Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506670 | XP_003603847.1 | 82.938 | 211 | 5 | 1 | 1 | 211 | 1 | 180 | 5.85e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506670 | G7J5Y0 | 82.938 | 211 | 5 | 1 | 1 | 211 | 1 | 180 | 2.79e-117 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0506670 | 0.803754 | 2.998222e-49 | -8.615850e-47 |
| Msa0003890 | Msa0506670 | 0.811021 | 8.621579e-51 | -8.615850e-47 |
| Msa0012080 | Msa0506670 | 0.802529 | 5.373224e-49 | -8.615850e-47 |
| Msa0016060 | Msa0506670 | 0.807028 | 6.174719e-50 | -8.615850e-47 |
| Msa0024710 | Msa0506670 | 0.823101 | 1.660637e-53 | -8.615850e-47 |
| Msa0029310 | Msa0506670 | 0.809194 | 2.134486e-50 | -8.615850e-47 |
| Msa0032090 | Msa0506670 | 0.815779 | 7.762987e-52 | -8.615850e-47 |
| Msa0032430 | Msa0506670 | 0.806662 | 7.377250e-50 | -8.615850e-47 |
| Msa0035130 | Msa0506670 | 0.803073 | 4.149280e-49 | -8.615850e-47 |
| Msa0041720 | Msa0506670 | 0.800629 | 1.317334e-48 | -8.615850e-47 |
| Msa0047110 | Msa0506670 | 0.811297 | 7.513460e-51 | -8.615850e-47 |
| Msa0055740 | Msa0506670 | 0.811318 | 7.434532e-51 | -8.615850e-47 |
| Msa0079380 | Msa0506670 | 0.831164 | 1.948874e-55 | -8.615850e-47 |
| Msa0084380 | Msa0506670 | 0.814868 | 1.237252e-51 | -8.615850e-47 |
| Msa0090570 | Msa0506670 | 0.805175 | 1.515703e-49 | -8.615850e-47 |
| Msa0103250 | Msa0506670 | 0.817100 | 3.928458e-52 | -8.615850e-47 |
| Msa0124060 | Msa0506670 | 0.801928 | 7.143403e-49 | -8.615850e-47 |
| Msa0136070 | Msa0506670 | 0.823652 | 1.234495e-53 | -8.615850e-47 |
| Msa0136100 | Msa0506670 | 0.806498 | 7.990664e-50 | -8.615850e-47 |
| Msa0140500 | Msa0506670 | -0.808944 | 2.414253e-50 | -8.615850e-47 |
| Msa0167820 | Msa0506670 | 0.817169 | 3.791726e-52 | -8.615850e-47 |
| Msa0171280 | Msa0506670 | 0.811297 | 7.510564e-51 | -8.615850e-47 |
| Msa0171540 | Msa0506670 | 0.802345 | 5.863797e-49 | -8.615850e-47 |
| Msa0172070 | Msa0506670 | 0.804993 | 1.654065e-49 | -8.615850e-47 |
| Msa0188150 | Msa0506670 | 0.807791 | 4.253808e-50 | -8.615850e-47 |
| Msa0197660 | Msa0506670 | 0.820811 | 5.629959e-53 | -8.615850e-47 |
| Msa0211150 | Msa0506670 | 0.804891 | 1.737317e-49 | -8.615850e-47 |
| Msa0215590 | Msa0506670 | 0.806750 | 7.067706e-50 | -8.615850e-47 |
| Msa0217700 | Msa0506670 | 0.845382 | 4.205278e-59 | -8.615850e-47 |
| Msa0218270 | Msa0506670 | 0.800335 | 1.512619e-48 | -8.615850e-47 |
| Msa0381610 | Msa0506670 | -0.822681 | 2.079632e-53 | -8.615850e-47 |
| Msa0383800 | Msa0506670 | 0.819988 | 8.697313e-53 | -8.615850e-47 |
| Msa0386920 | Msa0506670 | 0.812383 | 4.359414e-51 | -8.615850e-47 |
| Msa0405130 | Msa0506670 | 0.807763 | 4.311341e-50 | -8.615850e-47 |
| Msa0406770 | Msa0506670 | 0.822902 | 1.847858e-53 | -8.615850e-47 |
| Msa0428050 | Msa0506670 | 0.806603 | 7.591756e-50 | -8.615850e-47 |
| Msa0434180 | Msa0506670 | 0.838515 | 2.747388e-57 | -8.615850e-47 |
| Msa0435690 | Msa0506670 | 0.803250 | 3.813350e-49 | -8.615850e-47 |
| Msa0436030 | Msa0506670 | 0.826434 | 2.718680e-54 | -8.615850e-47 |
| Msa0450400 | Msa0506670 | -0.805987 | 1.023673e-49 | -8.615850e-47 |
| Msa0464680 | Msa0506670 | 0.810871 | 9.290745e-51 | -8.615850e-47 |
| Msa0468320 | Msa0506670 | 0.800401 | 1.466252e-48 | -8.615850e-47 |
| Msa0479170 | Msa0506670 | 0.811078 | 8.381339e-51 | -8.615850e-47 |
| Msa0239800 | Msa0506670 | 0.819784 | 9.680888e-53 | -8.615850e-47 |
| Msa0240900 | Msa0506670 | 0.816175 | 6.332735e-52 | -8.615850e-47 |
| Msa0257520 | Msa0506670 | 0.822168 | 2.737144e-53 | -8.615850e-47 |
| Msa0267370 | Msa0506670 | 0.808216 | 3.453299e-50 | -8.615850e-47 |
| Msa0267780 | Msa0506670 | 0.803489 | 3.401387e-49 | -8.615850e-47 |
| Msa0277820 | Msa0506670 | 0.810518 | 1.107857e-50 | -8.615850e-47 |
| Msa0279240 | Msa0506670 | 0.804021 | 2.637880e-49 | -8.615850e-47 |
| Msa0296820 | Msa0506670 | 0.816502 | 5.349783e-52 | -8.615850e-47 |
| Msa0317510 | Msa0506670 | 0.816440 | 5.523973e-52 | -8.615850e-47 |
| Msa0317970 | Msa0506670 | 0.836777 | 7.669472e-57 | -8.615850e-47 |
| Msa0318980 | Msa0506670 | 0.807594 | 4.682886e-50 | -8.615850e-47 |
| Msa0333650 | Msa0506670 | 0.811473 | 6.878670e-51 | -8.615850e-47 |
| Msa0337700 | Msa0506670 | 0.810036 | 1.407412e-50 | -8.615850e-47 |
| Msa0339500 | Msa0506670 | 0.808132 | 3.599148e-50 | -8.615850e-47 |
| Msa0341690 | Msa0506670 | 0.804183 | 2.440664e-49 | -8.615850e-47 |
| Msa0358890 | Msa0506670 | 0.837340 | 5.507427e-57 | -8.615850e-47 |
| Msa0360210 | Msa0506670 | 0.820681 | 6.031570e-53 | -8.615850e-47 |
| Msa0506670 | Msa0510930 | 0.815812 | 7.632171e-52 | -8.615850e-47 |
| Msa0506670 | Msa0521670 | 0.819863 | 9.290933e-53 | -8.615850e-47 |
| Msa0506670 | Msa0529890 | 0.826671 | 2.386751e-54 | -8.615850e-47 |
| Msa0506670 | Msa0532980 | 0.813272 | 2.784165e-51 | -8.615850e-47 |
