Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436030 | XP_003603847.1 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 6.46e-126 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436030 | sp|Q5M7D4|CNPY1_XENLA | 30.216 | 139 | 80 | 5 | 25 | 150 | 29 | 163 | 1.24e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436030 | G7J5Y0 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 3.08e-126 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0436030 | Msa0506670 | 0.826434 | 2.718680e-54 | -8.615850e-47 |
| Msa0436030 | Msa0661570 | 0.836503 | 9.006640e-57 | -8.615850e-47 |
| Msa0436030 | Msa0760560 | 0.806289 | 8.841475e-50 | -8.615850e-47 |
| Msa0436030 | Msa0789100 | 0.801743 | 7.795782e-49 | -8.615850e-47 |
| Msa0436030 | Msa1256850 | 0.803684 | 3.100169e-49 | -8.615850e-47 |
| Msa0296820 | Msa0436030 | 0.801605 | 8.321804e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436030 | MtrunA17_Chr3g0144101 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 5.94e-130 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436030 | AT1G42480.1 | 66.265 | 166 | 50 | 4 | 5 | 165 | 1 | 165 | 5.74e-68 | 205 |
| Msa0436030 | AT1G42480.3 | 55.090 | 167 | 67 | 6 | 5 | 165 | 1 | 165 | 2.03e-51 | 163 |
| Msa0436030 | AT1G42480.2 | 61.607 | 112 | 38 | 3 | 5 | 111 | 1 | 112 | 6.40e-37 | 125 |
Find 59 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAAGGCACACTTTC+GGG | 0.186428 | 3_2:-89395657 | None:intergenic |
| TTTGAATCTGGCGTTGATTT+TGG | 0.235779 | 3_2:+89395720 | Msa0436030:five_prime_UTR |
| GCTTTAAATCCCTGGATATT+GGG | 0.262963 | 3_2:+89398685 | Msa0436030:exon |
| AGCTTTAAATCCCTGGATAT+TGG | 0.265830 | 3_2:+89398684 | Msa0436030:exon |
| CTCTGGTGTTTGTTTGAATC+TGG | 0.280494 | 3_2:+89395708 | Msa0436030:five_prime_UTR |
| TATTACCGCAACAGCTTTAC+AGG | 0.286682 | 3_2:-89395856 | None:intergenic |
| AAGTCTGACTTTATCTTGTT+TGG | 0.300895 | 3_2:+89395633 | None:intergenic |
| AAGGAAAGTTAATTGATTAC+AGG | 0.326013 | 3_2:+89396152 | Msa0436030:CDS |
| GGTGGCTGGAAATCTGCCTT+TGG | 0.341948 | 3_2:+89398707 | Msa0436030:three_prime_UTR |
| GAAGGAGTGGATATCAAATA+AGG | 0.348229 | 3_2:-89395669 | None:intergenic |
| GAAGTCACATTCATATTAAC+AGG | 0.355937 | 3_2:-89398917 | None:intergenic |
| CATTACCTCTCTGAATTAAC+AGG | 0.382670 | 3_2:-89398980 | None:intergenic |
| TATCAAATAAGGCACACTTT+CGG | 0.400897 | 3_2:-89395658 | None:intergenic |
| GGCCCTTGGCGTCCAAGCGA+TGG | 0.403071 | 3_2:-89396123 | None:intergenic |
| AATGGTACAAAGTGGGTAGC+TGG | 0.412849 | 3_2:+89396490 | Msa0436030:CDS |
| GGAGAAGCCACGCAATCATT+TGG | 0.416159 | 3_2:+89396093 | Msa0436030:intron |
| AGAATACACCACAAAATTGA+TGG | 0.418721 | 3_2:+89398746 | Msa0436030:three_prime_UTR |
| TTTGGATATGCGCCATCGCT+TGG | 0.421993 | 3_2:+89396111 | Msa0436030:CDS |
| TTGTACCATTCATGTGAGTC+TGG | 0.431250 | 3_2:-89396477 | None:intergenic |
| TCCCTGGATATTGGGGTGGC+TGG | 0.434164 | 3_2:+89398693 | Msa0436030:three_prime_UTR |
| CTTTCCTTGACGCTGGCCCT+TGG | 0.438754 | 3_2:-89396137 | None:intergenic |
| CTTTCTTGTCTTAACAACTC+TGG | 0.441541 | 3_2:+89395691 | Msa0436030:five_prime_UTR |
| TTCCAGCCACCCCAATATCC+AGG | 0.442909 | 3_2:-89398695 | None:intergenic |
| GTGGCTGGAAATCTGCCTTT+GGG | 0.448695 | 3_2:+89398708 | Msa0436030:three_prime_UTR |
| CAGCGAAGTAATAGATCAAA+AGG | 0.449939 | 3_2:+89395752 | Msa0436030:five_prime_UTR |
| AAAGAAAGGGTCTGTTAAAG+TGG | 0.463167 | 3_2:+89397558 | Msa0436030:CDS |
| CTGGCTGAGTTGATAAAGAA+AGG | 0.469807 | 3_2:+89397544 | Msa0436030:CDS |
| GATAGAGAGCTTTAAATCCC+TGG | 0.487170 | 3_2:+89398677 | Msa0436030:exon |
