AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905040 MtrunA17_Chr3g0104071 76.636 107 23 1 33 137 82 188 2.18e-52 169
Msa0905040 MtrunA17_Chr5g0429521 74.468 94 23 1 44 137 81 173 1.94e-43 145
Msa0905040 MtrunA17_Chr7g0241761 62.245 98 32 2 43 137 86 181 2.48e-34 122
Msa0905040 MtrunA17_Chr5g0436501 50.000 112 50 2 26 137 61 166 3.90e-29 107
Msa0905040 MtrunA17_Chr1g0162081 60.294 68 27 0 79 146 105 172 1.99e-24 95.9
Msa0905040 MtrunA17_Chr4g0059701 70.909 55 16 0 83 137 71 125 1.41e-23 93.6
Msa0905040 MtrunA17_Chr4g0062741 67.241 58 19 0 89 146 131 188 3.19e-23 92.8
Msa0905040 MtrunA17_Chr5g0415191 78.182 55 10 1 83 137 91 143 4.73e-23 92.4
Msa0905040 MtrunA17_Chr8g0389241 72.000 50 14 0 88 137 97 146 2.33e-21 87.4
Msa0905040 MtrunA17_Chr1g0210471 71.429 49 14 0 89 137 117 165 3.27e-21 86.3
Msa0905040 MtrunA17_Chr2g0331031 74.468 47 12 0 91 137 104 150 9.97e-21 86.7
Msa0905040 MtrunA17_Chr6g0488471 72.917 48 13 0 90 137 91 138 1.52e-20 85.5
Msa0905040 MtrunA17_Chr4g0055931 60.606 66 24 1 72 137 73 136 2.05e-20 85.5
Msa0905040 MtrunA17_Chr5g0440731 36.111 108 68 1 49 155 57 164 6.51e-16 73.2
Msa0905040 MtrunA17_Chr3g0135671 64.444 45 16 0 93 137 88 132 9.40e-16 71.6
Msa0905040 MtrunA17_Chr6g0452791 66.667 42 14 0 96 137 80 121 3.04e-15 69.3
Msa0905040 MtrunA17_Chr3g0092621 64.286 42 15 0 96 137 84 125 1.41e-14 67.4
Msa0905040 MtrunA17_Chr5g0409841 37.168 113 65 3 49 155 39 151 1.86e-14 68.2
Msa0905040 MtrunA17_Chr5g0440741 50.000 58 29 0 98 155 102 159 8.60e-14 67.0
Msa0905040 MtrunA17_Chr5g0409831 52.542 59 19 1 79 137 69 118 1.01e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905040 AT5G58900.1 62.245 98 32 3 44 137 86 182 1.54e-33 120
Msa0905040 AT2G38090.1 52.830 106 32 3 45 137 82 182 5.53e-29 108
Msa0905040 AT3G11280.2 49.123 114 44 3 26 137 67 168 5.62e-27 102
Msa0905040 AT3G11280.1 49.123 114 44 3 26 137 67 168 5.62e-27 102
Msa0905040 AT5G05790.2 51.064 94 42 1 44 137 83 172 2.99e-24 95.5
Msa0905040 AT5G05790.1 51.064 94 42 1 44 137 83 172 2.99e-24 95.5
Msa0905040 AT5G08520.1 50.562 89 34 2 59 137 71 159 4.01e-23 92.8
Msa0905040 AT5G01200.1 49.533 107 39 4 44 137 83 187 6.20e-23 91.7
Msa0905040 AT1G49010.1 67.241 58 19 0 89 146 127 184 8.82e-23 92.4
Msa0905040 AT5G04760.1 77.551 49 11 0 89 137 92 140 1.46e-22 89.7
Msa0905040 AT1G74840.2 80.851 47 9 0 91 137 91 137 2.19e-21 87.0
Msa0905040 AT1G74840.1 80.851 47 9 0 91 137 91 137 3.42e-21 87.0
