Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663830 | Msa0697390 | 0.813851 | 2.075741e-51 | -8.615850e-47 |
| Msa0663830 | Msa0905040 | 0.810139 | 1.337142e-50 | -8.615850e-47 |
| Msa0285670 | Msa0663830 | 0.811652 | 6.290588e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACAACTAAAACTGATTT+TGG | 0.114954 | 4_4:+2744549 | None:intergenic |
| ACCATTATCTACACATTTAA+TGG | 0.120110 | 4_4:-2744638 | Msa0663830:five_prime_UTR |
| AGAAGAATTCACCAAATTTA+AGG | 0.151774 | 4_4:+2744214 | None:intergenic |
| TTTACCCTTTACCTTAAATT+TGG | 0.183889 | 4_4:-2744225 | Msa0663830:five_prime_UTR |
| ATCACAACGTTATAAGAATT+TGG | 0.189022 | 4_4:+2744580 | None:intergenic |
| CATTTACAGGTTATTTCTAT+TGG | 0.190801 | 4_4:-2743942 | Msa0663830:intron |
| TTGGCATATAAATTTGAATA+AGG | 0.238429 | 4_4:+2744599 | None:intergenic |
| GTTGTTACACTACTTGATTT+TGG | 0.239010 | 4_4:-2744534 | Msa0663830:five_prime_UTR |
| GCTTCAACCATATCAATTCT+TGG | 0.283308 | 4_4:-2744757 | Msa0663830:intron |
| AAATGCCTATGAATAAAATT+TGG | 0.295175 | 4_4:-2744446 | Msa0663830:five_prime_UTR |
| CAATTTACCAAGAATTGATA+TGG | 0.308678 | 4_4:+2744750 | None:intergenic |
| TTCACCAAATTTAAGGTAAA+GGG | 0.322539 | 4_4:+2744221 | None:intergenic |
| ACATTAACAACACTCTTTCC+AGG | 0.329659 | 4_4:+2744331 | None:intergenic |
| ATTTACAGGTTATTTCTATT+GGG | 0.335592 | 4_4:-2743941 | Msa0663830:intron |
| TGGGGTATGGGTATATTAGT+AGG | 0.355692 | 4_4:-2744514 | Msa0663830:five_prime_UTR |
| ACTGCAAAGAGAGGCTCTTC+TGG | 0.358491 | 4_4:-2744167 | Msa0663830:CDS |
| CCCATTAAATGTGTAGATAA+TGG | 0.365627 | 4_4:+2744637 | None:intergenic |
| CCATTATCTACACATTTAAT+GGG | 0.371507 | 4_4:-2744637 | Msa0663830:five_prime_UTR |
| ACCGGTTTAATTCTAACTTC+TGG | 0.395294 | 4_4:-2744263 | Msa0663830:five_prime_UTR |
| GACATTGTTCACTAACTGTT+AGG | 0.398754 | 4_4:+2741743 | None:intergenic |
| ATTCACCAAATTTAAGGTAA+AGG | 0.399264 | 4_4:+2744220 | None:intergenic |
| TGATTTCACTTCACCTGATC+AGG | 0.402948 | 4_4:+2744137 | None:intergenic |
| GATGTTTGTAATATAGAAAC+CGG | 0.406693 | 4_4:-2744281 | Msa0663830:five_prime_UTR |
| TTAATGTGAAGAATCATATA+AGG | 0.413380 | 4_4:-2744315 | Msa0663830:five_prime_UTR |
| ACCAGAAGTTAGAATTAAAC+CGG | 0.415914 | 4_4:+2744262 | None:intergenic |
| GTGAATTCTTCTGTTTATGA+TGG | 0.418373 | 4_4:-2744203 | Msa0663830:exon |
| GTAGGGCTAAAATTAGTAAT+GGG | 0.437154 | 4_4:-2744496 | Msa0663830:five_prime_UTR |
| ATGGGAATAAAATGCATTGT+AGG | 0.439379 | 4_4:-2744478 | Msa0663830:five_prime_UTR |
| TTCTGGTAGATCTCCTGATC+AGG | 0.450593 | 4_4:-2744150 | Msa0663830:intron |
| AGTAGGGCTAAAATTAGTAA+TGG | 0.482339 | 4_4:-2744497 | Msa0663830:five_prime_UTR |
| GGGGTATGGGTATATTAGTA+GGG | 0.491797 | 4_4:-2744513 | Msa0663830:five_prime_UTR |
| TATGAAAGGATAAAAGATGT+TGG | 0.495579 | 4_4:-2741852 | Msa0663830:three_prime_UTR |
| AAAATTGAATTTGAAGGCGG+TGG | 0.497636 | 4_4:-2743816 | Msa0663830:exon |
| AATGTAATACAGTCATATCA+TGG | 0.506843 | 4_4:+2741810 | None:intergenic |
| GAGATGAAAGTGCAATATGA+TGG | 0.512012 | 4_4:-2741926 | Msa0663830:three_prime_UTR |
| CTATTGGGTCTGCAAAGGTA+TGG | 0.514611 | 4_4:-2743926 | Msa0663830:CDS |