| AAAGACATCTCTTCTTATTG+TGG | 0.488099 | 3_2:+89397240 | Msa0436030:CDS |
| GCGCCATCGCTTGGACGCCA+AGG | 0.499179 | 3_2:+89396120 | Msa0436030:CDS |
| TGTCTCTTTCTCTTACTCAT+CGG | 0.520953 | 3_2:+89395801 | Msa0436030:CDS |
| TGGCTGAGTTGATAAAGAAA+GGG | 0.524427 | 3_2:+89397545 | Msa0436030:CDS |
| CGGCAGATAAACAAGAAGCT+CGG | 0.525161 | 3_2:+89397208 | Msa0436030:intron |
| GGCAGATAAACAAGAAGCTC+GGG | 0.526546 | 3_2:+89397209 | Msa0436030:intron |
| CTTTAAATCCCTGGATATTG+GGG | 0.526672 | 3_2:+89398686 | Msa0436030:exon |
| GACGCCAAGGGCCAGCGTCA+AGG | 0.528946 | 3_2:+89396133 | Msa0436030:CDS |
| TAAATCCCTGGATATTGGGG+TGG | 0.542271 | 3_2:+89398689 | Msa0436030:exon |
| TTCTAACTCCAACTACAAAA+CGG | 0.543121 | 3_2:-89398775 | None:intergenic |
| ACATCTCTTCTTATTGTGGA+AGG | 0.544834 | 3_2:+89397244 | Msa0436030:CDS |
| AGTTGTTAAGACAAGAAAGA+AGG | 0.548594 | 3_2:-89395687 | None:intergenic |
| TATTTCCAGACTCACATGAA+TGG | 0.560820 | 3_2:+89396472 | Msa0436030:CDS |
| AAGAAAGGGTCTGTTAAAGT+GGG | 0.567167 | 3_2:+89397559 | Msa0436030:CDS |
| CGCCATCGCTTGGACGCCAA+GGG | 0.570318 | 3_2:+89396121 | Msa0436030:CDS |
| ATGGTACAAAGTGGGTAGCT+GGG | 0.571166 | 3_2:+89396491 | Msa0436030:CDS |
| CAATTAACTTTCCTTGACGC+TGG | 0.576455 | 3_2:-89396144 | None:intergenic |
| TTAAGACAAGAAAGAAGGAG+TGG | 0.578074 | 3_2:-89395682 | None:intergenic |
| CGCATATCCAAATGATTGCG+TGG | 0.578635 | 3_2:-89396100 | None:intergenic |
| AGATGCAAGACTACACACTC+AGG | 0.588888 | 3_2:+89396353 | Msa0436030:CDS |
| GGCAGCACATTTATCATCAA+CGG | 0.592234 | 3_2:-89395835 | None:intergenic |
| GCAAACACTGCGGTCAGACA+AGG | 0.596885 | 3_2:+89397614 | Msa0436030:CDS |
| TGCTGCCTGTAAAGCTGTTG+CGG | 0.598705 | 3_2:+89395851 | Msa0436030:CDS |
| TCCAGCCACCCCAATATCCA+GGG | 0.599207 | 3_2:-89398694 | None:intergenic |
| ACTTGAAGAAACAGAAGATG+AGG | 0.604644 | 3_2:+89397421 | Msa0436030:CDS |
| TGGAGTGCATACTTGTTCTG+AGG | 0.608571 | 3_2:-89396518 | None:intergenic |
| CTCACATGAATGGTACAAAG+TGG | 0.617930 | 3_2:+89396482 | Msa0436030:CDS |
| TCACATGAATGGTACAAAGT+GGG | 0.648994 | 3_2:+89396483 | Msa0436030:CDS |
| GATGCAAGACTACACACTCA+GGG | 0.682191 | 3_2:+89396354 | Msa0436030:CDS |
| CAGTGTATCAGATGAGACAG+AGG | 0.704867 | 3_2:+89398646 | Msa0436030:intron |
| CAAGATTTGAGCAAACACTG+CGG | 0.793006 | 3_2:+89397604 | Msa0436030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAAATACTAAATATA+AGG | - | chr3_2:89396876-89396895 | None:intergenic | 10.0% |
| !! | TTAATATCATTATTTATTGA+TGG | + | chr3_2:89397746-89397765 | Msa0436030:intron | 10.0% |
| !! | AATTGTTAAATAATAAATAC+AGG | - | chr3_2:89398569-89398588 | None:intergenic | 10.0% |
| !! | AATATGTAAGAATTAAGATA+AGG | - | chr3_2:89396407-89396426 | None:intergenic | 15.0% |
| !! | TGATGAGTAAATATTTATAA+AGG | + | chr3_2:89397144-89397163 | Msa0436030:intron | 15.0% |
| !!! | TAACTTTAATATTTTTCAAC+AGG | + | chr3_2:89397291-89397310 | Msa0436030:intron | 15.0% |
| !!! | AACTTTAATATTTTTCAACA+GGG | + | chr3_2:89397292-89397311 | Msa0436030:intron | 15.0% |
| !!! | AAATAAGTATGATTTGGATT+GGG | - | chr3_2:89395902-89395921 | None:intergenic | 20.0% |
| !!! | TAAATAAGTATGATTTGGAT+TGG | - | chr3_2:89395903-89395922 | None:intergenic | 20.0% |
| !! | GAAACTAAATAAGTATGATT+TGG | - | chr3_2:89395908-89395927 | None:intergenic | 20.0% |
| !!! | TAGATACATTTTTCTTTCAT+CGG | - | chr3_2:89396219-89396238 | None:intergenic | 20.0% |
| !!! | TTTAGCATGTTTTTCTTTTA+AGG | - | chr3_2:89396629-89396648 | None:intergenic | 20.0% |
| !! | TATTACAAAAACTTATATGC+AGG | + | chr3_2:89396839-89396858 | Msa0436030:intron | 20.0% |
