Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661570 | XP_003603847.1 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 8.42e-125 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661570 | sp|Q5M7D4|CNPY1_XENLA | 30.216 | 139 | 80 | 5 | 25 | 150 | 29 | 163 | 9.64e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661570 | G7J5Y0 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 4.02e-125 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0436030 | Msa0661570 | 0.836503 | 9.006640e-57 | -8.615850e-47 |
| Msa0506670 | Msa0661570 | 0.830874 | 2.296610e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661570 | MtrunA17_Chr3g0144101 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 7.74e-129 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661570 | AT1G42480.1 | 66.867 | 166 | 49 | 4 | 5 | 165 | 1 | 165 | 8.39e-69 | 207 |
| Msa0661570 | AT1G42480.3 | 55.689 | 167 | 66 | 6 | 5 | 165 | 1 | 165 | 2.61e-52 | 165 |
| Msa0661570 | AT1G42480.2 | 62.500 | 112 | 37 | 3 | 5 | 111 | 1 | 112 | 9.35e-38 | 127 |
Find 59 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAAGGCACACTTTC+GGG | 0.186428 | 4_3:+73065598 | None:intergenic |
| TTTGAATCTGGCGTTGATTT+TGG | 0.235779 | 4_3:-73065535 | Msa0661570:five_prime_UTR |
| GCTTTAAATCCCTGGATATT+GGG | 0.262963 | 4_3:-73062569 | Msa0661570:exon |
| AGCTTTAAATCCCTGGATAT+TGG | 0.265830 | 4_3:-73062570 | Msa0661570:exon |
| CTCTGGTGTTTGTTTGAATC+TGG | 0.280494 | 4_3:-73065547 | Msa0661570:five_prime_UTR |
| TATTACCGCAACAGCTTTAC+AGG | 0.286682 | 4_3:+73065399 | None:intergenic |
| AAGTCTGACTTTATCTTGTT+TGG | 0.300895 | 4_3:-73065622 | None:intergenic |
| AAGGAAAGTTAATTGATTAC+AGG | 0.326013 | 4_3:-73065103 | Msa0661570:intron |
| GGTGGCTGGAAATCTGCCTT+TGG | 0.341948 | 4_3:-73062547 | Msa0661570:three_prime_UTR |
| GAAGGAGTGGATATCAAATA+AGG | 0.348229 | 4_3:+73065586 | None:intergenic |
| GAAGTCACATTCATATTAAC+AGG | 0.355937 | 4_3:+73062337 | None:intergenic |
| CATTACCTCTCTGAATTAAC+AGG | 0.382670 | 4_3:+73062274 | None:intergenic |
| TATCAAATAAGGCACACTTT+CGG | 0.400897 | 4_3:+73065597 | None:intergenic |
| GGCCCTTGGCGTCCAAGCGA+TGG | 0.403071 | 4_3:+73065132 | None:intergenic |
| TTGTACCATTCACGTGAGTC+TGG | 0.406568 | 4_3:+73064778 | None:intergenic |
| GGAGAAGCCACGCAATCATT+TGG | 0.416159 | 4_3:-73065162 | Msa0661570:CDS |
| AATGGTACAAAGTGGGTAGC+TGG | 0.417636 | 4_3:-73064765 | Msa0661570:CDS |
| AGAATACACCACAAAATTGA+TGG | 0.418721 | 4_3:-73062508 | Msa0661570:three_prime_UTR |
| TTTGGATATGCGCCATCGCT+TGG | 0.421993 | 4_3:-73065144 | Msa0661570:CDS |
| TCCCTGGATATTGGGGTGGC+TGG | 0.434164 | 4_3:-73062561 | Msa0661570:three_prime_UTR |
| CTTTCCTTGACGCTGGCCCT+TGG | 0.438754 | 4_3:+73065118 | None:intergenic |
| CTTTCTTGTCTTAACAACTC+TGG | 0.441541 | 4_3:-73065564 | Msa0661570:five_prime_UTR |
| TTCCAGCCACCCCAATATCC+AGG | 0.442909 | 4_3:+73062559 | None:intergenic |
| GTGGCTGGAAATCTGCCTTT+GGG | 0.448695 | 4_3:-73062546 | Msa0661570:three_prime_UTR |
| CAGCGAAGTAATAGATCAAA+AGG | 0.449939 | 4_3:-73065503 | Msa0661570:five_prime_UTR |
| AAAGAAAGGGTCTGTTAAAG+TGG | 0.463167 | 4_3:-73063697 | Msa0661570:CDS |
| CTGGCTGAGTTGATAAAGAA+AGG | 0.469807 | 4_3:-73063711 | Msa0661570:CDS |
| GATAGAGAGCTTTAAATCCC+TGG | 0.487170 | 4_3:-73062577 | Msa0661570:exon |
| AAAGACATCTCTTCTTATTG+TGG | 0.488099 | 4_3:-73064015 | Msa0661570:CDS |
| GCGCCATCGCTTGGACGCCA+AGG | 0.499179 | 4_3:-73065135 | Msa0661570:CDS |
| TGTCTCTTTCTCTTACTCAT+CGG | 0.520953 | 4_3:-73065454 | Msa0661570:CDS |
| TGGCTGAGTTGATAAAGAAA+GGG | 0.524427 | 4_3:-73063710 | Msa0661570:CDS |
