AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0315480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315480 MtrunA17_Chr2g0286341 93.651 189 12 0 1 189 1 189 3.19e-123 345
Msa0315480 MtrunA17_Chr4g0066721 61.905 147 55 1 21 166 31 177 3.44e-60 186
Msa0315480 MtrunA17_Chr7g0268681 42.857 182 93 3 11 189 17 190 6.52e-43 142
Msa0315480 MtrunA17_Chr8g0381001 36.552 145 89 2 25 167 28 171 1.56e-24 95.1
Msa0315480 MtrunA17_Chr4g0066711 37.692 130 76 2 62 187 56 184 1.53e-22 89.7
Msa0315480 MtrunA17_Chr2g0303151 31.579 152 101 3 25 174 29 179 6.03e-16 72.4
Msa0315480 MtrunA17_Chr4g0021111 30.128 156 94 3 23 178 8 148 5.38e-14 66.6
Msa0315480 MtrunA17_Chr7g0217691 32.335 167 99 4 25 187 30 186 3.29e-13 65.1
Msa0315480 MtrunA17_Chr7g0251531 27.778 162 104 2 26 184 33 184 7.24e-12 61.2
Msa0315480 MtrunA17_Chr4g0042551 25.444 169 110 3 25 188 61 218 3.95e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315480 AT4G15630.1 48.108 185 88 2 1 184 12 189 3.07e-51 163
Msa0315480 AT4G15620.1 46.486 185 91 4 1 184 12 189 3.12e-47 153
Msa0315480 AT4G15610.1 34.194 155 87 5 22 168 25 172 1.04e-19 82.8
Msa0315480 AT3G06390.1 34.815 135 81 2 25 156 39 169 2.17e-18 79.3
Msa0315480 AT5G44550.1 30.719 153 101 3 25 174 20 170 5.37e-14 67.8
Msa0315480 AT4G15610.2 36.170 94 57 1 78 168 23 116 8.95e-13 63.2
Msa0315480 AT4G20390.1 33.088 136 88 3 25 158 20 154 9.27e-13 64.3
Msa0315480 AT1G14160.1 29.091 165 107 3 25 187 53 209 1.25e-12 64.3
Msa0315480 AT5G15290.1 31.126 151 86 4 24 170 29 165 6.82e-12 61.6

Find 50 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGTTTGATTTCACTTCT+TGG 0.164285 2_4:+11902711 Msa0315480:CDS
GTTGAATGAAATTTAAGATA+TGG 0.255413 2_4:-11897044 None:intergenic
TTCAGATTCTTTACCACCTT+TGG 0.287155 2_4:+11897416 Msa0315480:CDS
GAACTTGTAGTTTGGTTCTA+AGG 0.290000 2_4:+11897313 Msa0315480:CDS
TTCATTATTGCTCTTGCAAA+TGG 0.304694 2_4:+11902507 Msa0315480:CDS
AATGGAGCTGCCTGGGCTAT+TGG 0.310330 2_4:+11902603 Msa0315480:CDS
AAAGAATCTGAAATCTTAAC+TGG 0.325446 2_4:-11897405 None:intergenic
AGAACCTAGATGCATGCTTT+TGG 0.342267 2_4:+11902789 Msa0315480:exon
CTCTGGCAATGGAGCTGCCT+GGG 0.353297 2_4:+11902596 Msa0315480:CDS
GGTTCTAAGGCTTTGTGCCT+TGG 0.356571 2_4:+11897326 Msa0315480:CDS
TCTCTGGCAATGGAGCTGCC+TGG 0.366116 2_4:+11902595 Msa0315480:CDS
ACTAGAAGGAACTTGTAGTT+TGG 0.383357 2_4:+11897305 Msa0315480:CDS
TGCCTTGGTTCTAACACTTA+CGG 0.396121 2_4:+11897341 Msa0315480:CDS
ATGCACACGTTACATCTTGC+TGG 0.398008 2_4:+11896917 Msa0315480:five_prime_UTR
GACTCTACTTGACGCAATAA+TGG 0.402079 2_4:+11902560 Msa0315480:CDS
TATTGCCACTTAGCAGTAAC+AGG 0.403955 2_4:-11897444 None:intergenic
TCAAAGTAGTAAAGAGTTGA+AGG 0.416149 2_4:+11897260 Msa0315480:CDS
ATGGTAGCTTTGCTCTTCTC+TGG 0.423813 2_4:+11902579 Msa0315480:CDS
TTATTTCTTTGTAACATTTG+TGG 0.429807 2_4:+11902936 Msa0315480:three_prime_UTR
TTTCATTCAACATAAATAAG+TGG 0.447907 2_4:+11897056 Msa0315480:five_prime_UTR
GCTTTGCTCTTCTCTGGCAA+TGG 0.475961 2_4:+11902585 Msa0315480:CDS
TCATTATTGCTCTTGCAAAT+GGG 0.478620 2_4:+11902508 Msa0315480:CDS
CAAATGGGCATAAAAGCAAA+TGG 0.489917 2_4:+11902523 Msa0315480:CDS
AGATCTTGTCAATAATTGCT+AGG 0.499264 2_4:-11897094 None:intergenic
TGACATAATAATGTTGATGT+TGG 0.509693 2_4:+11902912 Msa0315480:three_prime_UTR
TAGAAATGTGATTAAAATGA+TGG 0.510564 2_4:-11896945 None:intergenic
ATTGGTGTCCTTGCTGAGAA+AGG 0.524437 2_4:+11902621 Msa0315480:CDS
AAGATGAACATAAGAGGCAT+TGG 0.526096 2_4:-11896970 None:intergenic
TAAAGAGTTGAAGGAAATTG+TGG 0.527493 2_4:+11897269 Msa0315480:CDS
AAGCAAATGGTTAGTGACAT+TGG 0.532245 2_4:+11902536 Msa0315480:CDS
AAGGAAACTCACATGTGCTA+TGG 0.533697 2_4:+11902640 Msa0315480:CDS
GTGGTAAAGTCTTCACTAGA+AGG 0.536766 2_4:+11897291 Msa0315480:CDS
TGATAAAAGATGAACATAAG+AGG 0.541084 2_4:-11896976 None:intergenic
CTTCGATGAAGTCTCAAAGC+AGG 0.542570 2_4:-11902765 None:intergenic
GTCTCCAAAAGCATGCATCT+AGG 0.543676 2_4:-11902793 None:intergenic
GATCTTGTCAATAATTGCTA+GGG 0.545108 2_4:-11897093 None:intergenic
AGCAAGGACACCAATAGCCC+AGG 0.569795 2_4:-11902613 None:intergenic
TCAAACATGCAGCAGCAGCT+TGG 0.577464 2_4:-11902698 None:intergenic
ATGTTCCTGTTACTGCTAAG+TGG 0.581337 2_4:+11897439 Msa0315480:CDS