| !! | TTTAATTCTGATGAGTTATT+TGG | + | chr3_2:89397171-89397190 | Msa0436030:intron | 20.0% |
| !! | TTAAAGTTAAAACATAAACC+TGG | - | chr3_2:89397280-89397299 | None:intergenic | 20.0% |
| !!! | ACTTTAATATTTTTCAACAG+GGG | + | chr3_2:89397293-89397312 | Msa0436030:intron | 20.0% |
| !! | TATCAAAAACCATATTTAGA+AGG | + | chr3_2:89398286-89398305 | Msa0436030:intron | 20.0% |
| !!! | ATTTTAGAACCTTCTAAATA+TGG | - | chr3_2:89398298-89398317 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAAATTCTGAC+TGG | - | chr3_2:89398410-89398429 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTTTTGTTGATAA+AGG | + | chr3_2:89398424-89398443 | Msa0436030:intron | 20.0% |
| !!! | GTTAATTTTTAATTTCCCAA+AGG | - | chr3_2:89398726-89398745 | None:intergenic | 20.0% |
| !!! | TAAGAGACATTTTAATGATA+CGG | + | chr3_2:89398818-89398837 | Msa0436030:three_prime_UTR | 20.0% |
| ! | ATAAAAACATGTGACTTACA+CGG | - | chr3_2:89396004-89396023 | None:intergenic | 25.0% |
| ! | CTGATTAAATGTAAATCCAA+TGG | - | chr3_2:89396074-89396093 | None:intergenic | 25.0% |
| ! | CATTGGATTTACATTTAATC+AGG | + | chr3_2:89396072-89396091 | Msa0436030:intron | 25.0% |
| ! | AAGGAAAGTTAATTGATTAC+AGG | + | chr3_2:89396152-89396171 | Msa0436030:CDS | 25.0% |
| ! | TAAATCAAAGGTAGATGAAA+TGG | - | chr3_2:89396541-89396560 | None:intergenic | 25.0% |
| !! | AATCGATTAAGTAAGAGTTT+TGG | - | chr3_2:89396600-89396619 | None:intergenic | 25.0% |
| !! | AAAACATGCTAAAGTTTTCA+TGG | + | chr3_2:89396636-89396655 | Msa0436030:intron | 25.0% |
| ! | TCCAAACATGTTAGAATAAA+CGG | - | chr3_2:89396717-89396736 | None:intergenic | 25.0% |
| !! | CTTGCAAAACATGTATATTT+TGG | - | chr3_2:89396906-89396925 | None:intergenic | 25.0% |
| ! | CGTGTATAACTTAAGTATTA+AGG | + | chr3_2:89397002-89397021 | Msa0436030:intron | 25.0% |
| ! | ATTTGGACAAATAATGTTCT+CGG | + | chr3_2:89397188-89397207 | Msa0436030:intron | 25.0% |
| !! | CTTAAACCATACAAACTTTT+GGG | - | chr3_2:89397726-89397745 | None:intergenic | 25.0% |
| !! | ACTTAAACCATACAAACTTT+TGG | - | chr3_2:89397727-89397746 | None:intergenic | 25.0% |
| !!! | TTGTAACATTTTAGAACCTT+AGG | - | chr3_2:89398195-89398214 | None:intergenic | 25.0% |
| ! | ATGTCTATTGTTTGATGTTT+AGG | - | chr3_2:89398527-89398546 | None:intergenic | 25.0% |
| ! | TGTCTCTTAATTGAGAAAAA+TGG | - | chr3_2:89398807-89398826 | None:intergenic | 25.0% |
| TATCAAATAAGGCACACTTT+CGG | - | chr3_2:89395661-89395680 | None:intergenic | 30.0% | |
| AGTTGTTAAGACAAGAAAGA+AGG | - | chr3_2:89395690-89395709 | None:intergenic | 30.0% | |
| TAAAAACATGTGACTTACAC+GGG | - | chr3_2:89396003-89396022 | None:intergenic | 30.0% | |
| GAATCTGAGTATGACAATAT+AGG | - | chr3_2:89396184-89396203 | None:intergenic | 30.0% | |
| GAATTAAGATAAGGAACCAA+TGG | - | chr3_2:89396398-89396417 | None:intergenic | 30.0% | |
| !! | TATTCTAGAATGAGCGTTAT+TGG | + | chr3_2:89396423-89396442 | Msa0436030:intron | 30.0% |
| AAATTTCATGAAGTCAAGCA+TGG | - | chr3_2:89396564-89396583 | None:intergenic | 30.0% | |
| CCAAACATGTTAGAATAAAC+GGG | - | chr3_2:89396716-89396735 | None:intergenic | 30.0% | |
| ! | TCTAACATGTTTGGATTTTC+TGG | + | chr3_2:89396722-89396741 | Msa0436030:intron | 30.0% |
| GAAATATGGACTTCAAAATC+AGG | - | chr3_2:89396974-89396993 | None:intergenic | 30.0% | |
| TGAAGTCCATATTTCACATT+TGG | + | chr3_2:89396979-89396998 | Msa0436030:intron | 30.0% | |
| AAAGACATCTCTTCTTATTG+TGG | + | chr3_2:89397240-89397259 | Msa0436030:CDS | 30.0% | |
| ! | TTTTCAACAGGGGATATTTA+TGG | + | chr3_2:89397303-89397322 | Msa0436030:intron | 30.0% |
