 tig0018513:-53743 Msa1367370:CDS
TTCACCAAAATCTGCTATCA+AGG 0.396923 tig0018513:+55434 None:intergenic
AAAGATTGATAGGTTTCATC+TGG 0.409232 tig0018513:-55517 Msa1367370:CDS
AGGCTTATCTCCACGTCTAT+TGG 0.412169 tig0018513:-56081 Msa1367370:CDS
CCGAAGCTTGGGAAGCTCTC+AGG 0.414554 tig0018513:-55938 Msa1367370:CDS
AGTTGGAACAATTGCTGCCT+TGG 0.417688 tig0018513:-55886 Msa1367370:CDS
TGCAAGTGCTAAGATATTGC+TGG 0.418440 tig0018513:-56298 Msa1367370:five_prime_UTR
TGTGTTCCGTCATAATATTC+CGG 0.421532 tig0018513:+53797 None:intergenic
CATGAATGGAGGATCATAAC+AGG 0.421806 tig0018513:-54392 Msa1367370:CDS
AATCCAATCTGGTAAAGAAT+CGG 0.424424 tig0018513:+54631 None:intergenic
CTAGATGGAGTTACCACAAT+GGG 0.425352 tig0018513:-54352 Msa1367370:CDS
AGACTCTTCGTCTTCAATCA+TGG 0.427851 tig0018513:-55545 Msa1367370:CDS
AACCAGCAATAGACCAGGTT+TGG 0.430273 tig0018513:+53741 None:intergenic
AGACTTTGTTCCAAGTGCTC+TGG 0.430586 tig0018513:-55616 Msa1367370:CDS
TCAATGAGTGAACTATCAAT+AGG 0.444042 tig0018513:-56101 Msa1367370:CDS
TTGCTGGTTATTTGGTGGCT+AGG 0.446100 tig0018513:-53727 Msa1367370:CDS
GGAAGCTCTCAGGCGTTCCT+TGG 0.449024 tig0018513:-55928 Msa1367370:CDS
AAGGCAGCAATTGTTCCAAC+TGG 0.455491 tig0018513:+55888 None:intergenic
ATCTGGCCTCAGCAATTTGA+AGG 0.457938 tig0018513:+53837 None:intergenic
CCAACTTTACTATGTGCTGA+TGG 0.459852 tig0018513:-55243 Msa1367370:CDS
TTGTGATGAGACCAATCTAT+TGG 0.463367 tig0018513:+56254 None:intergenic
GTCTATTGCTGGTTATTTGG+TGG 0.465320 tig0018513:-53732 Msa1367370:CDS
ATGTAGTGTCGCAGAATTTG+AGG 0.466289 tig0018513:-56198 Msa1367370:CDS
TGGTCTCATCACAATGGTAA+TGG 0.469382 tig0018513:-56245 Msa1367370:CDS
CTTGACAACTTCCCTCGCCT+TGG 0.469584 tig0018513:-56050 Msa1367370:CDS
AGATTTGTGCACGGGAGAAA+AGG 0.470250 tig0018513:+56010 None:intergenic
CCATCAGCACATAGTAAAGT+TGG 0.473576 tig0018513:+55243 None:intergenic
TTGGTGAAAGTGCAATAGGC+AGG 0.474019 tig0018513:-55419 Msa1367370:CDS
CTTTATTGGGAATGTGAGTC+CGG 0.474021 tig0018513:-54579 Msa1367370:CDS
TGACCAGCCTGAATGTCAAA+AGG 0.475180 tig0018513:-55316 Msa1367370:CDS
CCAATCTATTGGAGGGGTAG+AGG 0.476513 tig0018513:+56265 None:intergenic
GAGTCCAATAGCAGTGATCT+TGG 0.477827 tig0018513:+55975 None:intergenic
CACCAAAATCCAGAATCAAC+AGG 0.478739 tig0018513:+55390 None:intergenic
CTGAGTTTATGCTTGTCAGA+GGG 0.479869 tig0018513:-55279 Msa1367370:CDS
GGAACACATGGTCGATACAT+TGG 0.481896 tig0018513:-53782 Msa1367370:CDS
AAGGTTTCGCGGTTTCTGAC+CGG 0.483631 tig0018513:+55453 None:intergenic
ATCCAATCTGGTAAAGAATC+GGG 0.484985 tig0018513:+54632 None:intergenic
GCTTCAAATCCAACCAAAAG+TGG 0.485151 tig0018513:+54726 None:intergenic
GAACAGCTTGCAGTTCTTGG+TGG 0.485168 tig0018513:-53354 Msa1367370:three_prime_UTR
TGGTCGATACATTGGGAAGC+AGG 0.486411 tig0018513:-53774 Msa1367370:CDS
GACTCTTCGTCTTCAATCAT+GGG 0.486513 tig0018513:-55544 Msa1367370:CDS
CTGTTCAGGAGTTGCCAAGC+AGG 0.494417 tig0018513:+54505 None:intergenic
CCAGATTGCTAAAAGACAAC+TGG 0.494499 tig0018513:-53820 Msa1367370:CDS
GCTTCTCATATGATAGCTTA+AGG 0.495719 tig0018513:+54748 None:intergenic
CAACTTTACTATGTGCTGAT+GGG 0.495887 tig0018513:-55242 Msa1367370:CDS
GAACACATGGTCGATACATT+GGG 0.500723 tig0018513:-53781 Msa1367370:CDS
TGAAGAAGACCGACAGCTAA+AGG 0.501224 tig0018513:-53663 Msa1367370:CDS
GTGTTTGCGTATTCCTTCAG+TGG 0.502240 tig0018513:-53476 Msa1367370:three_prime_UTR
CGGCTAGGATGGATTTCCGC+TGG 0.506123 tig0018513:-54559 Msa1367370:CDS
ATAATTGCAACTGACTGTTC+AGG 0.506227 tig0018513:+54491 None:intergenic
CCTCTACCCCTCCAATAGAT+TGG 0.506254 tig0018513:-56265 Msa1367370:CDS
GCTTGCAGTTCTTGGTGGAC+TGG 0.508414 tig0018513:-53349 Msa1367370:three_prime_UTR
TGAGAATCTTAATTATGATC+AGG 0.512681 tig0018513:-55853 Msa1367370:intron
TGTTCCTGATAACGAACCAT+TGG 0.515177 tig0018513:+53372 None:intergenic
GAATTTGATCTCTTGAGCAC+AGG 0.520613 tig0018513:+53638 None:intergenic
TGGAATACCTTAAAACTAGC+AGG 0.523302 tig0018513:+55480 None:intergenic
GAATGTGAGTCCGGCTAGGA+TGG 0.524824 tig0018513:-54570 Msa1367370:CDS
GAATATTATGACGGAACACA+TGG 0.527626 tig0018513:-53794 Msa1367370:CDS
TTTGATTTCATGCCTCATCA+TGG 0.529497 tig0018513:-54608 Msa1367370:CDS
CAGCCCTTGAAAATCATGAA+TGG 0.529947 tig0018513:-54406 Msa1367370:CDS
TAGCTTCACATTTCGTGATG+TGG 0.535028 tig0018513:+53237 None:intergenic