GTGAGTTTCCTTTCTCAGCA+AGG 0.583749 2_4:-11902629 None:intergenic
ACTCTTCTGAATATATCAGA+TGG 0.600770 2_4:-11897202 None:intergenic
AAATGTGATTAAAATGATGG+AGG 0.610594 2_4:-11896942 None:intergenic
CAGGAAGCATCACAAGAGAG+AGG 0.623721 2_4:-11902746 None:intergenic
GCAGTAACAGGAACATCCAA+AGG 0.629483 2_4:-11897432 None:intergenic
AATCTTAACTGGAACAACTG+TGG 0.642596 2_4:-11897394 None:intergenic
AGAGTTGAAGGAAATTGTGG+TGG 0.665080 2_4:+11897272 Msa0315480:CDS
AGCCGTAAGTGTTAGAACCA+AGG 0.675160 2_4:-11897343 None:intergenic
CATAAATAAGTGGTTCATCG+CGG 0.676765 2_4:+11897066 Msa0315480:five_prime_UTR
GTAACAGGAACATCCAAAGG+TGG 0.698112 2_4:-11897429 None:intergenic
AAGAGCAATAATGAAAGACA+AGG 0.698566 2_4:-11902499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATGTAAAATAAATAA+GGG - chr2_4:11897807-11897826 None:intergenic 10.0%
!! AAAATGATGTAAAATAAATA+AGG - chr2_4:11897808-11897827 None:intergenic 10.0%
!! AACTATATACAAAAAAAAAT+TGG + chr2_4:11897913-11897932 Msa0315480:intron 10.0%
!!! TTTTAATATATTTTCTTGTT+AGG - chr2_4:11898386-11898405 None:intergenic 10.0%
!! TAATAAAAATGAAAAAAATC+TGG + chr2_4:11899184-11899203 Msa0315480:intron 10.0%
!! TAAAAAAGATTAAAAAATTC+TGG + chr2_4:11899270-11899289 Msa0315480:intron 10.0%
!!! TTCTAAAAAAATTAAAATTC+TGG + chr2_4:11899314-11899333 Msa0315480:intron 10.0%
!!! TTTAAATTTTAATGAAATTC+TGG + chr2_4:11899357-11899376 Msa0315480:intron 10.0%
!! ATATATACTAATCAAAATTT+CGG + chr2_4:11899747-11899766 Msa0315480:intron 10.0%
!!! TTTAAATTTTAATGAAATTC+TGG + chr2_4:11899357-11899376 Msa0315480:intron 10.0%
!! ATATATACTAATCAAAATTT+CGG + chr2_4:11899747-11899766 Msa0315480:intron 10.0%
!! GAAAAAAAATTAAAAAAATC+TGG - chr2_4:11900482-11900501 None:intergenic 10.0%
!! AAAAAAAATTGAAAAAATTC+TGG - chr2_4:11900611-11900630 None:intergenic 10.0%
!! TTTAAAAACACATAAATTAA+AGG + chr2_4:11901265-11901284 Msa0315480:intron 10.0%
!! TTAAAAACACATAAATTAAA+GGG + chr2_4:11901266-11901285 Msa0315480:intron 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr2_4:11901662-11901681 Msa0315480:intron 10.0%
!!! ATAAGTAATTTTTTTTTTGT+AGG + chr2_4:11901723-11901742 Msa0315480:intron 10.0%
!!! TAAGTAATTTTTTTTTTGTA+GGG + chr2_4:11901724-11901743 Msa0315480:intron 10.0%
!!! TTCTAGTTTAATTTAATTTA+GGG - chr2_4:11901827-11901846 None:intergenic 10.0%
!!! ATTCTAGTTTAATTTAATTT+AGG - chr2_4:11901828-11901847 None:intergenic 10.0%
!! GAAAAAAAAAAAAAGTAAAA+TGG - chr2_4:11902073-11902092 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:11898874-11898893 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:11898874-11898893 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:11898874-11898893 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:11898874-11898893 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr2_4:11898881-11898900 None:intergenic 100.0%
!!! TACTTTTGTTTACTATTTTT+AGG + chr2_4:11897224-11897243 Msa0315480:five_prime_UTR 15.0%
!! AAAGAAATACTTAATGTAAT+TGG - chr2_4:11897775-11897794 None:intergenic 15.0%
!! TATATACAAAAAAAAATTGG+TGG + chr2_4:11897916-11897935 Msa0315480:intron 15.0%
!!! AAAATTTTACAAAGAAAATG+GGG - chr2_4:11898167-11898186 None:intergenic 15.0%
!!! CAAAATTTTACAAAGAAAAT+GGG - chr2_4:11898168-11898187 None:intergenic 15.0%
!! AAATAGCATAATAAAATGAA+TGG - chr2_4:11898524-11898543 None:intergenic 15.0%
!!! TGTATTTAAAATTTATGCTA+TGG - chr2_4:11898569-11898588 None:intergenic 15.0%
!! TAATAAATAATTGATGTGAT+TGG - chr2_4:11898661-11898680 None:intergenic 15.0%
!! GAAAAAAATAATGAGTAAAT+AGG + chr2_4:11898846-11898865 Msa0315480:intron 15.0%
!!! ATTTTTCTGTTAACTATTTA+CGG + chr2_4:11898997-11899016 Msa0315480:intron 15.0%
!! TATTTATAAACCAAGAATAA+GGG + chr2_4:11899557-11899576 Msa0315480:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr2_4:11899633-11899652 Msa0315480:intron 15.0%
!! TATTTATAAACCAAGAATAA+GGG + chr2_4:11899557-11899576 Msa0315480:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr2_4:11899633-11899652 Msa0315480:intron 15.0%
!! GAAAAATAATGAAAAAATTC+TGG - chr2_4:11899241-11899260 None:intergenic 15.0%
!! CTGAAAAAATTTAAAAATTC+TGG - chr2_4:11900435-11900454 None:intergenic 15.0%