| ATTTCTCCATTCTGATCACC+AGG | 0.516162 | 4_4:+2744909 | None:intergenic |
| TATTGTTGTGGTAGTGAACC+TGG | 0.537540 | 4_4:-2744927 | None:intergenic |
| AGAGGAATTACTGCAAAGAG+AGG | 0.554018 | 4_4:-2744176 | Msa0663830:CDS |
| AAAGTATCTGAAATGATACC+TGG | 0.555557 | 4_4:-2744349 | Msa0663830:five_prime_UTR |
| TTCGATTTGAGCTTTATGAA+AGG | 0.556295 | 4_4:-2741866 | Msa0663830:three_prime_UTR |
| ATACAGTCATATCATGGAGA+TGG | 0.557447 | 4_4:+2741816 | None:intergenic |
| TATTTCTATTGGGTCTGCAA+AGG | 0.563368 | 4_4:-2743931 | Msa0663830:CDS |
| ATGTGGGATATGATGAAAGC+AGG | 0.568912 | 4_4:-2741902 | Msa0663830:three_prime_UTR |
| AAGTGCAATATGATGGGATG+TGG | 0.571713 | 4_4:-2741919 | Msa0663830:three_prime_UTR |
| TAAAAGATGTTGGAATGTAG+TGG | 0.580988 | 4_4:-2741842 | Msa0663830:three_prime_UTR |
| TCATGGCTAGACACTTGTGT+TGG | 0.584548 | 4_4:+2743854 | None:intergenic |
| AGTGCAATATGATGGGATGT+GGG | 0.589936 | 4_4:-2741918 | Msa0663830:three_prime_UTR |
| GGTCTGCAAAGGTATGGAAA+AGG | 0.593712 | 4_4:-2743920 | Msa0663830:intron |
| AGTGAACCTGGTGATCAGAA+TGG | 0.601944 | 4_4:-2744915 | Msa0663830:five_prime_UTR |
| AGATGAAAGTGCAATATGAT+GGG | 0.605901 | 4_4:-2741925 | Msa0663830:three_prime_UTR |
| CAGTCATATCATGGAGATGG+AGG | 0.607315 | 4_4:+2741819 | None:intergenic |
| AACATGTATTGCTCATATCG+TGG | 0.609013 | 4_4:-2744375 | Msa0663830:five_prime_UTR |
| ACTGTTAGGTACATAGAAGT+CGG | 0.614203 | 4_4:+2741757 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATTAAATTTTTTAAGAT+AGG | + | chr4_4:2742871-2742890 | None:intergenic | 10.0% |
| !!! | AAATTCAATTTTTTACTTGT+TGG | + | chr4_4:2742798-2742817 | None:intergenic | 15.0% |
| !! | AAGTAAAAAATTGAATTTGA+AGG | - | chr4_4:2742800-2742819 | Msa0663830:intron | 15.0% |
| !!! | TCACATACTTTTAATATAAA+AGG | + | chr4_4:2743163-2743182 | None:intergenic | 15.0% |
| !!! | AATAGGATTATTTTTACTTT+GGG | - | chr4_4:2743596-2743615 | Msa0663830:intron | 15.0% |
| !!! | TACTAAGTTGATTTTTTATA+TGG | - | chr4_4:2744048-2744067 | Msa0663830:intron | 15.0% |
| !!! | ATTTTTTATATGGAATTACA+TGG | - | chr4_4:2744058-2744077 | Msa0663830:intron | 15.0% |
| !! | AAAACAGCAGTAAAAAAATT+AGG | + | chr4_4:2741779-2741798 | None:intergenic | 20.0% |
| !! | TTGGCATATAAATTTGAATA+AGG | + | chr4_4:2742026-2742045 | None:intergenic | 20.0% |
| !!! | TAACAACTAAAACTGATTTT+GGG | + | chr4_4:2742075-2742094 | None:intergenic | 20.0% |
| !! | AAATGCCTATGAATAAAATT+TGG | - | chr4_4:2742176-2742195 | Msa0663830:intron | 20.0% |
| !!! | AAACACCAAATTTTATTCAT+AGG | + | chr4_4:2742184-2742203 | None:intergenic | 20.0% |
| !! | TTAATGTGAAGAATCATATA+AGG | - | chr4_4:2742307-2742326 | Msa0663830:intron | 20.0% |
| !!! | TAATTATTTAAGTTGTTGAG+CGG | - | chr4_4:2742624-2742643 | Msa0663830:intron | 20.0% |
| !! | TTTGATGAAAATTCATTTAC+AGG | - | chr4_4:2742667-2742686 | Msa0663830:intron | 20.0% |
| !!! | ATTTACAGGTTATTTCTATT+GGG | - | chr4_4:2742681-2742700 | Msa0663830:intron | 20.0% |
| !! | TAAAAAATTGAATTTGAAGG+CGG | - | chr4_4:2742803-2742822 | Msa0663830:intron | 20.0% |
