Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660550 | XP_003621600.1 | 72.368 | 304 | 15 | 3 | 1 | 235 | 1 | 304 | 3.54e-123 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660550 | sp|Q9SIC9|PP178_ARATH | 30.112 | 269 | 146 | 5 | 6 | 234 | 57 | 323 | 3.17e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660550 | Msa0720270 | 0.804898 | 1.731710e-49 | -8.615850e-47 |
| Msa0207180 | Msa0660550 | 0.805128 | 1.549962e-49 | -8.615850e-47 |
| Msa0315480 | Msa0660550 | 0.815740 | 7.919597e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660550 | MtrunA17_Chr7g0220501 | 72.368 | 304 | 15 | 3 | 1 | 235 | 1 | 304 | 3.25e-127 | 382 |
| Msa0660550 | MtrunA17_Chr7g0220481 | 61.314 | 274 | 59 | 3 | 2 | 235 | 3 | 269 | 1.37e-98 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660550 | AT2G31400.2 | 30.112 | 269 | 146 | 5 | 6 | 234 | 57 | 323 | 2.86e-26 | 108 |
| Msa0660550 | AT2G31400.1 | 30.112 | 269 | 146 | 5 | 6 | 234 | 57 | 323 | 3.22e-26 | 108 |
Find 81 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGCTGGTGGCAGGGGC+AGG | 0.051465 | 4_3:-71408366 | Msa0660550:CDS |
| TTCATTATGTCGAAACAAAA+TGG | 0.184081 | 4_3:-71408013 | Msa0660550:CDS |
| GCTGCTGGTGGCAGGGGCAG+GGG | 0.223627 | 4_3:-71408364 | Msa0660550:CDS |
| TGCTGCTGGTGGCAGGGGCA+GGG | 0.228908 | 4_3:-71408365 | Msa0660550:CDS |
| TGCATATTCCTCCACTTTGC+TGG | 0.309064 | 4_3:-71408323 | Msa0660550:CDS |
| TCGGCCATGATTAGTGCTTT+TGG | 0.314395 | 4_3:-71407860 | Msa0660550:CDS |
| CCGATGCCGTGGATTTGTTC+AGG | 0.316160 | 4_3:-71407820 | Msa0660550:CDS |
| TGCTGCTGCTGCTGGTGGCA+GGG | 0.317141 | 4_3:-71408371 | Msa0660550:CDS |
| GCTGCTGCTGCTGGTGGCAG+GGG | 0.321664 | 4_3:-71408370 | Msa0660550:CDS |
| TACGCGGCCAAGATGCATTC+TGG | 0.356042 | 4_3:-71408247 | Msa0660550:CDS |
| GGGGAGATTAATCTTGCTTT+GGG | 0.357886 | 4_3:-71407935 | Msa0660550:CDS |
| AGGGGAGATTAATCTTGCTT+TGG | 0.363967 | 4_3:-71407936 | Msa0660550:CDS |
| AGGGGCAGGGGCAACGGCAG+AGG | 0.366102 | 4_3:-71408352 | Msa0660550:CDS |
| GAATTGTACGTTATCACATT+AGG | 0.373336 | 4_3:+71407773 | None:intergenic |
| GACCTCCTGCCAGAAAATTC+AGG | 0.375752 | 4_3:+71408277 | None:intergenic |
| TCATTGATGCTGGGGCGAAA+GGG | 0.388367 | 4_3:-71407748 | Msa0660550:CDS |
| CTGAACAAATCCACGGCATC+GGG | 0.395411 | 4_3:+71407821 | None:intergenic |
| GCAGGGAGTGAGGAGTAGTT+TGG | 0.408509 | 4_3:+71408589 | None:intergenic |
| GCACTGTGAGCATGTTTGTT+TGG | 0.410917 | 4_3:+71408208 | None:intergenic |
| CATCGGGGAAGCGCCCATTT+CGG | 0.411707 | 4_3:+71407837 | None:intergenic |
| CAAAATGGGAGGGTTGATAA+AGG | 0.413662 | 4_3:-71407998 | Msa0660550:CDS |
| CCTTTCTGTTTGCGCATCGA+AGG | 0.423272 | 4_3:-71407639 | Msa0660550:CDS |
| TTTGAAAGAGCTAGGCTTGA+AGG | 0.425464 | 4_3:-71407908 | Msa0660550:CDS |
| TGTTCAGGTCCATGAGTAGC+TGG | 0.425595 | 4_3:-71407805 | Msa0660550:CDS |
| TGCTGGAGGGCAGGCAATCA+AGG | 0.429090 | 4_3:-71408306 | Msa0660550:CDS |
| ATCGAAGGGCATGTGGGAAA+TGG | 0.430341 | 4_3:-71407624 | Msa0660550:CDS |
| TACAATTCAATCATTGATGC+TGG | 0.432368 | 4_3:-71407758 | Msa0660550:CDS |
| GGTGGCAGGGGCAGGGGCAA+CGG | 0.436925 | 4_3:-71408358 | Msa0660550:CDS |
| GAGTAGTTTGGTGGAGGAGT+TGG | 0.439492 | 4_3:+71408601 | None:intergenic |
| ATCATTGATGCTGGGGCGAA+AGG | 0.448222 | 4_3:-71407749 | Msa0660550:CDS |
| CCTCCACTTTGCTGGAGGGC+AGG | 0.452192 | 4_3:-71408315 | Msa0660550:CDS |
| TGTGCATTTCTAGGAGTAGC+AGG | 0.454704 | 4_3:+71408571 | None:intergenic |
| TCATTATGTCGAAACAAAAT+GGG | 0.464595 | 4_3:-71408012 | Msa0660550:CDS |
| AGAGCTAGGCTTGAAGGGTA+TGG | 0.483223 | 4_3:-71407902 | Msa0660550:CDS |
