AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0207180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207180 MtrunA17_Chr2g0286341 93.651 189 12 0 1 189 1 189 3.19e-123 345
Msa0207180 MtrunA17_Chr4g0066721 61.905 147 55 1 21 166 31 177 3.44e-60 186
Msa0207180 MtrunA17_Chr7g0268681 42.857 182 93 3 11 189 17 190 6.52e-43 142
Msa0207180 MtrunA17_Chr8g0381001 36.552 145 89 2 25 167 28 171 1.56e-24 95.1
Msa0207180 MtrunA17_Chr4g0066711 37.692 130 76 2 62 187 56 184 1.53e-22 89.7
Msa0207180 MtrunA17_Chr2g0303151 31.579 152 101 3 25 174 29 179 6.03e-16 72.4
Msa0207180 MtrunA17_Chr4g0021111 30.128 156 94 3 23 178 8 148 5.38e-14 66.6
Msa0207180 MtrunA17_Chr7g0217691 32.335 167 99 4 25 187 30 186 3.29e-13 65.1
Msa0207180 MtrunA17_Chr7g0251531 27.778 162 104 2 26 184 33 184 7.24e-12 61.2
Msa0207180 MtrunA17_Chr4g0042551 25.444 169 110 3 25 188 61 218 3.95e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207180 AT4G15630.1 48.108 185 88 2 1 184 12 189 3.07e-51 163
Msa0207180 AT4G15620.1 46.486 185 91 4 1 184 12 189 3.12e-47 153
Msa0207180 AT4G15610.1 34.194 155 87 5 22 168 25 172 1.04e-19 82.8
Msa0207180 AT3G06390.1 34.815 135 81 2 25 156 39 169 2.17e-18 79.3
Msa0207180 AT5G44550.1 30.719 153 101 3 25 174 20 170 5.37e-14 67.8
Msa0207180 AT4G15610.2 36.170 94 57 1 78 168 23 116 8.95e-13 63.2
Msa0207180 AT4G20390.1 33.088 136 88 3 25 158 20 154 9.27e-13 64.3
Msa0207180 AT1G14160.1 29.091 165 107 3 25 187 53 209 1.25e-12 64.3
Msa0207180 AT5G15290.1 31.126 151 86 4 24 170 29 165 6.82e-12 61.6

Find 49 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGTTTGATTTCACTTCT+TGG 0.164285 2_1:+37594834 Msa0207180:CDS
GTTGAATGAAATTTAAGATA+TGG 0.255413 2_1:-37590172 None:intergenic
TTCAGATTCTTTACCACCTT+TGG 0.287155 2_1:+37590544 Msa0207180:CDS
GAACTTGTAGTTTGGTTCTA+AGG 0.290000 2_1:+37590441 Msa0207180:CDS
TTCATTATTGCTCTTGCAAA+TGG 0.304694 2_1:+37594630 Msa0207180:CDS
AATGGAGCTGCCTGGGCTAT+TGG 0.310330 2_1:+37594726 Msa0207180:CDS
AAAGAATCTGAAATCTTAAC+TGG 0.325446 2_1:-37590533 None:intergenic
AGAACCTAGATGCATGCTTT+TGG 0.342267 2_1:+37594912 Msa0207180:exon
CTCTGGCAATGGAGCTGCCT+GGG 0.353297 2_1:+37594719 Msa0207180:CDS
GGTTCTAAGGCTTTGTGCCT+TGG 0.356571 2_1:+37590454 Msa0207180:CDS
TCTCTGGCAATGGAGCTGCC+TGG 0.366116 2_1:+37594718 Msa0207180:CDS
ACTAGAAGGAACTTGTAGTT+TGG 0.383357 2_1:+37590433 Msa0207180:CDS
TGCCTTGGTTCTAACACTTA+CGG 0.396121 2_1:+37590469 Msa0207180:CDS
ATGCACACGTTACATCTTGC+TGG 0.398008 2_1:+37590045 Msa0207180:five_prime_UTR
GACTCTACTTGACGCAATAA+TGG 0.402079 2_1:+37594683 Msa0207180:CDS
TATTGCCACTTAGCAGTAAC+AGG 0.403955 2_1:-37590572 None:intergenic
TCAAAGTAGTAAAGAGTTGA+AGG 0.416149 2_1:+37590388 Msa0207180:CDS
ATGGTAGCTTTGCTCTTCTC+TGG 0.423813 2_1:+37594702 Msa0207180:CDS
TTATTTCTTTGTAACATTTG+TGG 0.429807 2_1:+37595057 Msa0207180:three_prime_UTR
TTTCATTCAACATAAATAAG+TGG 0.447907 2_1:+37590184 Msa0207180:five_prime_UTR
GCTTTGCTCTTCTCTGGCAA+TGG 0.475961 2_1:+37594708 Msa0207180:CDS
TCATTATTGCTCTTGCAAAT+GGG 0.478620 2_1:+37594631 Msa0207180:CDS
CAAATGGGCATAAAAGCAAA+TGG 0.489917 2_1:+37594646 Msa0207180:CDS
AGATCTTGTCAATAATTGCT+AGG 0.499264 2_1:-37590222 None:intergenic
TGACATAATAATGTTGATGT+TGG 0.509693 2_1:+37595033 Msa0207180:three_prime_UTR
TAGAAATGTGATTAAAATGA+TGG 0.510564 2_1:-37590073 None:intergenic
ATTGGTGTCCTTGCTGAGAA+AGG 0.524437 2_1:+37594744 Msa0207180:CDS
AAGATGAACATAAGAGGCAT+TGG 0.526096 2_1:-37590098 None:intergenic
TAAAGAGTTGAAGGAAATTG+TGG 0.527493 2_1:+37590397 Msa0207180:CDS