| CGGCAGATAAACAAGAAGCT+CGG | 0.525161 | 4_3:-73064047 | Msa0661570:intron |
| GGCAGATAAACAAGAAGCTC+GGG | 0.526546 | 4_3:-73064046 | Msa0661570:intron |
| CTTTAAATCCCTGGATATTG+GGG | 0.526672 | 4_3:-73062568 | Msa0661570:exon |
| GACGCCAAGGGCCAGCGTCA+AGG | 0.528946 | 4_3:-73065122 | Msa0661570:CDS |
| TAAATCCCTGGATATTGGGG+TGG | 0.542271 | 4_3:-73062565 | Msa0661570:three_prime_UTR |
| TTCTAACTCCAACTACAAAA+CGG | 0.543121 | 4_3:+73062479 | None:intergenic |
| ACATCTCTTCTTATTGTGGA+AGG | 0.544834 | 4_3:-73064011 | Msa0661570:intron |
| AGTTGTTAAGACAAGAAAGA+AGG | 0.548594 | 4_3:+73065568 | None:intergenic |
| TATTTCCAGACTCACGTGAA+TGG | 0.557714 | 4_3:-73064783 | Msa0661570:CDS |
| AAGAAAGGGTCTGTTAAAGT+GGG | 0.567167 | 4_3:-73063696 | Msa0661570:CDS |
| CGCCATCGCTTGGACGCCAA+GGG | 0.570318 | 4_3:-73065134 | Msa0661570:CDS |
| ATGGTACAAAGTGGGTAGCT+GGG | 0.571166 | 4_3:-73064764 | Msa0661570:CDS |
| CAATTAACTTTCCTTGACGC+TGG | 0.576455 | 4_3:+73065111 | None:intergenic |
| TTAAGACAAGAAAGAAGGAG+TGG | 0.578074 | 4_3:+73065573 | None:intergenic |
| CGCATATCCAAATGATTGCG+TGG | 0.578635 | 4_3:+73065155 | None:intergenic |
| AGATGCAAGACTACACACTC+AGG | 0.588888 | 4_3:-73064902 | Msa0661570:CDS |
| GGCAGCACATTTATCATCAA+CGG | 0.592234 | 4_3:+73065420 | None:intergenic |
| GCAAACACTGCGGTCAGACA+AGG | 0.596885 | 4_3:-73063641 | Msa0661570:intron |
| TGCTGCCTGTAAAGCTGTTG+CGG | 0.598705 | 4_3:-73065404 | Msa0661570:intron |
| TCCAGCCACCCCAATATCCA+GGG | 0.599207 | 4_3:+73062560 | None:intergenic |
| ACTTGAAGAAACAGAAGATG+AGG | 0.604644 | 4_3:-73063834 | Msa0661570:intron |
| TGGAGTGCATACTTGTTCTG+AGG | 0.608571 | 4_3:+73064737 | None:intergenic |
| CTCACGTGAATGGTACAAAG+TGG | 0.626266 | 4_3:-73064773 | Msa0661570:CDS |
| TCACGTGAATGGTACAAAGT+GGG | 0.659626 | 4_3:-73064772 | Msa0661570:CDS |
| GATGCAAGACTACACACTCA+GGG | 0.682191 | 4_3:-73064901 | Msa0661570:intron |
| CAGTGTATCAGATGAGACAG+AGG | 0.704867 | 4_3:-73062608 | Msa0661570:CDS |
| CAAGATTTGAGCAAACACTG+CGG | 0.793006 | 4_3:-73063651 | Msa0661570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAAATACTAAATATA+AGG | + | chr4_3:73063527-73063546 | None:intergenic | 10.0% |
| !! | TTAATATCATTATTTATTGA+TGG | - | chr4_3:73064397-73064416 | Msa0661570:intron | 10.0% |
| !! | AATTGTTAAATAATAAATAC+AGG | + | chr4_3:73065221-73065240 | None:intergenic | 10.0% |
| !! | AATATGTAAGAATTAAGATA+AGG | + | chr4_3:73063058-73063077 | None:intergenic | 15.0% |
| !! | TGATGAGTAAATATTTATAA+AGG | - | chr4_3:73063795-73063814 | Msa0661570:intron | 15.0% |
| !!! | TAACTTTAATATTTTTCAAC+AGG | - | chr4_3:73063942-73063961 | Msa0661570:intron | 15.0% |
| !!! | AACTTTAATATTTTTCAACA+GGG | - | chr4_3:73063943-73063962 | Msa0661570:intron | 15.0% |
| !!! | AAATAAGTATGATTTGGATT+GGG | + | chr4_3:73062553-73062572 | None:intergenic | 20.0% |
| !!! | TAAATAAGTATGATTTGGAT+TGG | + | chr4_3:73062554-73062573 | None:intergenic | 20.0% |
| !! | GAAACTAAATAAGTATGATT+TGG | + | chr4_3:73062559-73062578 | None:intergenic | 20.0% |
| !!! | TAGATACATTTTTCTTTCAT+CGG | + | chr4_3:73062870-73062889 | None:intergenic | 20.0% |
| !!! | TTTAGCATGTTTTTCTTTTA+AGG | + | chr4_3:73063280-73063299 | None:intergenic | 20.0% |
| !! | TATTACAAAAACTTATATGC+AGG | - | chr4_3:73063490-73063509 | Msa0661570:intron | 20.0% |
| !! | TTTAATTCTGATGAGTTATT+TGG | - | chr4_3:73063822-73063841 | Msa0661570:intron | 20.0% |
| !! | TTAAAGTTAAAACATAAACC+TGG | + | chr4_3:73063931-73063950 | None:intergenic | 20.0% |
| !!! | ACTTTAATATTTTTCAACAG+GGG | - | chr4_3:73063944-73063963 | Msa0661570:intron | 20.0% |