| Msa0506670 | Msa0532990 | 0.851201 | 1.035780e-60 | -8.615850e-47 |
| Msa0506670 | Msa0572840 | 0.811751 | 5.984672e-51 | -8.615850e-47 |
| Msa0506670 | Msa0585560 | 0.815087 | 1.106565e-51 | -8.615850e-47 |
| Msa0506670 | Msa0610840 | -0.806762 | 7.028842e-50 | -8.615850e-47 |
| Msa0506670 | Msa0615440 | 0.801279 | 9.704442e-49 | -8.615850e-47 |
| Msa0506670 | Msa0620620 | 0.822627 | 2.140844e-53 | -8.615850e-47 |
| Msa0506670 | Msa0625720 | 0.823181 | 1.590251e-53 | -8.615850e-47 |
| Msa0506670 | Msa0658040 | 0.800537 | 1.375607e-48 | -8.615850e-47 |
| Msa0506670 | Msa0661570 | 0.830874 | 2.296610e-55 | -8.615850e-47 |
| Msa0506670 | Msa0661650 | 0.817630 | 2.984521e-52 | -8.615850e-47 |
| Msa0506670 | Msa0663390 | 0.814059 | 1.868238e-51 | -8.615850e-47 |
| Msa0506670 | Msa0677410 | 0.803608 | 3.214440e-49 | -8.615850e-47 |
| Msa0506670 | Msa0698490 | 0.800526 | 1.382945e-48 | -8.615850e-47 |
| Msa0506670 | Msa0707250 | 0.813215 | 2.864718e-51 | -8.615850e-47 |
| Msa0506670 | Msa0711150 | 0.829109 | 6.188112e-55 | -8.615850e-47 |
| Msa0506670 | Msa0789100 | 0.803568 | 3.276533e-49 | -8.615850e-47 |
| Msa0506670 | Msa0826760 | 0.834120 | 3.602178e-56 | -8.615850e-47 |
| Msa0506670 | Msa0830230 | 0.807290 | 5.433503e-50 | -8.615850e-47 |
| Msa0506670 | Msa0835800 | 0.806517 | 7.915327e-50 | -8.615850e-47 |
| Msa0506670 | Msa0871270 | 0.814843 | 1.253348e-51 | -8.615850e-47 |
| Msa0506670 | Msa0897330 | 0.811952 | 5.412613e-51 | -8.615850e-47 |
| Msa0506670 | Msa0938220 | 0.819726 | 9.983843e-53 | -8.615850e-47 |
| Msa0506670 | Msa0974080 | 0.814898 | 1.218553e-51 | -8.615850e-47 |
| Msa0506670 | Msa0994950 | 0.807636 | 4.588688e-50 | -8.615850e-47 |
| Msa0506670 | Msa1002850 | 0.802283 | 6.038763e-49 | -8.615850e-47 |
| Msa0506670 | Msa1004840 | 0.801583 | 8.409821e-49 | -8.615850e-47 |
| Msa0506670 | Msa1040840 | 0.810486 | 1.125581e-50 | -8.615850e-47 |
| Msa0506670 | Msa1048160 | 0.801740 | 7.807128e-49 | -8.615850e-47 |
| Msa0506670 | Msa1048220 | 0.800910 | 1.154587e-48 | -8.615850e-47 |
| Msa0506670 | Msa1075650 | 0.805382 | 1.371155e-49 | -8.615850e-47 |
| Msa0506670 | Msa1076960 | 0.804323 | 2.282604e-49 | -8.615850e-47 |
| Msa0506670 | Msa1080640 | 0.814168 | 1.767050e-51 | -8.615850e-47 |
| Msa0506670 | Msa1088640 | 0.801228 | 9.942347e-49 | -8.615850e-47 |
| Msa0506670 | Msa1089450 | 0.817533 | 3.139825e-52 | -8.615850e-47 |
| Msa0506670 | Msa1095650 | 0.814626 | 1.399961e-51 | -8.615850e-47 |
| Msa0506670 | Msa1101090 | 0.806342 | 8.617556e-50 | -8.615850e-47 |
| Msa0506670 | Msa1104090 | 0.804245 | 2.369152e-49 | -8.615850e-47 |
| Msa0506670 | Msa1106700 | 0.802536 | 5.354994e-49 | -8.615850e-47 |
| Msa0506670 | Msa1111870 | 0.803576 | 3.263531e-49 | -8.615850e-47 |
| Msa0506670 | Msa1113170 | 0.808493 | 3.013911e-50 | -8.615850e-47 |
| Msa0506670 | Msa1135470 | 0.801693 | 7.980935e-49 | -8.615850e-47 |
| Msa0506670 | Msa1145810 | 0.802120 | 6.521466e-49 | -8.615850e-47 |
| Msa0506670 | Msa1162780 | 0.810729 | 9.973406e-51 | -8.615850e-47 |
| Msa0506670 | Msa1173300 | 0.812987 | 3.215399e-51 | -8.615850e-47 |
| Msa0506670 | Msa1206850 | 0.804332 | 2.272807e-49 | -8.615850e-47 |
| Msa0506670 | Msa1208880 | 0.803987 | 2.681485e-49 | -8.615850e-47 |
| Msa0506670 | Msa1218450 | 0.815233 | 1.026960e-51 | -8.615850e-47 |
| Msa0506670 | Msa1219000 | 0.835450 | 1.665992e-56 | -8.615850e-47 |
| Msa0506670 | Msa1239920 | 0.802832 | 4.652318e-49 | -8.615850e-47 |
| Msa0506670 | Msa1243490 | 0.803237 | 3.837191e-49 | -8.615850e-47 |
| Msa0506670 | Msa1245930 | 0.803010 | 4.275565e-49 | -8.615850e-47 |
| Msa0506670 | Msa1275590 | 0.809874 | 1.524877e-50 | -8.615850e-47 |
| Msa0506670 | Msa1297230 | 0.800627 | 1.318647e-48 | -8.615850e-47 |
| Msa0506670 | Msa1307600 | 0.800234 | 1.585922e-48 | -8.615850e-47 |
| Msa0506670 | Msa1308870 | 0.801578 | 8.429848e-49 | -8.615850e-47 |
| Msa0506670 | Msa1332760 | 0.819108 | 1.380718e-52 | -8.615850e-47 |
| Msa0506670 | Msa1344340 | 0.823517 | 1.327070e-53 | -8.615850e-47 |
| Msa0506670 | Msa1358670 | 0.812186 | 4.812810e-51 | -8.615850e-47 |
| Msa0506670 | Msa1365600 | 0.803043 | 4.208511e-49 | -8.615850e-47 |
| Msa0506670 | Msa1368430 | 0.810879 | 9.253005e-51 | -8.615850e-47 |
| Msa0506670 | Msa1373100 | 0.800019 | 1.753896e-48 | -8.615850e-47 |
| Msa0506670 | Msa1382790 | 0.800528 | 1.381311e-48 | -8.615850e-47 |
| Msa0506670 | Msa1384870 | 0.808621 | 2.830937e-50 | -8.615850e-47 |
| Msa0506670 | Msa1391550 | 0.802198 | 6.285678e-49 | -8.615850e-47 |
| Msa0506670 | Msa1393570 | 0.806299 | 8.798488e-50 | -8.615850e-47 |
| Msa0506670 | Msa1400580 | 0.804603 | 1.995757e-49 | -8.615850e-47 |
| Msa0506670 | Msa1418280 | 0.805525 | 1.280107e-49 | -8.615850e-47 |
| Msa0506670 | Msa1422950 | 0.800496 | 1.402286e-48 | -8.615850e-47 |