AAGCAAATGGTTAGTGACAT+TGG 0.532245 2_1:+37594659 Msa0207180:CDS
AAGGAAACTCACATGTGCTA+TGG 0.533697 2_1:+37594763 Msa0207180:CDS
GTGGTAAAGTCTTCACTAGA+AGG 0.536766 2_1:+37590419 Msa0207180:CDS
TGATAAAAGATGAACATAAG+AGG 0.541084 2_1:-37590104 None:intergenic
CTTCGATGAAGTCTCAAAGC+AGG 0.542570 2_1:-37594888 None:intergenic
GTCTCCAAAAGCATGCATCT+AGG 0.543676 2_1:-37594916 None:intergenic
GATCTTGTCAATAATTGCTA+GGG 0.545108 2_1:-37590221 None:intergenic
AGCAAGGACACCAATAGCCC+AGG 0.569795 2_1:-37594736 None:intergenic
TCAAACATGCAGCAGCAGCT+TGG 0.577464 2_1:-37594821 None:intergenic
ATGTTCCTGTTACTGCTAAG+TGG 0.581337 2_1:+37590567 Msa0207180:CDS
GTGAGTTTCCTTTCTCAGCA+AGG 0.583749 2_1:-37594752 None:intergenic
ACTCTTCTGAATATATCAGA+TGG 0.600770 2_1:-37590330 None:intergenic
AAATGTGATTAAAATGATGG+AGG 0.610594 2_1:-37590070 None:intergenic
CAGGAAGCATCACAAGAGAG+AGG 0.623721 2_1:-37594869 None:intergenic
GCAGTAACAGGAACATCCAA+AGG 0.629483 2_1:-37590560 None:intergenic
AATCTTAACTGGAACAACTG+TGG 0.642596 2_1:-37590522 None:intergenic
AGAGTTGAAGGAAATTGTGG+TGG 0.665080 2_1:+37590400 Msa0207180:CDS
AGCCGTAAGTGTTAGAACCA+AGG 0.675160 2_1:-37590471 None:intergenic
GTAACAGGAACATCCAAAGG+TGG 0.698112 2_1:-37590557 None:intergenic
AAGAGCAATAATGAAAGACA+AGG 0.698566 2_1:-37594622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATGTAAAATAAATAA+GGG - chr2_1:37590935-37590954 None:intergenic 10.0%
!! AAAATGATGTAAAATAAATA+AGG - chr2_1:37590936-37590955 None:intergenic 10.0%
!! AACTATATACAAAAAAAAAT+TGG + chr2_1:37591045-37591064 Msa0207180:intron 10.0%
!!! TTTTAATATATTTTCTTGTT+AGG - chr2_1:37591599-37591618 None:intergenic 10.0%
!! GAAAAAAAATTAAAAAATTC+TGG + chr2_1:37592289-37592308 Msa0207180:intron 10.0%
!! TAATAAAAATGAAAAAAATC+TGG + chr2_1:37592376-37592395 Msa0207180:intron 10.0%
!! TAAAAAAGATTAAAAAATTC+TGG + chr2_1:37592462-37592481 Msa0207180:intron 10.0%
!!! TTCTAAAAAAATTAAAATTC+TGG + chr2_1:37592506-37592525 Msa0207180:intron 10.0%
!!! TTTAAATTTTAATGAAATTC+TGG + chr2_1:37592540-37592559 Msa0207180:intron 10.0%
!! TATTTATAAACCTATAATAA+GGG + chr2_1:37592715-37592734 Msa0207180:intron 10.0%
!! ATATATACTAATCAAAATTT+CGG + chr2_1:37592905-37592924 Msa0207180:intron 10.0%
!! TAATAAAAATGAAAAAAATC+TGG - chr2_1:37592376-37592395 None:intergenic 10.0%
!! AAAAAAAGATTAAAAAATTC+TGG - chr2_1:37593205-37593224 None:intergenic 10.0%
!! AAAAAAAATTGAAAAAATTC+TGG - chr2_1:37593289-37593308 None:intergenic 10.0%
!! TAGAAAAAAAAAAAGTAAAA+TGG - chr2_1:37594199-37594218 None:intergenic 10.0%
!!! TACTTTTGTTTACTATTTTT+AGG + chr2_1:37590352-37590371 Msa0207180:five_prime_UTR 15.0%
!! AAAGAAATACTTAATGTAAT+TGG - chr2_1:37590903-37590922 None:intergenic 15.0%
!! TATATACAAAAAAAAATTGG+TGG + chr2_1:37591048-37591067 Msa0207180:intron 15.0%
!!! AAAATTTTACAAAGAAAATG+GGG - chr2_1:37591299-37591318 None:intergenic 15.0%
!!! CAAAATTTTACAAAGAAAAT+GGG - chr2_1:37591300-37591319 None:intergenic 15.0%
!!! AAAATTTTACAAAGAAAATG+GGG - chr2_1:37591299-37591318 None:intergenic 15.0%
!!! CAAAATTTTACAAAGAAAAT+GGG - chr2_1:37591300-37591319 None:intergenic 15.0%
!! AAATAGCATAATAAAATGAA+TGG - chr2_1:37591737-37591756 None:intergenic 15.0%
!!! TGTATTTAAAATTTATGCTA+TGG - chr2_1:37591782-37591801 None:intergenic 15.0%
!! TAATAAATAATTGATGTGAT+TGG - chr2_1:37591874-37591893 None:intergenic 15.0%
!! GAAAAAAATAATGAGTAAAT+AGG + chr2_1:37592059-37592078 Msa0207180:intron 15.0%
!!! TTTTTAATTTTTCAAGTTCA+GGG - chr2_1:37593304-37593323 None:intergenic 15.0%
!!! TTTTTTAATTTTTCAAGTTC+AGG - chr2_1:37593303-37593322 None:intergenic 15.0%