| AGCACTAATCATGGCCGAAA+AGG | 0.488580 | 4_3:+71407865 | None:intergenic |
| TGTTTGTTTGGCGTCACCCT+CGG | 0.490116 | 4_3:+71408220 | None:intergenic |
| CTTTCTGTTTGCGCATCGAA+GGG | 0.495145 | 4_3:-71407638 | Msa0660550:CDS |
| GAATTGTAAGTAAGCCGATC+TGG | 0.496260 | 4_3:+71407665 | None:intergenic |
| GCTGCGGCTGACGAGGCACT+TGG | 0.501165 | 4_3:-71408187 | Msa0660550:CDS |
| GGGAGTGAGGAGTAGTTTGG+TGG | 0.506229 | 4_3:+71408592 | None:intergenic |
| AGTGAGGAGTAGTTTGGTGG+AGG | 0.510060 | 4_3:+71408595 | None:intergenic |
| TGGGCGCTTCCCCGATGCCG+TGG | 0.511898 | 4_3:-71407831 | Msa0660550:CDS |
| ATATTCCTCCACTTTGCTGG+AGG | 0.517843 | 4_3:-71408320 | Msa0660550:CDS |
| TGGGATTGTTTGAAAGAGCT+AGG | 0.521127 | 4_3:-71407916 | Msa0660550:CDS |
| GTTCAGGTCCATGAGTAGCT+GGG | 0.522519 | 4_3:-71407804 | Msa0660550:CDS |
| CGGCATTCCAGAATGCATCT+TGG | 0.524738 | 4_3:+71408240 | None:intergenic |
| GAAGTAGGTACCAATGGAAG+TGG | 0.525331 | 4_3:-71408403 | Msa0660550:intron |
| TATTCCTCCACTTTGCTGGA+GGG | 0.527376 | 4_3:-71408319 | Msa0660550:CDS |
| ACAATTCAATCATTGATGCT+GGG | 0.529311 | 4_3:-71407757 | Msa0660550:CDS |
| TACAACTCCCCAGCTACTCA+TGG | 0.531220 | 4_3:+71407796 | None:intergenic |
| AGCAGCACTTCCACTTCCAT+TGG | 0.531355 | 4_3:+71408393 | None:intergenic |
| CTTGGCTGTCTGTTCAAAGC+TGG | 0.541428 | 4_3:-71408169 | Msa0660550:intron |
| TCGGCCAAAAGCACTAATCA+TGG | 0.541479 | 4_3:+71407856 | None:intergenic |
| CATTGATGCTGGGGCGAAAG+GGG | 0.544104 | 4_3:-71407747 | Msa0660550:CDS |
| CCTGAACAAATCCACGGCAT+CGG | 0.546111 | 4_3:+71407820 | None:intergenic |
| TTGAAAGAGCTAGGCTTGAA+GGG | 0.547653 | 4_3:-71407907 | Msa0660550:CDS |
| GGAGGGCAGGCAATCAAGGT+TGG | 0.547953 | 4_3:-71408302 | Msa0660550:CDS |
| TCACAGTGCTGCGGCTGACG+AGG | 0.548183 | 4_3:-71408194 | Msa0660550:CDS |
| TTCAGGTCCATGAGTAGCTG+GGG | 0.555746 | 4_3:-71407803 | Msa0660550:CDS |
| CCAACGGCATAATGCCAGAT+CGG | 0.572820 | 4_3:-71407679 | Msa0660550:CDS |
| CCTTCGATGCGCAAACAGAA+AGG | 0.574233 | 4_3:+71407639 | None:intergenic |
| TTTGCGCATCGAAGGGCATG+TGG | 0.576722 | 4_3:-71407631 | Msa0660550:CDS |
| TCTAGGAGTAGCAGGGAGTG+AGG | 0.582622 | 4_3:+71408579 | None:intergenic |
| CCGATCTGGCATTATGCCGT+TGG | 0.584083 | 4_3:+71407679 | None:intergenic |
| GTGCATTTCTAGGAGTAGCA+GGG | 0.590309 | 4_3:+71408572 | None:intergenic |
| CAATTCAATCATTGATGCTG+GGG | 0.590962 | 4_3:-71407756 | Msa0660550:CDS |
| TTATGTCGAAACAAAATGGG+AGG | 0.594963 | 4_3:-71408009 | Msa0660550:CDS |
| GTTGCTGAAGTAGGTACCAA+TGG | 0.602499 | 4_3:-71408409 | Msa0660550:intron |
| CAGGAGGTCAACGCGGTACG+CGG | 0.602960 | 4_3:-71408263 | Msa0660550:CDS |
| TAGGACGTTTATGAGTGCTA+TGG | 0.606409 | 4_3:+71408500 | None:intergenic |
| TTGCCTGCCCTCCAGCAAAG+TGG | 0.628894 | 4_3:+71408312 | None:intergenic |
| AGATGCATTCTGGAATGCCG+AGG | 0.632932 | 4_3:-71408237 | Msa0660550:CDS |
| CCTGCCCTCCAGCAAAGTGG+AGG | 0.634595 | 4_3:+71408315 | None:intergenic |
| TGGCACTCTTGGTAGGTTAG+GGG | 0.634687 | 4_3:-71407954 | Msa0660550:intron |
| TATGTCGAAACAAAATGGGA+GGG | 0.643664 | 4_3:-71408008 | Msa0660550:CDS |
| GATGCATTCTGGAATGCCGA+GGG | 0.647748 | 4_3:-71408236 | Msa0660550:CDS |
| TTGCGCATCGAAGGGCATGT+GGG | 0.648600 | 4_3:-71407630 | Msa0660550:CDS |
| CATGGACCTGAACAAATCCA+CGG | 0.687332 | 4_3:+71407814 | None:intergenic |
| CAAACATGCTCACAGTGCTG+CGG | 0.703611 | 4_3:-71408203 | Msa0660550:CDS |
| TTTCTGGCAGGAGGTCAACG+CGG | 0.711932 | 4_3:-71408270 | Msa0660550:CDS |
| TGAACAAATCCACGGCATCG+GGG | 0.747328 | 4_3:+71407822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATATGAACATAAGTTA+TGG | - | chr4_3:71408104-71408123 | Msa0660550:intron | 20.0% |