| !! | TATCAAAAACCATATTTAGA+AGG | - | chr4_3:73064937-73064956 | Msa0661570:CDS | 20.0% |
| !!! | ATTTTAGAACCTTCTAAATA+TGG | + | chr4_3:73064949-73064968 | None:intergenic | 20.0% |
| !! | AACAAAAAAAAAATTCTGAC+TGG | + | chr4_3:73065061-73065080 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTTGTTGATAA+AGG | - | chr4_3:73065076-73065095 | Msa0661570:intron | 20.0% |
| !!! | GTTAATTTTTAATTTCCCAA+AGG | + | chr4_3:73065378-73065397 | None:intergenic | 20.0% |
| !!! | TAAGAGACATTTTAATGATA+CGG | - | chr4_3:73065470-73065489 | Msa0661570:CDS | 20.0% |
| ! | ATAAAAACATGTGACTTACA+CGG | + | chr4_3:73062655-73062674 | None:intergenic | 25.0% |
| ! | CTGATTAAATGTAAATCCAA+TGG | + | chr4_3:73062725-73062744 | None:intergenic | 25.0% |
| ! | CATTGGATTTACATTTAATC+AGG | - | chr4_3:73062723-73062742 | Msa0661570:intron | 25.0% |
| ! | AAGGAAAGTTAATTGATTAC+AGG | - | chr4_3:73062803-73062822 | Msa0661570:intron | 25.0% |
| ! | TAAATCAAAGGTAGATGAAA+TGG | + | chr4_3:73063192-73063211 | None:intergenic | 25.0% |
| !! | AATCGATTAAGTAAGAGTTT+TGG | + | chr4_3:73063251-73063270 | None:intergenic | 25.0% |
| !! | AAAACATGCTAAAGTTTTCA+TGG | - | chr4_3:73063287-73063306 | Msa0661570:intron | 25.0% |
| ! | TCCAAACATGTTAGAATAAA+CGG | + | chr4_3:73063368-73063387 | None:intergenic | 25.0% |
| ! | TTGTTGTGTCAGAATTAAAT+GGG | - | chr4_3:73063460-73063479 | Msa0661570:intron | 25.0% |
| !! | CTTGCAAAACATGTATATTT+TGG | + | chr4_3:73063557-73063576 | None:intergenic | 25.0% |
| ! | CGTGTATAACTTAAGTATTA+AGG | - | chr4_3:73063653-73063672 | Msa0661570:CDS | 25.0% |
| ! | ATTTGGACAAATAATGTTCT+CGG | - | chr4_3:73063839-73063858 | Msa0661570:CDS | 25.0% |
| !! | CTTAAACCATACAAACTTTT+GGG | + | chr4_3:73064377-73064396 | None:intergenic | 25.0% |
| !! | ACTTAAACCATACAAACTTT+TGG | + | chr4_3:73064378-73064397 | None:intergenic | 25.0% |
| !!! | TTGTAACATTTTAGAACCTT+AGG | + | chr4_3:73064846-73064865 | None:intergenic | 25.0% |
| ! | ATGTCTATTGTTTGATGTTT+AGG | + | chr4_3:73065179-73065198 | None:intergenic | 25.0% |
| ! | TGTCTCTTAATTGAGAAAAA+TGG | + | chr4_3:73065459-73065478 | None:intergenic | 25.0% |
| TATCAAATAAGGCACACTTT+CGG | + | chr4_3:73062312-73062331 | None:intergenic | 30.0% | |
| AGTTGTTAAGACAAGAAAGA+AGG | + | chr4_3:73062341-73062360 | None:intergenic | 30.0% | |
| TAAAAACATGTGACTTACAC+GGG | + | chr4_3:73062654-73062673 | None:intergenic | 30.0% | |
| GAATCTGAGTATGACAATAT+AGG | + | chr4_3:73062835-73062854 | None:intergenic | 30.0% | |
| GAATTAAGATAAGGAACCAA+TGG | + | chr4_3:73063049-73063068 | None:intergenic | 30.0% | |
| !! | TATTCTAGAATGAGCGTTAT+TGG | - | chr4_3:73063074-73063093 | Msa0661570:intron | 30.0% |
| AAATTTCATGAAGTCAAGCA+TGG | + | chr4_3:73063215-73063234 | None:intergenic | 30.0% | |
| CCAAACATGTTAGAATAAAC+GGG | + | chr4_3:73063367-73063386 | None:intergenic | 30.0% | |
| ! | TCTAACATGTTTGGATTTTC+TGG | - | chr4_3:73063373-73063392 | Msa0661570:intron | 30.0% |
| ! | CTTGTTGTGTCAGAATTAAA+TGG | - | chr4_3:73063459-73063478 | Msa0661570:intron | 30.0% |
| GAAATATGGACTTCAAAATC+AGG | + | chr4_3:73063625-73063644 | None:intergenic | 30.0% | |
| TGAAGTCCATATTTCACATT+TGG | - | chr4_3:73063630-73063649 | Msa0661570:intron | 30.0% | |
| AAAGACATCTCTTCTTATTG+TGG | - | chr4_3:73063891-73063910 | Msa0661570:intron | 30.0% | |
| ! | TTTTCAACAGGGGATATTTA+TGG | - | chr4_3:73063954-73063973 | Msa0661570:intron | 30.0% |
| ! | TTCTGTTTCTTCAAGTAATC+TGG | + | chr4_3:73064068-73064087 | None:intergenic | 30.0% |