Msa0905040 AT1G70000.1 70.909 55 14 1 83 137 87 139 6.26e-21 86.3
Msa0905040 AT1G70000.2 70.909 55 14 1 83 137 87 139 6.26e-21 86.3
Msa0905040 AT3G16350.1 59.091 66 27 0 72 137 113 178 8.29e-21 87.8
Msa0905040 AT5G47390.1 59.677 62 25 0 76 137 76 137 1.26e-20 87.0
Msa0905040 AT1G19000.2 73.913 46 12 0 92 137 98 143 4.36e-19 82.0
Msa0905040 AT1G19000.1 73.913 46 12 0 92 137 98 143 4.36e-19 82.0
Msa0905040 AT5G56840.1 60.714 56 20 1 82 137 79 132 8.81e-19 80.1
Msa0905040 AT5G61620.1 45.122 82 41 1 66 147 82 159 2.87e-17 77.4
Msa0905040 AT5G23650.1 64.583 48 17 0 90 137 114 161 2.57e-15 72.0
Msa0905040 AT3G10580.2 58.696 46 19 0 92 137 91 136 3.15e-14 68.2
Msa0905040 AT3G10580.1 58.696 46 19 0 92 137 91 136 3.95e-14 68.6
Msa0905040 AT4G09450.1 52.542 59 28 0 79 137 74 132 4.42e-14 67.0

Find 153 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCATTCTGTTATATTT+TGG 0.133364 6_2:-2913041 Msa0905040:three_prime_UTR
AGAAGAATTCACCAAATTTA+AGG 0.151774 6_2:+2914790 None:intergenic
CATTTACAGGTTATTTCTAT+TGG 0.190801 6_2:-2914385 Msa0905040:intron
TTTACCCTTTACCTTAAATT+TGG 0.205212 6_2:-2914801 Msa0905040:CDS
CCATAAGTCTAATTTCTTAA+AGG 0.208233 6_2:+2913870 None:intergenic
CTGTTTGTCTGTTGAATTGC+TGG 0.217535 6_2:-2912840 Msa0905040:three_prime_UTR
AGAAGACAACTTTACTATTA+TGG 0.222133 6_2:-2914160 Msa0905040:three_prime_UTR
ACTTCTTCCACTTACATTCT+TGG 0.230378 6_2:-2913523 Msa0905040:three_prime_UTR
TCTATCAGTGAGAAGGAAAT+AGG 0.244683 6_2:-2913837 Msa0905040:three_prime_UTR
GACTATATTACTTATGATAT+TGG 0.249139 6_2:-2913367 Msa0905040:three_prime_UTR
CTTTCTTTATGTGAGCAATT+TGG 0.253206 6_2:-2912444 Msa0905040:three_prime_UTR
CCTCCATGGATGTTCTGATT+TGG 0.262980 6_2:-2915969 Msa0905040:five_prime_UTR
AGGTCAATCCTTATCTTCTT+TGG 0.263525 6_2:+2912751 None:intergenic
TAGTTGAATTTGTCAGATAA+TGG 0.279899 6_2:-2915839 Msa0905040:exon
CATTGGTAATAGATAATAAA+TGG 0.280012 6_2:+2914103 None:intergenic
GTTACCTAAAACTAAGTTAA+AGG 0.280475 6_2:+2913696 None:intergenic
CTCCATGGATGTTCTGATTT+GGG 0.293132 6_2:-2915968 Msa0905040:five_prime_UTR
AAATGCCTATGAATAAAATT+TGG 0.295175 6_2:-2915022 Msa0905040:CDS
TTTCCTTCTCACTGATAGAT+AGG 0.306885 6_2:+2913841 None:intergenic
GTGTTGTCCTTATGCTTAAA+AGG 0.318412 6_2:-2914223 Msa0905040:exon
TTCACCAAATTTAAGGTAAA+GGG 0.322539 6_2:+2914797 None:intergenic
AGTAAAGTTGTCTTCTATAA+AGG 0.334990 6_2:+2914167 None:intergenic
TGTAAGTGGAAGAAGTTAGA+AGG 0.335418 6_2:+2913530 None:intergenic