| Msa0506670 | Msa1423350 | 0.804025 | 2.632895e-49 | -8.615850e-47 |
| Msa0506670 | Msa1425880 | 0.814134 | 1.797859e-51 | -8.615850e-47 |
| Msa0506670 | Msa1440310 | 0.850605 | 1.524376e-60 | -8.615850e-47 |
| Msa0506670 | Msa1445390 | -0.806224 | 9.126979e-50 | -8.615850e-47 |
| Msa0506670 | Msa1447180 | 0.809116 | 2.218753e-50 | -8.615850e-47 |
| Msa0506670 | Msa1449340 | -0.823068 | 1.690103e-53 | -8.615850e-47 |
| Msa0506670 | Msa1454570 | 0.803148 | 4.002594e-49 | -8.615850e-47 |
| Msa0506670 | Msa1458770 | 0.802382 | 5.760017e-49 | -8.615850e-47 |
| Msa0506670 | Msa1464810 | 0.828310 | 9.653987e-55 | -8.615850e-47 |
| Msa0506670 | Msa1466540 | 0.825639 | 4.201011e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506670 | MtrunA17_Chr3g0144101 | 82.938 | 211 | 5 | 1 | 1 | 211 | 1 | 180 | 5.38e-121 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506670 | AT1G42480.1 | 54.315 | 197 | 53 | 5 | 5 | 196 | 1 | 165 | 2.37e-62 | 192 |
| Msa0506670 | AT1G42480.3 | 48.990 | 198 | 62 | 7 | 5 | 196 | 1 | 165 | 6.56e-49 | 158 |
| Msa0506670 | AT1G42480.2 | 48.951 | 143 | 37 | 4 | 5 | 142 | 1 | 112 | 2.53e-31 | 112 |
Find 62 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAAGGCACACTTTC+GGG | 0.186428 | 3_4:-53350420 | None:intergenic |
| TTTGAATCTGGCGTTGATTT+TGG | 0.235779 | 3_4:+53350483 | Msa0506670:five_prime_UTR |
| GCTTTAAATCCCTGGATATT+GGG | 0.262963 | 3_4:+53353493 | Msa0506670:exon |
| AGCTTTAAATCCCTGGATAT+TGG | 0.265830 | 3_4:+53353492 | Msa0506670:exon |
| CTCTGGTGTTTGTTTGAATC+TGG | 0.280494 | 3_4:+53350471 | Msa0506670:five_prime_UTR |
| TATTACCGCAACAGCTTTAC+AGG | 0.286682 | 3_4:-53350619 | None:intergenic |
| AAGTCTGACTTTATCTTGTT+TGG | 0.300895 | 3_4:+53350396 | None:intergenic |
| AAGGAAAGTTAATTGATTAC+AGG | 0.326013 | 3_4:+53350914 | Msa0506670:CDS |
| CATTGGATTTACATTTAATC+AGG | 0.335507 | 3_4:+53350834 | Msa0506670:CDS |
| GGTGGCTGGAAATCTGCCTT+TGG | 0.341948 | 3_4:+53353515 | Msa0506670:three_prime_UTR |
| GAAGGAGTGGATATCAAATA+AGG | 0.348229 | 3_4:-53350432 | None:intergenic |
| GAAGTCACATTCATATTAAC+AGG | 0.355937 | 3_4:-53353725 | None:intergenic |
| CATTACCTCTCTGAATTAAC+AGG | 0.382670 | 3_4:-53353788 | None:intergenic |
| TATCAAATAAGGCACACTTT+CGG | 0.400897 | 3_4:-53350421 | None:intergenic |
| GGCCCTTGGCGTCCAAGCGA+TGG | 0.403071 | 3_4:-53350885 | None:intergenic |
| TTGTACCATTCACGTGAGTC+TGG | 0.406568 | 3_4:-53351239 | None:intergenic |
| TCATTCATTCATTCAACCAT+TGG | 0.408716 | 3_4:+53350817 | Msa0506670:CDS |
| GGAGAAGCCACGCAATCATT+TGG | 0.416159 | 3_4:+53350855 | Msa0506670:CDS |
| AATGGTACAAAGTGGGTAGC+TGG | 0.417636 | 3_4:+53351252 | Msa0506670:CDS |
| AGAATACACCACAAAATTGA+TGG | 0.418721 | 3_4:+53353554 | Msa0506670:three_prime_UTR |
| TTTGGATATGCGCCATCGCT+TGG | 0.421993 | 3_4:+53350873 | Msa0506670:CDS |
| TCCCTGGATATTGGGGTGGC+TGG | 0.434164 | 3_4:+53353501 | Msa0506670:three_prime_UTR |
| CTTTCCTTGACGCTGGCCCT+TGG | 0.438754 | 3_4:-53350899 | None:intergenic |
| CTTTCTTGTCTTAACAACTC+TGG | 0.441541 | 3_4:+53350454 | Msa0506670:five_prime_UTR |
| TTCCAGCCACCCCAATATCC+AGG | 0.442909 | 3_4:-53353503 | None:intergenic |
| CAGCGAAGTAATAGATCAAA+AGG | 0.443214 | 3_4:+53350515 | Msa0506670:five_prime_UTR |
| GTGGCTGGAAATCTGCCTTT+GGG | 0.448695 | 3_4:+53353516 | Msa0506670:three_prime_UTR |
| AAAGAAAGGGTCTGTTAAAG+TGG | 0.463167 | 3_4:+53352365 | Msa0506670:CDS |
| CTGGCTGAGTTGATAAAGAA+AGG | 0.469807 | 3_4:+53352351 | Msa0506670:CDS |
| GATAGAGAGCTTTAAATCCC+TGG | 0.487170 | 3_4:+53353485 | Msa0506670:exon |
| AAAGACATCTCTTCTTATTG+TGG | 0.488099 | 3_4:+53352047 | Msa0506670:CDS |
| GCGCCATCGCTTGGACGCCA+AGG | 0.499179 | 3_4:+53350882 | Msa0506670:CDS |
| TGGCTGAGTTGATAAAGAAA+GGG | 0.524427 | 3_4:+53352352 | Msa0506670:CDS |
| CGGCAGATAAACAAGAAGCT+CGG | 0.525161 | 3_4:+53352015 | Msa0506670:intron |
| GGCAGATAAACAAGAAGCTC+GGG | 0.526546 | 3_4:+53352016 | Msa0506670:intron |
| CTTTAAATCCCTGGATATTG+GGG | 0.526672 | 3_4:+53353494 | Msa0506670:exon |
| TGGTTGAATGAATGAATGAA+TGG | 0.528944 | 3_4:-53350813 | None:intergenic |
| GACGCCAAGGGCCAGCGTCA+AGG | 0.528946 | 3_4:+53350895 | Msa0506670:CDS |
| TAAATCCCTGGATATTGGGG+TGG | 0.542271 | 3_4:+53353497 | Msa0506670:exon |
| TTCTAACTCCAACTACAAAA+CGG | 0.543121 | 3_4:-53353583 | None:intergenic |
| ACATCTCTTCTTATTGTGGA+AGG | 0.544834 | 3_4:+53352051 | Msa0506670:CDS |
| AGTTGTTAAGACAAGAAAGA+AGG | 0.548594 | 3_4:-53350450 | None:intergenic |
| TATTTCCAGACTCACGTGAA+TGG | 0.557714 | 3_4:+53351234 | Msa0506670:CDS |
| CTGATTAAATGTAAATCCAA+TGG | 0.567032 | 3_4:-53350833 | None:intergenic |
| AAGAAAGGGTCTGTTAAAGT+GGG | 0.567167 | 3_4:+53352366 | Msa0506670:CDS |
| CGCCATCGCTTGGACGCCAA+GGG | 0.570318 | 3_4:+53350883 | Msa0506670:CDS |
| ATGGTACAAAGTGGGTAGCT+GGG | 0.571166 | 3_4:+53351253 | Msa0506670:CDS |