| ! | TTACGATTCACTAGATTTTC+TGG | - | chr4_3:73064318-73064337 | Msa0661570:intron | 30.0% |
| ! | TACGATTCACTAGATTTTCT+GGG | - | chr4_3:73064319-73064338 | Msa0661570:intron | 30.0% |
| TTATTGATGGAGAACATCTT+AGG | - | chr4_3:73064410-73064429 | Msa0661570:intron | 30.0% | |
| ! | TTTCATTCAGTACTAGTTTG+AGG | - | chr4_3:73064433-73064452 | Msa0661570:intron | 30.0% |
| AGAATTCTCTAACATCCATT+TGG | - | chr4_3:73064595-73064614 | Msa0661570:intron | 30.0% | |
| CAATTACCAAATACTCTTCA+CGG | - | chr4_3:73064619-73064638 | Msa0661570:intron | 30.0% | |
| CTTGTGTAAAAAATAGGGTA+AGG | + | chr4_3:73064730-73064749 | None:intergenic | 30.0% | |
| !!! | TACCCTATTTTTTACACAAG+AGG | - | chr4_3:73064730-73064749 | Msa0661570:intron | 30.0% |
| AGCCTCTTGTGTAAAAAATA+GGG | + | chr4_3:73064735-73064754 | None:intergenic | 30.0% | |
| TAGGTAAGATTGAACAAAGA+GGG | + | chr4_3:73064827-73064846 | None:intergenic | 30.0% | |
| TTAGGTAAGATTGAACAAAG+AGG | + | chr4_3:73064828-73064847 | None:intergenic | 30.0% | |
| TCTTTGTTCAATCTTACCTA+AGG | - | chr4_3:73064827-73064846 | Msa0661570:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr4_3:73064929-73064948 | None:intergenic | 30.0% |
| ! | GTTCTCTGTAGTTATCATTT+TGG | + | chr4_3:73064984-73065003 | None:intergenic | 30.0% |
| ACAAGAAAGCAATAAAAGTC+AGG | - | chr4_3:73065100-73065119 | Msa0661570:intron | 30.0% | |
| CTGAATCCTATACAAAGATA+GGG | - | chr4_3:73065129-73065148 | Msa0661570:CDS | 30.0% | |
| TGAATCCTATACAAAGATAG+GGG | - | chr4_3:73065130-73065149 | Msa0661570:CDS | 30.0% | |
| ! | GTTTGATGTTTAGGTTTGTT+GGG | + | chr4_3:73065170-73065189 | None:intergenic | 30.0% |
| ! | TGTTTGATGTTTAGGTTTGT+TGG | + | chr4_3:73065171-73065190 | None:intergenic | 30.0% |
| AGAATACACCACAAAATTGA+TGG | - | chr4_3:73065398-73065417 | Msa0661570:intron | 30.0% | |
| TTCTAACTCCAACTACAAAA+CGG | + | chr4_3:73065430-73065449 | None:intergenic | 30.0% | |
| GAAGTCACATTCATATTAAC+AGG | + | chr4_3:73065572-73065591 | None:intergenic | 30.0% | |
| ATCAAATAAGGCACACTTTC+GGG | + | chr4_3:73062311-73062330 | None:intergenic | 35.0% | |
| GAAGGAGTGGATATCAAATA+AGG | + | chr4_3:73062323-73062342 | None:intergenic | 35.0% | |
| TTAAGACAAGAAAGAAGGAG+TGG | + | chr4_3:73062336-73062355 | None:intergenic | 35.0% | |
| CTTTCTTGTCTTAACAACTC+TGG | - | chr4_3:73062342-73062361 | Msa0661570:three_prime_UTR | 35.0% | |
| !!! | TTTGAATCTGGCGTTGATTT+TGG | - | chr4_3:73062371-73062390 | Msa0661570:three_prime_UTR | 35.0% |
| ! | CTTTTGATCTATTACTTCGC+TGG | + | chr4_3:73062405-73062424 | None:intergenic | 35.0% |
| CAGCGAAGTAATAGATCAAA+AGG | - | chr4_3:73062403-73062422 | Msa0661570:three_prime_UTR | 35.0% | |
| TGTCTCTTTCTCTTACTCAT+CGG | - | chr4_3:73062452-73062471 | Msa0661570:three_prime_UTR | 35.0% | |
| ! | TAAGTATGATTTGGATTGGG+AGG | + | chr4_3:73062550-73062569 | None:intergenic | 35.0% |
| CCAATGGTTGAATGAATGAA+TGG | + | chr4_3:73062709-73062728 | None:intergenic | 35.0% | |
| CCATTCATTCATTCAACCAT+TGG | - | chr4_3:73062706-73062725 | Msa0661570:intron | 35.0% | |
| ! | AGTCTTGCATCTTTTCACAA+AGG | + | chr4_3:73062996-73063015 | None:intergenic | 35.0% |
| CGTGCTTAATTACTTTCCAT+TGG | - | chr4_3:73063030-73063049 | Msa0661570:intron | 35.0% | |
| AGTCAAGCATGGTAAATCAA+AGG | + | chr4_3:73063204-73063223 | None:intergenic | 35.0% | |
| ! | GTTTTCATGGAAAAGAACTG+AGG | - | chr4_3:73063300-73063319 | Msa0661570:intron | 35.0% |
| CCCGTTTATTCTAACATGTT+TGG | - | chr4_3:73063364-73063383 | Msa0661570:intron | 35.0% | |
| TACACGCCAAATGTGAAATA+TGG | + | chr4_3:73063639-73063658 | None:intergenic | 35.0% | |