ATTTACAGGTTATTTCTATT+GGG 0.335592 6_2:-2914384 Msa0905040:intron
CAAAGGGATGCTTAGCAGTT+AGG 0.338816 6_2:+2912560 None:intergenic
CCTTTAAGAAATTAGACTTA+TGG 0.350563 6_2:-2913870 Msa0905040:three_prime_UTR
AGTTGAATTTGTCAGATAAT+GGG 0.354445 6_2:-2915838 Msa0905040:exon
TTATATGGAATTACATGGTC+AGG 0.354679 6_2:-2912978 Msa0905040:three_prime_UTR
ACTGCAAAGAGAGGCTCTTC+TGG 0.358491 6_2:-2914743 Msa0905040:CDS
AACTCAAAATCTCCAGTCTT+AGG 0.358494 6_2:-2914056 Msa0905040:three_prime_UTR
CGAATCAGTAGGGCATATTC+TGG 0.361470 6_2:+2912693 None:intergenic
AAAGTTATGATAGTCCTTGA+TGG 0.367359 6_2:+2912617 None:intergenic
TGTACCAAAACATGCATATC+TGG 0.382157 6_2:+2913079 None:intergenic
GCCGGTTTAATTCTAACTTC+TGG 0.383349 6_2:-2914839 Msa0905040:CDS
ATGAAGAACATTGTTGTTGC+GGG 0.388908 6_2:-2913264 Msa0905040:three_prime_UTR
GTGCGTTCCCGATGTTAATA+CGG 0.389051 6_2:-2915877 Msa0905040:five_prime_UTR
CCTCTCTTCCTTTCCTGATC+AGG 0.390701 6_2:+2914713 None:intergenic
TGCAGTAATTATGATGGGTT+TGG 0.390905 6_2:-2913110 Msa0905040:three_prime_UTR
CTTTGGGAATTTATAGGCTC+AGG 0.391484 6_2:-2913429 Msa0905040:three_prime_UTR
GACATTGTTCACTAACTGTT+AGG 0.398754 6_2:+2911966 None:intergenic
ATTCACCAAATTTAAGGTAA+AGG 0.399264 6_2:+2914796 None:intergenic
TTGTGCCTTCAGGCTTGTAT+TGG 0.401702 6_2:+2913217 None:intergenic
TTAAGGATTGTAATCCTGTA+AGG 0.405548 6_2:-2912655 Msa0905040:three_prime_UTR
GCCCTACTGATTCGCTCAAC+TGG 0.407427 6_2:-2912684 Msa0905040:three_prime_UTR
ACCAGAAGTTAGAATTAAAC+CGG 0.417297 6_2:+2914838 None:intergenic
ACTATTTGGGGTATCTTAGC+GGG 0.417455 6_2:-2913179 Msa0905040:three_prime_UTR
GTGAATTCTTCTGTTTATGA+TGG 0.418373 6_2:-2914779 Msa0905040:CDS
GTGACCAGATATGCATGTTT+TGG 0.421812 6_2:-2913083 Msa0905040:three_prime_UTR
GGAATTACATGGTCAGGGCT+TGG 0.425357 6_2:-2912972 Msa0905040:three_prime_UTR
AATATACATGATAGCATAGT+AGG 0.426250 6_2:+2914127 None:intergenic
CAACTCTCTAAATCCATGAT+AGG 0.430467 6_2:+2912775 None:intergenic
CTATCAGTGAGAAGGAAATA+GGG 0.440147 6_2:-2913836 Msa0905040:three_prime_UTR
TACTATTTGGGGTATCTTAG+CGG 0.440195 6_2:-2913180 Msa0905040:three_prime_UTR
TTCAAGAAGACTTTGTTGTA+TGG 0.442264 6_2:-2915907 Msa0905040:five_prime_UTR
AGAGTTGTCCAAAGAAGATA+AGG 0.446445 6_2:-2912759 Msa0905040:three_prime_UTR
ATCTCAGATTGCTCCATCTT+CGG 0.448460 6_2:-2911901 Msa0905040:three_prime_UTR
GTTGTCTTCTATAAAGGAAA+AGG 0.458075 6_2:+2914173 None:intergenic
ATTGGCACGAGCTCATGATT+AGG 0.460377 6_2:-2913349 Msa0905040:three_prime_UTR