| !!! | TTTAACTTAGTTTTAGGTAA+CGG | - | chr4_4:2743348-2743367 | Msa0663830:intron | 20.0% |
| !! | CAAAGTAAAAATAATCCTAT+TGG | + | chr4_4:2743597-2743616 | None:intergenic | 20.0% |
| !!! | CAATAGGATTATTTTTACTT+TGG | - | chr4_4:2743595-2743614 | Msa0663830:intron | 20.0% |
| !!! | TTTTTACTTTGGGAATTTAT+AGG | - | chr4_4:2743606-2743625 | Msa0663830:intron | 20.0% |
| !! | GACTATATTACTTATGATAT+TGG | - | chr4_4:2743674-2743693 | Msa0663830:intron | 20.0% |
| !!! | TTCTAAAAGATATAGTCAAA+GGG | + | chr4_4:2743729-2743748 | None:intergenic | 20.0% |
| !!! | TTTCTAAAAGATATAGTCAA+AGG | + | chr4_4:2743730-2743749 | None:intergenic | 20.0% |
| !!! | AGAAACATATATTTTGTAAC+CGG | - | chr4_4:2743745-2743764 | Msa0663830:intron | 20.0% |
| !!! | TAAAAAGTTGGTTTACTATT+TGG | - | chr4_4:2743848-2743867 | Msa0663830:CDS | 20.0% |
| !!! | AAAAAGTTGGTTTACTATTT+GGG | - | chr4_4:2743849-2743868 | Msa0663830:CDS | 20.0% |
| !! | GATAGAAAAGAATAAAGTAA+TGG | + | chr4_4:2744506-2744525 | None:intergenic | 20.0% |
| ! | CAATTTACCAAGAATTGATA+TGG | + | chr4_4:2741875-2741894 | None:intergenic | 25.0% |
| ! | ACCATTATCTACACATTTAA+TGG | - | chr4_4:2741984-2742003 | Msa0663830:intron | 25.0% |
| ! | CCATTATCTACACATTTAAT+GGG | - | chr4_4:2741985-2742004 | Msa0663830:intron | 25.0% |
| ! | ATCACAACGTTATAAGAATT+TGG | + | chr4_4:2742045-2742064 | None:intergenic | 25.0% |
| !!! | GTAACAACTAAAACTGATTT+TGG | + | chr4_4:2742076-2742095 | None:intergenic | 25.0% |
| !! | TTGTTACACTACTTGATTTT+GGG | - | chr4_4:2742089-2742108 | Msa0663830:intron | 25.0% |
| ! | GATGTTTGTAATATAGAAAC+CGG | - | chr4_4:2742341-2742360 | Msa0663830:intron | 25.0% |
| ! | TTTACCCTTTACCTTAAATT+TGG | - | chr4_4:2742397-2742416 | Msa0663830:intron | 25.0% |
| !! | TTCACCAAATTTAAGGTAAA+GGG | + | chr4_4:2742404-2742423 | None:intergenic | 25.0% |
| !! | ATTCACCAAATTTAAGGTAA+AGG | + | chr4_4:2742405-2742424 | None:intergenic | 25.0% |
| ! | AGAAGAATTCACCAAATTTA+AGG | + | chr4_4:2742411-2742430 | None:intergenic | 25.0% |
| ! | ATATGTAGTTATTGAGAGTT+AGG | - | chr4_4:2742513-2742532 | Msa0663830:intron | 25.0% |
| !!! | TGGTCTTTTACATTTTGATA+TGG | - | chr4_4:2742554-2742573 | Msa0663830:intron | 25.0% |
| !!! | CATTTACAGGTTATTTCTAT+TGG | - | chr4_4:2742680-2742699 | Msa0663830:intron | 25.0% |
| ! | AGTAAAGTTGTCTTCTATAA+AGG | + | chr4_4:2742899-2742918 | None:intergenic | 25.0% |
| ! | AGAAGACAACTTTACTATTA+TGG | - | chr4_4:2742903-2742922 | Msa0663830:intron | 25.0% |
| ! | ACAACTTTACTATTATGGTA+TGG | - | chr4_4:2742908-2742927 | Msa0663830:intron | 25.0% |
| ! | AATATACATGATAGCATAGT+AGG | + | chr4_4:2742939-2742958 | None:intergenic | 25.0% |
| ! | TCATCTTACTACAATATCAT+TGG | + | chr4_4:2742980-2742999 | None:intergenic | 25.0% |
| ! | CCATAAGTCTAATTTCTTAA+AGG | + | chr4_4:2743196-2743215 | None:intergenic | 25.0% |
| !! | CCTTTAAGAAATTAGACTTA+TGG | - | chr4_4:2743193-2743212 | Msa0663830:intron | 25.0% |
| ! | GAAGAGATTGAAATAATAGA+CGG | - | chr4_4:2743309-2743328 | Msa0663830:intron | 25.0% |
| !!! | TAGTCCTTTAACTTAGTTTT+AGG | - | chr4_4:2743342-2743361 | Msa0663830:intron | 25.0% |