CTGCGGCGGCTATCAAGACT+GGG 0.535342 tig0018513:-53883 Msa1367370:CDS
GAAGTAAGAAATGTAGTGAG+TGG 0.535916 tig0018513:-53554 Msa1367370:three_prime_UTR
TCTGAGTTTATGCTTGTCAG+AGG 0.536420 tig0018513:-55280 Msa1367370:CDS
CGTGCATACACAAAATCTAC+AGG 0.544504 tig0018513:-55354 Msa1367370:CDS
AGGCTCGAAAATGCCAAACC+TGG 0.550502 tig0018513:-53754 Msa1367370:CDS
GATAGGTTTCATCTGGCAGA+AGG 0.553855 tig0018513:-55510 Msa1367370:CDS
TTAAGACCAGATTTGTGCAC+GGG 0.557462 tig0018513:+56002 None:intergenic
GCTGGATAACAAACTTTGAC+AGG 0.557935 tig0018513:+54425 None:intergenic
GCACAGGATCCTTTAGCTGT+CGG 0.560516 tig0018513:+53654 None:intergenic
ACTTATGAGCATTCCACTGA+AGG 0.564041 tig0018513:+53463 None:intergenic
TTGCTTAAGCCAGATGCTGA+AGG 0.566251 tig0018513:-54809 Msa1367370:CDS
TTGGGAATGTGAGTCCGGCT+AGG 0.569278 tig0018513:-54574 Msa1367370:CDS
AATCTGCTATCAAGGTTTCG+CGG 0.570404 tig0018513:+55442 None:intergenic
GATGAGACCAATCTATTGGA+GGG 0.575783 tig0018513:+56258 None:intergenic
GACCAGCCTGAATGTCAAAA+GGG 0.576127 tig0018513:-55315 Msa1367370:CDS
TATGCACAAGGTGAAACCAA+TGG 0.579457 tig0018513:-53388 Msa1367370:three_prime_UTR
TGATGAGACCAATCTATTGG+AGG 0.580435 tig0018513:+56257 None:intergenic
TGAGTTTATGCTTGTCAGAG+GGG 0.580700 tig0018513:-55278 Msa1367370:CDS
ATCTGGCTTAAGCAATAGCA+TGG 0.582923 tig0018513:+54817 None:intergenic
CTGTATGATTGATCGTAGAA+TGG 0.588231 tig0018513:-55217 Msa1367370:intron
ATAGGTTTCATCTGGCAGAA+GGG 0.588613 tig0018513:-55509 Msa1367370:CDS
CTAAAGTATTAGATAAGCCA+AGG 0.589167 tig0018513:-56163 Msa1367370:CDS
CAGCGGAAATCCATCCTAGC+CGG 0.590490 tig0018513:+54560 None:intergenic
GCTATAATACCTAAATGTGA+AGG 0.591073 tig0018513:+53689 None:intergenic
CAATAAAAGGTAAAATAGAA+GGG 0.591260 tig0018513:+53148 None:intergenic
TAGGTTTCATCTGGCAGAAG+GGG 0.591697 tig0018513:-55508 Msa1367370:CDS
TGCTTAAGCCAGATGCTGAA+GGG 0.597457 tig0018513:-54808 Msa1367370:CDS
CAAGATGTTCTCCAAGGCGA+GGG 0.604363 tig0018513:+56039 None:intergenic
CCCTTGAAAATCATGAATGG+AGG 0.605532 tig0018513:-54403 Msa1367370:CDS
ATAAAGTATCCGCCATGATG+AGG 0.605960 tig0018513:+54596 None:intergenic
TGGTGAAAGTGCAATAGGCA+GGG 0.613958 tig0018513:-55418 Msa1367370:CDS
TCAAGATGTTCTCCAAGGCG+AGG 0.629033 tig0018513:+56038 None:intergenic
ATTAAGACCAGATTTGTGCA+CGG 0.631492 tig0018513:+56001 None:intergenic
ATTGCAAGTCAAAATTGATG+AGG 0.632767 tig0018513:+53589 None:intergenic
GTAGTGAGTGGAAGAATGTG+TGG 0.637024 tig0018513:-53542 Msa1367370:three_prime_UTR
ATTGCTAAAAGACAACTGGC+CGG 0.640390 tig0018513:-53816 Msa1367370:CDS
ATACGCAAACACTAGACATG+TGG 0.642445 tig0018513:+53487 None:intergenic
AACTGGCCGGAATATTATGA+CGG 0.645214 tig0018513:-53803 Msa1367370:CDS
CAAATAACCAGCAATAGACC+AGG 0.645389 tig0018513:+53736 None:intergenic
GGATCTCATAGAATCACGGT+GGG 0.649862 tig0018513:-54468 Msa1367370:CDS
TAAAAGGTAAAATAGAAGGG+TGG 0.651885 tig0018513:+53151 None:intergenic
CATGATCAAGATGTTCTCCA+AGG 0.652753 tig0018513:+56033 None:intergenic
ATTCTCATCAGAATTGTCCA+AGG 0.653274 tig0018513:+55869 None:intergenic
TTATGGATCTCATAGAATCA+CGG 0.654471 tig0018513:-54472 Msa1367370:CDS
TCTGGCCTCAGCAATTTGAA+GGG 0.657188 tig0018513:+53838 None:intergenic
TGAAACAGAATGATTCATGA+CGG 0.658315 tig0018513:+53512 None:intergenic
ACGTGCCCTTCAAATTGCTG+AGG 0.658820 tig0018513:-53843 Msa1367370:CDS
GATTTCATGCCTCATCATGG+CGG 0.677929 tig0018513:-54605 Msa1367370:CDS
ACTAGATGGAGTTACCACAA+TGG 0.679491 tig0018513:-54353 Msa1367370:CDS
ATGAGACCAATCTATTGGAG+GGG 0.687920 tig0018513:+56259 None:intergenic
AAATTGCTATGCAATTACCA+AGG 0.691776 tig0018513:+54531 None:intergenic
ATAGATTGGTCTCATCACAA+TGG 0.702971 tig0018513:-56251 Msa1367370:CDS
TAGATGGAGTTACCACAATG+GGG 0.708965 tig0018513:-54351 Msa1367370:CDS
AATCACAATCACAATTCACG+AGG 0.714083 tig0018513:-57281 Msa1367370:five_prime_UTR
TGGATCTCATAGAATCACGG+TGG 0.714752 tig0018513:-54469 Msa1367370:CDS
AGATGGAGTTACCACAATGG+GGG 0.717268 tig0018513:-54350 Msa1367370:CDS
AATTACCAAGGCAAAACCAG+CGG 0.718732 tig0018513:+54543 None:intergenic
TTCACCACGAAAATGTACCA+AGG 0.730398 tig0018513:+55911 None:intergenic
ACGGTGGGAAGAATTAATTG+GGG 0.783541 tig0018513:-54453 Msa1367370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAATTTTTTTAA+TGG - tig0018513:54567-54586 Msa1367370:CDS 0.0%