!!! TTTTTTAATTTTTCAAGTTC+AGG + chr2_4:11900625-11900644 Msa0315480:intron 15.0%
!!! TTTTTAATTTTTCAAGTTCA+GGG + chr2_4:11900626-11900645 Msa0315480:intron 15.0%
!!! ACATTATTTTTTGAGTAAAT+AGG - chr2_4:11900833-11900852 None:intergenic 15.0%
!!! TATTAAAGAAAATTTTGTAG+CGG - chr2_4:11901220-11901239 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr2_4:11901412-11901431 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr2_4:11901531-11901550 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr2_4:11901690-11901709 Msa0315480:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr2_4:11901691-11901710 Msa0315480:intron 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr2_4:11901753-11901772 Msa0315480:intron 15.0%
!!! TAATTTTTCTTTCGTTTATT+AGG + chr2_4:11902436-11902455 Msa0315480:intron 15.0%
!!! AATTTTTTTTGGATTAAACA+AGG - chr2_4:11902818-11902837 None:intergenic 15.0%
!!! ATCAATCACATAATTTTTTT+TGG - chr2_4:11902829-11902848 None:intergenic 15.0%
!! TAGAAATGTGATTAAAATGA+TGG - chr2_4:11896948-11896967 None:intergenic 20.0%
!!! GTTGAATGAAATTTAAGATA+TGG - chr2_4:11897047-11897066 None:intergenic 20.0%
!! TTTCATTCAACATAAATAAG+TGG + chr2_4:11897056-11897075 Msa0315480:five_prime_UTR 20.0%
!!! TTACTATTTTTAGGAAGTAA+TGG + chr2_4:11897233-11897252 Msa0315480:exon 20.0%
!! TCTCAATGCATATAATTAAT+GGG - chr2_4:11897612-11897631 None:intergenic 20.0%
!! TTCTCAATGCATATAATTAA+TGG - chr2_4:11897613-11897632 None:intergenic 20.0%
!!! ATGTTCAAATTACTTTTGTT+TGG + chr2_4:11897635-11897654 Msa0315480:intron 20.0%
!! TAAGAAAATTGAGACAATAA+AGG - chr2_4:11897665-11897684 None:intergenic 20.0%
!!! CTCTTTTTATAAGACTTTTT+TGG + chr2_4:11897744-11897763 Msa0315480:intron 20.0%
!! CAATGCATATAATATATGTA+GGG - chr2_4:11897964-11897983 None:intergenic 20.0%
!! ACAATGCATATAATATATGT+AGG - chr2_4:11897965-11897984 None:intergenic 20.0%
!! TCACAAAAGTTGTTAAAAAA+TGG - chr2_4:11898073-11898092 None:intergenic 20.0%
!!! GCAAAATTTTACAAAGAAAA+TGG - chr2_4:11898169-11898188 None:intergenic 20.0%
!!! AAAATGGTTCTATATTAACA+AGG + chr2_4:11898242-11898261 Msa0315480:intron 20.0%
!!! AACTAGCTTTAAATCTTATA+TGG + chr2_4:11898442-11898461 Msa0315480:intron 20.0%
!! ATAGTTAACAGAAAAATTGA+CGG - chr2_4:11898994-11899013 None:intergenic 20.0%
!! ATATAAGTGTAAAATTTCAG+GGG - chr2_4:11899038-11899057 None:intergenic 20.0%
!! CATATAAGTGTAAAATTTCA+GGG - chr2_4:11899039-11899058 None:intergenic 20.0%
!!! ATTCTGGAAAATAAAAATTC+TGG + chr2_4:11899373-11899392 Msa0315480:intron 20.0%
!! ATTCTCGAAAATAAAAATTC+TGG + chr2_4:11899398-11899417 Msa0315480:intron 20.0%
!! CGAAAATAAAAATGAAATTC+TGG + chr2_4:11899451-11899470 Msa0315480:intron 20.0%
!! GTATTTATAAACCAAGAATA+AGG + chr2_4:11899556-11899575 Msa0315480:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr2_4:11899634-11899653 Msa0315480:intron 20.0%
!! TATAAATACACAAAAATTCC+CGG - chr2_4:11899655-11899674 None:intergenic 20.0%
!! ATAAATACACAAAAAGTTCT+CGG - chr2_4:11899680-11899699 None:intergenic 20.0%
!! TATTTATAAACCGAGAATAA+GGG + chr2_4:11899693-11899712 Msa0315480:intron 20.0%
!! TTAGTATATATATCGAACTT+AGG - chr2_4:11899738-11899757 None:intergenic 20.0%
!!! ATTCTGGAAAATAAAAATTC+TGG + chr2_4:11899373-11899392 Msa0315480:intron 20.0%
!! ATTCTCGAAAATAAAAATTC+TGG + chr2_4:11899398-11899417 Msa0315480:intron 20.0%
!! CGAAAATAAAAATGAAATTC+TGG + chr2_4:11899451-11899470 Msa0315480:intron 20.0%
!! GTATTTATAAACCAAGAATA+AGG + chr2_4:11899556-11899575 Msa0315480:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr2_4:11899634-11899653 Msa0315480:intron 20.0%
!! TATAAATACACAAAAATTCC+CGG - chr2_4:11899655-11899674 None:intergenic 20.0%
!! ATAAATACACAAAAAGTTCT+CGG - chr2_4:11899680-11899699 None:intergenic 20.0%
!! TATTTATAAACCGAGAATAA+GGG + chr2_4:11899693-11899712 Msa0315480:intron 20.0%
!! TTAGTATATATATCGAACTT+AGG - chr2_4:11899738-11899757 None:intergenic 20.0%
!!! TTTTAATTTTTCAAGTTCAG+GGG + chr2_4:11900627-11900646 Msa0315480:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG - chr2_4:11900700-11900719 None:intergenic 20.0%
!! AATATAAATGCGTTGAAAAT+GGG - chr2_4:11900938-11900957 None:intergenic 20.0%