| ! | TTCTGTTTCTTCAAGTAATC+TGG | - | chr3_2:89397417-89397436 | None:intergenic | 30.0% |
| ! | TTACGATTCACTAGATTTTC+TGG | + | chr3_2:89397667-89397686 | Msa0436030:intron | 30.0% |
| ! | TACGATTCACTAGATTTTCT+GGG | + | chr3_2:89397668-89397687 | Msa0436030:intron | 30.0% |
| TTATTGATGGAGAACATCTT+AGG | + | chr3_2:89397759-89397778 | Msa0436030:intron | 30.0% | |
| ! | TTTCATTCAGTACTAGTTTG+AGG | + | chr3_2:89397782-89397801 | Msa0436030:intron | 30.0% |
| AGAATTCTCTAACATCCATT+TGG | + | chr3_2:89397944-89397963 | Msa0436030:intron | 30.0% | |
| CAATTACCAAATACTCTTCA+CGG | + | chr3_2:89397968-89397987 | Msa0436030:intron | 30.0% | |
| CTTGTGTAAAAAATAGGGTA+AGG | - | chr3_2:89398079-89398098 | None:intergenic | 30.0% | |
| !!! | TACCCTATTTTTTACACAAG+AGG | + | chr3_2:89398079-89398098 | Msa0436030:intron | 30.0% |
| AGCCTCTTGTGTAAAAAATA+GGG | - | chr3_2:89398084-89398103 | None:intergenic | 30.0% | |
| TAGGTAAGATTGAACAAAGA+GGG | - | chr3_2:89398176-89398195 | None:intergenic | 30.0% | |
| TTAGGTAAGATTGAACAAAG+AGG | - | chr3_2:89398177-89398196 | None:intergenic | 30.0% | |
| TCTTTGTTCAATCTTACCTA+AGG | + | chr3_2:89398176-89398195 | Msa0436030:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr3_2:89398278-89398297 | None:intergenic | 30.0% |
| ! | GTTCTCTGTAGTTATCATTT+TGG | - | chr3_2:89398333-89398352 | None:intergenic | 30.0% |
| ACAAGAAAGCAATAAAAGTC+AGG | + | chr3_2:89398448-89398467 | Msa0436030:intron | 30.0% | |
| CTGAATCCTATACAAAGATA+GGG | + | chr3_2:89398477-89398496 | Msa0436030:intron | 30.0% | |
| TGAATCCTATACAAAGATAG+GGG | + | chr3_2:89398478-89398497 | Msa0436030:intron | 30.0% | |
| ! | GTTTGATGTTTAGGTTTGTT+GGG | - | chr3_2:89398518-89398537 | None:intergenic | 30.0% |
| ! | TGTTTGATGTTTAGGTTTGT+TGG | - | chr3_2:89398519-89398538 | None:intergenic | 30.0% |
| AGAATACACCACAAAATTGA+TGG | + | chr3_2:89398746-89398765 | Msa0436030:three_prime_UTR | 30.0% | |
| TTCTAACTCCAACTACAAAA+CGG | - | chr3_2:89398778-89398797 | None:intergenic | 30.0% | |
| GAAGTCACATTCATATTAAC+AGG | - | chr3_2:89398920-89398939 | None:intergenic | 30.0% | |
| ATCAAATAAGGCACACTTTC+GGG | - | chr3_2:89395660-89395679 | None:intergenic | 35.0% | |
| GAAGGAGTGGATATCAAATA+AGG | - | chr3_2:89395672-89395691 | None:intergenic | 35.0% | |
| TTAAGACAAGAAAGAAGGAG+TGG | - | chr3_2:89395685-89395704 | None:intergenic | 35.0% | |
| CTTTCTTGTCTTAACAACTC+TGG | + | chr3_2:89395691-89395710 | Msa0436030:five_prime_UTR | 35.0% | |
| !!! | TTTGAATCTGGCGTTGATTT+TGG | + | chr3_2:89395720-89395739 | Msa0436030:five_prime_UTR | 35.0% |
| ! | CTTTTGATCTATTACTTCGC+TGG | - | chr3_2:89395754-89395773 | None:intergenic | 35.0% |
| CAGCGAAGTAATAGATCAAA+AGG | + | chr3_2:89395752-89395771 | Msa0436030:five_prime_UTR | 35.0% | |
| TGTCTCTTTCTCTTACTCAT+CGG | + | chr3_2:89395801-89395820 | Msa0436030:CDS | 35.0% | |
| ! | TAAGTATGATTTGGATTGGG+AGG | - | chr3_2:89395899-89395918 | None:intergenic | 35.0% |
| CCAATGGTTGAATGAATGAA+TGG | - | chr3_2:89396058-89396077 | None:intergenic | 35.0% | |
| CCATTCATTCATTCAACCAT+TGG | + | chr3_2:89396055-89396074 | Msa0436030:intron | 35.0% | |
| ! | AGTCTTGCATCTTTTCACAA+AGG | - | chr3_2:89396345-89396364 | None:intergenic | 35.0% |
| CGTGCTTAATTACTTTCCAT+TGG | + | chr3_2:89396379-89396398 | Msa0436030:intron | 35.0% | |
| TATTTCCAGACTCACATGAA+TGG | + | chr3_2:89396472-89396491 | Msa0436030:CDS | 35.0% | |
| TCACATGAATGGTACAAAGT+GGG | + | chr3_2:89396483-89396502 | Msa0436030:CDS | 35.0% | |
| AGTCAAGCATGGTAAATCAA+AGG | - | chr3_2:89396553-89396572 | None:intergenic | 35.0% | |