ACTTAGTAAATGCAATTTCA+CGG 0.460602 6_2:-2912885 Msa0905040:three_prime_UTR
AGCTGACACATTACCGAAGA+TGG 0.465963 6_2:+2911888 None:intergenic
CAGAACATCCATGGAGGAGT+TGG 0.466922 6_2:+2915975 None:intergenic
AAAAGGAGTAAATGTCTTGA+AGG 0.467418 6_2:-2912938 Msa0905040:three_prime_UTR
GCTGGCTGTATGTATTTCAA+TGG 0.469509 6_2:-2912822 Msa0905040:three_prime_UTR
AGTAAATGTCTTGAAGGTTA+AGG 0.470865 6_2:-2912932 Msa0905040:three_prime_UTR
GCATAAGGACAACACTTACA+TGG 0.473133 6_2:+2914231 None:intergenic
TTTCTTGCAGTAATTATGAT+GGG 0.473271 6_2:-2913115 Msa0905040:three_prime_UTR
TTCTGGTAGATCTCCTGATC+AGG 0.477520 6_2:-2914726 Msa0905040:CDS
TCATCTTACTACAATATCAT+TGG 0.478148 6_2:+2914086 None:intergenic
TATTTCTATTGGGTCTGAAA+AGG 0.478616 6_2:-2914374 Msa0905040:CDS
AAAGGTATGGAAAAGGTGAT+TGG 0.479933 6_2:-2914356 Msa0905040:CDS
GATTCAACCAAGAATGTAAG+TGG 0.487566 6_2:+2913516 None:intergenic
AAGAATAAAGTAATGGCAAA+GGG 0.487601 6_2:+2912544 None:intergenic
GAAAGCGTTGCAAGACAGAT+AGG 0.491188 6_2:+2913150 None:intergenic
CGCTAGATCCAACTCCTCCA+TGG 0.494874 6_2:-2915983 Msa0905040:five_prime_UTR
TATGAAAGGATAAAAGATGT+TGG 0.495579 6_2:-2912075 Msa0905040:three_prime_UTR
CAAAATGTGTTGGAGGCTCA+TGG 0.496406 6_2:-2913389 Msa0905040:three_prime_UTR
AAAATTGAATTTGAAGGCGG+TGG 0.497636 6_2:-2914259 Msa0905040:CDS
CTATTGGGTCTGAAAAGGTA+TGG 0.500766 6_2:-2914369 Msa0905040:CDS
TTCCTTCTCACTGATAGATA+GGG 0.500984 6_2:+2913842 None:intergenic
AATGTAATACAGTCATATCA+TGG 0.506843 6_2:+2912033 None:intergenic
TGTTCTTCATATTCAATGAC+CGG 0.506977 6_2:+2913277 None:intergenic
CTTTATGTGAGCAATTTGGT+TGG 0.509483 6_2:-2912440 Msa0905040:three_prime_UTR
AAAAGTTGGTTTACTATTTG+GGG 0.510466 6_2:-2913191 Msa0905040:three_prime_UTR
GAGATGAAAGTGCAATATGA+TGG 0.512012 6_2:-2912149 Msa0905040:three_prime_UTR
ATTTCTCCATTCTGATCACC+AGG 0.516162 6_2:+2915445 None:intergenic
CTCCTACATGAGGATGTCTC+TGG 0.517014 6_2:+2916016 None:intergenic
TTTCTAAAAGATATAGTCAA+AGG 0.517643 6_2:+2913314 None:intergenic
ACAACTTTACTATTATGGTA+TGG 0.520830 6_2:-2914155 Msa0905040:three_prime_UTR
GTGATTGGAGAAACATTTCA+AGG 0.523020 6_2:-2914341 Msa0905040:CDS
TATGTGAAAGTAGCCTATCA+TGG 0.526059 6_2:-2912788 Msa0905040:three_prime_UTR
TCAAAATCTCCAGTCTTAGG+AGG 0.527252 6_2:-2914053 Msa0905040:three_prime_UTR
AAATTGCATTTACTAAGTGA+TGG 0.529246 6_2:+2912890 None:intergenic
TTCCCAAATCAGAACATCCA+TGG 0.532405 6_2:+2915966 None:intergenic
TTCTAAAAGATATAGTCAAA+GGG 0.534640 6_2:+2913315 None:intergenic