| !! | TACATATGAACATAAGTTAT+GGG | - | chr4_3:71408105-71408124 | Msa0660550:intron | 20.0% |
| !! | ATTTATATGCTAAAAGAGTT+TGG | - | chr4_3:71408142-71408161 | Msa0660550:intron | 20.0% |
| !! | TTACATATGAACATAAGTTA+TGG | - | chr4_3:71408104-71408123 | Msa0660550:intron | 20.0% |
| !! | TACATATGAACATAAGTTAT+GGG | - | chr4_3:71408105-71408124 | Msa0660550:intron | 20.0% |
| !! | ATTTATATGCTAAAAGAGTT+TGG | - | chr4_3:71408142-71408161 | Msa0660550:intron | 20.0% |
| ! | TTCATTATGTCGAAACAAAA+TGG | - | chr4_3:71408205-71408224 | Msa0660550:CDS | 25.0% |
| ! | TCATTATGTCGAAACAAAAT+GGG | - | chr4_3:71408206-71408225 | Msa0660550:CDS | 25.0% |
| ! | TTCATTATGTCGAAACAAAA+TGG | - | chr4_3:71408205-71408224 | Msa0660550:CDS | 25.0% |
| ! | TCATTATGTCGAAACAAAAT+GGG | - | chr4_3:71408206-71408225 | Msa0660550:CDS | 25.0% |
| !!! | TTATGGTTTTGTGCATTTCT+AGG | + | chr4_3:71407659-71407678 | None:intergenic | 30.0% |
| !! | GATTTTGGTGATTGTGATTA+TGG | + | chr4_3:71407676-71407695 | None:intergenic | 30.0% |
| !!! | GTCTACTGTTTTGTTGATTT+TGG | + | chr4_3:71407691-71407710 | None:intergenic | 30.0% |
| ATATGAACATAAGTTATGGG+AGG | - | chr4_3:71408108-71408127 | Msa0660550:intron | 30.0% | |
| AAGTTAGTTAGTGCTATGAT+TGG | - | chr4_3:71408244-71408263 | Msa0660550:CDS | 30.0% | |
| GAATTGTACGTTATCACATT+AGG | + | chr4_3:71408448-71408467 | None:intergenic | 30.0% | |
| TACAATTCAATCATTGATGC+TGG | - | chr4_3:71408460-71408479 | Msa0660550:intron | 30.0% | |
| ACAATTCAATCATTGATGCT+GGG | - | chr4_3:71408461-71408480 | Msa0660550:intron | 30.0% | |
| TACAATGAAATGATAGCCAA+CGG | - | chr4_3:71408523-71408542 | Msa0660550:CDS | 30.0% | |
| !!! | TTATGGTTTTGTGCATTTCT+AGG | + | chr4_3:71407659-71407678 | None:intergenic | 30.0% |
| !! | GATTTTGGTGATTGTGATTA+TGG | + | chr4_3:71407676-71407695 | None:intergenic | 30.0% |
| !!! | GTCTACTGTTTTGTTGATTT+TGG | + | chr4_3:71407691-71407710 | None:intergenic | 30.0% |
| ATATGAACATAAGTTATGGG+AGG | - | chr4_3:71408108-71408127 | Msa0660550:intron | 30.0% | |
| AAGTTAGTTAGTGCTATGAT+TGG | - | chr4_3:71408244-71408263 | Msa0660550:CDS | 30.0% | |
| GAATTGTACGTTATCACATT+AGG | + | chr4_3:71408448-71408467 | None:intergenic | 30.0% | |
| TACAATTCAATCATTGATGC+TGG | - | chr4_3:71408460-71408479 | Msa0660550:intron | 30.0% | |
| ACAATTCAATCATTGATGCT+GGG | - | chr4_3:71408461-71408480 | Msa0660550:intron | 30.0% | |
| TACAATGAAATGATAGCCAA+CGG | - | chr4_3:71408523-71408542 | Msa0660550:CDS | 30.0% | |
| TTATGTCGAAACAAAATGGG+AGG | - | chr4_3:71408209-71408228 | Msa0660550:CDS | 35.0% | |
| TATGTCGAAACAAAATGGGA+GGG | - | chr4_3:71408210-71408229 | Msa0660550:CDS | 35.0% | |
| !! | AAGCACTGTGTATTCCTTTT+CGG | - | chr4_3:71408339-71408358 | Msa0660550:CDS | 35.0% |
| CAATTCAATCATTGATGCTG+GGG | - | chr4_3:71408462-71408481 | Msa0660550:intron | 35.0% | |
| TTATGTCGAAACAAAATGGG+AGG | - | chr4_3:71408209-71408228 | Msa0660550:CDS | 35.0% | |
| TATGTCGAAACAAAATGGGA+GGG | - | chr4_3:71408210-71408229 | Msa0660550:CDS | 35.0% | |
| !! | AAGCACTGTGTATTCCTTTT+CGG | - | chr4_3:71408339-71408358 | Msa0660550:CDS | 35.0% |
| CAATTCAATCATTGATGCTG+GGG | - | chr4_3:71408462-71408481 | Msa0660550:intron | 35.0% | |
| TAGGACGTTTATGAGTGCTA+TGG | + | chr4_3:71407721-71407740 | None:intergenic | 40.0% | |
| ATAAACGTCCTAGAGACCAT+TGG | - | chr4_3:71407729-71407748 | Msa0660550:CDS | 40.0% | |
| !! | CAAAATGGGAGGGTTGATAA+AGG | - | chr4_3:71408220-71408239 | Msa0660550:CDS | 40.0% |
| AGGGGAGATTAATCTTGCTT+TGG | - | chr4_3:71408282-71408301 | Msa0660550:CDS | 40.0% | |