| ! | GTTTTCATGGAAAAGAACTG+AGG | + | chr3_2:89396649-89396668 | Msa0436030:intron | 35.0% |
| CCCGTTTATTCTAACATGTT+TGG | + | chr3_2:89396713-89396732 | Msa0436030:intron | 35.0% | |
| TACACGCCAAATGTGAAATA+TGG | - | chr3_2:89396988-89397007 | None:intergenic | 35.0% | |
| TTCATACTCGTTACTCGTTA+AGG | - | chr3_2:89397043-89397062 | None:intergenic | 35.0% | |
| ACAACTTAAACGCTAAACAC+TGG | - | chr3_2:89397098-89397117 | None:intergenic | 35.0% | |
| ACATCTCTTCTTATTGTGGA+AGG | + | chr3_2:89397244-89397263 | Msa0436030:CDS | 35.0% | |
| TTCTTATTGTGGAAGGTAAG+AGG | + | chr3_2:89397251-89397270 | Msa0436030:intron | 35.0% | |
| TCACTTCTCGCAAAAGATAA+TGG | - | chr3_2:89397342-89397361 | None:intergenic | 35.0% | |
| ACTTGAAGAAACAGAAGATG+AGG | + | chr3_2:89397421-89397440 | Msa0436030:CDS | 35.0% | |
| !! | TGGCTGAGTTGATAAAGAAA+GGG | + | chr3_2:89397545-89397564 | Msa0436030:CDS | 35.0% |
| AAAGAAAGGGTCTGTTAAAG+TGG | + | chr3_2:89397558-89397577 | Msa0436030:CDS | 35.0% | |
| AAGAAAGGGTCTGTTAAAGT+GGG | + | chr3_2:89397559-89397578 | Msa0436030:CDS | 35.0% | |
| TAGTTGACCTTTGACATATG+TGG | + | chr3_2:89397871-89397890 | Msa0436030:intron | 35.0% | |
| AGTTGACCTTTGACATATGT+GGG | + | chr3_2:89397872-89397891 | Msa0436030:intron | 35.0% | |
| ! | GTATTTGGTAATTGGCCAAA+TGG | - | chr3_2:89397962-89397981 | None:intergenic | 35.0% |
| !! | CGTGAAGAGTATTTGGTAAT+TGG | - | chr3_2:89397970-89397989 | None:intergenic | 35.0% |
| !! | AACAAACCGTGAAGAGTATT+TGG | - | chr3_2:89397977-89397996 | None:intergenic | 35.0% |
| CAGCCTCTTGTGTAAAAAAT+AGG | - | chr3_2:89398085-89398104 | None:intergenic | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr3_2:89398134-89398153 | None:intergenic | 35.0% | |
| AGGTAAGATTGAACAAAGAG+GGG | - | chr3_2:89398175-89398194 | None:intergenic | 35.0% | |
| !!! | TATTTTAATCTTCCCCCGTA+AGG | - | chr3_2:89398359-89398378 | None:intergenic | 35.0% |
| AAAGCAATAAAAGTCAGGAG+AGG | + | chr3_2:89398453-89398472 | Msa0436030:intron | 35.0% | |
| CCTATCTTTGTATAGGATTC+AGG | - | chr3_2:89398479-89398498 | None:intergenic | 35.0% | |
| CCTGAATCCTATACAAAGAT+AGG | + | chr3_2:89398476-89398495 | Msa0436030:intron | 35.0% | |
| GAATCCTATACAAAGATAGG+GGG | + | chr3_2:89398479-89398498 | Msa0436030:intron | 35.0% | |
| AATCCTATACAAAGATAGGG+GGG | + | chr3_2:89398480-89398499 | Msa0436030:intron | 35.0% | |
| !!! | TGTTTAGGTTTGTTGGGTTT+TGG | - | chr3_2:89398512-89398531 | None:intergenic | 35.0% |
| !! | AGCTTTAAATCCCTGGATAT+TGG | + | chr3_2:89398684-89398703 | Msa0436030:exon | 35.0% |
| ! | GCTTTAAATCCCTGGATATT+GGG | + | chr3_2:89398685-89398704 | Msa0436030:exon | 35.0% |
| CTTTAAATCCCTGGATATTG+GGG | + | chr3_2:89398686-89398705 | Msa0436030:exon | 35.0% | |
| CTCTGGTGTTTGTTTGAATC+TGG | + | chr3_2:89395708-89395727 | Msa0436030:five_prime_UTR | 40.0% | |
| GGCAGCACATTTATCATCAA+CGG | - | chr3_2:89395838-89395857 | None:intergenic | 40.0% | |
| TATTACCGCAACAGCTTTAC+AGG | - | chr3_2:89395859-89395878 | None:intergenic | 40.0% | |
| TGGGAGGAATGAAAATGAAG+AGG | - | chr3_2:89395883-89395902 | None:intergenic | 40.0% | |
| CAATTAACTTTCCTTGACGC+TGG | - | chr3_2:89396147-89396166 | None:intergenic | 40.0% | |
| TTGTACCATTCATGTGAGTC+TGG | - | chr3_2:89396480-89396499 | None:intergenic | 40.0% | |
| CTCACATGAATGGTACAAAG+TGG | + | chr3_2:89396482-89396501 | Msa0436030:CDS | 40.0% | |
| GCATTTGCATTGTAAGTGAC+AGG | - | chr3_2:89396952-89396971 | None:intergenic | 40.0% | |
| !! | CTGGCTGAGTTGATAAAGAA+AGG | + | chr3_2:89397544-89397563 | Msa0436030:CDS | 40.0% |
| CAAGATTTGAGCAAACACTG+CGG | + | chr3_2:89397604-89397623 | Msa0436030:CDS | 40.0% | |