!! TTTCTTATATATATAATTCT+AGG - tig0018513:53580-53599 Msa1367370:three_prime_UTR 10.0%
!! TTCTTATATATATAATTCTA+GGG - tig0018513:53581-53600 Msa1367370:three_prime_UTR 10.0%
!! TATTTATAATTTATGATTTC+AGG - tig0018513:55453-55472 Msa1367370:CDS 10.0%
!! ATTTATAATTTATGATTTCA+GGG - tig0018513:55454-55473 Msa1367370:CDS 10.0%
!!! CTTTTTTTTTTTTTTTTTTC+TGG + tig0018513:56350-56369 None:intergenic 10.0%
!! AAAGAAAGATAATTAAATCT+GGG + tig0018513:53484-53503 None:intergenic 15.0%
!! AAAAGAAAGATAATTAAATC+TGG + tig0018513:53485-53504 None:intergenic 15.0%
!! TGATATAAATTTACAAAGTT+GGG + tig0018513:55241-55260 None:intergenic 15.0%
!! ATAAAAAATGAAGTAAGAAA+TGG + tig0018513:55436-55455 None:intergenic 15.0%
!! TTACAATTAGATTGAAATTA+CGG - tig0018513:57050-57069 Msa1367370:intron 15.0%
!! ATTCATATAAAAAGGATAAA+TGG + tig0018513:57157-57176 None:intergenic 15.0%
!! CAACTAAAGTATATATTAAA+AGG + tig0018513:57266-57285 None:intergenic 15.0%
!! GTATTCTATTCTATTCTATT+AGG + tig0018513:53190-53209 None:intergenic 20.0%
!! TGAAATTGTACGAAAAAAAA+AGG + tig0018513:54538-54557 None:intergenic 20.0%
!! AATGGATGGAAAAATATAAA+AGG + tig0018513:54655-54674 None:intergenic 20.0%
!! GATATAAATTTACAAAGTTG+GGG + tig0018513:55240-55259 None:intergenic 20.0%
!! GTGATATAAATTTACAAAGT+TGG + tig0018513:55242-55261 None:intergenic 20.0%
!!! TAGCATTTGCTTTTTTAATA+TGG - tig0018513:56402-56421 Msa1367370:intron 20.0%
!!! CTTTTTTAATATGGTGATAT+TGG - tig0018513:56411-56430 Msa1367370:intron 20.0%
!! CTCATTTCATTCATATAAAA+AGG + tig0018513:57165-57184 None:intergenic 20.0%
!! CAATAAAAGGTAAAATAGAA+GGG + tig0018513:57205-57224 None:intergenic 20.0%
!!! CTTCTATTTTACCTTTTATT+GGG - tig0018513:57204-57223 Msa1367370:intron 20.0%
!!! CGAAAGCATTATGTTAATTA+TGG + tig0018513:53349-53368 None:intergenic 25.0%
!! CTCAACATCATTTCAAATTT+TGG - tig0018513:53684-53703 Msa1367370:CDS 25.0%
! TGAGAATCTTAATTATGATC+AGG - tig0018513:54497-54516 Msa1367370:CDS 25.0%
!! AATGGATTTGTACTTAACTT+TGG - tig0018513:54585-54604 Msa1367370:CDS 25.0%
! AGAAAATTCTTAACAATGTC+TGG + tig0018513:54780-54799 None:intergenic 25.0%
!!! TTGAGTTTTGATTTTTACAC+AGG + tig0018513:55277-55296 None:intergenic 25.0%
!! ATTGTTATTCTCATTCACTT+TGG + tig0018513:55331-55350 None:intergenic 25.0%
! AACAATGCTTGAATTTCAAT+TGG + tig0018513:55493-55512 None:intergenic 25.0%
! ATGAAATCAAAAATCCAATC+TGG + tig0018513:55733-55752 None:intergenic 25.0%
!!! AACTCCATCTAGTATTTTTT+GGG + tig0018513:55990-56009 None:intergenic 25.0%
!!! TAACTCCATCTAGTATTTTT+TGG + tig0018513:55991-56010 None:intergenic 25.0%
! AAACTCTATCATTTCAAACT+AGG - tig0018513:56276-56295 Msa1367370:exon 25.0%
!! TAATATGGTGATATTGGTTA+TGG - tig0018513:56417-56436 Msa1367370:intron 25.0%
!!! TTTGACTTGCAATGATAAAA+AGG - tig0018513:56771-56790 Msa1367370:intron 25.0%
! CATATAAAAAGGATAAATGG+AGG + tig0018513:57154-57173 None:intergenic 25.0%
! CCAATAAAAGGTAAAATAGA+AGG + tig0018513:57206-57225 None:intergenic 25.0%
!! CCTTCTATTTTACCTTTTAT+TGG - tig0018513:57203-57222 Msa1367370:intron 25.0%
! TCATATCAAATCCCAATAAA+AGG + tig0018513:57218-57237 None:intergenic 25.0%
! TAATTCTAGGGATCTTGAAT+TGG - tig0018513:53593-53612 Msa1367370:three_prime_UTR 30.0%
! TCGTGTTCTTAATCATTTTG+TGG - tig0018513:53632-53651 Msa1367370:CDS 30.0%
AATTAGTTGTGTATCCTAGA+AGG - tig0018513:53959-53978 Msa1367370:intron 30.0%
ATTAGTTGTGTATCCTAGAA+GGG - tig0018513:53960-53979 Msa1367370:intron 30.0%
! CTAAAGTATTAGATAAGCCA+AGG - tig0018513:54187-54206 Msa1367370:intron 30.0%
TCAATGAGTGAACTATCAAT+AGG - tig0018513:54249-54268 Msa1367370:intron 30.0%
CAAGTATAATTCCCCATATT+AGG + tig0018513:54696-54715 None:intergenic 30.0%
AAAGTCTCTAACAAAAACCT+AGG + tig0018513:54721-54740 None:intergenic 30.0%
CATGGGAAAAAAAGATTGAT+AGG - tig0018513:54823-54842 Msa1367370:CDS 30.0%
AAAGATTGATAGGTTTCATC+TGG - tig0018513:54833-54852 Msa1367370:CDS 30.0%
!!! TTTTAAGGTATTCCATGATC+CGG - tig0018513:54878-54897 Msa1367370:CDS 30.0%
TTTATTCATAATCTACTGCC+TGG - tig0018513:55170-55189 Msa1367370:intron 30.0%
!! ATCATCAATGCTTATTTTCC+AGG + tig0018513:55191-55210 None:intergenic 30.0%
!! GGAAAATAAGCATTGATGAT+AGG - tig0018513:55191-55210 Msa1367370:intron 30.0%
ATTCTAGATATGCTACTACT+AGG - tig0018513:55362-55381 Msa1367370:CDS 30.0%