| GGGGAGATTAATCTTGCTTT+GGG | - | chr4_3:71408283-71408302 | Msa0660550:CDS | 40.0% | |
| TGGGATTGTTTGAAAGAGCT+AGG | - | chr4_3:71408302-71408321 | Msa0660550:CDS | 40.0% | |
| TTTGAAAGAGCTAGGCTTGA+AGG | - | chr4_3:71408310-71408329 | Msa0660550:CDS | 40.0% | |
| TTGAAAGAGCTAGGCTTGAA+GGG | - | chr4_3:71408311-71408330 | Msa0660550:CDS | 40.0% | |
| ! | ATTAGTGCTTTTGGCCGAAA+TGG | - | chr4_3:71408367-71408386 | Msa0660550:CDS | 40.0% |
| ! | TTAGTGCTTTTGGCCGAAAT+GGG | - | chr4_3:71408368-71408387 | Msa0660550:CDS | 40.0% |
| GAATTGTAAGTAAGCCGATC+TGG | + | chr4_3:71408556-71408575 | None:intergenic | 40.0% | |
| TAGGACGTTTATGAGTGCTA+TGG | + | chr4_3:71407721-71407740 | None:intergenic | 40.0% | |
| ATAAACGTCCTAGAGACCAT+TGG | - | chr4_3:71407729-71407748 | Msa0660550:CDS | 40.0% | |
| !! | CAAAATGGGAGGGTTGATAA+AGG | - | chr4_3:71408220-71408239 | Msa0660550:CDS | 40.0% |
| AGGGGAGATTAATCTTGCTT+TGG | - | chr4_3:71408282-71408301 | Msa0660550:CDS | 40.0% | |
| GGGGAGATTAATCTTGCTTT+GGG | - | chr4_3:71408283-71408302 | Msa0660550:CDS | 40.0% | |
| TGGGATTGTTTGAAAGAGCT+AGG | - | chr4_3:71408302-71408321 | Msa0660550:CDS | 40.0% | |
| TTTGAAAGAGCTAGGCTTGA+AGG | - | chr4_3:71408310-71408329 | Msa0660550:CDS | 40.0% | |
| TTGAAAGAGCTAGGCTTGAA+GGG | - | chr4_3:71408311-71408330 | Msa0660550:CDS | 40.0% | |
| ! | ATTAGTGCTTTTGGCCGAAA+TGG | - | chr4_3:71408367-71408386 | Msa0660550:CDS | 40.0% |
| ! | TTAGTGCTTTTGGCCGAAAT+GGG | - | chr4_3:71408368-71408387 | Msa0660550:CDS | 40.0% |
| GAATTGTAAGTAAGCCGATC+TGG | + | chr4_3:71408556-71408575 | None:intergenic | 40.0% | |
| ! | GTGCATTTCTAGGAGTAGCA+GGG | + | chr4_3:71407649-71407668 | None:intergenic | 45.0% |
| ! | TGTGCATTTCTAGGAGTAGC+AGG | + | chr4_3:71407650-71407669 | None:intergenic | 45.0% |
| GTTGCTGAAGTAGGTACCAA+TGG | - | chr4_3:71407809-71407828 | Msa0660550:CDS | 45.0% | |
| GAAGTAGGTACCAATGGAAG+TGG | - | chr4_3:71407815-71407834 | Msa0660550:CDS | 45.0% | |
| TGCATATTCCTCCACTTTGC+TGG | - | chr4_3:71407895-71407914 | Msa0660550:CDS | 45.0% | |
| ATATTCCTCCACTTTGCTGG+AGG | - | chr4_3:71407898-71407917 | Msa0660550:CDS | 45.0% | |
| TATTCCTCCACTTTGCTGGA+GGG | - | chr4_3:71407899-71407918 | Msa0660550:CDS | 45.0% | |
| !! | AGGTTGGCTCCTGAATTTTC+TGG | - | chr4_3:71407932-71407951 | Msa0660550:CDS | 45.0% |
| GCACTGTGAGCATGTTTGTT+TGG | + | chr4_3:71408013-71408032 | None:intergenic | 45.0% | |
| AGTGCTATGATTGGCACTCT+TGG | - | chr4_3:71408253-71408272 | Msa0660550:CDS | 45.0% | |
| CTATGATTGGCACTCTTGGT+AGG | - | chr4_3:71408257-71408276 | Msa0660550:CDS | 45.0% | |
| ATTGGCACTCTTGGTAGGTT+AGG | - | chr4_3:71408262-71408281 | Msa0660550:CDS | 45.0% | |
| TTGGCACTCTTGGTAGGTTA+GGG | - | chr4_3:71408263-71408282 | Msa0660550:CDS | 45.0% | |
| AGCACTAATCATGGCCGAAA+AGG | + | chr4_3:71408356-71408375 | None:intergenic | 45.0% | |
| ! | TCGGCCATGATTAGTGCTTT+TGG | - | chr4_3:71408358-71408377 | Msa0660550:CDS | 45.0% |
| !! | TCGGCCAAAAGCACTAATCA+TGG | + | chr4_3:71408365-71408384 | None:intergenic | 45.0% |
| CATGGACCTGAACAAATCCA+CGG | + | chr4_3:71408407-71408426 | None:intergenic | 45.0% | |
| CTTTCTGTTTGCGCATCGAA+GGG | - | chr4_3:71408580-71408599 | Msa0660550:CDS | 45.0% | |
| ! | GTGCATTTCTAGGAGTAGCA+GGG | + | chr4_3:71407649-71407668 | None:intergenic | 45.0% |
| ! | TGTGCATTTCTAGGAGTAGC+AGG | + | chr4_3:71407650-71407669 | None:intergenic | 45.0% |
| GTTGCTGAAGTAGGTACCAA+TGG | - | chr4_3:71407809-71407828 | Msa0660550:CDS | 45.0% | |
| GAAGTAGGTACCAATGGAAG+TGG | - | chr4_3:71407815-71407834 | Msa0660550:CDS | 45.0% | |