| TTCATACTCGTTACTCGTTA+AGG | + | chr4_3:73063694-73063713 | None:intergenic | 35.0% | |
| ACAACTTAAACGCTAAACAC+TGG | + | chr4_3:73063749-73063768 | None:intergenic | 35.0% | |
| ACATCTCTTCTTATTGTGGA+AGG | - | chr4_3:73063895-73063914 | Msa0661570:intron | 35.0% | |
| TTCTTATTGTGGAAGGTAAG+AGG | - | chr4_3:73063902-73063921 | Msa0661570:intron | 35.0% | |
| TCACTTCTCGCAAAAGATAA+TGG | + | chr4_3:73063993-73064012 | None:intergenic | 35.0% | |
| ACTTGAAGAAACAGAAGATG+AGG | - | chr4_3:73064072-73064091 | Msa0661570:intron | 35.0% | |
| !! | TGGCTGAGTTGATAAAGAAA+GGG | - | chr4_3:73064196-73064215 | Msa0661570:intron | 35.0% |
| AAAGAAAGGGTCTGTTAAAG+TGG | - | chr4_3:73064209-73064228 | Msa0661570:intron | 35.0% | |
| AAGAAAGGGTCTGTTAAAGT+GGG | - | chr4_3:73064210-73064229 | Msa0661570:intron | 35.0% | |
| TAGTTGACCTTTGACATATG+TGG | - | chr4_3:73064522-73064541 | Msa0661570:intron | 35.0% | |
| AGTTGACCTTTGACATATGT+GGG | - | chr4_3:73064523-73064542 | Msa0661570:intron | 35.0% | |
| ! | GTATTTGGTAATTGGCCAAA+TGG | + | chr4_3:73064613-73064632 | None:intergenic | 35.0% |
| !! | CGTGAAGAGTATTTGGTAAT+TGG | + | chr4_3:73064621-73064640 | None:intergenic | 35.0% |
| !! | AACAAACCGTGAAGAGTATT+TGG | + | chr4_3:73064628-73064647 | None:intergenic | 35.0% |
| CAGCCTCTTGTGTAAAAAAT+AGG | + | chr4_3:73064736-73064755 | None:intergenic | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr4_3:73064785-73064804 | None:intergenic | 35.0% | |
| AGGTAAGATTGAACAAAGAG+GGG | + | chr4_3:73064826-73064845 | None:intergenic | 35.0% | |
| !!! | TATTTTAATCTTCCCCCGTA+AGG | + | chr4_3:73065010-73065029 | None:intergenic | 35.0% |
| AAAGCAATAAAAGTCAGGAG+AGG | - | chr4_3:73065105-73065124 | Msa0661570:CDS | 35.0% | |
| CCTATCTTTGTATAGGATTC+AGG | + | chr4_3:73065131-73065150 | None:intergenic | 35.0% | |
| CCTGAATCCTATACAAAGAT+AGG | - | chr4_3:73065128-73065147 | Msa0661570:CDS | 35.0% | |
| GAATCCTATACAAAGATAGG+GGG | - | chr4_3:73065131-73065150 | Msa0661570:CDS | 35.0% | |
| AATCCTATACAAAGATAGGG+GGG | - | chr4_3:73065132-73065151 | Msa0661570:CDS | 35.0% | |
| !!! | TGTTTAGGTTTGTTGGGTTT+TGG | + | chr4_3:73065164-73065183 | None:intergenic | 35.0% |
| !! | AGCTTTAAATCCCTGGATAT+TGG | - | chr4_3:73065336-73065355 | Msa0661570:intron | 35.0% |
| ! | GCTTTAAATCCCTGGATATT+GGG | - | chr4_3:73065337-73065356 | Msa0661570:intron | 35.0% |
| CTTTAAATCCCTGGATATTG+GGG | - | chr4_3:73065338-73065357 | Msa0661570:intron | 35.0% | |
| CTCTGGTGTTTGTTTGAATC+TGG | - | chr4_3:73062359-73062378 | Msa0661570:three_prime_UTR | 40.0% | |
| GGCAGCACATTTATCATCAA+CGG | + | chr4_3:73062489-73062508 | None:intergenic | 40.0% | |
| TATTACCGCAACAGCTTTAC+AGG | + | chr4_3:73062510-73062529 | None:intergenic | 40.0% | |
| TGGGAGGAATGAAAATGAAG+AGG | + | chr4_3:73062534-73062553 | None:intergenic | 40.0% | |
| CAATTAACTTTCCTTGACGC+TGG | + | chr4_3:73062798-73062817 | None:intergenic | 40.0% | |
| TATTTCCAGACTCACGTGAA+TGG | - | chr4_3:73063123-73063142 | Msa0661570:intron | 40.0% | |
| TCACGTGAATGGTACAAAGT+GGG | - | chr4_3:73063134-73063153 | Msa0661570:intron | 40.0% | |
| GCATTTGCATTGTAAGTGAC+AGG | + | chr4_3:73063603-73063622 | None:intergenic | 40.0% | |
| !! | CTGGCTGAGTTGATAAAGAA+AGG | - | chr4_3:73064195-73064214 | Msa0661570:intron | 40.0% |
| CAAGATTTGAGCAAACACTG+CGG | - | chr4_3:73064255-73064274 | Msa0661570:intron | 40.0% | |
| TTGTTGTAGTCGTAGCTTTC+AGG | - | chr4_3:73064348-73064367 | Msa0661570:intron | 40.0% | |
| TGTTGTAGTCGTAGCTTTCA+GGG | - | chr4_3:73064349-73064368 | Msa0661570:intron | 40.0% | |