| TTGTTGTAGTCGTAGCTTTC+AGG | + | chr3_2:89397697-89397716 | Msa0436030:intron | 40.0% | |
| TGTTGTAGTCGTAGCTTTCA+GGG | + | chr3_2:89397698-89397717 | Msa0436030:intron | 40.0% | |
| ! | AGGGTACCCAAAAGTTTGTA+TGG | + | chr3_2:89397717-89397736 | Msa0436030:intron | 40.0% |
| TCATTACTATAAGCCCCATC+AGG | - | chr3_2:89397833-89397852 | None:intergenic | 40.0% | |
| GTTGACCTTTGACATATGTG+GGG | + | chr3_2:89397873-89397892 | Msa0436030:intron | 40.0% | |
| CTAATCCCCACATATGTCAA+AGG | - | chr3_2:89397881-89397900 | None:intergenic | 40.0% | |
| CTTTGACATATGTGGGGATT+AGG | + | chr3_2:89397879-89397898 | Msa0436030:intron | 40.0% | |
| ! | ACGGTTTGTTCAATCTTACC+TGG | + | chr3_2:89397987-89398006 | Msa0436030:intron | 40.0% |
| CGTACAATACACCAAATGGT+GGG | - | chr3_2:89398053-89398072 | None:intergenic | 40.0% | |
| ACTACAGAGAACCTACCTTA+CGG | + | chr3_2:89398341-89398360 | Msa0436030:intron | 40.0% | |
| !! | GATAGAGAGCTTTAAATCCC+TGG | + | chr3_2:89398677-89398696 | Msa0436030:exon | 40.0% |
| ! | GGACAACACCATCAATTTTG+TGG | - | chr3_2:89398757-89398776 | None:intergenic | 40.0% |
| CCTGCAACACAGCATAGAAT+CGG | - | chr3_2:89395959-89395978 | None:intergenic | 45.0% | |
| CGATTCTATGCTGTGTTGCA+GGG | + | chr3_2:89395957-89395976 | Msa0436030:intron | 45.0% | |
| GATTCTATGCTGTGTTGCAG+GGG | + | chr3_2:89395958-89395977 | Msa0436030:intron | 45.0% | |
| ATTCTATGCTGTGTTGCAGG+GGG | + | chr3_2:89395959-89395978 | Msa0436030:intron | 45.0% | |
| CGCATATCCAAATGATTGCG+TGG | - | chr3_2:89396103-89396122 | None:intergenic | 45.0% | |
| AGATGCAAGACTACACACTC+AGG | + | chr3_2:89396353-89396372 | Msa0436030:CDS | 45.0% | |
| GATGCAAGACTACACACTCA+GGG | + | chr3_2:89396354-89396373 | Msa0436030:CDS | 45.0% | |
| AATGGTACAAAGTGGGTAGC+TGG | + | chr3_2:89396490-89396509 | Msa0436030:CDS | 45.0% | |
| ATGGTACAAAGTGGGTAGCT+GGG | + | chr3_2:89396491-89396510 | Msa0436030:CDS | 45.0% | |
| TGGAGTGCATACTTGTTCTG+AGG | - | chr3_2:89396521-89396540 | None:intergenic | 45.0% | |
| CGGCAGATAAACAAGAAGCT+CGG | + | chr3_2:89397208-89397227 | Msa0436030:intron | 45.0% | |
| GGCAGATAAACAAGAAGCTC+GGG | + | chr3_2:89397209-89397228 | Msa0436030:intron | 45.0% | |
| CACAGATGGTTAGTGCACAA+CGG | - | chr3_2:89397384-89397403 | None:intergenic | 45.0% | |
| ! | TTTGAGGAGCCTTCCTTTTC+TGG | + | chr3_2:89397798-89397817 | Msa0436030:intron | 45.0% |
| AACAACAGGCCAGAAAAGGA+AGG | - | chr3_2:89397810-89397829 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3_2:89398054-89398073 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3_2:89398057-89398076 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3_2:89398090-89398109 | Msa0436030:intron | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr3_2:89398130-89398149 | None:intergenic | 45.0% | |
| TGAACAAAGAGGGGTAACCT+CGG | - | chr3_2:89398166-89398185 | None:intergenic | 45.0% | |
| ! | CAAGTCTTATCCCACTACGT+GGG | + | chr3_2:89398228-89398247 | Msa0436030:intron | 45.0% |
| ! | AAGTCTTATCCCACTACGTG+GGG | + | chr3_2:89398229-89398248 | Msa0436030:intron | 45.0% |
| CTACAGAGAACCTACCTTAC+GGG | + | chr3_2:89398342-89398361 | Msa0436030:intron | 45.0% | |
| TACAGAGAACCTACCTTACG+GGG | + | chr3_2:89398343-89398362 | Msa0436030:intron | 45.0% | |
| TTAATCTTCCCCCGTAAGGT+AGG | - | chr3_2:89398355-89398374 | None:intergenic | 45.0% | |
| AGTCCCCCCTATCTTTGTAT+AGG | - | chr3_2:89398486-89398505 | None:intergenic | 45.0% | |
| ATACAAAGATAGGGGGGACT+AGG | + | chr3_2:89398486-89398505 | Msa0436030:intron | 45.0% | |