| TGCATATTCCTCCACTTTGC+TGG | - | chr4_3:71407895-71407914 | Msa0660550:CDS | 45.0% | |
| ATATTCCTCCACTTTGCTGG+AGG | - | chr4_3:71407898-71407917 | Msa0660550:CDS | 45.0% | |
| TATTCCTCCACTTTGCTGGA+GGG | - | chr4_3:71407899-71407918 | Msa0660550:CDS | 45.0% | |
| !! | AGGTTGGCTCCTGAATTTTC+TGG | - | chr4_3:71407932-71407951 | Msa0660550:CDS | 45.0% |
| GCACTGTGAGCATGTTTGTT+TGG | + | chr4_3:71408013-71408032 | None:intergenic | 45.0% | |
| AGTGCTATGATTGGCACTCT+TGG | - | chr4_3:71408253-71408272 | Msa0660550:CDS | 45.0% | |
| CTATGATTGGCACTCTTGGT+AGG | - | chr4_3:71408257-71408276 | Msa0660550:CDS | 45.0% | |
| ATTGGCACTCTTGGTAGGTT+AGG | - | chr4_3:71408262-71408281 | Msa0660550:CDS | 45.0% | |
| TTGGCACTCTTGGTAGGTTA+GGG | - | chr4_3:71408263-71408282 | Msa0660550:CDS | 45.0% | |
| AGCACTAATCATGGCCGAAA+AGG | + | chr4_3:71408356-71408375 | None:intergenic | 45.0% | |
| ! | TCGGCCATGATTAGTGCTTT+TGG | - | chr4_3:71408358-71408377 | Msa0660550:CDS | 45.0% |
| !! | TCGGCCAAAAGCACTAATCA+TGG | + | chr4_3:71408365-71408384 | None:intergenic | 45.0% |
| CATGGACCTGAACAAATCCA+CGG | + | chr4_3:71408407-71408426 | None:intergenic | 45.0% | |
| CTTTCTGTTTGCGCATCGAA+GGG | - | chr4_3:71408580-71408599 | Msa0660550:CDS | 45.0% | |
| ! | GAGTAGTTTGGTGGAGGAGT+TGG | + | chr4_3:71407620-71407639 | None:intergenic | 50.0% |
| ! | AGTGAGGAGTAGTTTGGTGG+AGG | + | chr4_3:71407626-71407645 | None:intergenic | 50.0% |
| GACGAAGACCAATGGTCTCT+AGG | + | chr4_3:71407740-71407759 | None:intergenic | 50.0% | |
| !! | ACCATTGGTCTTCGTCCTCT+AGG | - | chr4_3:71407744-71407763 | Msa0660550:CDS | 50.0% |
| TGAGGTGGAATAGTGCCTAG+AGG | + | chr4_3:71407762-71407781 | None:intergenic | 50.0% | |
| AGCAGCACTTCCACTTCCAT+TGG | + | chr4_3:71407828-71407847 | None:intergenic | 50.0% | |
| !! | TGGCTCCTGAATTTTCTGGC+AGG | - | chr4_3:71407936-71407955 | Msa0660550:CDS | 50.0% |
| !! | CTCCTGAATTTTCTGGCAGG+AGG | - | chr4_3:71407939-71407958 | Msa0660550:CDS | 50.0% |
| GACCTCCTGCCAGAAAATTC+AGG | + | chr4_3:71407944-71407963 | None:intergenic | 50.0% | |
| CGGCATTCCAGAATGCATCT+TGG | + | chr4_3:71407981-71408000 | None:intergenic | 50.0% | |
| !! | AGATGCATTCTGGAATGCCG+AGG | - | chr4_3:71407981-71408000 | Msa0660550:intron | 50.0% |
| !! | GATGCATTCTGGAATGCCGA+GGG | - | chr4_3:71407982-71408001 | Msa0660550:intron | 50.0% |
| TGTTTGTTTGGCGTCACCCT+CGG | + | chr4_3:71408001-71408020 | None:intergenic | 50.0% | |
| CAAACATGCTCACAGTGCTG+CGG | - | chr4_3:71408015-71408034 | Msa0660550:CDS | 50.0% | |
| CTTGGCTGTCTGTTCAAAGC+TGG | - | chr4_3:71408049-71408068 | Msa0660550:CDS | 50.0% | |
| TGGCACTCTTGGTAGGTTAG+GGG | - | chr4_3:71408264-71408283 | Msa0660550:CDS | 50.0% | |
| AGAGCTAGGCTTGAAGGGTA+TGG | - | chr4_3:71408316-71408335 | Msa0660550:CDS | 50.0% | |
| TGAACAAATCCACGGCATCG+GGG | + | chr4_3:71408399-71408418 | None:intergenic | 50.0% | |
| CTGAACAAATCCACGGCATC+GGG | + | chr4_3:71408400-71408419 | None:intergenic | 50.0% | |
| CCTGAACAAATCCACGGCAT+CGG | + | chr4_3:71408401-71408420 | None:intergenic | 50.0% | |
| TGTTCAGGTCCATGAGTAGC+TGG | - | chr4_3:71408413-71408432 | Msa0660550:intron | 50.0% | |
| GTTCAGGTCCATGAGTAGCT+GGG | - | chr4_3:71408414-71408433 | Msa0660550:intron | 50.0% | |
| TTCAGGTCCATGAGTAGCTG+GGG | - | chr4_3:71408415-71408434 | Msa0660550:intron | 50.0% | |
| TACAACTCCCCAGCTACTCA+TGG | + | chr4_3:71408425-71408444 | None:intergenic | 50.0% | |
| ATCATTGATGCTGGGGCGAA+AGG | - | chr4_3:71408469-71408488 | Msa0660550:intron | 50.0% | |
| TCATTGATGCTGGGGCGAAA+GGG | - | chr4_3:71408470-71408489 | Msa0660550:intron | 50.0% | |