| ! | AGGGTACCCAAAAGTTTGTA+TGG | - | chr4_3:73064368-73064387 | Msa0661570:intron | 40.0% |
| TCATTACTATAAGCCCCATC+AGG | + | chr4_3:73064484-73064503 | None:intergenic | 40.0% | |
| GTTGACCTTTGACATATGTG+GGG | - | chr4_3:73064524-73064543 | Msa0661570:intron | 40.0% | |
| CTAATCCCCACATATGTCAA+AGG | + | chr4_3:73064532-73064551 | None:intergenic | 40.0% | |
| CTTTGACATATGTGGGGATT+AGG | - | chr4_3:73064530-73064549 | Msa0661570:intron | 40.0% | |
| ! | ACGGTTTGTTCAATCTTACC+TGG | - | chr4_3:73064638-73064657 | Msa0661570:intron | 40.0% |
| CGTACAATACACCAAATGGT+GGG | + | chr4_3:73064704-73064723 | None:intergenic | 40.0% | |
| ACTACAGAGAACCTACCTTA+CGG | - | chr4_3:73064992-73065011 | Msa0661570:intron | 40.0% | |
| !! | GATAGAGAGCTTTAAATCCC+TGG | - | chr4_3:73065329-73065348 | Msa0661570:intron | 40.0% |
| ! | GGACAACACCATCAATTTTG+TGG | + | chr4_3:73065409-73065428 | None:intergenic | 40.0% |
| CCTGCAACACAGCATAGAAT+CGG | + | chr4_3:73062610-73062629 | None:intergenic | 45.0% | |
| CGATTCTATGCTGTGTTGCA+GGG | - | chr4_3:73062608-73062627 | Msa0661570:CDS | 45.0% | |
| GATTCTATGCTGTGTTGCAG+GGG | - | chr4_3:73062609-73062628 | Msa0661570:intron | 45.0% | |
| ATTCTATGCTGTGTTGCAGG+GGG | - | chr4_3:73062610-73062629 | Msa0661570:intron | 45.0% | |
| CGCATATCCAAATGATTGCG+TGG | + | chr4_3:73062754-73062773 | None:intergenic | 45.0% | |
| AGATGCAAGACTACACACTC+AGG | - | chr4_3:73063004-73063023 | Msa0661570:intron | 45.0% | |
| GATGCAAGACTACACACTCA+GGG | - | chr4_3:73063005-73063024 | Msa0661570:intron | 45.0% | |
| TTGTACCATTCACGTGAGTC+TGG | + | chr4_3:73063131-73063150 | None:intergenic | 45.0% | |
| CTCACGTGAATGGTACAAAG+TGG | - | chr4_3:73063133-73063152 | Msa0661570:intron | 45.0% | |
| AATGGTACAAAGTGGGTAGC+TGG | - | chr4_3:73063141-73063160 | Msa0661570:intron | 45.0% | |
| ATGGTACAAAGTGGGTAGCT+GGG | - | chr4_3:73063142-73063161 | Msa0661570:intron | 45.0% | |
| TGGAGTGCATACTTGTTCTG+AGG | + | chr4_3:73063172-73063191 | None:intergenic | 45.0% | |
| CGGCAGATAAACAAGAAGCT+CGG | - | chr4_3:73063859-73063878 | Msa0661570:intron | 45.0% | |
| GGCAGATAAACAAGAAGCTC+GGG | - | chr4_3:73063860-73063879 | Msa0661570:intron | 45.0% | |
| CACAGATGGTTAGTGCACAA+CGG | + | chr4_3:73064035-73064054 | None:intergenic | 45.0% | |
| ! | TTTGAGGAGCCTTCCTTTTC+TGG | - | chr4_3:73064449-73064468 | Msa0661570:intron | 45.0% |
| AACAACAGGCCAGAAAAGGA+AGG | + | chr4_3:73064461-73064480 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr4_3:73064705-73064724 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr4_3:73064708-73064727 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4_3:73064741-73064760 | Msa0661570:intron | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | + | chr4_3:73064781-73064800 | None:intergenic | 45.0% | |
| TGAACAAAGAGGGGTAACCT+CGG | + | chr4_3:73064817-73064836 | None:intergenic | 45.0% | |
| ! | CAAGTCTTATCCCACTACGT+GGG | - | chr4_3:73064879-73064898 | Msa0661570:intron | 45.0% |
| ! | AAGTCTTATCCCACTACGTG+GGG | - | chr4_3:73064880-73064899 | Msa0661570:intron | 45.0% |
| CTACAGAGAACCTACCTTAC+GGG | - | chr4_3:73064993-73065012 | Msa0661570:intron | 45.0% | |
| TACAGAGAACCTACCTTACG+GGG | - | chr4_3:73064994-73065013 | Msa0661570:intron | 45.0% | |
| TTAATCTTCCCCCGTAAGGT+AGG | + | chr4_3:73065006-73065025 | None:intergenic | 45.0% | |
| AGTCCCCCCTATCTTTGTAT+AGG | + | chr4_3:73065138-73065157 | None:intergenic | 45.0% | |
| ATACAAAGATAGGGGGGACT+AGG | - | chr4_3:73065138-73065157 | Msa0661570:CDS | 45.0% | |