| ! | GTTACCTAAAACTAAGTTAA+AGG | + | chr4_4:2743349-2743368 | None:intergenic | 25.0% |
| ! | ACGATGAAAAAGAACAAATA+CGG | + | chr4_4:2743407-2743426 | None:intergenic | 25.0% |
| ! | CTTTCTATTTATTTGCCAAT+AGG | - | chr4_4:2743579-2743598 | Msa0663830:intron | 25.0% |
| !! | AAAAGTTGGTTTACTATTTG+GGG | - | chr4_4:2743850-2743869 | Msa0663830:CDS | 25.0% |
| !! | TTTTCTTGCAGTAATTATGA+TGG | - | chr4_4:2743925-2743944 | Msa0663830:CDS | 25.0% |
| ! | TTTCTTGCAGTAATTATGAT+GGG | - | chr4_4:2743926-2743945 | Msa0663830:CDS | 25.0% |
| ! | AAATATAACAGAATGCAAGA+GGG | + | chr4_4:2744000-2744019 | None:intergenic | 25.0% |
| ! | AAAATATAACAGAATGCAAG+AGG | + | chr4_4:2744001-2744020 | None:intergenic | 25.0% |
| !! | TCTTGCATTCTGTTATATTT+TGG | - | chr4_4:2744000-2744019 | Msa0663830:intron | 25.0% |
| ! | TAGTAAATGCAAAAGAGATA+AGG | + | chr4_4:2744033-2744052 | None:intergenic | 25.0% |
| ! | AAATTGCATTTACTAAGTGA+TGG | + | chr4_4:2744153-2744172 | None:intergenic | 25.0% |
| ! | ACTTAGTAAATGCAATTTCA+CGG | - | chr4_4:2744155-2744174 | Msa0663830:CDS | 25.0% |
| ! | TCAAAAAAGTTGTTCTTTAC+AGG | + | chr4_4:2744402-2744421 | None:intergenic | 25.0% |
| ! | AAGAATAAAGTAATGGCAAA+GGG | + | chr4_4:2744499-2744518 | None:intergenic | 25.0% |
| ! | AAAGAATAAAGTAATGGCAA+AGG | + | chr4_4:2744500-2744519 | None:intergenic | 25.0% |
| ! | ACATGTGTAATATGAAATGA+AGG | + | chr4_4:2744530-2744549 | None:intergenic | 25.0% |
| !!! | TTTGTGTGTTTTTGTTAAGT+AGG | - | chr4_4:2744623-2744642 | Msa0663830:five_prime_UTR | 25.0% |
| ! | TATGAAAGGATAAAAGATGT+TGG | - | chr4_4:2744770-2744789 | Msa0663830:intron | 25.0% |
| ! | AATGTAATACAGTCATATCA+TGG | + | chr4_4:2744815-2744834 | None:intergenic | 25.0% |
| !!! | AACAATGTCTTTTTTCTTCA+GGG | - | chr4_4:2744893-2744912 | Msa0663830:intron | 25.0% |
| AGCAAGAACACAATATTAGA+AGG | + | chr4_4:2741807-2741826 | None:intergenic | 30.0% | |
| AAAGAATGAAGAATAGCAAG+AGG | + | chr4_4:2741841-2741860 | None:intergenic | 30.0% | |
| CCCATTAAATGTGTAGATAA+TGG | + | chr4_4:2741988-2742007 | None:intergenic | 30.0% | |
| ! | GTTGTTACACTACTTGATTT+TGG | - | chr4_4:2742088-2742107 | Msa0663830:intron | 30.0% |
| ! | TGTTACACTACTTGATTTTG+GGG | - | chr4_4:2742090-2742109 | Msa0663830:intron | 30.0% |
| AGTAGGGCTAAAATTAGTAA+TGG | - | chr4_4:2742125-2742144 | Msa0663830:intron | 30.0% | |
| GTAGGGCTAAAATTAGTAAT+GGG | - | chr4_4:2742126-2742145 | Msa0663830:intron | 30.0% | |
| ATGGGAATAAAATGCATTGT+AGG | - | chr4_4:2742144-2742163 | Msa0663830:intron | 30.0% | |
| ! | TGTTTAGCATCACATGTTTT+TGG | - | chr4_4:2742199-2742218 | Msa0663830:intron | 30.0% |
| ! | AAAGTATCTGAAATGATACC+TGG | - | chr4_4:2742273-2742292 | Msa0663830:intron | 30.0% |
| ACCAGAAGTTAGAATTAAAC+CGG | + | chr4_4:2742363-2742382 | None:intergenic | 30.0% | |
| GTGAATTCTTCTGTTTATGA+TGG | - | chr4_4:2742419-2742438 | Msa0663830:intron | 30.0% | |
| !!! | TCTGTTTATGATGGTTTTAG+AGG | - | chr4_4:2742428-2742447 | Msa0663830:intron | 30.0% |
| ! | CAAGGAATTTTGTGATCATT+AGG | - | chr4_4:2742742-2742761 | Msa0663830:intron | 30.0% |