AAATGGATAGATTAACGACT+AGG + tig0018513:55419-55438 None:intergenic 30.0%
! TTATGATTTCAGGGTGTTTA+TGG - tig0018513:55463-55482 Msa1367370:CDS 30.0%
! AATTCAAGCATTGTTCTTCA+TGG - tig0018513:55498-55517 Msa1367370:CDS 30.0%
AATCCAATCTGGTAAAGAAT+CGG + tig0018513:55722-55741 None:intergenic 30.0%
AAATTGCTATGCAATTACCA+AGG + tig0018513:55822-55841 None:intergenic 30.0%
TTATGGATCTCATAGAATCA+CGG - tig0018513:55878-55897 Msa1367370:CDS 30.0%
TCATCATTAAACAAATGCAG+TGG - tig0018513:56118-56137 Msa1367370:CDS 30.0%
! TATGTTATGGTTTTTGTCTG+CGG - tig0018513:56450-56469 Msa1367370:intron 30.0%
GCTATAATACCTAAATGTGA+AGG + tig0018513:56664-56683 None:intergenic 30.0%
ATTGCAAGTCAAAATTGATG+AGG + tig0018513:56764-56783 None:intergenic 30.0%
TGAAACAGAATGATTCATGA+CGG + tig0018513:56841-56860 None:intergenic 30.0%
!! GAAAAGTTGTTTTATGCACA+AGG - tig0018513:56950-56969 Msa1367370:intron 30.0%
! TAGATTGTGTTTTCTTGAAC+TGG - tig0018513:57085-57104 Msa1367370:intron 30.0%
TAAAAGGTAAAATAGAAGGG+TGG + tig0018513:57202-57221 None:intergenic 30.0%
!!! TCACTAGCATCTATTTTTTC+TGG - tig0018513:57239-57258 Msa1367370:five_prime_UTR 30.0%
AATCACAATCACAATTCACG+AGG - tig0018513:53069-53088 Msa1367370:three_prime_UTR 35.0%
TATGAATATGAACGTCGTGA+TGG + tig0018513:53243-53262 None:intergenic 35.0%
! TCTCTCATGCTTTCTTGTTT+CGG - tig0018513:53296-53315 Msa1367370:three_prime_UTR 35.0%
! CATTGACGTAACGTATTTTG+AGG - tig0018513:53420-53439 Msa1367370:three_prime_UTR 35.0%
AGGAAAGAAAAAGATGTGCA+TGG + tig0018513:53448-53467 None:intergenic 35.0%
ATACAAAGTCTCACTAAACC+AGG - tig0018513:53756-53775 Msa1367370:CDS 35.0%
AATTAACCACTTCATTGCCA+TGG - tig0018513:53779-53798 Msa1367370:CDS 35.0%
GATAAGCTCAAATAAGTCCA+TGG + tig0018513:53799-53818 None:intergenic 35.0%
ATTACCAATATGACCCTTCT+AGG + tig0018513:53976-53995 None:intergenic 35.0%
TTGTGATGAGACCAATCTAT+TGG + tig0018513:54099-54118 None:intergenic 35.0%
!! ATAGATTGGTCTCATCACAA+TGG - tig0018513:54099-54118 Msa1367370:intron 35.0%
ATTAAGACCAGATTTGTGCA+CGG + tig0018513:54352-54371 None:intergenic 35.0%
ATTCTCATCAGAATTGTCCA+AGG + tig0018513:54484-54503 None:intergenic 35.0%
!! TAACTTTGGAGTCCCTAATA+TGG - tig0018513:54599-54618 Msa1367370:CDS 35.0%
CATAGGAAACTCAAAATGGA+TGG + tig0018513:54669-54688 None:intergenic 35.0%
!!! CATCCATTTTGAGTTTCCTA+TGG - tig0018513:54667-54686 Msa1367370:CDS 35.0%
TGGAATACCTTAAAACTAGC+AGG + tig0018513:54873-54892 None:intergenic 35.0%
!! GAAACCTTGATAGCAGATTT+TGG - tig0018513:54912-54931 Msa1367370:intron 35.0%
TTCACCAAAATCTGCTATCA+AGG + tig0018513:54919-54938 None:intergenic 35.0%
!! GATTTTGGTGAAAGTGCAAT+AGG - tig0018513:54927-54946 Msa1367370:intron 35.0%
! CAACTTTACTATGTGCTGAT+GGG - tig0018513:55108-55127 Msa1367370:intron 35.0%
CTGTATGATTGATCGTAGAA+TGG - tig0018513:55133-55152 Msa1367370:intron 35.0%
GCTTCTCATATGATAGCTTA+AGG + tig0018513:55605-55624 None:intergenic 35.0%
!! ATCATATGAGAAGCCACTTT+TGG - tig0018513:55611-55630 Msa1367370:CDS 35.0%
ATCCAATCTGGTAAAGAATC+GGG + tig0018513:55721-55740 None:intergenic 35.0%
! TTTGATTTCATGCCTCATCA+TGG - tig0018513:55742-55761 Msa1367370:intron 35.0%
!! ATCATGGCGGATACTTTATT+GGG - tig0018513:55758-55777 Msa1367370:intron 35.0%
ATAATTGCAACTGACTGTTC+AGG + tig0018513:55862-55881 None:intergenic 35.0%
TGAACAGTCAGTTGCAATTA+TGG - tig0018513:55861-55880 Msa1367370:CDS 35.0%
! CCTCCATTCATGATTTTCAA+GGG + tig0018513:55950-55969 None:intergenic 35.0%
! TCCTCCATTCATGATTTTCA+AGG + tig0018513:55951-55970 None:intergenic 35.0%
GTGACCCAAAAAATACTAGA+TGG - tig0018513:55983-56002 Msa1367370:CDS 35.0%
TTGTTCTGCGAAATTCAGAA+TGG + tig0018513:56051-56070 None:intergenic 35.0%
AACAAATGCAGTGGAAACAT+AGG - tig0018513:56127-56146 Msa1367370:CDS 35.0%
! TATGGTGATATTGGTTATGG+TGG - tig0018513:56420-56439 Msa1367370:intron 35.0%
TGGTGGTTACAGTTATGTTA+TGG - tig0018513:56437-56456 Msa1367370:intron 35.0%
TGTGTTCCGTCATAATATTC+CGG + tig0018513:56556-56575 None:intergenic 35.0%
! GAATATTATGACGGAACACA+TGG - tig0018513:56556-56575 Msa1367370:intron 35.0%
! CTTGATGATCCTTCACATTT+AGG - tig0018513:56652-56671 Msa1367370:intron 35.0%
TGCTCAAGAGATCAAATTCA+TGG - tig0018513:56716-56735 Msa1367370:intron 35.0%
GAAGTAAGAAATGTAGTGAG+TGG - tig0018513:56796-56815 Msa1367370:intron 35.0%