| CAGTGTATCAGATGAGACAG+AGG | - | chr4_3:73065298-73065317 | Msa0661570:intron | 45.0% | |
| TAAATCCCTGGATATTGGGG+TGG | - | chr4_3:73065341-73065360 | Msa0661570:intron | 45.0% | |
| !! | GGTGTTGTCCGTTTTGTAGT+TGG | - | chr4_3:73065419-73065438 | Msa0661570:CDS | 45.0% |
| TGCTGCCTGTAAAGCTGTTG+CGG | - | chr4_3:73062502-73062521 | Msa0661570:three_prime_UTR | 50.0% | |
| CCGATTCTATGCTGTGTTGC+AGG | - | chr4_3:73062607-73062626 | Msa0661570:CDS | 50.0% | |
| GGAGAAGCCACGCAATCATT+TGG | - | chr4_3:73062744-73062763 | Msa0661570:intron | 50.0% | |
| TTTGGATATGCGCCATCGCT+TGG | - | chr4_3:73062762-73062781 | Msa0661570:intron | 50.0% | |
| CTGGTCACAGTACACACAGA+TGG | + | chr4_3:73064049-73064068 | None:intergenic | 50.0% | |
| ACGATGCCATGTCTTGTAGC+TGG | - | chr4_3:73064176-73064195 | Msa0661570:intron | 50.0% | |
| ACTCAGCCAGCTACAAGACA+TGG | + | chr4_3:73064185-73064204 | None:intergenic | 50.0% | |
| CAGGAACAACAGGCCAGAAA+AGG | + | chr4_3:73064465-73064484 | None:intergenic | 50.0% | |
| TTCTGGCCTGTTGTTCCTGA+TGG | - | chr4_3:73064466-73064485 | Msa0661570:intron | 50.0% | |
| TCTGGCCTGTTGTTCCTGAT+GGG | - | chr4_3:73064467-73064486 | Msa0661570:intron | 50.0% | |
| TAAGCCCCATCAGGAACAAC+AGG | + | chr4_3:73064475-73064494 | None:intergenic | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | chr4_3:73064774-73064793 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | + | chr4_3:73064775-73064794 | None:intergenic | 50.0% | |
| ! | CCACGTAGTGGGATAAGACT+TGG | + | chr4_3:73064881-73064900 | None:intergenic | 50.0% |
| ! | CCAAGTCTTATCCCACTACG+TGG | - | chr4_3:73064878-73064897 | Msa0661570:intron | 50.0% |
| ACAGAGAACCTACCTTACGG+GGG | - | chr4_3:73064995-73065014 | Msa0661570:intron | 50.0% | |
| GTGGCTGGAAATCTGCCTTT+GGG | - | chr4_3:73065360-73065379 | Msa0661570:intron | 50.0% | |
| TTGCAGGGGGAGCTAGAGAT+TGG | - | chr4_3:73062623-73062642 | Msa0661570:intron | 55.0% | |
| GTGGAAGGTAAGAGGCAACC+AGG | - | chr4_3:73063910-73063929 | Msa0661570:intron | 55.0% | |
| GCAAACACTGCGGTCAGACA+AGG | - | chr4_3:73064265-73064284 | Msa0661570:intron | 55.0% | |
| CTGGCCTGTTGTTCCTGATG+GGG | - | chr4_3:73064468-73064487 | Msa0661570:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr4_3:73064664-73064683 | Msa0661570:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr4_3:73064665-73064684 | Msa0661570:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr4_3:73064762-73064781 | None:intergenic | 55.0% | |
| CAACTTTACCAGTTGCGCCG+AGG | - | chr4_3:73064797-73064816 | Msa0661570:intron | 55.0% | |
| CTTATCCCACTACGTGGGGT+CGG | - | chr4_3:73064884-73064903 | Msa0661570:intron | 55.0% | |
| TCCAGCCACCCCAATATCCA+GGG | + | chr4_3:73065349-73065368 | None:intergenic | 55.0% | |
| TTCCAGCCACCCCAATATCC+AGG | + | chr4_3:73065350-73065369 | None:intergenic | 55.0% | |
| GGTGGCTGGAAATCTGCCTT+TGG | - | chr4_3:73065359-73065378 | Msa0661570:intron | 55.0% | |
| CTTTCCTTGACGCTGGCCCT+TGG | + | chr4_3:73062791-73062810 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | + | chr4_3:73064659-73064678 | None:intergenic | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr4_3:73064692-73064711 | None:intergenic | 60.0% |
| TGTAGCCGACCCCACGTAGT+GGG | + | chr4_3:73064892-73064911 | None:intergenic | 60.0% | |
| ATGTAGCCGACCCCACGTAG+TGG | + | chr4_3:73064893-73064912 | None:intergenic | 60.0% | |
| ACTACGTGGGGTCGGCTACA+TGG | - | chr4_3:73064892-73064911 | Msa0661570:intron | 60.0% | |
| TCCCTGGATATTGGGGTGGC+TGG | - | chr4_3:73065345-73065364 | Msa0661570:intron | 60.0% | |