!! AAATATAAATGCGTTGAAAA+TGG - chr2_4:11900939-11900958 None:intergenic 20.0%
!! TTTCAACGCATTTATATTTA+CGG + chr2_4:11900940-11900959 Msa0315480:intron 20.0%
!! ATGTTGTTATACAACTTTAA+AGG + chr2_4:11901087-11901106 Msa0315480:intron 20.0%
!!! TGATAATTAGTTTACAAAAG+AGG - chr2_4:11901132-11901151 None:intergenic 20.0%
!!! TAAAGGGTTAATTATGTTTT+TGG + chr2_4:11901282-11901301 Msa0315480:intron 20.0%
!! AAACAAATTTGGATTGAATA+AGG - chr2_4:11901401-11901420 None:intergenic 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG - chr2_4:11901811-11901830 None:intergenic 20.0%
!!! TTATTTCTTTGTAACATTTG+TGG + chr2_4:11902936-11902955 Msa0315480:three_prime_UTR 20.0%
! AAATGTGATTAAAATGATGG+AGG - chr2_4:11896945-11896964 None:intergenic 25.0%
! TGATAAAAGATGAACATAAG+AGG - chr2_4:11896979-11896998 None:intergenic 25.0%
! TGGAACAACATATCTAAAAA+CGG - chr2_4:11897027-11897046 None:intergenic 25.0%
!!! AATAGTGTTGATACCAAAAA+TGG - chr2_4:11897137-11897156 None:intergenic 25.0%
!!! AATGAAGATTGTTTTGCAAA+AGG - chr2_4:11897176-11897195 None:intergenic 25.0%
!! AAAGAATCTGAAATCTTAAC+TGG - chr2_4:11897408-11897427 None:intergenic 25.0%
! TTAAGAACATGATAGAAAGA+GGG - chr2_4:11897515-11897534 None:intergenic 25.0%
! ATTAAGAACATGATAGAAAG+AGG - chr2_4:11897516-11897535 None:intergenic 25.0%
! ATACAAAAAAAAATTGGTGG+TGG + chr2_4:11897919-11897938 Msa0315480:intron 25.0%
! AAATATCATTTCACAGTTGT+TGG - chr2_4:11898044-11898063 None:intergenic 25.0%
! AGTTAAAACATAATGTGAGT+AGG - chr2_4:11898109-11898128 None:intergenic 25.0%
!!! ACTTTTTCTCTCTATTGATT+TGG + chr2_4:11898126-11898145 Msa0315480:intron 25.0%
!!! CTTTTTCTCTCTATTGATTT+GGG + chr2_4:11898127-11898146 Msa0315480:intron 25.0%
!! TAAAATTTTGCTTGTCACAA+AGG + chr2_4:11898178-11898197 Msa0315480:intron 25.0%
! TCGTGATGTTAATTACTTAA+TGG + chr2_4:11898707-11898726 Msa0315480:intron 25.0%
! AATGAAATGTTATAGAAGCA+TGG + chr2_4:11898788-11898807 Msa0315480:intron 25.0%
! TATAAGTGTAAAATTTCAGG+GGG - chr2_4:11899037-11899056 None:intergenic 25.0%
! GCATATAAGTGTAAAATTTC+AGG - chr2_4:11899040-11899059 None:intergenic 25.0%
!!! CATATTTTTTCCCTTATTCT+TGG - chr2_4:11899570-11899589 None:intergenic 25.0%
! ATACATAAAAAACCTAAGCT+CGG - chr2_4:11899605-11899624 None:intergenic 25.0%
! GTATTTATAAACCGAGAATA+AGG + chr2_4:11899692-11899711 Msa0315480:intron 25.0%
!!! TGTATTTTTTCCCTTATTCT+CGG - chr2_4:11899706-11899725 None:intergenic 25.0%
!!! CATATTTTTTCCCTTATTCT+TGG - chr2_4:11899570-11899589 None:intergenic 25.0%
! ATACATAAAAAACCTAAGCT+CGG - chr2_4:11899605-11899624 None:intergenic 25.0%
! GTATTTATAAACCGAGAATA+AGG + chr2_4:11899692-11899711 Msa0315480:intron 25.0%
!!! TGTATTTTTTCCCTTATTCT+CGG - chr2_4:11899706-11899725 None:intergenic 25.0%
!!! TTTAATTTTTCAAGTTCAGG+GGG + chr2_4:11900628-11900647 Msa0315480:intron 25.0%
! CACATAAGTGTAAAATTTCA+GGG + chr2_4:11900658-11900677 Msa0315480:intron 25.0%
! ACATAAGTGTAAAATTTCAG+GGG + chr2_4:11900659-11900678 Msa0315480:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr2_4:11900703-11900722 Msa0315480:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG + chr2_4:11900739-11900758 Msa0315480:intron 25.0%
! TTTGACAAACATTGCAATTT+CGG + chr2_4:11900796-11900815 Msa0315480:intron 25.0%
! AACAAAATACTGTGTATCTA+TGG - chr2_4:11900903-11900922 None:intergenic 25.0%
! ATATAAATGCGTTGAAAATG+GGG - chr2_4:11900937-11900956 None:intergenic 25.0%
!!! TAAAGGTAACTACTTTTTGA+TGG + chr2_4:11901104-11901123 Msa0315480:intron 25.0%
!!! AAAGGTAACTACTTTTTGAT+GGG + chr2_4:11901105-11901124 Msa0315480:intron 25.0%
! AAGTAAAGACTAAACTTACA+AGG - chr2_4:11901325-11901344 None:intergenic 25.0%
!!! GAGTGCAAAATTTTTTTGTA+GGG - chr2_4:11901369-11901388 None:intergenic 25.0%
!!! TGAGTGCAAAATTTTTTTGT+AGG - chr2_4:11901370-11901389 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr2_4:11901466-11901485 Msa0315480:intron 25.0%
!!! TTTTGCGATATTTTTTTCAG+AGG - chr2_4:11901493-11901512 None:intergenic 25.0%
! AAGTAAGGACTAAAATTAGA+AGG + chr2_4:11901768-11901787 Msa0315480:intron 25.0%
! AAATTTGATTGTGCATACAT+AGG + chr2_4:11902125-11902144 Msa0315480:intron 25.0%
!! CTCGTTTAATCAACTATTTT+AGG - chr2_4:11902266-11902285 None:intergenic 25.0%