!! TCCATACTTTTCTTGCTGTG+AGG - tig0018513:53132-53151 Msa1367370:three_prime_UTR 40.0%
ACCTCACAGCAAGAAAAGTA+TGG + tig0018513:53136-53155 None:intergenic 40.0%
ATCTGGGAAGCAGCAATTAA+AGG + tig0018513:53468-53487 None:intergenic 40.0%
TGAAGCACATACGTACATAC+AGG + tig0018513:53660-53679 None:intergenic 40.0%
GCAATGAAGTGGTTAATTCC+TGG + tig0018513:53777-53796 None:intergenic 40.0%
ATAAGTCCATGGCAATGAAG+TGG + tig0018513:53788-53807 None:intergenic 40.0%
GTATCCTAGAAGGGTCATAT+TGG - tig0018513:53969-53988 Msa1367370:intron 40.0%
CTTTAAATAACCCTGTCTGC+AGG - tig0018513:54012-54031 Msa1367370:intron 40.0%
TGCAAGTGCTAAGATATTGC+TGG - tig0018513:54052-54071 Msa1367370:intron 40.0%
ATGAGACCAATCTATTGGAG+GGG + tig0018513:54094-54113 None:intergenic 40.0%
GATGAGACCAATCTATTGGA+GGG + tig0018513:54095-54114 None:intergenic 40.0%
TGATGAGACCAATCTATTGG+AGG + tig0018513:54096-54115 None:intergenic 40.0%
TGGTCTCATCACAATGGTAA+TGG - tig0018513:54105-54124 Msa1367370:intron 40.0%
ATGTAGTGTCGCAGAATTTG+AGG - tig0018513:54152-54171 Msa1367370:intron 40.0%
CTCTCAATGTTCAAAGTCCT+TGG + tig0018513:54207-54226 None:intergenic 40.0%
! AGGGAAGTTGTCAAGTTTTG+AGG + tig0018513:54295-54314 None:intergenic 40.0%
CATGATCAAGATGTTCTCCA+AGG + tig0018513:54320-54339 None:intergenic 40.0%
TTAAGACCAGATTTGTGCAC+GGG + tig0018513:54351-54370 None:intergenic 40.0%
TACTCCAAGATCACTGCTAT+TGG - tig0018513:54371-54390 Msa1367370:CDS 40.0%
! ATTCAATTTTGCCCGAAGCT+TGG - tig0018513:54400-54419 Msa1367370:CDS 40.0%
! TTCAATTTTGCCCGAAGCTT+GGG - tig0018513:54401-54420 Msa1367370:CDS 40.0%
TTCACCACGAAAATGTACCA+AGG + tig0018513:54442-54461 None:intergenic 40.0%
GCATGACAAGGTCCATATTA+GGG + tig0018513:54614-54633 None:intergenic 40.0%
AGCATGACAAGGTCCATATT+AGG + tig0018513:54615-54634 None:intergenic 40.0%
TAATATGGACCTTGTCATGC+TGG - tig0018513:54614-54633 Msa1367370:CDS 40.0%
CCTCCATAGGAAACTCAAAA+TGG + tig0018513:54673-54692 None:intergenic 40.0%
!!! CCATTTTGAGTTTCCTATGG+AGG - tig0018513:54670-54689 Msa1367370:CDS 40.0%
TTTCCTATGGAGGCCTAATA+TGG - tig0018513:54680-54699 Msa1367370:CDS 40.0%
TTCCTATGGAGGCCTAATAT+GGG - tig0018513:54681-54700 Msa1367370:CDS 40.0%
! ATCAAAAAAGCCAGAGCACT+TGG + tig0018513:54747-54766 None:intergenic 40.0%
!!! CTCTGGCTTTTTTGATGCAT+GGG - tig0018513:54751-54770 Msa1367370:CDS 40.0%
!!! TCTGGCTTTTTTGATGCATG+GGG - tig0018513:54752-54771 Msa1367370:CDS 40.0%
AGACTCTTCGTCTTCAATCA+TGG - tig0018513:54805-54824 Msa1367370:CDS 40.0%
GACTCTTCGTCTTCAATCAT+GGG - tig0018513:54806-54825 Msa1367370:CDS 40.0%
ATAGGTTTCATCTGGCAGAA+GGG - tig0018513:54841-54860 Msa1367370:CDS 40.0%
AATCTGCTATCAAGGTTTCG+CGG + tig0018513:54911-54930 None:intergenic 40.0%
!!! CTCCTGTTGATTCTGGATTT+TGG - tig0018513:54958-54977 Msa1367370:intron 40.0%
CACCAAAATCCAGAATCAAC+AGG + tig0018513:54963-54982 None:intergenic 40.0%
!!! CTGTTGATTCTGGATTTTGG+TGG - tig0018513:54961-54980 Msa1367370:intron 40.0%
CGTGCATACACAAAATCTAC+AGG - tig0018513:54996-55015 Msa1367370:intron 40.0%
TCTGAGTTTATGCTTGTCAG+AGG - tig0018513:55070-55089 Msa1367370:intron 40.0%
CTGAGTTTATGCTTGTCAGA+GGG - tig0018513:55071-55090 Msa1367370:intron 40.0%
TGAGTTTATGCTTGTCAGAG+GGG - tig0018513:55072-55091 Msa1367370:intron 40.0%
CCATCAGCACATAGTAAAGT+TGG + tig0018513:55110-55129 None:intergenic 40.0%
CCAACTTTACTATGTGCTGA+TGG - tig0018513:55107-55126 Msa1367370:intron 40.0%
! ATCTGGCTTAAGCAATAGCA+TGG + tig0018513:55536-55555 None:intergenic 40.0%
TGCTGAAGGGAAAGAGTTTA+TGG - tig0018513:55555-55574 Msa1367370:CDS 40.0%
!!! TATGAGAAGCCACTTTTGGT+TGG - tig0018513:55615-55634 Msa1367370:CDS 40.0%
GCTTCAAATCCAACCAAAAG+TGG + tig0018513:55627-55646 None:intergenic 40.0%
TTCCCGATTCTTTACCAGAT+TGG - tig0018513:55716-55735 Msa1367370:intron 40.0%
! ATAAAGTATCCGCCATGATG+AGG + tig0018513:55757-55776 None:intergenic 40.0%
!! CATCATGGCGGATACTTTAT+TGG - tig0018513:55757-55776 Msa1367370:intron 40.0%
CTTTATTGGGAATGTGAGTC+CGG - tig0018513:55771-55790 Msa1367370:intron 40.0%
AATTACCAAGGCAAAACCAG+CGG + tig0018513:55810-55829 None:intergenic 40.0%
! CATAGCAATTTTGTCCTGCT+TGG - tig0018513:55831-55850 Msa1367370:intron 40.0%
TCACGGTGGGAAGAATTAAT+TGG - tig0018513:55895-55914 Msa1367370:CDS 40.0%