| GTGTTATCCTTATGCTTAAA+AGG | - | chr4_4:2742840-2742859 | Msa0663830:intron | 30.0% | |
| TTATCCTTATGCTTAAAAGG+TGG | - | chr4_4:2742843-2742862 | Msa0663830:intron | 30.0% | |
| GTTGTCTTCTATAAAGGAAA+AGG | + | chr4_4:2742893-2742912 | None:intergenic | 30.0% | |
| !! | TGACTGAACTTCATTTTAGT+AGG | - | chr4_4:2743051-2743070 | Msa0663830:intron | 30.0% |
| CGGAAAGGACAAAAAAAAAA+AGG | + | chr4_4:2743387-2743406 | None:intergenic | 30.0% | |
| GAAAAAGAACAAATACGGAA+AGG | + | chr4_4:2743402-2743421 | None:intergenic | 30.0% | |
| ! | AAGGGAAACTTAACAGTTTT+AGG | + | chr4_4:2743495-2743514 | None:intergenic | 30.0% |
| AAAAGATATAGTCAAAGGGA+TGG | + | chr4_4:2743725-2743744 | None:intergenic | 30.0% | |
| TGTTCTTCATATTCAATGAC+CGG | + | chr4_4:2743767-2743786 | None:intergenic | 30.0% | |
| ! | TATGAAGAACATTGTTGTTG+TGG | - | chr4_4:2743776-2743795 | Msa0663830:intron | 30.0% |
| ! | ATGAAGAACATTGTTGTTGT+GGG | - | chr4_4:2743777-2743796 | Msa0663830:intron | 30.0% |
| !! | AACTTTTTAATTGTGCCTTC+AGG | + | chr4_4:2743837-2743856 | None:intergenic | 30.0% |
| ! | TGAAGGCACAATTAAAAAGT+TGG | - | chr4_4:2743836-2743855 | Msa0663830:CDS | 30.0% |
| TTATATGGAATTACATGGTC+AGG | - | chr4_4:2744063-2744082 | Msa0663830:intron | 30.0% | |
| TATATGGAATTACATGGTCA+GGG | - | chr4_4:2744064-2744083 | Msa0663830:intron | 30.0% | |
| AAAAGGAGTAAATGTCTTGA+AGG | - | chr4_4:2744102-2744121 | Msa0663830:intron | 30.0% | |
| AGTAAATGTCTTGAAGGTTA+AGG | - | chr4_4:2744108-2744127 | Msa0663830:intron | 30.0% | |
| !!! | ACAACTTTTTTGAACCATCA+AGG | - | chr4_4:2744409-2744428 | Msa0663830:five_prime_UTR | 30.0% |
| AAAGTTATGATAGTCCTTGA+TGG | + | chr4_4:2744426-2744445 | None:intergenic | 30.0% | |
| CTTTCTTTATGTGAGCAATT+TGG | - | chr4_4:2744596-2744615 | Msa0663830:five_prime_UTR | 30.0% | |
| ! | AGATGAAAGTGCAATATGAT+GGG | - | chr4_4:2744697-2744716 | Msa0663830:intron | 30.0% |
| ! | TTCGATTTGAGCTTTATGAA+AGG | - | chr4_4:2744756-2744775 | Msa0663830:intron | 30.0% |
| TAAAAGATGTTGGAATGTAG+TGG | - | chr4_4:2744780-2744799 | Msa0663830:intron | 30.0% | |
| !!! | GAACAATGTCTTTTTTCTTC+AGG | - | chr4_4:2744892-2744911 | Msa0663830:intron | 30.0% |
| GCTTCAACCATATCAATTCT+TGG | - | chr4_4:2741865-2741884 | Msa0663830:three_prime_UTR | 35.0% | |
| !!! | ACTACTTGATTTTGGGGTAT+GGG | - | chr4_4:2742096-2742115 | Msa0663830:intron | 35.0% |
| AACATGTATTGCTCATATCG+TGG | - | chr4_4:2742247-2742266 | Msa0663830:intron | 35.0% | |
| ACATTAACAACACTCTTTCC+AGG | + | chr4_4:2742294-2742313 | None:intergenic | 35.0% | |
| ! | ACCGGTTTAATTCTAACTTC+TGG | - | chr4_4:2742359-2742378 | Msa0663830:intron | 35.0% |
| GAGAGTTAGGTATTTCCTAA+TGG | - | chr4_4:2742526-2742545 | Msa0663830:intron | 35.0% | |
| TAAAAGACCACAACACCATT+AGG | + | chr4_4:2742544-2742563 | None:intergenic | 35.0% | |
| ! | TATTTCTATTGGGTCTGCAA+AGG | - | chr4_4:2742691-2742710 | Msa0663830:intron | 35.0% |
| ! | AAAGGTATGGAAAAGGTGAT+TGG | - | chr4_4:2742709-2742728 | Msa0663830:intron | 35.0% |
| GTGATTGGAGAAACATTTCA+AGG | - | chr4_4:2742724-2742743 | Msa0663830:intron | 35.0% | |