!! TTCGTTTATTAGGTATTTTG+TGG + chr2_4:11902446-11902465 Msa0315480:intron 25.0%
! TGACATAATAATGTTGATGT+TGG + chr2_4:11902912-11902931 Msa0315480:three_prime_UTR 25.0%
!!! GTTTCTACTTTTTGTATTTC+TGG + chr2_4:11903019-11903038 Msa0315480:three_prime_UTR 25.0%
GATCTTGTCAATAATTGCTA+GGG - chr2_4:11897096-11897115 None:intergenic 30.0%
AGATCTTGTCAATAATTGCT+AGG - chr2_4:11897097-11897116 None:intergenic 30.0%
!! ATTTGTTACCCAACCATTTT+TGG + chr2_4:11897121-11897140 Msa0315480:five_prime_UTR 30.0%
TGTTGATACCAAAAATGGTT+GGG - chr2_4:11897132-11897151 None:intergenic 30.0%
ACTCTTCTGAATATATCAGA+TGG - chr2_4:11897205-11897224 None:intergenic 30.0%
!!! CTATTTTTAGGAAGTAATGG+AGG + chr2_4:11897236-11897255 Msa0315480:exon 30.0%
TCAAAGTAGTAAAGAGTTGA+AGG + chr2_4:11897260-11897279 Msa0315480:CDS 30.0%
TAAAGAGTTGAAGGAAATTG+TGG + chr2_4:11897269-11897288 Msa0315480:CDS 30.0%
GGGAAATATAACTTACACAT+AGG - chr2_4:11897478-11897497 None:intergenic 30.0%
AGAGGGAACAATCTATTTAA+GGG - chr2_4:11897498-11897517 None:intergenic 30.0%
AAGAGGGAACAATCTATTTA+AGG - chr2_4:11897499-11897518 None:intergenic 30.0%
TAAACTAACTCTTGCTCTTA+AGG + chr2_4:11897868-11897887 Msa0315480:intron 30.0%
AACACAACTCTTTAGCAAAA+TGG + chr2_4:11898226-11898245 Msa0315480:intron 30.0%
GGTTCTATATTAACAAGGTT+CGG + chr2_4:11898247-11898266 Msa0315480:intron 30.0%
! GGACAATTTTGTTGCATTTT+TGG - chr2_4:11898503-11898522 None:intergenic 30.0%
TTTGACAAACCTTGCAATTT+CGG - chr2_4:11898901-11898920 None:intergenic 30.0%
TTGATGTTTCGTTAACTACA+GGG - chr2_4:11900768-11900787 None:intergenic 30.0%
ATTGATGTTTCGTTAACTAC+AGG - chr2_4:11900767-11900786 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG - chr2_4:11900738-11900757 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG - chr2_4:11900707-11900726 None:intergenic 30.0%
ATAAGTGTAAAATTTCAGGG+GGG - chr2_4:11900661-11900680 None:intergenic 30.0%
TGTATTTATAAACCGAGCTT+AGG + chr2_4:11899590-11899609 Msa0315480:intron 30.0%
ATGTCGAAATTTCGAAATTC+TGG - chr2_4:11899795-11899814 None:intergenic 30.0%
TGTATTTATAAACCGAGCTT+AGG + chr2_4:11899590-11899609 Msa0315480:intron 30.0%
ATGTCGAAATTTCGAAATTC+TGG - chr2_4:11899795-11899814 None:intergenic 30.0%
GCACATAAGTGTAAAATTTC+AGG + chr2_4:11900657-11900676 Msa0315480:intron 30.0%
CATAAGTGTAAAATTTCAGG+GGG + chr2_4:11900660-11900679 Msa0315480:intron 30.0%
ATAAGTGTAAAATTTCAGGG+GGG + chr2_4:11900661-11900680 Msa0315480:intron 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr2_4:11900707-11900726 Msa0315480:intron 30.0%
GATTAACGTTATGCAATTTC+AGG + chr2_4:11900738-11900757 Msa0315480:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG + chr2_4:11900740-11900759 Msa0315480:intron 30.0%
ATTGATGTTTCGTTAACTAC+AGG + chr2_4:11900767-11900786 Msa0315480:intron 30.0%
TTGATGTTTCGTTAACTACA+GGG + chr2_4:11900768-11900787 Msa0315480:intron 30.0%
TTGACAAACATTGCAATTTC+GGG + chr2_4:11900797-11900816 Msa0315480:intron 30.0%
GCATTTATATTTACGGTTAC+CGG + chr2_4:11900947-11900966 Msa0315480:intron 30.0%
!! AAGTATGGTTGAGTTTTATG+GGG - chr2_4:11901025-11901044 None:intergenic 30.0%
!! CAAGTATGGTTGAGTTTTAT+GGG - chr2_4:11901026-11901045 None:intergenic 30.0%
! ACAAGTATGGTTGAGTTTTA+TGG - chr2_4:11901027-11901046 None:intergenic 30.0%
CTTATTAATGGCAACAAGTA+TGG - chr2_4:11901040-11901059 None:intergenic 30.0%
! TAGAAGGTCGCAATTTTATA+TGG + chr2_4:11901784-11901803 Msa0315480:intron 30.0%
CATTTAACCCACTAAAAAGA+GGG - chr2_4:11902195-11902214 None:intergenic 30.0%
TCATTTAACCCACTAAAAAG+AGG - chr2_4:11902196-11902215 None:intergenic 30.0%
!!! TCTTTTTAGTGGGTTAAATG+AGG + chr2_4:11902195-11902214 Msa0315480:intron 30.0%
! TTTTAGGCTGATTGAATTTG+AGG - chr2_4:11902250-11902269 None:intergenic 30.0%
AATAGTTGATTAAACGAGCT+AGG + chr2_4:11902268-11902287 Msa0315480:intron 30.0%
ATAGTTGATTAAACGAGCTA+GGG + chr2_4:11902269-11902288 Msa0315480:intron 30.0%
TTGGCTAAAGTAGTCATATT+TGG + chr2_4:11902316-11902335 Msa0315480:intron 30.0%
TGGCTAAAGTAGTCATATTT+GGG + chr2_4:11902317-11902336 Msa0315480:intron 30.0%
GTAGTAAGATGTCAAAAACA+TGG - chr2_4:11902351-11902370 None:intergenic 30.0%
! GTTTATTAGGTATTTTGTGG+TGG + chr2_4:11902449-11902468 Msa0315480:intron 30.0%