CACGGTGGGAAGAATTAATT+GGG - tig0018513:55896-55915 Msa1367370:CDS 40.0%
ACGGTGGGAAGAATTAATTG+GGG - tig0018513:55897-55916 Msa1367370:CDS 40.0%
GCTGGATAACAAACTTTGAC+AGG + tig0018513:55928-55947 None:intergenic 40.0%
!! CATTCATGATTTTCAAGGGC+TGG + tig0018513:55946-55965 None:intergenic 40.0%
CAGCCCTTGAAAATCATGAA+TGG - tig0018513:55944-55963 Msa1367370:CDS 40.0%
CCCTTGAAAATCATGAATGG+AGG - tig0018513:55947-55966 Msa1367370:CDS 40.0%
CATGAATGGAGGATCATAAC+AGG - tig0018513:55958-55977 Msa1367370:CDS 40.0%
ACTAGATGGAGTTACCACAA+TGG - tig0018513:55997-56016 Msa1367370:CDS 40.0%
CTAGATGGAGTTACCACAAT+GGG - tig0018513:55998-56017 Msa1367370:CDS 40.0%
TAGATGGAGTTACCACAATG+GGG - tig0018513:55999-56018 Msa1367370:CDS 40.0%
!! AATGGTAGCATAAGAGTACC+TGG + tig0018513:56033-56052 None:intergenic 40.0%
! TGTGTGTGTACGACTTTTGA+GGG - tig0018513:56080-56099 Msa1367370:CDS 40.0%
TATTAGCCAGTCTCCAAACA+AGG - tig0018513:56312-56331 Msa1367370:five_prime_UTR 40.0%
ATTAGCCAGTCTCCAAACAA+GGG - tig0018513:56313-56332 Msa1367370:five_prime_UTR 40.0%
!! AAGGGCACGTTTTGCAATTT+GGG + tig0018513:56497-56516 None:intergenic 40.0%
! CCAGTTGTCTTTTAGCAATC+TGG + tig0018513:56533-56552 None:intergenic 40.0%
CCAGATTGCTAAAAGACAAC+TGG - tig0018513:56530-56549 Msa1367370:intron 40.0%
ATTGCTAAAAGACAACTGGC+CGG - tig0018513:56534-56553 Msa1367370:intron 40.0%
AACTGGCCGGAATATTATGA+CGG - tig0018513:56547-56566 Msa1367370:intron 40.0%
GAACACATGGTCGATACATT+GGG - tig0018513:56569-56588 Msa1367370:intron 40.0%
CAAATAACCAGCAATAGACC+AGG + tig0018513:56617-56636 None:intergenic 40.0%
! CTGGTCTATTGCTGGTTATT+TGG - tig0018513:56615-56634 Msa1367370:intron 40.0%
! GTCTATTGCTGGTTATTTGG+TGG - tig0018513:56618-56637 Msa1367370:intron 40.0%
GAATTTGATCTCTTGAGCAC+AGG + tig0018513:56715-56734 None:intergenic 40.0%
ATACGCAAACACTAGACATG+TGG + tig0018513:56866-56885 None:intergenic 40.0%
ACTTATGAGCATTCCACTGA+AGG + tig0018513:56890-56909 None:intergenic 40.0%
! CTGTGTTCTGTAGAGTTTTC+AGG - tig0018513:56917-56936 Msa1367370:intron 40.0%
!! AGAGTTTTCAGGATCGTCAA+TGG - tig0018513:56928-56947 Msa1367370:intron 40.0%
TATGCACAAGGTGAAACCAA+TGG - tig0018513:56962-56981 Msa1367370:intron 40.0%
GAAACCAATGGTTCGTTATC+AGG - tig0018513:56974-56993 Msa1367370:intron 40.0%
! TGTTCCTGATAACGAACCAT+TGG + tig0018513:56981-57000 None:intergenic 40.0%
TAGCTTCACATTTCGTGATG+TGG + tig0018513:57116-57135 None:intergenic 40.0%
TCCTCAAAATCCTGCAGACA+GGG + tig0018513:54025-54044 None:intergenic 45.0%
AGGCTTATCTCCACGTCTAT+TGG - tig0018513:54269-54288 Msa1367370:intron 45.0%
!!! AGTTTTGAGGCCAATAGACG+TGG + tig0018513:54282-54301 None:intergenic 45.0%
AGATTTGTGCACGGGAGAAA+AGG + tig0018513:54343-54362 None:intergenic 45.0%
! TTTTCTCCCGTGCACAAATC+TGG - tig0018513:54342-54361 Msa1367370:CDS 45.0%
GAGTCCAATAGCAGTGATCT+TGG + tig0018513:54378-54397 None:intergenic 45.0%
! CGTTCCTTGGTACATTTTCG+TGG - tig0018513:54435-54454 Msa1367370:CDS 45.0%
! CATTTTCGTGGTGAACCAGT+TGG - tig0018513:54447-54466 Msa1367370:CDS 45.0%
AAGGCAGCAATTGTTCCAAC+TGG + tig0018513:54465-54484 None:intergenic 45.0%
AGTTGGAACAATTGCTGCCT+TGG - tig0018513:54464-54483 Msa1367370:CDS 45.0%
TCCTATGGAGGCCTAATATG+GGG - tig0018513:54682-54701 Msa1367370:CDS 45.0%
GGGGAATTATACTTGTGCCT+AGG - tig0018513:54701-54720 Msa1367370:CDS 45.0%
AGACTTTGTTCCAAGTGCTC+TGG - tig0018513:54734-54753 Msa1367370:CDS 45.0%
!!! GCTCTGGCTTTTTTGATGCA+TGG - tig0018513:54750-54769 Msa1367370:CDS 45.0%
GATAGGTTTCATCTGGCAGA+AGG - tig0018513:54840-54859 Msa1367370:CDS 45.0%
TAGGTTTCATCTGGCAGAAG+GGG - tig0018513:54842-54861 Msa1367370:CDS 45.0%
!!! GGTGATGCCTGCTAGTTTTA+AGG - tig0018513:54863-54882 Msa1367370:CDS 45.0%
! TTGGTGAAAGTGCAATAGGC+AGG - tig0018513:54931-54950 Msa1367370:intron 45.0%
! TGGTGAAAGTGCAATAGGCA+GGG - tig0018513:54932-54951 Msa1367370:intron 45.0%
TGACCAGCCTGAATGTCAAA+AGG - tig0018513:55034-55053 Msa1367370:intron 45.0%
GACCAGCCTGAATGTCAAAA+GGG - tig0018513:55035-55054 Msa1367370:intron 45.0%
! TACCCTTTTGACATTCAGGC+TGG + tig0018513:55040-55059 None:intergenic 45.0%
! CGCATACCCTTTTGACATTC+AGG + tig0018513:55044-55063 None:intergenic 45.0%
TTGCTTAAGCCAGATGCTGA+AGG - tig0018513:55541-55560 Msa1367370:CDS 45.0%