| CAGTGTATCAGATGAGACAG+AGG | + | chr3_2:89398646-89398665 | Msa0436030:intron | 45.0% | |
| TAAATCCCTGGATATTGGGG+TGG | + | chr3_2:89398689-89398708 | Msa0436030:exon | 45.0% | |
| !! | GGTGTTGTCCGTTTTGTAGT+TGG | + | chr3_2:89398767-89398786 | Msa0436030:three_prime_UTR | 45.0% |
| TGCTGCCTGTAAAGCTGTTG+CGG | + | chr3_2:89395851-89395870 | Msa0436030:CDS | 50.0% | |
| CCGATTCTATGCTGTGTTGC+AGG | + | chr3_2:89395956-89395975 | Msa0436030:intron | 50.0% | |
| GGAGAAGCCACGCAATCATT+TGG | + | chr3_2:89396093-89396112 | Msa0436030:intron | 50.0% | |
| TTTGGATATGCGCCATCGCT+TGG | + | chr3_2:89396111-89396130 | Msa0436030:CDS | 50.0% | |
| CTGGTCACAGTACACACAGA+TGG | - | chr3_2:89397398-89397417 | None:intergenic | 50.0% | |
| ACGATGCCATGTCTTGTAGC+TGG | + | chr3_2:89397525-89397544 | Msa0436030:intron | 50.0% | |
| ACTCAGCCAGCTACAAGACA+TGG | - | chr3_2:89397534-89397553 | None:intergenic | 50.0% | |
| CAGGAACAACAGGCCAGAAA+AGG | - | chr3_2:89397814-89397833 | None:intergenic | 50.0% | |
| TTCTGGCCTGTTGTTCCTGA+TGG | + | chr3_2:89397815-89397834 | Msa0436030:intron | 50.0% | |
| TCTGGCCTGTTGTTCCTGAT+GGG | + | chr3_2:89397816-89397835 | Msa0436030:intron | 50.0% | |
| TAAGCCCCATCAGGAACAAC+AGG | - | chr3_2:89397824-89397843 | None:intergenic | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr3_2:89398123-89398142 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | - | chr3_2:89398124-89398143 | None:intergenic | 50.0% | |
| ! | CCACGTAGTGGGATAAGACT+TGG | - | chr3_2:89398230-89398249 | None:intergenic | 50.0% |
| ! | CCAAGTCTTATCCCACTACG+TGG | + | chr3_2:89398227-89398246 | Msa0436030:intron | 50.0% |
| ACAGAGAACCTACCTTACGG+GGG | + | chr3_2:89398344-89398363 | Msa0436030:intron | 50.0% | |
| GTGGCTGGAAATCTGCCTTT+GGG | + | chr3_2:89398708-89398727 | Msa0436030:three_prime_UTR | 50.0% | |
| TTGCAGGGGGAGCTAGAGAT+TGG | + | chr3_2:89395972-89395991 | Msa0436030:intron | 55.0% | |
| GTGGAAGGTAAGAGGCAACC+AGG | + | chr3_2:89397259-89397278 | Msa0436030:intron | 55.0% | |
| GCAAACACTGCGGTCAGACA+AGG | + | chr3_2:89397614-89397633 | Msa0436030:CDS | 55.0% | |
| CTGGCCTGTTGTTCCTGATG+GGG | + | chr3_2:89397817-89397836 | Msa0436030:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr3_2:89398013-89398032 | Msa0436030:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr3_2:89398014-89398033 | Msa0436030:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3_2:89398111-89398130 | None:intergenic | 55.0% | |
| CAACTTTACCAGTTGCGCCG+AGG | + | chr3_2:89398146-89398165 | Msa0436030:intron | 55.0% | |
| CTTATCCCACTACGTGGGGT+CGG | + | chr3_2:89398233-89398252 | Msa0436030:intron | 55.0% | |
| TCCAGCCACCCCAATATCCA+GGG | - | chr3_2:89398697-89398716 | None:intergenic | 55.0% | |
| TTCCAGCCACCCCAATATCC+AGG | - | chr3_2:89398698-89398717 | None:intergenic | 55.0% | |
| GGTGGCTGGAAATCTGCCTT+TGG | + | chr3_2:89398707-89398726 | Msa0436030:three_prime_UTR | 55.0% | |
| CTTTCCTTGACGCTGGCCCT+TGG | - | chr3_2:89396140-89396159 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | - | chr3_2:89398008-89398027 | None:intergenic | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3_2:89398041-89398060 | None:intergenic | 60.0% |
| TGTAGCCGACCCCACGTAGT+GGG | - | chr3_2:89398241-89398260 | None:intergenic | 60.0% | |
| ATGTAGCCGACCCCACGTAG+TGG | - | chr3_2:89398242-89398261 | None:intergenic | 60.0% | |
| ACTACGTGGGGTCGGCTACA+TGG | + | chr3_2:89398241-89398260 | Msa0436030:intron | 60.0% | |
| TCCCTGGATATTGGGGTGGC+TGG | + | chr3_2:89398693-89398712 | Msa0436030:three_prime_UTR | 60.0% | |