!! GTATTTATAAACCTATAATA+AGG + chr2_1:37592714-37592733 Msa0207180:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr2_1:37592791-37592810 Msa0207180:intron 15.0%
!! GAAAAATAATGAAAAAATTC+TGG - chr2_1:37592433-37592452 None:intergenic 15.0%
!! CTGAAAAAATTTAAAAATTC+TGG - chr2_1:37593080-37593099 None:intergenic 15.0%
!!! ACATTATTTTTTGAGTAAAT+AGG - chr2_1:37593510-37593529 None:intergenic 15.0%
!!! TATTAAAGAAAATTTTGTAG+CGG - chr2_1:37593895-37593914 None:intergenic 15.0%
!! ATATACAACGAAATAAAAAT+CGG + chr2_1:37593994-37594013 Msa0207180:intron 15.0%
!!! AATTTTTTTTGGATTAAACA+AGG - chr2_1:37594941-37594960 None:intergenic 15.0%
!!! ATCAATCACATAATTTTTTT+TGG - chr2_1:37594952-37594971 None:intergenic 15.0%
!! TAGAAATGTGATTAAAATGA+TGG - chr2_1:37590076-37590095 None:intergenic 20.0%
!!! GTTGAATGAAATTTAAGATA+TGG - chr2_1:37590175-37590194 None:intergenic 20.0%
!! TTTCATTCAACATAAATAAG+TGG + chr2_1:37590184-37590203 Msa0207180:five_prime_UTR 20.0%
!!! TTACTATTTTTAGGAAGTAA+TGG + chr2_1:37590361-37590380 Msa0207180:exon 20.0%
!! TCTCAATGCATATAATTAAT+GGG - chr2_1:37590740-37590759 None:intergenic 20.0%
!! TTCTCAATGCATATAATTAA+TGG - chr2_1:37590741-37590760 None:intergenic 20.0%
!!! ATGTTCAAATTACTTTTGTT+TGG + chr2_1:37590763-37590782 Msa0207180:intron 20.0%
!! TAAGAAAATTGAGACAATAA+AGG - chr2_1:37590793-37590812 None:intergenic 20.0%
!!! CTCTTTTTATAAGACTTTTT+TGG + chr2_1:37590872-37590891 Msa0207180:intron 20.0%
!! CAATGCATATAATATATGTA+GGG - chr2_1:37591096-37591115 None:intergenic 20.0%
!! ACAATGCATATAATATATGT+AGG - chr2_1:37591097-37591116 None:intergenic 20.0%
!! TCACAAAAGTTGTTAAAAAA+TGG - chr2_1:37591205-37591224 None:intergenic 20.0%
!!! GCAAAATTTTACAAAGAAAA+TGG - chr2_1:37591301-37591320 None:intergenic 20.0%
!!! GCAAAATTTTACAAAGAAAA+TGG - chr2_1:37591301-37591320 None:intergenic 20.0%
!!! AAAATGGTTCTATATTAACA+AGG + chr2_1:37591455-37591474 Msa0207180:intron 20.0%
!!! AACTAGCTTTAAATCTTATA+TGG + chr2_1:37591655-37591674 Msa0207180:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG + chr2_1:37592190-37592209 Msa0207180:intron 20.0%
!!! TTTTAATTTTTCAAGTTCAG+GGG - chr2_1:37593305-37593324 None:intergenic 20.0%
!! ATTCTCGAAAATAAAAATTC+TGG + chr2_1:37592565-37592584 Msa0207180:intron 20.0%
!! CGAAAATAAAAATGAAATTC+TGG + chr2_1:37592618-37592637 Msa0207180:intron 20.0%
!!! CATATTTTTTCCCTTATTAT+AGG - chr2_1:37592728-37592747 None:intergenic 20.0%
!! ATAAATAAAAAACCTAAGCT+CGG - chr2_1:37592763-37592782 None:intergenic 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr2_1:37592792-37592811 Msa0207180:intron 20.0%
!! TATAAATACACAAAAATTCC+CGG - chr2_1:37592813-37592832 None:intergenic 20.0%
!! ATAAATACACAAAAAGTTCT+CGG - chr2_1:37592838-37592857 None:intergenic 20.0%
!! TATTTATAAACCGAGAATAA+GGG + chr2_1:37592851-37592870 Msa0207180:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG - chr2_1:37592190-37592209 None:intergenic 20.0%
!! AATATAAATGCGTTGAAAAT+GGG - chr2_1:37593618-37593637 None:intergenic 20.0%
!! AAATATAAATGCGTTGAAAA+TGG - chr2_1:37593619-37593638 None:intergenic 20.0%
!! TTTCAACGCATTTATATTTA+CGG + chr2_1:37593620-37593639 Msa0207180:intron 20.0%
!! ATGTTGTTATACAACTTTAA+AGG + chr2_1:37593767-37593786 Msa0207180:intron 20.0%
!!! TGATAATTAGTTTACAAAAG+AGG - chr2_1:37593812-37593831 None:intergenic 20.0%
!!! AATTTTTCCTTTCGTTTATT+AGG + chr2_1:37594559-37594578 Msa0207180:intron 20.0%
!!! TTATTTCTTTGTAACATTTG+TGG + chr2_1:37595057-37595076 Msa0207180:three_prime_UTR 20.0%
! AAATGTGATTAAAATGATGG+AGG - chr2_1:37590073-37590092 None:intergenic 25.0%