| CAATTAACTTTCCTTGACGC+TGG | 0.576455 | 3_4:-53350906 | None:intergenic |
| TTAAGACAAGAAAGAAGGAG+TGG | 0.578074 | 3_4:-53350445 | None:intergenic |
| CGCATATCCAAATGATTGCG+TGG | 0.578635 | 3_4:-53350862 | None:intergenic |
| AGATGCAAGACTACACACTC+AGG | 0.588888 | 3_4:+53351115 | Msa0506670:CDS |
| GGCAGCACATTTGTCATCAA+CGG | 0.594940 | 3_4:-53350598 | None:intergenic |
| GCAAACACTGCGGTCAGACA+AGG | 0.596885 | 3_4:+53352421 | Msa0506670:CDS |
| TGCTGCCTGTAAAGCTGTTG+CGG | 0.598705 | 3_4:+53350614 | Msa0506670:CDS |
| TCCAGCCACCCCAATATCCA+GGG | 0.599207 | 3_4:-53353502 | None:intergenic |
| ACTTGAAGAAACAGAAGATG+AGG | 0.604644 | 3_4:+53352228 | Msa0506670:CDS |
| TGGAGTGCATACTTGTTCTG+AGG | 0.608571 | 3_4:-53351280 | None:intergenic |
| CTCACGTGAATGGTACAAAG+TGG | 0.626266 | 3_4:+53351244 | Msa0506670:CDS |
| TCACGTGAATGGTACAAAGT+GGG | 0.659626 | 3_4:+53351245 | Msa0506670:CDS |
| GATGCAAGACTACACACTCA+GGG | 0.682191 | 3_4:+53351116 | Msa0506670:CDS |
| CAGTGTATCAGATGAGACAG+AGG | 0.704867 | 3_4:+53353454 | Msa0506670:intron |
| CAAGATTTGAGCAAACACTG+CGG | 0.793006 | 3_4:+53352411 | Msa0506670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATAGCATAATATTT+TGG | - | chr3_4:53351362-53351381 | None:intergenic | 10.0% |
| !!! | TAATATTTTCTTAGAATAAA+CGG | - | chr3_4:53351430-53351449 | None:intergenic | 10.0% |
| !!! | TTATTCTAAGAAAATATTAA+TGG | + | chr3_4:53351431-53351450 | Msa0506670:intron | 10.0% |
| !! | CAATAAAAATACTAAATATA+AGG | - | chr3_4:53351683-53351702 | None:intergenic | 10.0% |
| !! | TTAATATCATTATTTATTGA+TGG | + | chr3_4:53352553-53352572 | Msa0506670:intron | 10.0% |
| !! | AATTGTTAAATAATAAATAC+AGG | - | chr3_4:53353377-53353396 | None:intergenic | 10.0% |
| !! | AATATGTAAGAATTAAGATA+AGG | - | chr3_4:53351169-53351188 | None:intergenic | 15.0% |
| !!! | AATATTTTCTTAGAATAAAC+GGG | - | chr3_4:53351429-53351448 | None:intergenic | 15.0% |
| !!! | ATATAGCATAATATTTTCTT+AGG | - | chr3_4:53351488-53351507 | None:intergenic | 15.0% |
| !! | TGATGAGTAAATATTTATAA+AGG | + | chr3_4:53351951-53351970 | Msa0506670:intron | 15.0% |
| !!! | TAACTTTAATATTTTTCAAC+AGG | + | chr3_4:53352098-53352117 | Msa0506670:intron | 15.0% |
| !!! | AACTTTAATATTTTTCAACA+GGG | + | chr3_4:53352099-53352118 | Msa0506670:intron | 15.0% |
| !!! | AAATAAGTATGATTTGGATT+GGG | - | chr3_4:53350665-53350684 | None:intergenic | 20.0% |
| !!! | TAAATAAGTATGATTTGGAT+TGG | - | chr3_4:53350666-53350685 | None:intergenic | 20.0% |
| !! | GAAACTAAATAAGTATGATT+TGG | - | chr3_4:53350671-53350690 | None:intergenic | 20.0% |
| !! | TATTACAAAAACTTATATGC+AGG | + | chr3_4:53351646-53351665 | Msa0506670:intron | 20.0% |
| !! | TTTAATTCTGATGAGTTATT+TGG | + | chr3_4:53351978-53351997 | Msa0506670:intron | 20.0% |
| !! | TTAAAGTTAAAACATAAACC+TGG | - | chr3_4:53352087-53352106 | None:intergenic | 20.0% |
| !!! | ACTTTAATATTTTTCAACAG+GGG | + | chr3_4:53352100-53352119 | Msa0506670:intron | 20.0% |
| !! | TATCAAAAACCATATTTAGA+AGG | + | chr3_4:53353093-53353112 | Msa0506670:intron | 20.0% |
| !!! | ATTTTAGAACCTTCTAAATA+TGG | - | chr3_4:53353105-53353124 | None:intergenic | 20.0% |
| !! | AACAAAAAAAAAATTCTGAC+TGG | - | chr3_4:53353217-53353236 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTTGTTGATAA+AGG | + | chr3_4:53353232-53353251 | Msa0506670:intron | 20.0% |
| !!! | GTTAATTTTTAATTTCCCAA+AGG | - | chr3_4:53353534-53353553 | None:intergenic | 20.0% |
| !!! | TAAGAGACATTTTAATGATA+CGG | + | chr3_4:53353626-53353645 | Msa0506670:three_prime_UTR | 20.0% |
| ! | ATAAAAACATGTGACTTACA+CGG | - | chr3_4:53350762-53350781 | None:intergenic | 25.0% |
| ! | CTGATTAAATGTAAATCCAA+TGG | - | chr3_4:53350836-53350855 | None:intergenic | 25.0% |
| ! | CATTGGATTTACATTTAATC+AGG | + | chr3_4:53350834-53350853 | Msa0506670:CDS | 25.0% |
| ! | AAGGAAAGTTAATTGATTAC+AGG | + | chr3_4:53350914-53350933 | Msa0506670:CDS | 25.0% |
| !! | CAGATACATTTTTCTTTCAT+CGG | - | chr3_4:53350981-53351000 | None:intergenic | 25.0% |
| ! | TAAATCAAAGGTAGATGAAA+TGG | - | chr3_4:53351303-53351322 | None:intergenic | 25.0% |
| ! | TCCAAACATGTTAGAATAAA+CGG | - | chr3_4:53351394-53351413 | None:intergenic | 25.0% |
| ! | TCCAAACATGTTAGAATAAA+CGG | - | chr3_4:53351394-53351413 | None:intergenic | 25.0% |
| ! | TTGTTGTGTCAGAATTAAAT+GGG | + | chr3_4:53351616-53351635 | Msa0506670:intron | 25.0% |
| !! | CTTGCAAAACATGTATATTT+TGG | - | chr3_4:53351713-53351732 | None:intergenic | 25.0% |
| ! | CGTGTATAACTTAAGTATTA+AGG | + | chr3_4:53351809-53351828 | Msa0506670:intron | 25.0% |
| ! | ATTTGGACAAATAATGTTCT+CGG | + | chr3_4:53351995-53352014 | Msa0506670:intron | 25.0% |
| !! | CTTAAACCATACAAACTTTT+GGG | - | chr3_4:53352533-53352552 | None:intergenic | 25.0% |
| !! | ACTTAAACCATACAAACTTT+TGG | - | chr3_4:53352534-53352553 | None:intergenic | 25.0% |