TGCTTAAGCCAGATGCTGAA+GGG - tig0018513:55542-55561 Msa1367370:CDS 45.0%
AACTCTTTCCCTTCAGCATC+TGG + tig0018513:55553-55572 None:intergenic 45.0%
GATTTCATGCCTCATCATGG+CGG - tig0018513:55745-55764 Msa1367370:intron 45.0%
TGGATCTCATAGAATCACGG+TGG - tig0018513:55881-55900 Msa1367370:CDS 45.0%
GGATCTCATAGAATCACGGT+GGG - tig0018513:55882-55901 Msa1367370:CDS 45.0%
AGATGGAGTTACCACAATGG+GGG - tig0018513:56000-56019 Msa1367370:CDS 45.0%
! GTGTGTGTGTACGACTTTTG+AGG - tig0018513:56079-56098 Msa1367370:CDS 45.0%
GACTAAATCACGATGACACG+TGG + tig0018513:56256-56275 None:intergenic 45.0%
GCATTAGCATAGCCCTTGTT+TGG + tig0018513:56328-56347 None:intergenic 45.0%
! GTTATGGTTTTTGTCTGCGG+CGG - tig0018513:56453-56472 Msa1367370:intron 45.0%
! AGGGCACGTTTTGCAATTTG+GGG + tig0018513:56496-56515 None:intergenic 45.0%
!! GAAGGGCACGTTTTGCAATT+TGG + tig0018513:56498-56517 None:intergenic 45.0%
TCTGGCCTCAGCAATTTGAA+GGG + tig0018513:56515-56534 None:intergenic 45.0%
ATCTGGCCTCAGCAATTTGA+AGG + tig0018513:56516-56535 None:intergenic 45.0%
GGAACACATGGTCGATACAT+TGG - tig0018513:56568-56587 Msa1367370:intron 45.0%
AACCAGCAATAGACCAGGTT+TGG + tig0018513:56612-56631 None:intergenic 45.0%
! TTGCTGGTTATTTGGTGGCT+AGG - tig0018513:56623-56642 Msa1367370:intron 45.0%
TGAAGAAGACCGACAGCTAA+AGG - tig0018513:56687-56706 Msa1367370:intron 45.0%
GTAGTGAGTGGAAGAATGTG+TGG - tig0018513:56808-56827 Msa1367370:intron 45.0%
GTGTTTGCGTATTCCTTCAG+TGG - tig0018513:56874-56893 Msa1367370:intron 45.0%
! CGTCGTGATGGAAATGCGAA+GGG + tig0018513:53231-53250 None:intergenic 50.0%
! ACGTCGTGATGGAAATGCGA+AGG + tig0018513:53232-53251 None:intergenic 50.0%
! ACCCTGTCTGCAGGATTTTG+AGG - tig0018513:54021-54040 Msa1367370:intron 50.0%
GTCCTCAAAATCCTGCAGAC+AGG + tig0018513:54026-54045 None:intergenic 50.0%
CCAATCTATTGGAGGGGTAG+AGG + tig0018513:54088-54107 None:intergenic 50.0%
CCTCTACCCCTCCAATAGAT+TGG - tig0018513:54085-54104 Msa1367370:intron 50.0%
CAAGATGTTCTCCAAGGCGA+GGG + tig0018513:54314-54333 None:intergenic 50.0%
TCAAGATGTTCTCCAAGGCG+AGG + tig0018513:54315-54334 None:intergenic 50.0%
ACCTTGTCATGCTGGATCAG+TGG - tig0018513:54622-54641 Msa1367370:CDS 50.0%
ACCACTGATCCAGCATGACA+AGG + tig0018513:54626-54645 None:intergenic 50.0%
TCCCCATATTAGGCCTCCAT+AGG + tig0018513:54686-54705 None:intergenic 50.0%
AAGGTTTCGCGGTTTCTGAC+CGG + tig0018513:54900-54919 None:intergenic 50.0%
!! AGGGTTGCTCCTGTTGATTC+TGG - tig0018513:54951-54970 Msa1367370:intron 50.0%
!! TGCTACTACTAGGCACTGAC+AGG - tig0018513:55372-55391 Msa1367370:CDS 50.0%
!! GCTACTACTAGGCACTGACA+GGG - tig0018513:55373-55392 Msa1367370:CDS 50.0%
!! CTACTACTAGGCACTGACAG+GGG - tig0018513:55374-55393 Msa1367370:CDS 50.0%
!!! GATTTCCGCTGGTTTTGCCT+TGG - tig0018513:55802-55821 Msa1367370:intron 50.0%
GTTACCACAATGGGGGATCT+TGG - tig0018513:56007-56026 Msa1367370:CDS 50.0%
! CATAGCCCTTGTTTGGAGAC+TGG + tig0018513:56321-56340 None:intergenic 50.0%
ACGTGCCCTTCAAATTGCTG+AGG - tig0018513:56507-56526 Msa1367370:intron 50.0%
TGGTCGATACATTGGGAAGC+AGG - tig0018513:56576-56595 Msa1367370:intron 50.0%
AGGCTCGAAAATGCCAAACC+TGG - tig0018513:56596-56615 Msa1367370:intron 50.0%
TGCCAAACCTGGTCTATTGC+TGG - tig0018513:56607-56626 Msa1367370:intron 50.0%
GCACAGGATCCTTTAGCTGT+CGG + tig0018513:56699-56718 None:intergenic 50.0%
CAGGAACAGCTTGCAGTTCT+TGG - tig0018513:56993-57012 Msa1367370:intron 50.0%
GAACAGCTTGCAGTTCTTGG+TGG - tig0018513:56996-57015 Msa1367370:intron 50.0%
CTTGACAACTTCCCTCGCCT+TGG - tig0018513:54300-54319 Msa1367370:intron 55.0%
CTGAGAGCTTCCCAAGCTTC+GGG + tig0018513:54414-54433 None:intergenic 55.0%
CCTGAGAGCTTCCCAAGCTT+CGG + tig0018513:54415-54434 None:intergenic 55.0%
TTGGGAATGTGAGTCCGGCT+AGG - tig0018513:55776-55795 Msa1367370:intron 55.0%
GAATGTGAGTCCGGCTAGGA+TGG - tig0018513:55780-55799 Msa1367370:intron 55.0%
CAGCGGAAATCCATCCTAGC+CGG + tig0018513:55793-55812 None:intergenic 55.0%
CTGTTCAGGAGTTGCCAAGC+AGG + tig0018513:55848-55867 None:intergenic 55.0%
! GCTTGCAGTTCTTGGTGGAC+TGG - tig0018513:57001-57020 Msa1367370:intron 55.0%
CCGAAGCTTGGGAAGCTCTC+AGG - tig0018513:54412-54431 Msa1367370:CDS 60.0%
GGAAGCTCTCAGGCGTTCCT+TGG - tig0018513:54422-54441 Msa1367370:CDS 60.0%
CGCGGTTTCTGACCGGATCA+TGG + tig0018513:54893-54912 None:intergenic 60.0%