| CCAACGGCATAATGCCAGAT+CGG | - | chr4_3:71408539-71408558 | Msa0660550:CDS | 50.0% | |
| CCTTCGATGCGCAAACAGAA+AGG | + | chr4_3:71408582-71408601 | None:intergenic | 50.0% | |
| CCTTTCTGTTTGCGCATCGA+AGG | - | chr4_3:71408579-71408598 | Msa0660550:CDS | 50.0% | |
| ! | ATCGAAGGGCATGTGGGAAA+TGG | - | chr4_3:71408594-71408613 | Msa0660550:CDS | 50.0% |
| ! | GAGTAGTTTGGTGGAGGAGT+TGG | + | chr4_3:71407620-71407639 | None:intergenic | 50.0% |
| ! | AGTGAGGAGTAGTTTGGTGG+AGG | + | chr4_3:71407626-71407645 | None:intergenic | 50.0% |
| GACGAAGACCAATGGTCTCT+AGG | + | chr4_3:71407740-71407759 | None:intergenic | 50.0% | |
| !! | ACCATTGGTCTTCGTCCTCT+AGG | - | chr4_3:71407744-71407763 | Msa0660550:CDS | 50.0% |
| TGAGGTGGAATAGTGCCTAG+AGG | + | chr4_3:71407762-71407781 | None:intergenic | 50.0% | |
| AGCAGCACTTCCACTTCCAT+TGG | + | chr4_3:71407828-71407847 | None:intergenic | 50.0% | |
| !! | TGGCTCCTGAATTTTCTGGC+AGG | - | chr4_3:71407936-71407955 | Msa0660550:CDS | 50.0% |
| !! | CTCCTGAATTTTCTGGCAGG+AGG | - | chr4_3:71407939-71407958 | Msa0660550:CDS | 50.0% |
| GACCTCCTGCCAGAAAATTC+AGG | + | chr4_3:71407944-71407963 | None:intergenic | 50.0% | |
| CGGCATTCCAGAATGCATCT+TGG | + | chr4_3:71407981-71408000 | None:intergenic | 50.0% | |
| !! | AGATGCATTCTGGAATGCCG+AGG | - | chr4_3:71407981-71408000 | Msa0660550:intron | 50.0% |
| !! | GATGCATTCTGGAATGCCGA+GGG | - | chr4_3:71407982-71408001 | Msa0660550:intron | 50.0% |
| TGTTTGTTTGGCGTCACCCT+CGG | + | chr4_3:71408001-71408020 | None:intergenic | 50.0% | |
| CAAACATGCTCACAGTGCTG+CGG | - | chr4_3:71408015-71408034 | Msa0660550:CDS | 50.0% | |
| CTTGGCTGTCTGTTCAAAGC+TGG | - | chr4_3:71408049-71408068 | Msa0660550:CDS | 50.0% | |
| TGGCACTCTTGGTAGGTTAG+GGG | - | chr4_3:71408264-71408283 | Msa0660550:CDS | 50.0% | |
| AGAGCTAGGCTTGAAGGGTA+TGG | - | chr4_3:71408316-71408335 | Msa0660550:CDS | 50.0% | |
| TGAACAAATCCACGGCATCG+GGG | + | chr4_3:71408399-71408418 | None:intergenic | 50.0% | |
| CTGAACAAATCCACGGCATC+GGG | + | chr4_3:71408400-71408419 | None:intergenic | 50.0% | |
| CCTGAACAAATCCACGGCAT+CGG | + | chr4_3:71408401-71408420 | None:intergenic | 50.0% | |
| TGTTCAGGTCCATGAGTAGC+TGG | - | chr4_3:71408413-71408432 | Msa0660550:intron | 50.0% | |
| GTTCAGGTCCATGAGTAGCT+GGG | - | chr4_3:71408414-71408433 | Msa0660550:intron | 50.0% | |
| TTCAGGTCCATGAGTAGCTG+GGG | - | chr4_3:71408415-71408434 | Msa0660550:intron | 50.0% | |
| TACAACTCCCCAGCTACTCA+TGG | + | chr4_3:71408425-71408444 | None:intergenic | 50.0% | |
| ATCATTGATGCTGGGGCGAA+AGG | - | chr4_3:71408469-71408488 | Msa0660550:intron | 50.0% | |
| TCATTGATGCTGGGGCGAAA+GGG | - | chr4_3:71408470-71408489 | Msa0660550:intron | 50.0% | |
| CCAACGGCATAATGCCAGAT+CGG | - | chr4_3:71408539-71408558 | Msa0660550:CDS | 50.0% | |
| CCTTCGATGCGCAAACAGAA+AGG | + | chr4_3:71408582-71408601 | None:intergenic | 50.0% | |
| CCTTTCTGTTTGCGCATCGA+AGG | - | chr4_3:71408579-71408598 | Msa0660550:CDS | 50.0% | |
| ! | ATCGAAGGGCATGTGGGAAA+TGG | - | chr4_3:71408594-71408613 | Msa0660550:CDS | 50.0% |
| GGGAGTGAGGAGTAGTTTGG+TGG | + | chr4_3:71407629-71407648 | None:intergenic | 55.0% | |
| GCAGGGAGTGAGGAGTAGTT+TGG | + | chr4_3:71407632-71407651 | None:intergenic | 55.0% | |
| TCTAGGAGTAGCAGGGAGTG+AGG | + | chr4_3:71407642-71407661 | None:intergenic | 55.0% | |
| GCCTAGAGGACGAAGACCAA+TGG | + | chr4_3:71407748-71407767 | None:intergenic | 55.0% | |
| TACAGGTGCAGAGTGTGAGG+TGG | + | chr4_3:71407777-71407796 | None:intergenic | 55.0% | |
| AGCTACAGGTGCAGAGTGTG+AGG | + | chr4_3:71407780-71407799 | None:intergenic | 55.0% | |