| !!! | TTGTAACATTTTAGAACCTT+AGG | - | chr3_4:53353002-53353021 | None:intergenic | 25.0% |
| ! | ATGTCTATTGTTTGATGTTT+AGG | - | chr3_4:53353335-53353354 | None:intergenic | 25.0% |
| ! | TGTCTCTTAATTGAGAAAAA+TGG | - | chr3_4:53353615-53353634 | None:intergenic | 25.0% |
| TATCAAATAAGGCACACTTT+CGG | - | chr3_4:53350424-53350443 | None:intergenic | 30.0% | |
| AGTTGTTAAGACAAGAAAGA+AGG | - | chr3_4:53350453-53350472 | None:intergenic | 30.0% | |
| TAAAAACATGTGACTTACAC+GGG | - | chr3_4:53350761-53350780 | None:intergenic | 30.0% | |
| TGGTTGAATGAATGAATGAA+TGG | - | chr3_4:53350816-53350835 | None:intergenic | 30.0% | |
| TCATTCATTCATTCAACCAT+TGG | + | chr3_4:53350817-53350836 | Msa0506670:CDS | 30.0% | |
| GAATCTGAGTATGACAATAT+AGG | - | chr3_4:53350946-53350965 | None:intergenic | 30.0% | |
| GAATTAAGATAAGGAACCAA+TGG | - | chr3_4:53351160-53351179 | None:intergenic | 30.0% | |
| !! | TATTCTAGAATGAGCGTTAT+TGG | + | chr3_4:53351185-53351204 | Msa0506670:intron | 30.0% |
| AAATTTCATGAAGTCAAGCA+TGG | - | chr3_4:53351326-53351345 | None:intergenic | 30.0% | |
| CCAAACATGTTAGAATAAAC+GGG | - | chr3_4:53351393-53351412 | None:intergenic | 30.0% | |
| ! | TCTAACATGTTTGGATTTTC+TGG | + | chr3_4:53351399-53351418 | Msa0506670:intron | 30.0% |
| CCAAACATGTTAGAATAAAC+GGG | - | chr3_4:53351393-53351412 | None:intergenic | 30.0% | |
| ! | TCTAACATGTTTGGATTTTC+TGG | + | chr3_4:53351399-53351418 | Msa0506670:intron | 30.0% |
| ! | CTTGTTGTGTCAGAATTAAA+TGG | + | chr3_4:53351615-53351634 | Msa0506670:intron | 30.0% |
| GAAATATGGACTTCAAAATC+AGG | - | chr3_4:53351781-53351800 | None:intergenic | 30.0% | |
| TGAAGTCCATATTTCACATT+TGG | + | chr3_4:53351786-53351805 | Msa0506670:intron | 30.0% | |
| AAAGACATCTCTTCTTATTG+TGG | + | chr3_4:53352047-53352066 | Msa0506670:CDS | 30.0% | |
| ! | TTTTCAACAGGGGATATTTA+TGG | + | chr3_4:53352110-53352129 | Msa0506670:intron | 30.0% |
| ! | TTCTGTTTCTTCAAGTAATC+TGG | - | chr3_4:53352224-53352243 | None:intergenic | 30.0% |
| ! | TTACGATTCACTAGATTTTC+TGG | + | chr3_4:53352474-53352493 | Msa0506670:intron | 30.0% |
| ! | TACGATTCACTAGATTTTCT+GGG | + | chr3_4:53352475-53352494 | Msa0506670:intron | 30.0% |
| TTATTGATGGAGAACATCTT+AGG | + | chr3_4:53352566-53352585 | Msa0506670:intron | 30.0% | |
| ! | TTTCATTCAGTACTAGTTTG+AGG | + | chr3_4:53352589-53352608 | Msa0506670:intron | 30.0% |
| AGAATTCTCTAACATCCATT+TGG | + | chr3_4:53352751-53352770 | Msa0506670:intron | 30.0% | |
| CAATTACCAAATACTCTTCA+CGG | + | chr3_4:53352775-53352794 | Msa0506670:intron | 30.0% | |
| CTTGTGTAAAAAATAGGGTA+AGG | - | chr3_4:53352886-53352905 | None:intergenic | 30.0% | |
| !!! | TACCCTATTTTTTACACAAG+AGG | + | chr3_4:53352886-53352905 | Msa0506670:intron | 30.0% |
| AGCCTCTTGTGTAAAAAATA+GGG | - | chr3_4:53352891-53352910 | None:intergenic | 30.0% | |
| TAGGTAAGATTGAACAAAGA+GGG | - | chr3_4:53352983-53353002 | None:intergenic | 30.0% | |
| TTAGGTAAGATTGAACAAAG+AGG | - | chr3_4:53352984-53353003 | None:intergenic | 30.0% | |
| TCTTTGTTCAATCTTACCTA+AGG | + | chr3_4:53352983-53353002 | Msa0506670:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr3_4:53353085-53353104 | None:intergenic | 30.0% |
| ! | GTTCTCTGTAGTTATCATTT+TGG | - | chr3_4:53353140-53353159 | None:intergenic | 30.0% |
| ACAAGAAAGCAATAAAAGTC+AGG | + | chr3_4:53353256-53353275 | Msa0506670:intron | 30.0% | |
| CTGAATCCTATACAAAGATA+GGG | + | chr3_4:53353285-53353304 | Msa0506670:intron | 30.0% | |
| TGAATCCTATACAAAGATAG+GGG | + | chr3_4:53353286-53353305 | Msa0506670:intron | 30.0% | |
| ! | GTTTGATGTTTAGGTTTGTT+GGG | - | chr3_4:53353326-53353345 | None:intergenic | 30.0% |
| ! | TGTTTGATGTTTAGGTTTGT+TGG | - | chr3_4:53353327-53353346 | None:intergenic | 30.0% |
| AGAATACACCACAAAATTGA+TGG | + | chr3_4:53353554-53353573 | Msa0506670:three_prime_UTR | 30.0% | |
| TTCTAACTCCAACTACAAAA+CGG | - | chr3_4:53353586-53353605 | None:intergenic | 30.0% | |
| GAAGTCACATTCATATTAAC+AGG | - | chr3_4:53353728-53353747 | None:intergenic | 30.0% | |
| ATCAAATAAGGCACACTTTC+GGG | - | chr3_4:53350423-53350442 | None:intergenic | 35.0% | |
| GAAGGAGTGGATATCAAATA+AGG | - | chr3_4:53350435-53350454 | None:intergenic | 35.0% | |
| TTAAGACAAGAAAGAAGGAG+TGG | - | chr3_4:53350448-53350467 | None:intergenic | 35.0% | |
| CTTTCTTGTCTTAACAACTC+TGG | + | chr3_4:53350454-53350473 | Msa0506670:five_prime_UTR | 35.0% | |
| !!! | TTTGAATCTGGCGTTGATTT+TGG | + | chr3_4:53350483-53350502 | Msa0506670:five_prime_UTR | 35.0% |
| ! | CTTTTGATCTATTACTTCGC+TGG | - | chr3_4:53350517-53350536 | None:intergenic | 35.0% |
| CAGCGAAGTAATAGATCAAA+AGG | + | chr3_4:53350515-53350534 | Msa0506670:five_prime_UTR | 35.0% | |
| ! | TAAGTATGATTTGGATTGGG+AGG | - | chr3_4:53350662-53350681 | None:intergenic | 35.0% |
| ! | AGTCTTGCATCTTTTCACAA+AGG | - | chr3_4:53351107-53351126 | None:intergenic | 35.0% |