! CGGCTAGGATGGATTTCCGC+TGG - tig0018513:55791-55810 Msa1367370:intron 60.0%
CTGGCCAAGATCCCCCATTG+TGG + tig0018513:56014-56033 None:intergenic 60.0%
CACAATGGGGGATCTTGGCC+AGG - tig0018513:56012-56031 Msa1367370:CDS 60.0%
TCTGCGGCGGCTATCAAGAC+TGG - tig0018513:56466-56485 Msa1367370:intron 60.0%
CTGCGGCGGCTATCAAGACT+GGG - tig0018513:56467-56486 Msa1367370:intron 60.0%
Chromosome Type Strat End Strand Name
tig0018513 gene 53069 57303 53069 ID=Msa1367370;Name=Msa1367370
tig0018513 mRNA 53069 57303 53069 ID=Msa1367370-mRNA-1;Parent=Msa1367370;Name=Msa1367370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129|1|1|1|0.75|0.6|5|556|576
tig0018513 exon 53069 53923 53069 ID=Msa1367370-mRNA-1:exon:15525;Parent=Msa1367370-mRNA-1
tig0018513 exon 54339 54897 54339 ID=Msa1367370-mRNA-1:exon:15524;Parent=Msa1367370-mRNA-1
tig0018513 exon 55218 55649 55218 ID=Msa1367370-mRNA-1:exon:15523;Parent=Msa1367370-mRNA-1
tig0018513 exon 55854 56338 55854 ID=Msa1367370-mRNA-1:exon:15522;Parent=Msa1367370-mRNA-1
tig0018513 exon 57219 57303 57219 ID=Msa1367370-mRNA-1:exon:15521;Parent=Msa1367370-mRNA-1
tig0018513 five_prime_UTR 57219 57303 57219 ID=Msa1367370-mRNA-1:five_prime_utr;Parent=Msa1367370-mRNA-1
tig0018513 five_prime_UTR 56295 56338 56295 ID=Msa1367370-mRNA-1:five_prime_utr;Parent=Msa1367370-mRNA-1
tig0018513 CDS 55854 56294 55854 ID=Msa1367370-mRNA-1:cds;Parent=Msa1367370-mRNA-1
tig0018513 CDS 55218 55649 55218 ID=Msa1367370-mRNA-1:cds;Parent=Msa1367370-mRNA-1
tig0018513 CDS 54339 54897 54339 ID=Msa1367370-mRNA-1:cds;Parent=Msa1367370-mRNA-1
tig0018513 CDS 53625 53923 53625 ID=Msa1367370-mRNA-1:cds;Parent=Msa1367370-mRNA-1
tig0018513 three_prime_UTR 53069 53624 53069 ID=Msa1367370-mRNA-1:three_prime_utr;Parent=Msa1367370-mRNA-1
Gene Sequence

>Msa1367370

ATGTCTACCTCTACCCCTCCAATAGATTGGTCTCATCACAATGGTAATGGAAATTTGAAAAGTCAAGACTCGCTATGTAGTGTCGCAGAATTTGAGGAATTTGATTTCTCTAAAGTATTAGATAAGCCAAGGACTTTGAACATTGAGAGACAAAGATCATGTGATGAAAGATCAATGAGTGAACTATCAATAGGCTTATCTCCACGTCTATTGGCCTCAAAACTTGACAACTTCCCTCGCCTTGGAGAACATCTTGATCATGCCTTTTCTCCCGTGCACAAATCTGGTCTTAATACTCCAAGATCACTGCTATTGGACTCTCATTCAATTTTGCCCGAAGCTTGGGAAGCTCTCAGGCGTTCCTTGGTACATTTTCGTGGTGAACCAGTTGGAACAATTGCTGCCTTGGACAATTCTGATGAGAATCTTAATTATGATCAGGTTTTTGTTAGAGACTTTGTTCCAAGTGCTCTGGCTTTTTTGATGCATGGGGAACCAGACATTGTTAAGAATTTTCTCTTGAAGACTCTTCGTCTTCAATCATGGGAAAAAAAGATTGATAGGTTTCATCTGGCAGAAGGGGTGATGCCTGCTAGTTTTAAGGTATTCCATGATCCGGTCAGAAACCGCGAAACCTTGATAGCAGATTTTGGTGAAAGTGCAATAGGCAGGGTTGCTCCTGTTGATTCTGGATTTTGGTGGATCATATTGCTTCGTGCATACACAAAATCTACAGGAGACTCTTCTTTAGCTGACCAGCCTGAATGTCAAAAGGGTATGCGTTTGATTCTGAGTTTATGCTTGTCAGAGGGGTTTGATACATTTCCAACTTTACTATGTGCTGATGGGTGCTGTATGATTGATCGTAGAATGGGTGTTTATGGCTATCCAATTGAAATTCAAGCATTGTTCTTCATGGCTTTAAGATGTGCCATGCTATTGCTTAAGCCAGATGCTGAAGGGAAAGAGTTTATGGAACGAATTGCGAAACGCTTGCATGCCTTAAGCTATCATATGAGAAGCCACTTTTGGTTGGATTTGAAGCAACTTAATGATATATATCGATTCAAAACAGAAGAGTACTCACATACTGCTGTGAACAAGTTTAATGTCATTCCCGATTCTTTACCAGATTGGATTTTTGATTTCATGCCTCATCATGGCGGATACTTTATTGGGAATGTGAGTCCGGCTAGGATGGATTTCCGCTGGTTTTGCCTTGGTAATTGCATAGCAATTTTGTCCTGCTTGGCAACTCCTGAACAGTCAGTTGCAATTATGGATCTCATAGAATCACGGTGGGAAGAATTAATTGGGGAGATGCCTGTCAAAGTTTGTTATCCAGCCCTTGAAAATCATGAATGGAGGATCATAACAGGATGTGACCCAAAAAATACTAGATGGAGTTACCACAATGGGGGATCTTGGCCAGTTATGTTATGGTTTTTGTCTGCGGCGGCTATCAAGACTGGGCGACCCCAAATTGCAAAACGTGCCCTTCAAATTGCTGAGGCCAGATTGCTAAAAGACAACTGGCCGGAATATTATGACGGAACACATGGTCGATACATTGGGAAGCAGGCTCGAAAATGCCAAACCTGGTCTATTGCTGGTTATTTGGTGGCTAGGATGATGCTTGATGATCCTTCACATTTAGGTATTATAGCACTTGAAGAAGACCGACAGCTAAAGGATCCTGTGCTCAAGAGATCAAATTCATGGACTTTGTGA

Protein sequence

>Msa1367370

MSTSTPPIDWSHHNGNGNLKSQDSLCSVAEFEEFDFSKVLDKPRTLNIERQRSCDERSMSELSIGLSPRLLASKLDNFPRLGEHLDHAFSPVHKSGLNTPRSLLLDSHSILPEAWEALRRSLVHFRGEPVGTIAALDNSDENLNYDQVFVRDFVPSALAFLMHGEPDIVKNFLLKTLRLQSWEKKIDRFHLAEGVMPASFKVFHDPVRNRETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADQPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCAMLLLKPDAEGKEFMERIAKRLHALSYHMRSHFWLDLKQLNDIYRFKTEEYSHTAVNKFNVIPDSLPDWIFDFMPHHGGYFIGNVSPARMDFRWFCLGNCIAILSCLATPEQSVAIMDLIESRWEELIGEMPVKVCYPALENHEWRIITGCDPKNTRWSYHNGGSWPVMLWFLSAAAIKTGRPQIAKRALQIAEARLLKDNWPEYYDGTHGRYIGKQARKCQTWSIAGYLVARMMLDDPSHLGIIALEEDRQLKDPVLKRSNSWTL*