| !! | TTTTACTTGTTGGAGCTTCA+TGG | + | chr4_4:2742788-2742807 | None:intergenic | 35.0% |
| AAAATTGAATTTGAAGGCGG+TGG | - | chr4_4:2742806-2742825 | Msa0663830:intron | 35.0% | |
| GCATAAGGATAACACTTACA+TGG | + | chr4_4:2742835-2742854 | None:intergenic | 35.0% | |
| AACTCAAAATCTCCAGTCTT+AGG | - | chr4_4:2743007-2743026 | Msa0663830:intron | 35.0% | |
| TTCCTTCTCACTGATAGATA+GGG | + | chr4_4:2743224-2743243 | None:intergenic | 35.0% | |
| TTTCCTTCTCACTGATAGAT+AGG | + | chr4_4:2743225-2743244 | None:intergenic | 35.0% | |
| TCTATCAGTGAGAAGGAAAT+AGG | - | chr4_4:2743226-2743245 | Msa0663830:intron | 35.0% | |
| CTATCAGTGAGAAGGAAATA+GGG | - | chr4_4:2743227-2743246 | Msa0663830:intron | 35.0% | |
| GTAAGTGGAAGAAGTTAGAA+GGG | + | chr4_4:2743513-2743532 | None:intergenic | 35.0% | |
| TGTAAGTGGAAGAAGTTAGA+AGG | + | chr4_4:2743514-2743533 | None:intergenic | 35.0% | |
| ACTTCTTCCACTTACATTCT+TGG | - | chr4_4:2743518-2743537 | Msa0663830:intron | 35.0% | |
| GATTCAACCAAGAATGTAAG+TGG | + | chr4_4:2743528-2743547 | None:intergenic | 35.0% | |
| ! | TCCAACACATTTTGCCTAAA+AGG | + | chr4_4:2743646-2743665 | None:intergenic | 35.0% |
| ! | TTTTAGGCAAAATGTGTTGG+AGG | - | chr4_4:2743645-2743664 | Msa0663830:intron | 35.0% |
| ! | ATTTGACATGGACTATACTC+TGG | - | chr4_4:2743800-2743819 | Msa0663830:intron | 35.0% |
| ! | TACTATTTGGGGTATCTTAG+CGG | - | chr4_4:2743861-2743880 | Msa0663830:CDS | 35.0% |
| !! | TGCAGTAATTATGATGGGTT+TGG | - | chr4_4:2743931-2743950 | Msa0663830:CDS | 35.0% |
| TGTACCAAAACATGCATATC+TGG | + | chr4_4:2743965-2743984 | None:intergenic | 35.0% | |
| !! | GGCTTGGTTTTTGACAAAAA+AGG | - | chr4_4:2744085-2744104 | Msa0663830:intron | 35.0% |
| TATGTGAAAGTAGCCTATCA+TGG | - | chr4_4:2744252-2744271 | Msa0663830:five_prime_UTR | 35.0% | |
| CAACTCTCTAAATCCATGAT+AGG | + | chr4_4:2744268-2744287 | None:intergenic | 35.0% | |
| AGAGTTGTCCAAAGAAGATA+AGG | - | chr4_4:2744281-2744300 | Msa0663830:five_prime_UTR | 35.0% | |
| AGGTCAATCCTTATCTTCTT+TGG | + | chr4_4:2744292-2744311 | None:intergenic | 35.0% | |
| ATATCCTCAAGTATTTCCAC+AGG | + | chr4_4:2744312-2744331 | None:intergenic | 35.0% | |
| CTTTATGTGAGCAATTTGGT+TGG | - | chr4_4:2744600-2744619 | Msa0663830:five_prime_UTR | 35.0% | |
| ! | GAGATGAAAGTGCAATATGA+TGG | - | chr4_4:2744696-2744715 | Msa0663830:intron | 35.0% |
| ATACAGTCATATCATGGAGA+TGG | + | chr4_4:2744809-2744828 | None:intergenic | 35.0% | |
| ACTGTTAGGTACATAGAAGT+CGG | + | chr4_4:2744868-2744887 | None:intergenic | 35.0% | |
| GACATTGTTCACTAACTGTT+AGG | + | chr4_4:2744882-2744901 | None:intergenic | 35.0% | |
| !!! | TGTCTTTTTTCTTCAGGGTT+AGG | - | chr4_4:2744898-2744917 | Msa0663830:intron | 35.0% |
| ATTTCTCCATTCTGATCACC+AGG | + | chr4_4:2741716-2741735 | None:intergenic | 40.0% | |
| !!! | CACTACTTGATTTTGGGGTA+TGG | - | chr4_4:2742095-2742114 | Msa0663830:intron | 40.0% |
| TGGGGTATGGGTATATTAGT+AGG | - | chr4_4:2742108-2742127 | Msa0663830:intron | 40.0% | |
| GGGGTATGGGTATATTAGTA+GGG | - | chr4_4:2742109-2742128 | Msa0663830:intron | 40.0% | |
| AGAGGAATTACTGCAAAGAG+AGG | - | chr4_4:2742446-2742465 | Msa0663830:intron | 40.0% | |