| GCTGCTGCTGTTGCTGAAGT+AGG | - | chr4_3:71407800-71407819 | Msa0660550:CDS | 55.0% | |
| ! | TTTCTGGCAGGAGGTCAACG+CGG | - | chr4_3:71407948-71407967 | Msa0660550:intron | 55.0% |
| TACGCGGCCAAGATGCATTC+TGG | - | chr4_3:71407971-71407990 | Msa0660550:intron | 55.0% | |
| ! | CCGATGCCGTGGATTTGTTC+AGG | - | chr4_3:71408398-71408417 | Msa0660550:CDS | 55.0% |
| CATTGATGCTGGGGCGAAAG+GGG | - | chr4_3:71408471-71408490 | Msa0660550:intron | 55.0% | |
| CCGATCTGGCATTATGCCGT+TGG | + | chr4_3:71408542-71408561 | None:intergenic | 55.0% | |
| ! | TTTGCGCATCGAAGGGCATG+TGG | - | chr4_3:71408587-71408606 | Msa0660550:CDS | 55.0% |
| ! | TTGCGCATCGAAGGGCATGT+GGG | - | chr4_3:71408588-71408607 | Msa0660550:CDS | 55.0% |
| GGGAGTGAGGAGTAGTTTGG+TGG | + | chr4_3:71407629-71407648 | None:intergenic | 55.0% | |
| GCAGGGAGTGAGGAGTAGTT+TGG | + | chr4_3:71407632-71407651 | None:intergenic | 55.0% | |
| TCTAGGAGTAGCAGGGAGTG+AGG | + | chr4_3:71407642-71407661 | None:intergenic | 55.0% | |
| GCCTAGAGGACGAAGACCAA+TGG | + | chr4_3:71407748-71407767 | None:intergenic | 55.0% | |
| TACAGGTGCAGAGTGTGAGG+TGG | + | chr4_3:71407777-71407796 | None:intergenic | 55.0% | |
| AGCTACAGGTGCAGAGTGTG+AGG | + | chr4_3:71407780-71407799 | None:intergenic | 55.0% | |
| GCTGCTGCTGTTGCTGAAGT+AGG | - | chr4_3:71407800-71407819 | Msa0660550:CDS | 55.0% | |
| ! | TTTCTGGCAGGAGGTCAACG+CGG | - | chr4_3:71407948-71407967 | Msa0660550:intron | 55.0% |
| TACGCGGCCAAGATGCATTC+TGG | - | chr4_3:71407971-71407990 | Msa0660550:intron | 55.0% | |
| ! | CCGATGCCGTGGATTTGTTC+AGG | - | chr4_3:71408398-71408417 | Msa0660550:CDS | 55.0% |
| CATTGATGCTGGGGCGAAAG+GGG | - | chr4_3:71408471-71408490 | Msa0660550:intron | 55.0% | |
| CCGATCTGGCATTATGCCGT+TGG | + | chr4_3:71408542-71408561 | None:intergenic | 55.0% | |
| ! | TTTGCGCATCGAAGGGCATG+TGG | - | chr4_3:71408587-71408606 | Msa0660550:CDS | 55.0% |
| ! | TTGCGCATCGAAGGGCATGT+GGG | - | chr4_3:71408588-71408607 | Msa0660550:CDS | 55.0% |
| GCAACAGCAGCAGCAGCTAC+AGG | + | chr4_3:71407794-71407813 | None:intergenic | 60.0% | |
| TTGCCTGCCCTCCAGCAAAG+TGG | + | chr4_3:71407909-71407928 | None:intergenic | 60.0% | |
| TGCTGGAGGGCAGGCAATCA+AGG | - | chr4_3:71407912-71407931 | Msa0660550:CDS | 60.0% | |
| GGAGGGCAGGCAATCAAGGT+TGG | - | chr4_3:71407916-71407935 | Msa0660550:CDS | 60.0% | |
| !! | CATCGGGGAAGCGCCCATTT+CGG | + | chr4_3:71408384-71408403 | None:intergenic | 60.0% |
| GCAACAGCAGCAGCAGCTAC+AGG | + | chr4_3:71407794-71407813 | None:intergenic | 60.0% | |
| TTGCCTGCCCTCCAGCAAAG+TGG | + | chr4_3:71407909-71407928 | None:intergenic | 60.0% | |
| TGCTGGAGGGCAGGCAATCA+AGG | - | chr4_3:71407912-71407931 | Msa0660550:CDS | 60.0% | |
| GGAGGGCAGGCAATCAAGGT+TGG | - | chr4_3:71407916-71407935 | Msa0660550:CDS | 60.0% | |
| !! | CATCGGGGAAGCGCCCATTT+CGG | + | chr4_3:71408384-71408403 | None:intergenic | 60.0% |
| ! | AGTGCTGCTGCTGCTGCTGC+TGG | - | chr4_3:71407839-71407858 | Msa0660550:CDS | 65.0% |
| TGCTGCTGCTGCTGGTGGCA+GGG | - | chr4_3:71407847-71407866 | Msa0660550:CDS | 65.0% | |
| CCTGCCCTCCAGCAAAGTGG+AGG | + | chr4_3:71407906-71407925 | None:intergenic | 65.0% | |
| CCTCCACTTTGCTGGAGGGC+AGG | - | chr4_3:71407903-71407922 | Msa0660550:CDS | 65.0% | |
| CAGGAGGTCAACGCGGTACG+CGG | - | chr4_3:71407955-71407974 | Msa0660550:intron | 65.0% | |
| TCACAGTGCTGCGGCTGACG+AGG | - | chr4_3:71408024-71408043 | Msa0660550:CDS | 65.0% | |
| ! | AGTGCTGCTGCTGCTGCTGC+TGG | - | chr4_3:71407839-71407858 | Msa0660550:CDS | 65.0% |