ATGTTAATACGGATTGTGCA+TGG 0.537470 6_2:-2915866 Msa0905040:five_prime_UTR
TATTGTTGTGGTAGTGAACC+TGG 0.537540 6_2:-2915463 Msa0905040:CDS
TATATGGAATTACATGGTCA+GGG 0.546629 6_2:-2912977 Msa0905040:three_prime_UTR
TCACATCTATTCTATTGTTG+TGG 0.548193 6_2:-2915475 Msa0905040:CDS
AAAGAATAAAGTAATGGCAA+AGG 0.548815 6_2:+2912543 None:intergenic
TAGTAAATGCAAAAGAGATA+AGG 0.549691 6_2:+2913011 None:intergenic
GTAAGTGGAAGAAGTTAGAA+GGG 0.552516 6_2:+2913531 None:intergenic
AGAGGAATTACTGCAAAGAG+AGG 0.554018 6_2:-2914752 Msa0905040:CDS
GCACAATCCGTATTAACATC+GGG 0.554917 6_2:+2915870 None:intergenic
TTCGATTTGAGCTTTATGAA+AGG 0.556295 6_2:-2912089 Msa0905040:three_prime_UTR
ATACAGTCATATCATGGAGA+TGG 0.557447 6_2:+2912039 None:intergenic
TCTGATTTGGGAATTTATGT+CGG 0.560351 6_2:-2915956 Msa0905040:five_prime_UTR
CAGAGACATCCTCATGTAGG+AGG 0.560568 6_2:-2916015 Msa0905040:five_prime_UTR
GGTCTGAAAAGGTATGGAAA+AGG 0.561303 6_2:-2914363 Msa0905040:CDS
ATGTGGGATATGATGAAAGC+AGG 0.568912 6_2:-2912125 Msa0905040:three_prime_UTR
TGTTGTTGCGGGATTTGACA+TGG 0.569183 6_2:-2913253 Msa0905040:three_prime_UTR
CTTCTCACTGATAGATAGGG+TGG 0.570585 6_2:+2913845 None:intergenic
AAGTGCAATATGATGGGATG+TGG 0.571713 6_2:-2912142 Msa0905040:three_prime_UTR
AACAGAATGCAAGAGGGAGT+TGG 0.573733 6_2:+2913050 None:intergenic
AAAATATAACAGAATGCAAG+AGG 0.576489 6_2:+2913043 None:intergenic
GATAGAAAAGAATAAAGTAA+TGG 0.577757 6_2:+2912537 None:intergenic
ACCAGTTGAGCGAATCAGTA+GGG 0.578694 6_2:+2912683 None:intergenic
TAAAAGATGTTGGAATGTAG+TGG 0.580988 6_2:-2912065 Msa0905040:three_prime_UTR
GTTGAATTTGTCAGATAATG+GGG 0.582868 6_2:-2915837 Msa0905040:exon
TCATGGCTAGACACTTGTGT+TGG 0.584548 6_2:+2914297 None:intergenic
CACCCTATCTATCAGTGAGA+AGG 0.585213 6_2:-2913844 Msa0905040:three_prime_UTR
AGTGCAATATGATGGGATGT+GGG 0.589936 6_2:-2912141 Msa0905040:three_prime_UTR
GAAGAGATTGAAATAATAGA+CGG 0.590661 6_2:-2913733 Msa0905040:three_prime_UTR
AAAGGAAGAGAGGTGTGCCA+TGG 0.593587 6_2:-2914703 Msa0905040:CDS
TGCACAATCCGTATTAACAT+CGG 0.594088 6_2:+2915869 None:intergenic
AGGCTACTTTCACATACTTG+TGG 0.595394 6_2:+2912795 None:intergenic
ACATGTGTAATATGAAATGA+AGG 0.595484 6_2:+2912513 None:intergenic
AGAGACATCCTCATGTAGGA+GGG 0.597710 6_2:-2916014 Msa0905040:five_prime_UTR
AATTTGTCAGATAATGGGGC+CGG 0.597837 6_2:-2915833 Msa0905040:intron
AAAAGATATAGTCAAAGGGA+TGG 0.599825 6_2:+2913319 None:intergenic
TATGAAGAACATTGTTGTTG+CGG 0.599936 6_2:-2913265 Msa0905040:three_prime_UTR