! TGATAAAAGATGAACATAAG+AGG - chr2_1:37590107-37590126 None:intergenic 25.0%
! TGGAACAACATATCTAAAAA+CGG - chr2_1:37590155-37590174 None:intergenic 25.0%
!!! AATAGTGTTGATACCAAAAA+TGG - chr2_1:37590265-37590284 None:intergenic 25.0%
!!! AATGAAGATTGTTTTGCAAA+AGG - chr2_1:37590304-37590323 None:intergenic 25.0%
!! AAAGAATCTGAAATCTTAAC+TGG - chr2_1:37590536-37590555 None:intergenic 25.0%
! TTAAGAACATGATAGAAAGA+GGG - chr2_1:37590643-37590662 None:intergenic 25.0%
! ATTAAGAACATGATAGAAAG+AGG - chr2_1:37590644-37590663 None:intergenic 25.0%
! ATACAAAAAAAAATTGGTGG+TGG + chr2_1:37591051-37591070 Msa0207180:intron 25.0%
! AAATATCATTTCACAGTTGT+TGG - chr2_1:37591176-37591195 None:intergenic 25.0%
! AGTTAAAACATAATGTGAGT+AGG - chr2_1:37591241-37591260 None:intergenic 25.0%
!!! ACTTTTTCTCTCTATTGATT+TGG + chr2_1:37591258-37591277 Msa0207180:intron 25.0%
!!! CTTTTTCTCTCTATTGATTT+GGG + chr2_1:37591259-37591278 Msa0207180:intron 25.0%
!! TAAAATTTTGCTTGTCACAA+AGG + chr2_1:37591310-37591329 Msa0207180:intron 25.0%
!! TAAAATTTTGCTTGTCACAA+AGG + chr2_1:37591310-37591329 Msa0207180:intron 25.0%
! TCGTGATGTTAATTACTTAA+TGG + chr2_1:37591920-37591939 Msa0207180:intron 25.0%
! AATGAAATGTTATAGAAGCA+TGG + chr2_1:37592001-37592020 Msa0207180:intron 25.0%
! TTTGACAAACCTTACAATTT+CGG - chr2_1:37592095-37592114 None:intergenic 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr2_1:37593416-37593435 None:intergenic 25.0%
! ACAGTTAACAGAAAAATTGA+CGG - chr2_1:37593380-37593399 None:intergenic 25.0%
! ACATAAGTGTAAAATTTCAG+GGG - chr2_1:37593337-37593356 None:intergenic 25.0%
! CACATAAGTGTAAAATTTCA+GGG - chr2_1:37593336-37593355 None:intergenic 25.0%
!!! TTTAATTTTTCAAGTTCAGG+GGG - chr2_1:37592262-37592281 None:intergenic 25.0%
! GTATTTATAAACCGAGAATA+AGG + chr2_1:37592850-37592869 Msa0207180:intron 25.0%
!!! TGTATTTTTTCCCTTATTCT+CGG - chr2_1:37592864-37592883 None:intergenic 25.0%
! TTAGTATATATATCGAGCTT+AGG - chr2_1:37592896-37592915 None:intergenic 25.0%
! ATGTCGAAATTTCAAAATTC+TGG - chr2_1:37592953-37592972 None:intergenic 25.0%
! CACATAAGTGTAAAATTTCA+GGG + chr2_1:37593336-37593355 Msa0207180:intron 25.0%
! ACATAAGTGTAAAATTTCAG+GGG + chr2_1:37593337-37593356 Msa0207180:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr2_1:37593380-37593399 Msa0207180:intron 25.0%
! TTGATGTTTCGTTAATTACA+AGG + chr2_1:37593445-37593464 Msa0207180:intron 25.0%
! TGATGTTTCGTTAATTACAA+GGG + chr2_1:37593446-37593465 Msa0207180:intron 25.0%
! AACAAAATACTGTGTATCTA+TGG - chr2_1:37593583-37593602 None:intergenic 25.0%
! ATATAAATGCGTTGAAAATG+GGG - chr2_1:37593617-37593636 None:intergenic 25.0%
!!! TAAAGGTAACTACTTTTTGA+TGG + chr2_1:37593784-37593803 Msa0207180:intron 25.0%
!!! AAAGGTAACTACTTTTTGAT+GGG + chr2_1:37593785-37593804 Msa0207180:intron 25.0%
! AAATTTGATTGTGCATACAT+AGG + chr2_1:37594249-37594268 Msa0207180:intron 25.0%
! GCCTAAAATAGTTGATTAAA+CGG + chr2_1:37594386-37594405 Msa0207180:intron 25.0%
! CCTAAAATAGTTGATTAAAC+GGG + chr2_1:37594387-37594406 Msa0207180:intron 25.0%
! CAAAATACCTAATAAACGAA+AGG - chr2_1:37594569-37594588 None:intergenic 25.0%
!! TTCGTTTATTAGGTATTTTG+TGG + chr2_1:37594569-37594588 Msa0207180:intron 25.0%
! TGACATAATAATGTTGATGT+TGG + chr2_1:37595033-37595052 Msa0207180:three_prime_UTR 25.0%
!!! GTTTCTACTTTTTGTATTTC+TGG + chr2_1:37595140-37595159 Msa0207180:three_prime_UTR 25.0%
GATCTTGTCAATAATTGCTA+GGG - chr2_1:37590224-37590243 None:intergenic 30.0%
AGATCTTGTCAATAATTGCT+AGG - chr2_1:37590225-37590244 None:intergenic 30.0%