| CGCCATCGCTTGGACGCCAA+GGG | - | chr4_3:73062772-73062791 | Msa0661570:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr4_3:73064676-73064695 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr4_3:73064677-73064696 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr4_3:73064676-73064695 | Msa0661570:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr4_3:73064677-73064696 | Msa0661570:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr4_3:73064690-73064709 | Msa0661570:intron | 65.0% | |
| AGGGGTAACCTCGGCGCAAC+TGG | + | chr4_3:73064808-73064827 | None:intergenic | 65.0% | |
| GCGCCATCGCTTGGACGCCA+AGG | - | chr4_3:73062771-73062790 | Msa0661570:intron | 70.0% | |
| GGCCCTTGGCGTCCAAGCGA+TGG | + | chr4_3:73062777-73062796 | None:intergenic | 70.0% | |
| GACGCCAAGGGCCAGCGTCA+AGG | - | chr4_3:73062784-73062803 | Msa0661570:intron | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr4_3:73064670-73064689 | Msa0661570:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr4_3:73064671-73064690 | Msa0661570:intron | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr4_3:73064675-73064694 | Msa0661570:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 73062288 | 73065640 | 73062288 | ID=Msa0661570;Name=Msa0661570 |
| chr4_3 | mRNA | 73062288 | 73065640 | 73062288 | ID=Msa0661570-mRNA-1;Parent=Msa0661570;Name=Msa0661570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=140|1|1|1|1|1|9|297|180 |
| chr4_3 | exon | 73062288 | 73062627 | 73062288 | ID=Msa0661570-mRNA-1:exon:21976;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73063642 | 73063733 | 73063642 | ID=Msa0661570-mRNA-1:exon:21975;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73063835 | 73063859 | 73063835 | ID=Msa0661570-mRNA-1:exon:21974;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73064012 | 73064063 | 73064012 | ID=Msa0661570-mRNA-1:exon:21973;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73064749 | 73064806 | 73064749 | ID=Msa0661570-mRNA-1:exon:21972;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73064902 | 73064971 | 73064902 | ID=Msa0661570-mRNA-1:exon:21971;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73065104 | 73065183 | 73065104 | ID=Msa0661570-mRNA-1:exon:21970;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73065273 | 73065299 | 73065273 | ID=Msa0661570-mRNA-1:exon:21969;Parent=Msa0661570-mRNA-1 |
| chr4_3 | exon | 73065405 | 73065640 | 73065405 | ID=Msa0661570-mRNA-1:exon:21968;Parent=Msa0661570-mRNA-1 |
| chr4_3 | five_prime_UTR | 73065501 | 73065640 | 73065501 | ID=Msa0661570-mRNA-1:five_prime_utr;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73065405 | 73065500 | 73065405 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73065273 | 73065299 | 73065273 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73065104 | 73065183 | 73065104 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73064902 | 73064971 | 73064902 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73064749 | 73064806 | 73064749 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73064012 | 73064063 | 73064012 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73063835 | 73063859 | 73063835 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73063642 | 73063733 | 73063642 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | CDS | 73062585 | 73062627 | 73062585 | ID=Msa0661570-mRNA-1:cds;Parent=Msa0661570-mRNA-1 |
| chr4_3 | three_prime_UTR | 73062288 | 73062584 | 73062288 | ID=Msa0661570-mRNA-1:three_prime_utr;Parent=Msa0661570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