GTAGATCTCCTGATCAGGAA+AGG 0.600023 6_2:-2914721 Msa0905040:CDS
ATTTGACATGGACTATACTC+TGG 0.601944 6_2:-2913241 Msa0905040:three_prime_UTR
AGTGAACCTGGTGATCAGAA+TGG 0.601944 6_2:-2915451 Msa0905040:CDS
AGATGAAAGTGCAATATGAT+GGG 0.605901 6_2:-2912148 Msa0905040:three_prime_UTR
CAGTCATATCATGGAGATGG+AGG 0.607315 6_2:+2912042 None:intergenic
CTATTTGGGGTATCTTAGCG+GGG 0.612934 6_2:-2913178 Msa0905040:three_prime_UTR
ACTGTTAGGTACATAGAAGT+CGG 0.614203 6_2:+2911980 None:intergenic
ATATCCTCAAGTATTTCCAC+AGG 0.614368 6_2:+2912731 None:intergenic
TTGACCTGTGGAAATACTTG+AGG 0.621259 6_2:-2912735 Msa0905040:three_prime_UTR
CAAAATCTCCAGTCTTAGGA+GGG 0.633094 6_2:-2914052 Msa0905040:three_prime_UTR
TTGTCCTTATGCTTAAAAGG+TGG 0.636379 6_2:-2914220 Msa0905040:exon
GTATTAACATCGGGAACGCA+CGG 0.638769 6_2:+2915879 None:intergenic
CAAATAACCCCTCCTACATG+AGG 0.639230 6_2:+2916006 None:intergenic
CTGGTCCAATACAAGCCTGA+AGG 0.640349 6_2:-2913222 Msa0905040:three_prime_UTR
CCTGATCAGGAAAGGAAGAG+AGG 0.641681 6_2:-2914713 Msa0905040:CDS
AACCAGTTGAGCGAATCAGT+AGG 0.655358 6_2:+2912682 None:intergenic
TTCCAGAGACATCCTCATGT+AGG 0.665591 6_2:-2916018 Msa0905040:five_prime_UTR
AGAAGATAAGGATTGACCTG+TGG 0.666013 6_2:-2912747 Msa0905040:three_prime_UTR
AATAGATGTGAATTCAACGA+TGG 0.667812 6_2:+2915487 None:intergenic
GAGACATCCTCATGTAGGAG+GGG 0.675034 6_2:-2916013 Msa0905040:five_prime_UTR
AAATATAACAGAATGCAAGA+GGG 0.685221 6_2:+2913044 None:intergenic
TAGTATCATAGAGTGTGACA+AGG 0.714772 6_2:-2913791 Msa0905040:three_prime_UTR
CCAAATCAGAACATCCATGG+AGG 0.733594 6_2:+2915969 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTAAATTTTTTAAGAT+AGG + chr6_2:2913717-2913736 None:intergenic 10.0%
!!! AATAAGATTATTTTTACTTT+GGG - chr6_2:2914464-2914483 Msa0905040:intron 10.0%
!!! AAATTCAATTTTTTACTTGT+TGG + chr6_2:2913642-2913661 None:intergenic 15.0%
!! AAGTAAAAAATTGAATTTGA+AGG - chr6_2:2913644-2913663 Msa0905040:three_prime_UTR 15.0%
!!! TCACATACTTTTAATATAAA+AGG + chr6_2:2914009-2914028 None:intergenic 15.0%
!! CAAAGTAAAAATAATCTTAT+TGG + chr6_2:2914465-2914484 None:intergenic 15.0%
!!! CAATAAGATTATTTTTACTT+TGG - chr6_2:2914463-2914482 Msa0905040:intron 15.0%
!!! TACTAAGTTGATTTTTTATA+TGG - chr6_2:2914916-2914935 Msa0905040:intron 15.0%
!!! ATTTTTTATATGGAATTACA+TGG - chr6_2:2914926-2914945 Msa0905040:intron 15.0%
!! AAAACAGCAGTAAAAAAATT+AGG + chr6_2:2912530-2912549 None:intergenic 20.0%
!! TTGGCATATAAATTTGAATA+AGG + chr6_2:2912737-2912756 None:intergenic 20.0%