!! ATTTGTTACCCAACCATTTT+TGG + chr2_1:37590249-37590268 Msa0207180:five_prime_UTR 30.0%
TGTTGATACCAAAAATGGTT+GGG - chr2_1:37590260-37590279 None:intergenic 30.0%
ACTCTTCTGAATATATCAGA+TGG - chr2_1:37590333-37590352 None:intergenic 30.0%
!!! CTATTTTTAGGAAGTAATGG+AGG + chr2_1:37590364-37590383 Msa0207180:exon 30.0%
TCAAAGTAGTAAAGAGTTGA+AGG + chr2_1:37590388-37590407 Msa0207180:CDS 30.0%
TAAAGAGTTGAAGGAAATTG+TGG + chr2_1:37590397-37590416 Msa0207180:CDS 30.0%
GGGAAATATAACTTACACAT+AGG - chr2_1:37590606-37590625 None:intergenic 30.0%
AGAGGGAACAATCTATTTAA+GGG - chr2_1:37590626-37590645 None:intergenic 30.0%
AAGAGGGAACAATCTATTTA+AGG - chr2_1:37590627-37590646 None:intergenic 30.0%
TAAACTAACTCTTGCTCTTA+AGG + chr2_1:37591000-37591019 Msa0207180:intron 30.0%
AACACAACTCTTTAGCAAAA+TGG + chr2_1:37591439-37591458 Msa0207180:intron 30.0%
GGTTCTATATTAACAAGGTT+CGG + chr2_1:37591460-37591479 Msa0207180:intron 30.0%
! GGACAATTTTGTTGCATTTT+TGG - chr2_1:37591716-37591735 None:intergenic 30.0%
TTGACAAACCTTACAATTTC+GGG - chr2_1:37592094-37592113 None:intergenic 30.0%
TTGATGTTTCGTTAACTACA+GGG - chr2_1:37592122-37592141 None:intergenic 30.0%
ATTGATGTTTCGTTAACTAC+AGG - chr2_1:37592123-37592142 None:intergenic 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr2_1:37593417-37593436 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG - chr2_1:37593415-37593434 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG - chr2_1:37593384-37593403 None:intergenic 30.0%
ATAAGTGTAAAATTTCAGGG+GGG - chr2_1:37593339-37593358 None:intergenic 30.0%
CATAAGTGTAAAATTTCAGG+GGG - chr2_1:37593338-37593357 None:intergenic 30.0%
GCACATAAGTGTAAAATTTC+AGG - chr2_1:37593335-37593354 None:intergenic 30.0%
TGTATTTATAAACCGAGCTT+AGG + chr2_1:37592748-37592767 Msa0207180:intron 30.0%
GCACATAAGTGTAAAATTTC+AGG + chr2_1:37593335-37593354 Msa0207180:intron 30.0%
CATAAGTGTAAAATTTCAGG+GGG + chr2_1:37593338-37593357 Msa0207180:intron 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr2_1:37593384-37593403 Msa0207180:intron 30.0%
TTAACGTTATGCAATTTCAG+AGG + chr2_1:37593417-37593436 Msa0207180:intron 30.0%
TAACGTTATGCAATTTCAGA+GGG + chr2_1:37593418-37593437 Msa0207180:intron 30.0%
GATGTTTCGTTAATTACAAG+GGG + chr2_1:37593447-37593466 Msa0207180:intron 30.0%
TTTGACAAACCTTGCAATTT+CGG + chr2_1:37593473-37593492 Msa0207180:intron 30.0%
GCATTTATATTTACGGTTAC+CGG + chr2_1:37593627-37593646 Msa0207180:intron 30.0%
!! AAGTATGGTTGAGTTTTATG+GGG - chr2_1:37593705-37593724 None:intergenic 30.0%
!! CAAGTATGGTTGAGTTTTAT+GGG - chr2_1:37593706-37593725 None:intergenic 30.0%
! ACAAGTATGGTTGAGTTTTA+TGG - chr2_1:37593707-37593726 None:intergenic 30.0%
CTTATTAATGGCAACAAGTA+TGG - chr2_1:37593720-37593739 None:intergenic 30.0%
CATTTAACCCACTAAAAAGA+GGG - chr2_1:37594319-37594338 None:intergenic 30.0%
TCATTTAACCCACTAAAAAG+AGG - chr2_1:37594320-37594339 None:intergenic 30.0%
!!! TCTTTTTAGTGGGTTAAATG+AGG + chr2_1:37594319-37594338 Msa0207180:intron 30.0%
! TTTTAGGCTGATTGAATTTG+AGG - chr2_1:37594374-37594393 None:intergenic 30.0%
! CCCGTTTAATCAACTATTTT+AGG - chr2_1:37594390-37594409 None:intergenic 30.0%
TTGGCTAAAGTAGTCATATT+TGG + chr2_1:37594440-37594459 Msa0207180:intron 30.0%
TGGCTAAAGTAGTCATATTT+GGG + chr2_1:37594441-37594460 Msa0207180:intron 30.0%
GTAGTAAGATGTCAAAAACA+TGG - chr2_1:37594475-37594494 None:intergenic 30.0%
! GTTTATTAGGTATTTTGTGG+TGG + chr2_1:37594572-37594591 Msa0207180:intron 30.0%
AAGAGCAATAATGAAAGACA+AGG - chr2_1:37594625-37594644 None:intergenic 30.0%
TTCATTATTGCTCTTGCAAA+TGG + chr2_1:37594630-37594649 Msa0207180:CDS 30.0%