| CGCCATCGCTTGGACGCCAA+GGG | + | chr3_2:89396121-89396140 | Msa0436030:CDS | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr3_2:89398025-89398044 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr3_2:89398026-89398045 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr3_2:89398025-89398044 | Msa0436030:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr3_2:89398026-89398045 | Msa0436030:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3_2:89398039-89398058 | Msa0436030:intron | 65.0% | |
| AGGGGTAACCTCGGCGCAAC+TGG | - | chr3_2:89398157-89398176 | None:intergenic | 65.0% | |
| GCGCCATCGCTTGGACGCCA+AGG | + | chr3_2:89396120-89396139 | Msa0436030:CDS | 70.0% | |
| GGCCCTTGGCGTCCAAGCGA+TGG | - | chr3_2:89396126-89396145 | None:intergenic | 70.0% | |
| GACGCCAAGGGCCAGCGTCA+AGG | + | chr3_2:89396133-89396152 | Msa0436030:CDS | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr3_2:89398019-89398038 | Msa0436030:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr3_2:89398020-89398039 | Msa0436030:intron | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr3_2:89398024-89398043 | Msa0436030:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 89395637 | 89398988 | 89395637 | ID=Msa0436030;Name=Msa0436030 |
| chr3_2 | mRNA | 89395637 | 89398988 | 89395637 | ID=Msa0436030-mRNA-1;Parent=Msa0436030;Name=Msa0436030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=140|1|1|1|1|1|9|297|180 |
| chr3_2 | exon | 89395637 | 89395872 | 89395637 | ID=Msa0436030-mRNA-1:exon:26518;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89395978 | 89396004 | 89395978 | ID=Msa0436030-mRNA-1:exon:26519;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89396094 | 89396173 | 89396094 | ID=Msa0436030-mRNA-1:exon:26520;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89396306 | 89396375 | 89396306 | ID=Msa0436030-mRNA-1:exon:26521;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89396471 | 89396528 | 89396471 | ID=Msa0436030-mRNA-1:exon:26522;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89397214 | 89397265 | 89397214 | ID=Msa0436030-mRNA-1:exon:26523;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89397418 | 89397442 | 89397418 | ID=Msa0436030-mRNA-1:exon:26524;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89397544 | 89397635 | 89397544 | ID=Msa0436030-mRNA-1:exon:26525;Parent=Msa0436030-mRNA-1 |
| chr3_2 | exon | 89398649 | 89398988 | 89398649 | ID=Msa0436030-mRNA-1:exon:26526;Parent=Msa0436030-mRNA-1 |
| chr3_2 | five_prime_UTR | 89395637 | 89395776 | 89395637 | ID=Msa0436030-mRNA-1:five_prime_utr;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89395777 | 89395872 | 89395777 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89395978 | 89396004 | 89395978 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89396094 | 89396173 | 89396094 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89396306 | 89396375 | 89396306 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89396471 | 89396528 | 89396471 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89397214 | 89397265 | 89397214 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89397418 | 89397442 | 89397418 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89397544 | 89397635 | 89397544 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | CDS | 89398649 | 89398691 | 89398649 | ID=Msa0436030-mRNA-1:cds;Parent=Msa0436030-mRNA-1 |
| chr3_2 | three_prime_UTR | 89398692 | 89398988 | 89398692 | ID=Msa0436030-mRNA-1:three_prime_utr;Parent=Msa0436030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