| CGTGCTTAATTACTTTCCAT+TGG | + | chr3_4:53351141-53351160 | Msa0506670:intron | 35.0% | |
| AGTCAAGCATGGTAAATCAA+AGG | - | chr3_4:53351315-53351334 | None:intergenic | 35.0% | |
| CCCGTTTATTCTAACATGTT+TGG | + | chr3_4:53351390-53351409 | Msa0506670:intron | 35.0% | |
| CCCGTTTATTCTAACATGTT+TGG | + | chr3_4:53351390-53351409 | Msa0506670:intron | 35.0% | |
| TACACGCCAAATGTGAAATA+TGG | - | chr3_4:53351795-53351814 | None:intergenic | 35.0% | |
| TTCATACTCGTTACTCGTTA+AGG | - | chr3_4:53351850-53351869 | None:intergenic | 35.0% | |
| ACAACTTAAACGCTAAACAC+TGG | - | chr3_4:53351905-53351924 | None:intergenic | 35.0% | |
| ACATCTCTTCTTATTGTGGA+AGG | + | chr3_4:53352051-53352070 | Msa0506670:CDS | 35.0% | |
| TTCTTATTGTGGAAGGTAAG+AGG | + | chr3_4:53352058-53352077 | Msa0506670:intron | 35.0% | |
| ! | TTTAAAGTCACTTCTCGCAA+AGG | - | chr3_4:53352156-53352175 | None:intergenic | 35.0% |
| ACTTGAAGAAACAGAAGATG+AGG | + | chr3_4:53352228-53352247 | Msa0506670:CDS | 35.0% | |
| !! | TGGCTGAGTTGATAAAGAAA+GGG | + | chr3_4:53352352-53352371 | Msa0506670:CDS | 35.0% |
| AAAGAAAGGGTCTGTTAAAG+TGG | + | chr3_4:53352365-53352384 | Msa0506670:CDS | 35.0% | |
| AAGAAAGGGTCTGTTAAAGT+GGG | + | chr3_4:53352366-53352385 | Msa0506670:CDS | 35.0% | |
| ! | GTATTTGGTAATTGGCCAAA+TGG | - | chr3_4:53352769-53352788 | None:intergenic | 35.0% |
| !! | CGTGAAGAGTATTTGGTAAT+TGG | - | chr3_4:53352777-53352796 | None:intergenic | 35.0% |
| !! | AACAAACCGTGAAGAGTATT+TGG | - | chr3_4:53352784-53352803 | None:intergenic | 35.0% |
| CAGCCTCTTGTGTAAAAAAT+AGG | - | chr3_4:53352892-53352911 | None:intergenic | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr3_4:53352941-53352960 | None:intergenic | 35.0% | |
| AGGTAAGATTGAACAAAGAG+GGG | - | chr3_4:53352982-53353001 | None:intergenic | 35.0% | |
| !!! | TATTTTAATCTTCCCCCGTA+AGG | - | chr3_4:53353166-53353185 | None:intergenic | 35.0% |
| AAAGCAATAAAAGTCAGGAG+AGG | + | chr3_4:53353261-53353280 | Msa0506670:intron | 35.0% | |
| CCTATCTTTGTATAGGATTC+AGG | - | chr3_4:53353287-53353306 | None:intergenic | 35.0% | |
| CCTGAATCCTATACAAAGAT+AGG | + | chr3_4:53353284-53353303 | Msa0506670:intron | 35.0% | |
| GAATCCTATACAAAGATAGG+GGG | + | chr3_4:53353287-53353306 | Msa0506670:intron | 35.0% | |
| AATCCTATACAAAGATAGGG+GGG | + | chr3_4:53353288-53353307 | Msa0506670:intron | 35.0% | |
| !!! | TGTTTAGGTTTGTTGGGTTT+TGG | - | chr3_4:53353320-53353339 | None:intergenic | 35.0% |
| !! | AGCTTTAAATCCCTGGATAT+TGG | + | chr3_4:53353492-53353511 | Msa0506670:exon | 35.0% |
| ! | GCTTTAAATCCCTGGATATT+GGG | + | chr3_4:53353493-53353512 | Msa0506670:exon | 35.0% |
| CTTTAAATCCCTGGATATTG+GGG | + | chr3_4:53353494-53353513 | Msa0506670:exon | 35.0% | |
| CTCTGGTGTTTGTTTGAATC+TGG | + | chr3_4:53350471-53350490 | Msa0506670:five_prime_UTR | 40.0% | |
| TATTACCGCAACAGCTTTAC+AGG | - | chr3_4:53350622-53350641 | None:intergenic | 40.0% | |
| TGGGAGGAATGAAAATGAAG+AGG | - | chr3_4:53350646-53350665 | None:intergenic | 40.0% | |
| CAATTAACTTTCCTTGACGC+TGG | - | chr3_4:53350909-53350928 | None:intergenic | 40.0% | |
| TATTTCCAGACTCACGTGAA+TGG | + | chr3_4:53351234-53351253 | Msa0506670:CDS | 40.0% | |
| TCACGTGAATGGTACAAAGT+GGG | + | chr3_4:53351245-53351264 | Msa0506670:CDS | 40.0% | |
| GCATTTGCATTGTAAGTGAC+AGG | - | chr3_4:53351759-53351778 | None:intergenic | 40.0% | |
| TCACTTCTCGCAAAGGATAA+TGG | - | chr3_4:53352149-53352168 | None:intergenic | 40.0% | |
| !! | CTGGCTGAGTTGATAAAGAA+AGG | + | chr3_4:53352351-53352370 | Msa0506670:CDS | 40.0% |
| CAAGATTTGAGCAAACACTG+CGG | + | chr3_4:53352411-53352430 | Msa0506670:CDS | 40.0% | |
| TTGTTGTAGTCGTAGCTTTC+AGG | + | chr3_4:53352504-53352523 | Msa0506670:intron | 40.0% | |
| TGTTGTAGTCGTAGCTTTCA+GGG | + | chr3_4:53352505-53352524 | Msa0506670:intron | 40.0% | |
| ! | AGGGTACCCAAAAGTTTGTA+TGG | + | chr3_4:53352524-53352543 | Msa0506670:intron | 40.0% |
| TCATTACTATAAGCCCCATC+AGG | - | chr3_4:53352640-53352659 | None:intergenic | 40.0% | |
| TAGTTGACCTTTGACACATG+TGG | + | chr3_4:53352678-53352697 | Msa0506670:intron | 40.0% | |
| AGTTGACCTTTGACACATGT+GGG | + | chr3_4:53352679-53352698 | Msa0506670:intron | 40.0% | |
| ! | ACGGTTTGTTCAATCTTACC+TGG | + | chr3_4:53352794-53352813 | Msa0506670:intron | 40.0% |
| CGTACAATACACCAAATGGT+GGG | - | chr3_4:53352860-53352879 | None:intergenic | 40.0% | |
| ACTACAGAGAACCTACCTTA+CGG | + | chr3_4:53353148-53353167 | Msa0506670:intron | 40.0% | |
| !! | GATAGAGAGCTTTAAATCCC+TGG | + | chr3_4:53353485-53353504 | Msa0506670:exon | 40.0% |
| ! | GGACAACACCATCAATTTTG+TGG | - | chr3_4:53353565-53353584 | None:intergenic | 40.0% |
| GGCAGCACATTTGTCATCAA+CGG | - | chr3_4:53350601-53350620 | None:intergenic | 45.0% | |
| CCTGCAACACAGCATAGAAT+CGG | - | chr3_4:53350717-53350736 | None:intergenic | 45.0% | |