AAGAGCAATAATGAAAGACA+AGG - chr2_4:11902502-11902521 None:intergenic 30.0%
TTCATTATTGCTCTTGCAAA+TGG + chr2_4:11902507-11902526 Msa0315480:CDS 30.0%
TCATTATTGCTCTTGCAAAT+GGG + chr2_4:11902508-11902527 Msa0315480:CDS 30.0%
! AAGATGAACATAAGAGGCAT+TGG - chr2_4:11896973-11896992 None:intergenic 35.0%
!!! AGTAGCTGGAAGTTTTTTGT+TGG - chr2_4:11897002-11897021 None:intergenic 35.0%
ATCTAAAAACGGTTAGTAGC+TGG - chr2_4:11897016-11897035 None:intergenic 35.0%
CATAAATAAGTGGTTCATCG+CGG + chr2_4:11897066-11897085 Msa0315480:five_prime_UTR 35.0%
! GTGTTGATACCAAAAATGGT+TGG - chr2_4:11897133-11897152 None:intergenic 35.0%
ACTAGAAGGAACTTGTAGTT+TGG + chr2_4:11897305-11897324 Msa0315480:CDS 35.0%
!! GAACTTGTAGTTTGGTTCTA+AGG + chr2_4:11897313-11897332 Msa0315480:CDS 35.0%
AATCTTAACTGGAACAACTG+TGG - chr2_4:11897397-11897416 None:intergenic 35.0%
TTCAGATTCTTTACCACCTT+TGG + chr2_4:11897416-11897435 Msa0315480:CDS 35.0%
!! AAAAAAAAATTGGTGGTGGC+CGG + chr2_4:11897923-11897942 Msa0315480:intron 35.0%
! CGAACTTAACTTAGTTGGTA+GGG - chr2_4:11897988-11898007 None:intergenic 35.0%
TTGACAAACCTTGCAATTTC+GGG - chr2_4:11898900-11898919 None:intergenic 35.0%
TGATGTTTCGTTAACTACAG+GGG - chr2_4:11900769-11900788 None:intergenic 35.0%
AACGTTATGCAATTTCAGGA+GGG - chr2_4:11898955-11898974 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+AGG - chr2_4:11900741-11900760 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG - chr2_4:11900708-11900727 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG - chr2_4:11900706-11900725 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr2_4:11900706-11900725 Msa0315480:intron 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr2_4:11900708-11900727 Msa0315480:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG + chr2_4:11900741-11900760 Msa0315480:intron 35.0%
TGATGTTTCGTTAACTACAG+GGG + chr2_4:11900769-11900788 Msa0315480:intron 35.0%
TGACAAACATTGCAATTTCG+GGG + chr2_4:11900798-11900817 Msa0315480:intron 35.0%
ATACTGTGTATCTATGGAGA+AGG - chr2_4:11900897-11900916 None:intergenic 35.0%
ACCAAATAGAAATGCATGGT+TGG - chr2_4:11900983-11901002 None:intergenic 35.0%
ACCATGCATTTCTATTTGGT+TGG + chr2_4:11900983-11901002 Msa0315480:intron 35.0%
! ATTTCTATTTGGTTGGCTGA+AGG + chr2_4:11900990-11901009 Msa0315480:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr2_4:11901309-11901328 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr2_4:11901310-11901329 None:intergenic 35.0%
! CAAGTTTAGAACACTATGAC+AGG - chr2_4:11901628-11901647 None:intergenic 35.0%
!!! TTTTAGTGGGTTAAATGAGG+CGG + chr2_4:11902198-11902217 Msa0315480:intron 35.0%
!!! TGAATTTGAGGTTTTGAACC+TGG - chr2_4:11902238-11902257 None:intergenic 35.0%
AAAGTTAGAGGTGGAAAAAC+GGG - chr2_4:11902298-11902317 None:intergenic 35.0%
CAAAGTTAGAGGTGGAAAAA+CGG - chr2_4:11902299-11902318 None:intergenic 35.0%
ACTACTTTAGCCAAAGTTAG+AGG - chr2_4:11902310-11902329 None:intergenic 35.0%
CAAATGGGCATAAAAGCAAA+TGG + chr2_4:11902523-11902542 Msa0315480:CDS 35.0%
AAGCAAATGGTTAGTGACAT+TGG + chr2_4:11902536-11902555 Msa0315480:CDS 35.0%
! GCATGTTTGATTTCACTTCT+TGG + chr2_4:11902711-11902730 Msa0315480:CDS 35.0%
AGAGTTGAAGGAAATTGTGG+TGG + chr2_4:11897272-11897291 Msa0315480:CDS 40.0%
GTGGTAAAGTCTTCACTAGA+AGG + chr2_4:11897291-11897310 Msa0315480:CDS 40.0%
!! TGCCTTGGTTCTAACACTTA+CGG + chr2_4:11897341-11897360 Msa0315480:CDS 40.0%
ATGTTCCTGTTACTGCTAAG+TGG + chr2_4:11897439-11897458 Msa0315480:CDS 40.0%
! TATTGCCACTTAGCAGTAAC+AGG - chr2_4:11897447-11897466 None:intergenic 40.0%
!! AAAAAAAATTGGTGGTGGCC+GGG + chr2_4:11897924-11897943 Msa0315480:intron 40.0%
GCGAACTTAACTTAGTTGGT+AGG - chr2_4:11897989-11898008 None:intergenic 40.0%
CATCGCGAACTTAACTTAGT+TGG - chr2_4:11897993-11898012 None:intergenic 40.0%
! GGTTCGGCTCTAGTATTTAT+AGG + chr2_4:11898263-11898282 Msa0315480:intron 40.0%
AATCGATCATATATGCCCCA+CGG + chr2_4:11898295-11898314 Msa0315480:intron 40.0%
TGACAAACCTTGCAATTTCG+GGG - chr2_4:11898899-11898918 None:intergenic 40.0%
ATGTTTCGTTAACTACAGGG+GGG - chr2_4:11900771-11900790 None:intergenic 40.0%