TCATTATTGCTCTTGCAAAT+GGG + chr2_1:37594631-37594650 Msa0207180:CDS 30.0%
! AAGATGAACATAAGAGGCAT+TGG - chr2_1:37590101-37590120 None:intergenic 35.0%
!!! AGTAGCTGGAAGTTTTTTGT+TGG - chr2_1:37590130-37590149 None:intergenic 35.0%
ATCTAAAAACGGTTAGTAGC+TGG - chr2_1:37590144-37590163 None:intergenic 35.0%
! GTGTTGATACCAAAAATGGT+TGG - chr2_1:37590261-37590280 None:intergenic 35.0%
ACTAGAAGGAACTTGTAGTT+TGG + chr2_1:37590433-37590452 Msa0207180:CDS 35.0%
!! GAACTTGTAGTTTGGTTCTA+AGG + chr2_1:37590441-37590460 Msa0207180:CDS 35.0%
AATCTTAACTGGAACAACTG+TGG - chr2_1:37590525-37590544 None:intergenic 35.0%
TTCAGATTCTTTACCACCTT+TGG + chr2_1:37590544-37590563 Msa0207180:CDS 35.0%
!! AAAAAAAAATTGGTGGTGGC+CGG + chr2_1:37591055-37591074 Msa0207180:intron 35.0%
! CGAACTTAACTTAGTTGGTA+GGG - chr2_1:37591120-37591139 None:intergenic 35.0%
! AATTTTCCCCCGAAATTGTA+AGG + chr2_1:37592083-37592102 Msa0207180:intron 35.0%
TGACAAACCTTACAATTTCG+GGG - chr2_1:37592093-37592112 None:intergenic 35.0%
TGATGTTTCGTTAACTACAG+GGG - chr2_1:37592121-37592140 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr2_1:37592149-37592168 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG - chr2_1:37593385-37593404 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG - chr2_1:37593383-37593402 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr2_1:37593383-37593402 Msa0207180:intron 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr2_1:37593385-37593404 Msa0207180:intron 35.0%
AACGTTATGCAATTTCAGAG+GGG + chr2_1:37593419-37593438 Msa0207180:intron 35.0%
TTGACAAACCTTGCAATTTC+GGG + chr2_1:37593474-37593493 Msa0207180:intron 35.0%
ATACTGTGTATCTATGGAGA+AGG - chr2_1:37593577-37593596 None:intergenic 35.0%
ACCAAATAGAAATGCATGGT+TGG - chr2_1:37593663-37593682 None:intergenic 35.0%
ACCATGCATTTCTATTTGGT+TGG + chr2_1:37593663-37593682 Msa0207180:intron 35.0%
! ATTTCTATTTGGTTGGCTGA+AGG + chr2_1:37593670-37593689 Msa0207180:intron 35.0%
CGAAATAAAAATCGGATCGA+CGG + chr2_1:37594002-37594021 Msa0207180:intron 35.0%
!!! TTTTAGTGGGTTAAATGAGG+CGG + chr2_1:37594322-37594341 Msa0207180:intron 35.0%
!!! TGAATTTGAGGTTTTGAACC+TGG - chr2_1:37594362-37594381 None:intergenic 35.0%
! AATAGTTGATTAAACGGGCT+AGG + chr2_1:37594392-37594411 Msa0207180:intron 35.0%
!! ATAGTTGATTAAACGGGCTA+GGG + chr2_1:37594393-37594412 Msa0207180:intron 35.0%
AAAGTTAGAGGTGGAAAAAC+GGG - chr2_1:37594422-37594441 None:intergenic 35.0%
CAAAGTTAGAGGTGGAAAAA+CGG - chr2_1:37594423-37594442 None:intergenic 35.0%
ACTACTTTAGCCAAAGTTAG+AGG - chr2_1:37594434-37594453 None:intergenic 35.0%
CAAATGGGCATAAAAGCAAA+TGG + chr2_1:37594646-37594665 Msa0207180:CDS 35.0%
AAGCAAATGGTTAGTGACAT+TGG + chr2_1:37594659-37594678 Msa0207180:CDS 35.0%
! GCATGTTTGATTTCACTTCT+TGG + chr2_1:37594834-37594853 Msa0207180:CDS 35.0%
AGAGTTGAAGGAAATTGTGG+TGG + chr2_1:37590400-37590419 Msa0207180:CDS 40.0%
GTGGTAAAGTCTTCACTAGA+AGG + chr2_1:37590419-37590438 Msa0207180:CDS 40.0%
!! TGCCTTGGTTCTAACACTTA+CGG + chr2_1:37590469-37590488 Msa0207180:CDS 40.0%
ATGTTCCTGTTACTGCTAAG+TGG + chr2_1:37590567-37590586 Msa0207180:CDS 40.0%
! TATTGCCACTTAGCAGTAAC+AGG - chr2_1:37590575-37590594 None:intergenic 40.0%
!! AAAAAAAATTGGTGGTGGCC+GGG + chr2_1:37591056-37591075 Msa0207180:intron 40.0%
GCGAACTTAACTTAGTTGGT+AGG - chr2_1:37591121-37591140 None:intergenic 40.0%
CATCGCGAACTTAACTTAGT+TGG - chr2_1:37591125-37591144 None:intergenic 40.0%
! GGTTCGGCTCTAGTATTTAT+AGG + chr2_1:37591476-37591495 Msa0207180:intron 40.0%