| TGATTTCACTTCACCTGATC+AGG | + | chr4_4:2742488-2742507 | None:intergenic | 40.0% | |
| TGATCAGGTGAAGTGAAATC+AGG | - | chr4_4:2742487-2742506 | Msa0663830:intron | 40.0% | |
| ! | GGTATTTCCTAATGGTGTTG+TGG | - | chr4_4:2742534-2742553 | Msa0663830:intron | 40.0% |
| TCAAAATCTCCAGTCTTAGG+AGG | - | chr4_4:2743010-2743029 | Msa0663830:intron | 40.0% | |
| CAAAATCTCCAGTCTTAGGA+GGG | - | chr4_4:2743011-2743030 | Msa0663830:intron | 40.0% | |
| ! | TATTTTGTCCCTCCTAAGAC+TGG | + | chr4_4:2743022-2743041 | None:intergenic | 40.0% |
| !!! | CTTAGTTTTAGGTAACGGCT+TGG | - | chr4_4:2743353-2743372 | Msa0663830:intron | 40.0% |
| ! | CTTTGGGAATTTATAGGCTC+AGG | - | chr4_4:2743612-2743631 | Msa0663830:intron | 40.0% |
| ! | CTCAGGCTTATAAGCCTTTT+AGG | - | chr4_4:2743629-2743648 | Msa0663830:intron | 40.0% |
| ! | GCCTTTTAGGCAAAATGTGT+TGG | - | chr4_4:2743642-2743661 | Msa0663830:intron | 40.0% |
| TGTTGTTGTGGGATTTGACA+TGG | - | chr4_4:2743788-2743807 | Msa0663830:intron | 40.0% | |
| ! | ACTATTTGGGGTATCTTAGC+GGG | - | chr4_4:2743862-2743881 | Msa0663830:intron | 40.0% |
| ! | GTGACCAGATATGCATGTTT+TGG | - | chr4_4:2743958-2743977 | Msa0663830:intron | 40.0% |
| CTGTTTGTCTGTTGAATTGC+TGG | - | chr4_4:2744200-2744219 | Msa0663830:exon | 40.0% | |
| GCTGGCTGTATGTATTTCAA+TGG | - | chr4_4:2744218-2744237 | Msa0663830:five_prime_UTR | 40.0% | |
| ! | AGGCTACTTTCACATACTTG+TGG | + | chr4_4:2744248-2744267 | None:intergenic | 40.0% |
| AGAAGATAAGGATTGACCTG+TGG | - | chr4_4:2744293-2744312 | Msa0663830:five_prime_UTR | 40.0% | |
| TTGACCTGTGGAAATACTTG+AGG | - | chr4_4:2744305-2744324 | Msa0663830:five_prime_UTR | 40.0% | |
| CGAATCAGTAGAGCATATTC+TGG | + | chr4_4:2744350-2744369 | None:intergenic | 40.0% | |
| !! | CGCTCAACTGGTTGATTTTA+AGG | - | chr4_4:2744368-2744387 | Msa0663830:five_prime_UTR | 40.0% |
| ! | AAGTGCAATATGATGGGATG+TGG | - | chr4_4:2744703-2744722 | Msa0663830:intron | 40.0% |
| ! | AGTGCAATATGATGGGATGT+GGG | - | chr4_4:2744704-2744723 | Msa0663830:intron | 40.0% |
| ATGTGGGATATGATGAAAGC+AGG | - | chr4_4:2744720-2744739 | Msa0663830:intron | 40.0% | |
| TTCTGGTAGATCTCCTGATC+AGG | - | chr4_4:2742472-2742491 | Msa0663830:intron | 45.0% | |
| CTATTGGGTCTGCAAAGGTA+TGG | - | chr4_4:2742696-2742715 | Msa0663830:intron | 45.0% | |
| ! | GGTCTGCAAAGGTATGGAAA+AGG | - | chr4_4:2742702-2742721 | Msa0663830:intron | 45.0% |
| TCATGGCTAGACACTTGTGT+TGG | + | chr4_4:2742771-2742790 | None:intergenic | 45.0% | |
| ! | GGAGCCACCTTTTAAGCATA+AGG | + | chr4_4:2742850-2742869 | None:intergenic | 45.0% |
| CTTCTCACTGATAGATAGGG+TGG | + | chr4_4:2743221-2743240 | None:intergenic | 45.0% | |
| CACCCTATCTATCAGTGAGA+AGG | - | chr4_4:2743219-2743238 | Msa0663830:intron | 45.0% | |
| CAAAATGTGTTGGAGGCTCA+TGG | - | chr4_4:2743652-2743671 | Msa0663830:intron | 45.0% | |
| ATTGGCACGAGCTCATGATT+AGG | - | chr4_4:2743692-2743711 | Msa0663830:intron | 45.0% | |
| TTGTGCCTTCAGGCTTGTAT+TGG | + | chr4_4:2743827-2743846 | None:intergenic | 45.0% | |
| ! | CTATTTGGGGTATCTTAGCG+GGG | - | chr4_4:2743863-2743882 | Msa0663830:intron | 45.0% |