GATGTTTCGTTAACTACAGG+GGG - chr2_4:11900770-11900789 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG - chr2_4:11900709-11900728 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr2_4:11900709-11900728 Msa0315480:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG + chr2_4:11900742-11900761 Msa0315480:intron 40.0%
GATGTTTCGTTAACTACAGG+GGG + chr2_4:11900770-11900789 Msa0315480:intron 40.0%
GACAAACATTGCAATTTCGG+GGG + chr2_4:11900799-11900818 Msa0315480:intron 40.0%
ACAAACATTGCAATTTCGGG+GGG + chr2_4:11900800-11900819 Msa0315480:intron 40.0%
GTGTATCTATGGAGAAGGAA+TGG - chr2_4:11900892-11900911 None:intergenic 40.0%
GCCAACCATGCATTTCTATT+TGG + chr2_4:11900979-11900998 Msa0315480:intron 40.0%
GCCAACCAAATAGAAATGCA+TGG - chr2_4:11900987-11901006 None:intergenic 40.0%
GTGAGTCGCGATCTTATTAA+TGG - chr2_4:11901052-11901071 None:intergenic 40.0%
!! TGTGGCGGTTATTTCTAAAG+TGG + chr2_4:11901905-11901924 Msa0315480:intron 40.0%
!! GTGGCGGTTATTTCTAAAGT+GGG + chr2_4:11901906-11901925 Msa0315480:intron 40.0%
GCATACATAGGCTTGACAAA+TGG + chr2_4:11902137-11902156 Msa0315480:intron 40.0%
TAACCCACTAAAAAGAGGGA+CGG - chr2_4:11902191-11902210 None:intergenic 40.0%
! CGTTTTTCCACCTCTAACTT+TGG + chr2_4:11902297-11902316 Msa0315480:intron 40.0%
ACTTTAGCCAAAGTTAGAGG+TGG - chr2_4:11902307-11902326 None:intergenic 40.0%
GACTCTACTTGACGCAATAA+TGG + chr2_4:11902560-11902579 Msa0315480:CDS 40.0%
AAGGAAACTCACATGTGCTA+TGG + chr2_4:11902640-11902659 Msa0315480:CDS 40.0%
! AGAACCTAGATGCATGCTTT+TGG + chr2_4:11902789-11902808 Msa0315480:exon 40.0%
ATGCACACGTTACATCTTGC+TGG + chr2_4:11896917-11896936 Msa0315480:five_prime_UTR 45.0%
AGCCGTAAGTGTTAGAACCA+AGG - chr2_4:11897346-11897365 None:intergenic 45.0%
GTAACAGGAACATCCAAAGG+TGG - chr2_4:11897432-11897451 None:intergenic 45.0%
GCAGTAACAGGAACATCCAA+AGG - chr2_4:11897435-11897454 None:intergenic 45.0%
ATCGATCATATATGCCCCAC+GGG + chr2_4:11898296-11898315 Msa0315480:intron 45.0%
ACAAACCTTGCAATTTCGGG+GGG - chr2_4:11898897-11898916 None:intergenic 45.0%
GACAAACCTTGCAATTTCGG+GGG - chr2_4:11898898-11898917 None:intergenic 45.0%
CAAACATTGCAATTTCGGGG+GGG + chr2_4:11900801-11900820 Msa0315480:intron 45.0%
!! GCGGTTATTTCTAAAGTGGG+TGG + chr2_4:11901909-11901928 Msa0315480:intron 45.0%
ATAGGCTTGACAAATGGCCA+AGG + chr2_4:11902143-11902162 Msa0315480:intron 45.0%
TAGGCTTGACAAATGGCCAA+GGG + chr2_4:11902144-11902163 Msa0315480:intron 45.0%
AACCCACTAAAAAGAGGGAC+GGG - chr2_4:11902190-11902209 None:intergenic 45.0%
! ATGGTAGCTTTGCTCTTCTC+TGG + chr2_4:11902579-11902598 Msa0315480:CDS 45.0%
! ATTGGTGTCCTTGCTGAGAA+AGG + chr2_4:11902621-11902640 Msa0315480:CDS 45.0%
GTGAGTTTCCTTTCTCAGCA+AGG - chr2_4:11902632-11902651 None:intergenic 45.0%
CTTCGATGAAGTCTCAAAGC+AGG - chr2_4:11902768-11902787 None:intergenic 45.0%
! GTCTCCAAAAGCATGCATCT+AGG - chr2_4:11902796-11902815 None:intergenic 45.0%
!! AAAAAAAAATCTTATAATTA+AGG - chr2_4:11897705-11897724 None:intergenic 5.0%
!! TAACAAAATAATTAAATAAT+TGG - chr2_4:11898335-11898354 None:intergenic 5.0%
!! GAAAAAAAATAAAAAAAATT+TGG + chr2_4:11899096-11899115 Msa0315480:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG + chr2_4:11899148-11899167 Msa0315480:intron 5.0%
!! AAAAAAAGATTAAAAAATTA+TGG - chr2_4:11900528-11900547 None:intergenic 5.0%
!!! TATTTTTAAATATAAGAAAT+CGG + chr2_4:11901164-11901183 Msa0315480:intron 5.0%
!!! ATTGATTTTTTTTTTTTTTA+CGG - chr2_4:11902417-11902436 None:intergenic 5.0%
!! GGTTCTAAGGCTTTGTGCCT+TGG + chr2_4:11897326-11897345 Msa0315480:CDS 50.0%
AAACCTTGCAATTTCGGGGG+GGG - chr2_4:11898895-11898914 None:intergenic 50.0%
CAAACCTTGCAATTTCGGGG+GGG - chr2_4:11898896-11898915 None:intergenic 50.0%
!! CATGGTTGGCTCGAATTGAC+CGG - chr2_4:11900969-11900988 None:intergenic 50.0%
AGGCTTGACAAATGGCCAAG+GGG + chr2_4:11902145-11902164 Msa0315480:intron 50.0%
AAAGAGGGACGGGCCTAAAT+GGG - chr2_4:11902180-11902199 None:intergenic 50.0%
AAAAGAGGGACGGGCCTAAA+TGG - chr2_4:11902181-11902200 None:intergenic 50.0%
GCGGATAGACTTAAGAGACC+AGG + chr2_4:11902217-11902236 Msa0315480:intron 50.0%
GCTTTGCTCTTCTCTGGCAA+TGG + chr2_4:11902585-11902604 Msa0315480:CDS 50.0%
TCAAACATGCAGCAGCAGCT+TGG - chr2_4:11902701-11902720 None:intergenic 50.0%