AATCGATCATATATGCCCCA+CGG + chr2_1:37591508-37591527 Msa0207180:intron 40.0%
GACAAACCTTACAATTTCGG+GGG - chr2_1:37592092-37592111 None:intergenic 40.0%
GATGTTTCGTTAACTACAGG+GGG - chr2_1:37592120-37592139 None:intergenic 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr2_1:37592148-37592167 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG - chr2_1:37593386-37593405 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr2_1:37593386-37593405 Msa0207180:intron 40.0%
TGACAAACCTTGCAATTTCG+GGG + chr2_1:37593475-37593494 Msa0207180:intron 40.0%
GTGTATCTATGGAGAAGGAA+TGG - chr2_1:37593572-37593591 None:intergenic 40.0%
GCCAACCATGCATTTCTATT+TGG + chr2_1:37593659-37593678 Msa0207180:intron 40.0%
GCCAACCAAATAGAAATGCA+TGG - chr2_1:37593667-37593686 None:intergenic 40.0%
GTGAGTCGCGATCTTATTAA+TGG - chr2_1:37593732-37593751 None:intergenic 40.0%
!! TGTGGCGGTTATTTCTAAAG+TGG + chr2_1:37594030-37594049 Msa0207180:intron 40.0%
!! GTGGCGGTTATTTCTAAAGT+GGG + chr2_1:37594031-37594050 Msa0207180:intron 40.0%
GCATACATAGGCTTGACAAA+TGG + chr2_1:37594261-37594280 Msa0207180:intron 40.0%
TAACCCACTAAAAAGAGGGA+CGG - chr2_1:37594315-37594334 None:intergenic 40.0%
! CGTTTTTCCACCTCTAACTT+TGG + chr2_1:37594421-37594440 Msa0207180:intron 40.0%
ACTTTAGCCAAAGTTAGAGG+TGG - chr2_1:37594431-37594450 None:intergenic 40.0%
GACTCTACTTGACGCAATAA+TGG + chr2_1:37594683-37594702 Msa0207180:CDS 40.0%
AAGGAAACTCACATGTGCTA+TGG + chr2_1:37594763-37594782 Msa0207180:CDS 40.0%
! AGAACCTAGATGCATGCTTT+TGG + chr2_1:37594912-37594931 Msa0207180:exon 40.0%
ATGCACACGTTACATCTTGC+TGG + chr2_1:37590045-37590064 Msa0207180:five_prime_UTR 45.0%
AGCCGTAAGTGTTAGAACCA+AGG - chr2_1:37590474-37590493 None:intergenic 45.0%
GTAACAGGAACATCCAAAGG+TGG - chr2_1:37590560-37590579 None:intergenic 45.0%
GCAGTAACAGGAACATCCAA+AGG - chr2_1:37590563-37590582 None:intergenic 45.0%
ATCGATCATATATGCCCCAC+GGG + chr2_1:37591509-37591528 Msa0207180:intron 45.0%
GACAAACCTTGCAATTTCGG+GGG + chr2_1:37593476-37593495 Msa0207180:intron 45.0%
ACAAACCTTGCAATTTCGGG+GGG + chr2_1:37593477-37593496 Msa0207180:intron 45.0%
!! GCGGTTATTTCTAAAGTGGG+TGG + chr2_1:37594034-37594053 Msa0207180:intron 45.0%
ATAGGCTTGACAAATGGCCA+AGG + chr2_1:37594267-37594286 Msa0207180:intron 45.0%
TAGGCTTGACAAATGGCCAA+GGG + chr2_1:37594268-37594287 Msa0207180:intron 45.0%
AACCCACTAAAAAGAGGGAC+GGG - chr2_1:37594314-37594333 None:intergenic 45.0%
! ATGGTAGCTTTGCTCTTCTC+TGG + chr2_1:37594702-37594721 Msa0207180:CDS 45.0%
! ATTGGTGTCCTTGCTGAGAA+AGG + chr2_1:37594744-37594763 Msa0207180:CDS 45.0%
GTGAGTTTCCTTTCTCAGCA+AGG - chr2_1:37594755-37594774 None:intergenic 45.0%
CTTCGATGAAGTCTCAAAGC+AGG - chr2_1:37594891-37594910 None:intergenic 45.0%
! GTCTCCAAAAGCATGCATCT+AGG - chr2_1:37594919-37594938 None:intergenic 45.0%
!! TAAAAAAAATCTTATAATTA+AGG - chr2_1:37590833-37590852 None:intergenic 5.0%
!! TAACAAAATAATTAAATAAT+TGG - chr2_1:37591548-37591567 None:intergenic 5.0%
!! AAAAAAATATTAAAAAATTC+TGG + chr2_1:37592340-37592359 Msa0207180:intron 5.0%
!!! TATTTTTAAATATAAGAAAT+CGG + chr2_1:37593844-37593863 Msa0207180:intron 5.0%
!!! TTATTGATTTTTTTTTTTTA+CGG - chr2_1:37594541-37594560 None:intergenic 5.0%
!! GGTTCTAAGGCTTTGTGCCT+TGG + chr2_1:37590454-37590473 Msa0207180:CDS 50.0%
AGGGTCCGACATTCAAATCC+CGG - chr2_1:37591077-37591096 None:intergenic 50.0%
CAAACCTTGCAATTTCGGGG+GGG + chr2_1:37593478-37593497 Msa0207180:intron 50.0%
ATTTCCCCCCCGAAATTGCA+AGG - chr2_1:37593485-37593504 None:intergenic 50.0%
!! CATGGTTGGCTCGAATTGAC+CGG - chr2_1:37593649-37593668 None:intergenic 50.0%