| CGATTCTATGCTGTGTTGCA+GGG | + | chr3_4:53350715-53350734 | Msa0506670:intron | 45.0% | |
| GATTCTATGCTGTGTTGCAG+GGG | + | chr3_4:53350716-53350735 | Msa0506670:intron | 45.0% | |
| ATTCTATGCTGTGTTGCAGG+GGG | + | chr3_4:53350717-53350736 | Msa0506670:intron | 45.0% | |
| CGCATATCCAAATGATTGCG+TGG | - | chr3_4:53350865-53350884 | None:intergenic | 45.0% | |
| AGATGCAAGACTACACACTC+AGG | + | chr3_4:53351115-53351134 | Msa0506670:CDS | 45.0% | |
| GATGCAAGACTACACACTCA+GGG | + | chr3_4:53351116-53351135 | Msa0506670:CDS | 45.0% | |
| TTGTACCATTCACGTGAGTC+TGG | - | chr3_4:53351242-53351261 | None:intergenic | 45.0% | |
| CTCACGTGAATGGTACAAAG+TGG | + | chr3_4:53351244-53351263 | Msa0506670:CDS | 45.0% | |
| AATGGTACAAAGTGGGTAGC+TGG | + | chr3_4:53351252-53351271 | Msa0506670:CDS | 45.0% | |
| ATGGTACAAAGTGGGTAGCT+GGG | + | chr3_4:53351253-53351272 | Msa0506670:CDS | 45.0% | |
| TGGAGTGCATACTTGTTCTG+AGG | - | chr3_4:53351283-53351302 | None:intergenic | 45.0% | |
| CGGCAGATAAACAAGAAGCT+CGG | + | chr3_4:53352015-53352034 | Msa0506670:intron | 45.0% | |
| GGCAGATAAACAAGAAGCTC+GGG | + | chr3_4:53352016-53352035 | Msa0506670:intron | 45.0% | |
| CACAGATGGTTAGTGCACAA+CGG | - | chr3_4:53352191-53352210 | None:intergenic | 45.0% | |
| ! | TTTGAGGAGCCTTCCTTTTC+TGG | + | chr3_4:53352605-53352624 | Msa0506670:intron | 45.0% |
| AACAACAGGCCAGAAAAGGA+AGG | - | chr3_4:53352617-53352636 | None:intergenic | 45.0% | |
| GTTGACCTTTGACACATGTG+GGG | + | chr3_4:53352680-53352699 | Msa0506670:intron | 45.0% | |
| CTAATCCCCACATGTGTCAA+AGG | - | chr3_4:53352688-53352707 | None:intergenic | 45.0% | |
| CTTTGACACATGTGGGGATT+AGG | + | chr3_4:53352686-53352705 | Msa0506670:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3_4:53352861-53352880 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3_4:53352864-53352883 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3_4:53352897-53352916 | Msa0506670:intron | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr3_4:53352937-53352956 | None:intergenic | 45.0% | |
| TGAACAAAGAGGGGTAACCT+CGG | - | chr3_4:53352973-53352992 | None:intergenic | 45.0% | |
| ! | CAAGTCTTATCCCACTACGT+GGG | + | chr3_4:53353035-53353054 | Msa0506670:intron | 45.0% |
| ! | AAGTCTTATCCCACTACGTG+GGG | + | chr3_4:53353036-53353055 | Msa0506670:intron | 45.0% |
| CTACAGAGAACCTACCTTAC+GGG | + | chr3_4:53353149-53353168 | Msa0506670:intron | 45.0% | |
| TACAGAGAACCTACCTTACG+GGG | + | chr3_4:53353150-53353169 | Msa0506670:intron | 45.0% | |
| TTAATCTTCCCCCGTAAGGT+AGG | - | chr3_4:53353162-53353181 | None:intergenic | 45.0% | |
| AGTCCCCCCTATCTTTGTAT+AGG | - | chr3_4:53353294-53353313 | None:intergenic | 45.0% | |
| ATACAAAGATAGGGGGGACT+AGG | + | chr3_4:53353294-53353313 | Msa0506670:intron | 45.0% | |
| CAGTGTATCAGATGAGACAG+AGG | + | chr3_4:53353454-53353473 | Msa0506670:intron | 45.0% | |
| TAAATCCCTGGATATTGGGG+TGG | + | chr3_4:53353497-53353516 | Msa0506670:exon | 45.0% | |
| !! | GGTGTTGTCCGTTTTGTAGT+TGG | + | chr3_4:53353575-53353594 | Msa0506670:three_prime_UTR | 45.0% |
| TGCTGCCTGTAAAGCTGTTG+CGG | + | chr3_4:53350614-53350633 | Msa0506670:CDS | 50.0% | |
| CCGATTCTATGCTGTGTTGC+AGG | + | chr3_4:53350714-53350733 | Msa0506670:intron | 50.0% | |
| GGAGAAGCCACGCAATCATT+TGG | + | chr3_4:53350855-53350874 | Msa0506670:CDS | 50.0% | |
| TTTGGATATGCGCCATCGCT+TGG | + | chr3_4:53350873-53350892 | Msa0506670:CDS | 50.0% | |
| CTGGTCACAGTACACACAGA+TGG | - | chr3_4:53352205-53352224 | None:intergenic | 50.0% | |
| ACGATGCCATGTCTTGTAGC+TGG | + | chr3_4:53352332-53352351 | Msa0506670:intron | 50.0% | |
| ACTCAGCCAGCTACAAGACA+TGG | - | chr3_4:53352341-53352360 | None:intergenic | 50.0% | |
| CAGGAACAACAGGCCAGAAA+AGG | - | chr3_4:53352621-53352640 | None:intergenic | 50.0% | |
| TTCTGGCCTGTTGTTCCTGA+TGG | + | chr3_4:53352622-53352641 | Msa0506670:intron | 50.0% | |
| TCTGGCCTGTTGTTCCTGAT+GGG | + | chr3_4:53352623-53352642 | Msa0506670:intron | 50.0% | |
| TAAGCCCCATCAGGAACAAC+AGG | - | chr3_4:53352631-53352650 | None:intergenic | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr3_4:53352930-53352949 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | - | chr3_4:53352931-53352950 | None:intergenic | 50.0% | |
| ! | CCACGTAGTGGGATAAGACT+TGG | - | chr3_4:53353037-53353056 | None:intergenic | 50.0% |
| ! | CCAAGTCTTATCCCACTACG+TGG | + | chr3_4:53353034-53353053 | Msa0506670:intron | 50.0% |
| ACAGAGAACCTACCTTACGG+GGG | + | chr3_4:53353151-53353170 | Msa0506670:intron | 50.0% | |
| GTGGCTGGAAATCTGCCTTT+GGG | + | chr3_4:53353516-53353535 | Msa0506670:three_prime_UTR | 50.0% | |
| TTGCAGGGGGAGCTAGAGAT+TGG | + | chr3_4:53350730-53350749 | Msa0506670:intron | 55.0% | |
| GTGGAAGGTAAGAGGCAACC+AGG | + | chr3_4:53352066-53352085 | Msa0506670:intron | 55.0% | |
| GCAAACACTGCGGTCAGACA+AGG | + | chr3_4:53352421-53352440 | Msa0506670:CDS | 55.0% | |