| TGCTGCTGCTGCTGGTGGCA+GGG | - | chr4_3:71407847-71407866 | Msa0660550:CDS | 65.0% | |
| CCTGCCCTCCAGCAAAGTGG+AGG | + | chr4_3:71407906-71407925 | None:intergenic | 65.0% | |
| CCTCCACTTTGCTGGAGGGC+AGG | - | chr4_3:71407903-71407922 | Msa0660550:CDS | 65.0% | |
| CAGGAGGTCAACGCGGTACG+CGG | - | chr4_3:71407955-71407974 | Msa0660550:intron | 65.0% | |
| TCACAGTGCTGCGGCTGACG+AGG | - | chr4_3:71408024-71408043 | Msa0660550:CDS | 65.0% | |
| GCTGCTGCTGCTGCTGCTGG+TGG | - | chr4_3:71407842-71407861 | Msa0660550:CDS | 70.0% | |
| CTGCTGCTGCTGCTGGTGGC+AGG | - | chr4_3:71407846-71407865 | Msa0660550:CDS | 70.0% | |
| GCTGCTGCTGCTGGTGGCAG+GGG | - | chr4_3:71407848-71407867 | Msa0660550:CDS | 70.0% | |
| TGCTGCTGGTGGCAGGGGCA+GGG | - | chr4_3:71407853-71407872 | Msa0660550:CDS | 70.0% | |
| ! | GCTGCGGCTGACGAGGCACT+TGG | - | chr4_3:71408031-71408050 | Msa0660550:CDS | 70.0% |
| GCTGCTGCTGCTGCTGCTGG+TGG | - | chr4_3:71407842-71407861 | Msa0660550:CDS | 70.0% | |
| CTGCTGCTGCTGCTGGTGGC+AGG | - | chr4_3:71407846-71407865 | Msa0660550:CDS | 70.0% | |
| GCTGCTGCTGCTGGTGGCAG+GGG | - | chr4_3:71407848-71407867 | Msa0660550:CDS | 70.0% | |
| TGCTGCTGGTGGCAGGGGCA+GGG | - | chr4_3:71407853-71407872 | Msa0660550:CDS | 70.0% | |
| ! | GCTGCGGCTGACGAGGCACT+TGG | - | chr4_3:71408031-71408050 | Msa0660550:CDS | 70.0% |
| CTGCTGCTGGTGGCAGGGGC+AGG | - | chr4_3:71407852-71407871 | Msa0660550:CDS | 75.0% | |
| GCTGCTGGTGGCAGGGGCAG+GGG | - | chr4_3:71407854-71407873 | Msa0660550:CDS | 75.0% | |
| GGTGGCAGGGGCAGGGGCAA+CGG | - | chr4_3:71407860-71407879 | Msa0660550:CDS | 75.0% | |
| AGGGGCAGGGGCAACGGCAG+AGG | - | chr4_3:71407866-71407885 | Msa0660550:CDS | 75.0% | |
| TGGGCGCTTCCCCGATGCCG+TGG | - | chr4_3:71408387-71408406 | Msa0660550:CDS | 75.0% | |
| CTGCTGCTGGTGGCAGGGGC+AGG | - | chr4_3:71407852-71407871 | Msa0660550:CDS | 75.0% | |
| GCTGCTGGTGGCAGGGGCAG+GGG | - | chr4_3:71407854-71407873 | Msa0660550:CDS | 75.0% | |
| GGTGGCAGGGGCAGGGGCAA+CGG | - | chr4_3:71407860-71407879 | Msa0660550:CDS | 75.0% | |
| AGGGGCAGGGGCAACGGCAG+AGG | - | chr4_3:71407866-71407885 | Msa0660550:CDS | 75.0% | |
| TGGGCGCTTCCCCGATGCCG+TGG | - | chr4_3:71408387-71408406 | Msa0660550:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 71407605 | 71408635 | 71407605 | ID=Msa0660550;Name=Msa0660550 |
| chr4_3 | mRNA | 71407605 | 71408635 | 71407605 | ID=Msa0660550-mRNA-1;Parent=Msa0660550;Name=Msa0660550-mRNA-1;_AED=0.45;_eAED=0.51;_QI=0|0|0|1|0.75|0.6|5|0|267 |
| chr4_3 | exon | 71408506 | 71408635 | 71408506 | ID=Msa0660550-mRNA-1:exon:21395;Parent=Msa0660550-mRNA-1 |
| chr4_3 | exon | 71408170 | 71408418 | 71408170 | ID=Msa0660550-mRNA-1:exon:21394;Parent=Msa0660550-mRNA-1 |
| chr4_3 | exon | 71407995 | 71408082 | 71407995 | ID=Msa0660550-mRNA-1:exon:21393;Parent=Msa0660550-mRNA-1 |
| chr4_3 | exon | 71407722 | 71407961 | 71407722 | ID=Msa0660550-mRNA-1:exon:21392;Parent=Msa0660550-mRNA-1 |
| chr4_3 | exon | 71407605 | 71407701 | 71407605 | ID=Msa0660550-mRNA-1:exon:21391;Parent=Msa0660550-mRNA-1 |
| chr4_3 | CDS | 71408506 | 71408635 | 71408506 | ID=Msa0660550-mRNA-1:cds;Parent=Msa0660550-mRNA-1 |
| chr4_3 | CDS | 71408170 | 71408418 | 71408170 | ID=Msa0660550-mRNA-1:cds;Parent=Msa0660550-mRNA-1 |
| chr4_3 | CDS | 71407995 | 71408082 | 71407995 | ID=Msa0660550-mRNA-1:cds;Parent=Msa0660550-mRNA-1 |
| chr4_3 | CDS | 71407722 | 71407961 | 71407722 | ID=Msa0660550-mRNA-1:cds;Parent=Msa0660550-mRNA-1 |
| chr4_3 | CDS | 71407605 | 71407701 | 71407605 | ID=Msa0660550-mRNA-1:cds;Parent=Msa0660550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