AGGCTTGACAAATGGCCAAG+GGG + chr2_1:37594269-37594288 Msa0207180:intron 50.0%
AAAGAGGGACGGGCCTAAAT+GGG - chr2_1:37594304-37594323 None:intergenic 50.0%
AAAAGAGGGACGGGCCTAAA+TGG - chr2_1:37594305-37594324 None:intergenic 50.0%
GCGGATAGACTTAAGAGACC+AGG + chr2_1:37594341-37594360 Msa0207180:intron 50.0%
GCTTTGCTCTTCTCTGGCAA+TGG + chr2_1:37594708-37594727 Msa0207180:CDS 50.0%
TCAAACATGCAGCAGCAGCT+TGG - chr2_1:37594824-37594843 None:intergenic 50.0%
!! CAGGAAGCATCACAAGAGAG+AGG - chr2_1:37594872-37594891 None:intergenic 50.0%
GGTGGCCGGGATTTGAATGT+CGG + chr2_1:37591069-37591088 Msa0207180:intron 55.0%
TCATATATGCCCCACGGGCT+AGG + chr2_1:37591514-37591533 Msa0207180:intron 55.0%
ATCGGATCGACGGACACTTG+TGG + chr2_1:37594012-37594031 Msa0207180:intron 55.0%
TTGACAAATGGCCAAGGGGC+TGG + chr2_1:37594273-37594292 Msa0207180:intron 55.0%
AATGGGACATACCAGCCCCT+TGG - chr2_1:37594287-37594306 None:intergenic 55.0%
! GGGGCTGGTATGTCCCATTT+AGG + chr2_1:37594288-37594307 Msa0207180:intron 55.0%
! AGGCCCGTCCCTCTTTTTAG+TGG + chr2_1:37594308-37594327 Msa0207180:intron 55.0%
!! GGCCCGTCCCTCTTTTTAGT+GGG + chr2_1:37594309-37594328 Msa0207180:intron 55.0%
AATGGAGCTGCCTGGGCTAT+TGG + chr2_1:37594726-37594745 Msa0207180:CDS 55.0%
AGCAAGGACACCAATAGCCC+AGG - chr2_1:37594739-37594758 None:intergenic 55.0%
GGATCGACGGACACTTGTGG+CGG + chr2_1:37594015-37594034 Msa0207180:intron 60.0%
TCTCTGGCAATGGAGCTGCC+TGG + chr2_1:37594718-37594737 Msa0207180:CDS 60.0%
CTCTGGCAATGGAGCTGCCT+GGG + chr2_1:37594719-37594738 Msa0207180:CDS 60.0%
!! TATGCCCCACGGGCTAGGCT+AGG + chr2_1:37591519-37591538 Msa0207180:intron 65.0%
GAGTCCTAGCCTAGCCCGTG+GGG - chr2_1:37591526-37591545 None:intergenic 65.0%
GGAGTCCTAGCCTAGCCCGT+GGG - chr2_1:37591527-37591546 None:intergenic 65.0%
TGGAGTCCTAGCCTAGCCCG+TGG - chr2_1:37591528-37591547 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 37590017 37595171 37590017 ID=Msa0207180;Name=Msa0207180
chr2_1 mRNA 37590017 37595171 37590017 ID=Msa0207180-mRNA-1;Parent=Msa0207180;Name=Msa0207180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=363|1|1|1|1|1|2|251|189
chr2_1 exon 37590017 37590609 37590017 ID=Msa0207180-mRNA-1:exon:12177;Parent=Msa0207180-mRNA-1
chr2_1 exon 37594581 37595171 37594581 ID=Msa0207180-mRNA-1:exon:12178;Parent=Msa0207180-mRNA-1
chr2_1 five_prime_UTR 37590017 37590379 37590017 ID=Msa0207180-mRNA-1:five_prime_utr;Parent=Msa0207180-mRNA-1
chr2_1 CDS 37590380 37590609 37590380 ID=Msa0207180-mRNA-1:cds;Parent=Msa0207180-mRNA-1
chr2_1 CDS 37594581 37594920 37594581 ID=Msa0207180-mRNA-1:cds;Parent=Msa0207180-mRNA-1
chr2_1 three_prime_UTR 37594921 37595171 37594921 ID=Msa0207180-mRNA-1:three_prime_utr;Parent=Msa0207180-mRNA-1
Gene Sequence

>Msa0207180

ATGGAGGTTCAAAGTAGTAAAGAGTTGAAGGAAATTGTGGTGGTAAAGTCTTCACTAGAAGGAACTTGTAGTTTGGTTCTAAGGCTTTGTGCCTTGGTTCTAACACTTACGGCTGCTATAGTACTTGTTGCAGATAAACAAACCACAGTTGTTCCAGTTAAGATTTCAGATTCTTTACCACCTTTGGATGTTCCTGTTACTGCTAAGTGGCAATACATGTCTGCCTATGTGTATTTTGTGGTGGCAAATGTTATAGCATTTGCATATGCAACCTTGTCTTTCATTATTGCTCTTGCAAATGGGCATAAAAGCAAATGGTTAGTGACATTGGTGACTCTACTTGACGCAATAATGGTAGCTTTGCTCTTCTCTGGCAATGGAGCTGCCTGGGCTATTGGTGTCCTTGCTGAGAAAGGAAACTCACATGTGCTATGGAACAAAGTGTGTCATGTCTTTGACAAATTTTGCAACCAAGCTGCTGCTGCATGTTTGATTTCACTTCTTGGATCAGTATTTTTCCTCTCTCTTGTGATGCTTCCTGCTTTGAGACTTCATCGAAGAAGAACCTAG

Protein sequence

>Msa0207180

MEVQSSKELKEIVVVKSSLEGTCSLVLRLCALVLTLTAAIVLVADKQTTVVPVKISDSLPPLDVPVTAKWQYMSAYVYFVVANVIAFAYATLSFIIALANGHKSKWLVTLVTLLDAIMVALLFSGNGAAWAIGVLAEKGNSHVLWNKVCHVFDKFCNQAAAACLISLLGSVFFLSLVMLPALRLHRRRT*