| !! | GAAAGCGTTGCAAGACAGAT+AGG | + | chr4_4:2743894-2743913 | None:intergenic | 45.0% |
| AACAGAATGCAAGAGGGAGT+TGG | + | chr4_4:2743994-2744013 | None:intergenic | 45.0% | |
| CAAAGGGATGCTTAGCAGTT+AGG | + | chr4_4:2744483-2744502 | None:intergenic | 45.0% | |
| CAGTCATATCATGGAGATGG+AGG | + | chr4_4:2744806-2744825 | None:intergenic | 45.0% | |
| ACTGCAAAGAGAGGCTCTTC+TGG | - | chr4_4:2742455-2742474 | Msa0663830:intron | 50.0% | |
| CTGGTCCAATACAAGCCTGA+AGG | - | chr4_4:2743819-2743838 | Msa0663830:exon | 50.0% | |
| GGAATTACATGGTCAGGGCT+TGG | - | chr4_4:2744069-2744088 | Msa0663830:intron | 50.0% | |
| !! | GCTCTACTGATTCGCTCAAC+TGG | - | chr4_4:2744356-2744375 | Msa0663830:five_prime_UTR | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2741708 | 2744936 | 2741708 | ID=Msa0663830;Name=Msa0663830 |
| chr4_4 | mRNA | 2741708 | 2744936 | 2741708 | ID=Msa0663830-mRNA-1;Parent=Msa0663830;Name=Msa0663830-mRNA-1;_AED=0.34;_eAED=0.34;_QI=521|0.42|0.5|1|0.14|0.12|8|327|47 |
| chr4_4 | exon | 2741708 | 2741999 | 2741708 | ID=Msa0663830-mRNA-1:exon:813;Parent=Msa0663830-mRNA-1 |
| chr4_4 | exon | 2742554 | 2742559 | 2742554 | ID=Msa0663830-mRNA-1:exon:812;Parent=Msa0663830-mRNA-1 |
| chr4_4 | exon | 2743568 | 2743574 | 2743568 | ID=Msa0663830-mRNA-1:exon:811;Parent=Msa0663830-mRNA-1 |
| chr4_4 | exon | 2743809 | 2743880 | 2743809 | ID=Msa0663830-mRNA-1:exon:810;Parent=Msa0663830-mRNA-1 |
| chr4_4 | exon | 2743921 | 2743955 | 2743921 | ID=Msa0663830-mRNA-1:exon:809;Parent=Msa0663830-mRNA-1 |
| chr4_4 | exon | 2744151 | 2744677 | 2744151 | ID=Msa0663830-mRNA-1:exon:808;Parent=Msa0663830-mRNA-1 |
| chr4_4 | exon | 2744758 | 2744778 | 2744758 | ID=Msa0663830-mRNA-1:exon:807;Parent=Msa0663830-mRNA-1 |
| chr4_4 | exon | 2744905 | 2744936 | 2744905 | ID=Msa0663830-mRNA-1:exon:806;Parent=Msa0663830-mRNA-1 |
| chr4_4 | five_prime_UTR | 2744905 | 2744936 | 2744905 | ID=Msa0663830-mRNA-1:five_prime_utr;Parent=Msa0663830-mRNA-1 |
| chr4_4 | five_prime_UTR | 2744758 | 2744778 | 2744758 | ID=Msa0663830-mRNA-1:five_prime_utr;Parent=Msa0663830-mRNA-1 |
| chr4_4 | five_prime_UTR | 2744210 | 2744677 | 2744210 | ID=Msa0663830-mRNA-1:five_prime_utr;Parent=Msa0663830-mRNA-1 |
| chr4_4 | CDS | 2744151 | 2744209 | 2744151 | ID=Msa0663830-mRNA-1:cds;Parent=Msa0663830-mRNA-1 |
| chr4_4 | CDS | 2743921 | 2743955 | 2743921 | ID=Msa0663830-mRNA-1:cds;Parent=Msa0663830-mRNA-1 |
| chr4_4 | CDS | 2743831 | 2743880 | 2743831 | ID=Msa0663830-mRNA-1:cds;Parent=Msa0663830-mRNA-1 |
| chr4_4 | three_prime_UTR | 2743809 | 2743830 | 2743809 | ID=Msa0663830-mRNA-1:three_prime_utr;Parent=Msa0663830-mRNA-1 |
| chr4_4 | three_prime_UTR | 2743568 | 2743574 | 2743568 | ID=Msa0663830-mRNA-1:three_prime_utr;Parent=Msa0663830-mRNA-1 |
| chr4_4 | three_prime_UTR | 2742554 | 2742559 | 2742554 | ID=Msa0663830-mRNA-1:three_prime_utr;Parent=Msa0663830-mRNA-1 |
| chr4_4 | three_prime_UTR | 2741708 | 2741999 | 2741708 | ID=Msa0663830-mRNA-1:three_prime_utr;Parent=Msa0663830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