!! CAGGAAGCATCACAAGAGAG+AGG - chr2_4:11902749-11902768 None:intergenic 50.0%
AGGGTCCGACGTTCAAATCC+CGG - chr2_4:11897945-11897964 None:intergenic 55.0%
TCATATATGCCCCACGGGCT+AGG + chr2_4:11898301-11898320 Msa0315480:intron 55.0%
AACCTTGCAATTTCGGGGGG+GGG - chr2_4:11898894-11898913 None:intergenic 55.0%
TTGACAAATGGCCAAGGGGC+TGG + chr2_4:11902149-11902168 Msa0315480:intron 55.0%
AATGGGACATACCAGCCCCT+TGG - chr2_4:11902163-11902182 None:intergenic 55.0%
! GGGGCTGGTATGTCCCATTT+AGG + chr2_4:11902164-11902183 Msa0315480:intron 55.0%
! AGGCCCGTCCCTCTTTTTAG+TGG + chr2_4:11902184-11902203 Msa0315480:intron 55.0%
!! GGCCCGTCCCTCTTTTTAGT+GGG + chr2_4:11902185-11902204 Msa0315480:intron 55.0%
AATGGAGCTGCCTGGGCTAT+TGG + chr2_4:11902603-11902622 Msa0315480:CDS 55.0%
AGCAAGGACACCAATAGCCC+AGG - chr2_4:11902616-11902635 None:intergenic 55.0%
GGTGGCCGGGATTTGAACGT+CGG + chr2_4:11897937-11897956 Msa0315480:intron 60.0%
ACCTTGCAATTTCGGGGGGG+GGG - chr2_4:11898893-11898912 None:intergenic 60.0%
GGATCGACGGACACTTGTGG+CGG + chr2_4:11901890-11901909 Msa0315480:intron 60.0%
TCTCTGGCAATGGAGCTGCC+TGG + chr2_4:11902595-11902614 Msa0315480:CDS 60.0%
CTCTGGCAATGGAGCTGCCT+GGG + chr2_4:11902596-11902615 Msa0315480:CDS 60.0%
!! TATGCCCCACGGGCTAGGCT+AGG + chr2_4:11898306-11898325 Msa0315480:intron 65.0%
GAGTCCTAGCCTAGCCCGTG+GGG - chr2_4:11898313-11898332 None:intergenic 65.0%
GGAGTCCTAGCCTAGCCCGT+GGG - chr2_4:11898314-11898333 None:intergenic 65.0%
TGGAGTCCTAGCCTAGCCCG+TGG - chr2_4:11898315-11898334 None:intergenic 65.0%
TTGCAATTTCGGGGGGGGGG+GGG - chr2_4:11898890-11898909 None:intergenic 65.0%
CTTGCAATTTCGGGGGGGGG+GGG - chr2_4:11898891-11898910 None:intergenic 65.0%
CCTTGCAATTTCGGGGGGGG+GGG - chr2_4:11898892-11898911 None:intergenic 65.0%
TGCAATTTCGGGGGGGGGGG+GGG - chr2_4:11898889-11898908 None:intergenic 70.0%
CCCCCCCCCCCGAAATTGCA+AGG + chr2_4:11898889-11898908 Msa0315480:intron 70.0%
AATTTCGGGGGGGGGGGGGG+GGG - chr2_4:11898886-11898905 None:intergenic 75.0%
CAATTTCGGGGGGGGGGGGG+GGG - chr2_4:11898887-11898906 None:intergenic 75.0%
GCAATTTCGGGGGGGGGGGG+GGG - chr2_4:11898888-11898907 None:intergenic 75.0%
! ATTTCGGGGGGGGGGGGGGG+GGG - chr2_4:11898885-11898904 None:intergenic 80.0%
! TTTCGGGGGGGGGGGGGGGG+GGG - chr2_4:11898884-11898903 None:intergenic 85.0%
! TTCGGGGGGGGGGGGGGGGG+GGG - chr2_4:11898883-11898902 None:intergenic 90.0%
! TCGGGGGGGGGGGGGGGGGG+GGG - chr2_4:11898882-11898901 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 11896890 11903050 11896890 ID=Msa0315480;Name=Msa0315480
chr2_4 mRNA 11896890 11903050 11896890 ID=Msa0315480-mRNA-1;Parent=Msa0315480;Name=Msa0315480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=362|1|1|1|1|1|2|253|189
chr2_4 exon 11896890 11897481 11896890 ID=Msa0315480-mRNA-1:exon:4540;Parent=Msa0315480-mRNA-1
chr2_4 exon 11902458 11903050 11902458 ID=Msa0315480-mRNA-1:exon:4541;Parent=Msa0315480-mRNA-1
chr2_4 five_prime_UTR 11896890 11897251 11896890 ID=Msa0315480-mRNA-1:five_prime_utr;Parent=Msa0315480-mRNA-1
chr2_4 CDS 11897252 11897481 11897252 ID=Msa0315480-mRNA-1:cds;Parent=Msa0315480-mRNA-1
chr2_4 CDS 11902458 11902797 11902458 ID=Msa0315480-mRNA-1:cds;Parent=Msa0315480-mRNA-1
chr2_4 three_prime_UTR 11902798 11903050 11902798 ID=Msa0315480-mRNA-1:three_prime_utr;Parent=Msa0315480-mRNA-1
Gene Sequence

>Msa0315480

ATGGAGGTTCAAAGTAGTAAAGAGTTGAAGGAAATTGTGGTGGTAAAGTCTTCACTAGAAGGAACTTGTAGTTTGGTTCTAAGGCTTTGTGCCTTGGTTCTAACACTTACGGCTGCTATAGTACTTGTTGCAGATAAACAAACCACAGTTGTTCCAGTTAAGATTTCAGATTCTTTACCACCTTTGGATGTTCCTGTTACTGCTAAGTGGCAATACATGTCTGCCTATGTGTATTTTGTGGTGGCAAATGTTATAGCATTTGCATATGCAACCTTGTCTTTCATTATTGCTCTTGCAAATGGGCATAAAAGCAAATGGTTAGTGACATTGGTGACTCTACTTGACGCAATAATGGTAGCTTTGCTCTTCTCTGGCAATGGAGCTGCCTGGGCTATTGGTGTCCTTGCTGAGAAAGGAAACTCACATGTGCTATGGAACAAAGTGTGTCATGTCTTTGACAAATTTTGCAACCAAGCTGCTGCTGCATGTTTGATTTCACTTCTTGGATCAGTATTTTTCCTCTCTCTTGTGATGCTTCCTGCTTTGAGACTTCATCGAAGAAGAACCTAG

Protein sequence

>Msa0315480

MEVQSSKELKEIVVVKSSLEGTCSLVLRLCALVLTLTAAIVLVADKQTTVVPVKISDSLPPLDVPVTAKWQYMSAYVYFVVANVIAFAYATLSFIIALANGHKSKWLVTLVTLLDAIMVALLFSGNGAAWAIGVLAEKGNSHVLWNKVCHVFDKFCNQAAAACLISLLGSVFFLSLVMLPALRLHRRRT*