| CTGGCCTGTTGTTCCTGATG+GGG | + | chr3_4:53352624-53352643 | Msa0506670:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr3_4:53352820-53352839 | Msa0506670:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr3_4:53352821-53352840 | Msa0506670:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3_4:53352918-53352937 | None:intergenic | 55.0% | |
| CAACTTTACCAGTTGCGCCG+AGG | + | chr3_4:53352953-53352972 | Msa0506670:intron | 55.0% | |
| CTTATCCCACTACGTGGGGT+CGG | + | chr3_4:53353040-53353059 | Msa0506670:intron | 55.0% | |
| TCCAGCCACCCCAATATCCA+GGG | - | chr3_4:53353505-53353524 | None:intergenic | 55.0% | |
| TTCCAGCCACCCCAATATCC+AGG | - | chr3_4:53353506-53353525 | None:intergenic | 55.0% | |
| GGTGGCTGGAAATCTGCCTT+TGG | + | chr3_4:53353515-53353534 | Msa0506670:three_prime_UTR | 55.0% | |
| CTTTCCTTGACGCTGGCCCT+TGG | - | chr3_4:53350902-53350921 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | - | chr3_4:53352815-53352834 | None:intergenic | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3_4:53352848-53352867 | None:intergenic | 60.0% |
| TGTAGCCGACCCCACGTAGT+GGG | - | chr3_4:53353048-53353067 | None:intergenic | 60.0% | |
| ATGTAGCCGACCCCACGTAG+TGG | - | chr3_4:53353049-53353068 | None:intergenic | 60.0% | |
| ACTACGTGGGGTCGGCTACA+TGG | + | chr3_4:53353048-53353067 | Msa0506670:intron | 60.0% | |
| TCCCTGGATATTGGGGTGGC+TGG | + | chr3_4:53353501-53353520 | Msa0506670:three_prime_UTR | 60.0% | |
| CGCCATCGCTTGGACGCCAA+GGG | + | chr3_4:53350883-53350902 | Msa0506670:CDS | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr3_4:53352832-53352851 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr3_4:53352833-53352852 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr3_4:53352832-53352851 | Msa0506670:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr3_4:53352833-53352852 | Msa0506670:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3_4:53352846-53352865 | Msa0506670:intron | 65.0% | |
| AGGGGTAACCTCGGCGCAAC+TGG | - | chr3_4:53352964-53352983 | None:intergenic | 65.0% | |
| GCGCCATCGCTTGGACGCCA+AGG | + | chr3_4:53350882-53350901 | Msa0506670:CDS | 70.0% | |
| GGCCCTTGGCGTCCAAGCGA+TGG | - | chr3_4:53350888-53350907 | None:intergenic | 70.0% | |
| GACGCCAAGGGCCAGCGTCA+AGG | + | chr3_4:53350895-53350914 | Msa0506670:CDS | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr3_4:53352826-53352845 | Msa0506670:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr3_4:53352827-53352846 | Msa0506670:intron | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr3_4:53352831-53352850 | Msa0506670:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 53350400 | 53353796 | 53350400 | ID=Msa0506670;Name=Msa0506670 |
| chr3_4 | mRNA | 53350400 | 53353796 | 53350400 | ID=Msa0506670-mRNA-1;Parent=Msa0506670;Name=Msa0506670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=140|1|0.87|1|1|1|8|297|211 |
| chr3_4 | exon | 53350400 | 53350635 | 53350400 | ID=Msa0506670-mRNA-1:exon:11780;Parent=Msa0506670-mRNA-1 |
| chr3_4 | exon | 53350736 | 53350935 | 53350736 | ID=Msa0506670-mRNA-1:exon:11781;Parent=Msa0506670-mRNA-1 |
| chr3_4 | exon | 53351068 | 53351137 | 53351068 | ID=Msa0506670-mRNA-1:exon:11782;Parent=Msa0506670-mRNA-1 |
| chr3_4 | exon | 53351233 | 53351290 | 53351233 | ID=Msa0506670-mRNA-1:exon:11783;Parent=Msa0506670-mRNA-1 |
| chr3_4 | exon | 53352021 | 53352072 | 53352021 | ID=Msa0506670-mRNA-1:exon:11784;Parent=Msa0506670-mRNA-1 |
| chr3_4 | exon | 53352225 | 53352249 | 53352225 | ID=Msa0506670-mRNA-1:exon:11785;Parent=Msa0506670-mRNA-1 |
| chr3_4 | exon | 53352351 | 53352442 | 53352351 | ID=Msa0506670-mRNA-1:exon:11786;Parent=Msa0506670-mRNA-1 |
| chr3_4 | exon | 53353457 | 53353796 | 53353457 | ID=Msa0506670-mRNA-1:exon:11787;Parent=Msa0506670-mRNA-1 |
| chr3_4 | five_prime_UTR | 53350400 | 53350539 | 53350400 | ID=Msa0506670-mRNA-1:five_prime_utr;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53350540 | 53350635 | 53350540 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53350736 | 53350935 | 53350736 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53351068 | 53351137 | 53351068 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53351233 | 53351290 | 53351233 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53352021 | 53352072 | 53352021 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53352225 | 53352249 | 53352225 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53352351 | 53352442 | 53352351 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | CDS | 53353457 | 53353499 | 53353457 | ID=Msa0506670-mRNA-1:cds;Parent=Msa0506670-mRNA-1 |
| chr3_4 | three_prime_UTR | 53353500 | 53353796 | 53353500 | ID=Msa0506670-mRNA-1:three_prime_utr;Parent=Msa0506670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