!! ATCAAAACGTTATAAGAATT+TGG + chr6_2:2912756-2912775 None:intergenic 20.0%
!!! TAACAACTAAAACTGATTTT+GGG + chr6_2:2912786-2912805 None:intergenic 20.0%
!! AAATGCCTATGAATAAAATT+TGG - chr6_2:2912887-2912906 Msa0905040:three_prime_UTR 20.0%
!!! AAACACCAAATTTTATTCAT+AGG + chr6_2:2912895-2912914 None:intergenic 20.0%
!! TTAATGTGAAGAATCATATA+AGG - chr6_2:2913018-2913037 Msa0905040:three_prime_UTR 20.0%
!!! TAATTATTTAAGTTGTTGAG+CGG - chr6_2:2913468-2913487 Msa0905040:three_prime_UTR 20.0%
!! TTTGATGAAAATTCATTTAC+AGG - chr6_2:2913511-2913530 Msa0905040:three_prime_UTR 20.0%
!!! ATTTACAGGTTATTTCTATT+GGG - chr6_2:2913525-2913544 Msa0905040:three_prime_UTR 20.0%
!! TAAAAAATTGAATTTGAAGG+CGG - chr6_2:2913647-2913666 Msa0905040:three_prime_UTR 20.0%
!!! CATTGGTAATAGATAATAAA+TGG + chr6_2:2913809-2913828 None:intergenic 20.0%
!!! TTTAACTTAGTTTTAGGTAA+CGG - chr6_2:2914215-2914234 Msa0905040:exon 20.0%
!!! TTTTTACTTTGGGAATTTAT+AGG - chr6_2:2914474-2914493 Msa0905040:intron 20.0%
!! GACTATATTACTTATGATAT+TGG - chr6_2:2914542-2914561 Msa0905040:intron 20.0%
!!! TTCTAAAAGATATAGTCAAA+GGG + chr6_2:2914597-2914616 None:intergenic 20.0%
!!! TTTCTAAAAGATATAGTCAA+AGG + chr6_2:2914598-2914617 None:intergenic 20.0%
!!! AGAAACATATATTTTGTAAC+CGG - chr6_2:2914613-2914632 Msa0905040:intron 20.0%
!!! TAAAAAGTTGGTTTACTATT+TGG - chr6_2:2914716-2914735 Msa0905040:CDS 20.0%
!!! AAAAAGTTGGTTTACTATTT+GGG - chr6_2:2914717-2914736 Msa0905040:CDS 20.0%
!! GATAGAAAAGAATAAAGTAA+TGG + chr6_2:2915375-2915394 None:intergenic 20.0%
!!! TTTTTGTGTTTTTGTTAAGT+AGG - chr6_2:2915492-2915511 Msa0905040:intron 20.0%
!!! TTTTAAATTATTAGCTGTGT+CGG + chr6_2:2915612-2915631 None:intergenic 20.0%
! TAGTTGAATTTGTCAGATAA+TGG - chr6_2:2912070-2912089 Msa0905040:three_prime_UTR 25.0%
! AGTTGAATTTGTCAGATAAT+GGG - chr6_2:2912071-2912090 Msa0905040:three_prime_UTR 25.0%
!! ATTCGCCTTTCATTTTATAT+GGG - chr6_2:2912161-2912180 Msa0905040:three_prime_UTR 25.0%
! CAAAACCCATATAAAATGAA+AGG + chr6_2:2912169-2912188 None:intergenic 25.0%
! CAATTTACCAAGAATTGATA+TGG + chr6_2:2912626-2912645 None:intergenic 25.0%
! ACCATTATCTACACATTTAA+TGG - chr6_2:2912695-2912714 Msa0905040:three_prime_UTR 25.0%
! CCATTATCTACACATTTAAT+GGG - chr6_2:2912696-2912715 Msa0905040:three_prime_UTR 25.0%
!!! GTAACAACTAAAACTGATTT+TGG + chr6_2:2912787-2912806 None:intergenic 25.0%
!! TTGTTACACTACTTGATTTT+GGG - chr6_2:2912800-2912819 Msa0905040:three_prime_UTR 25.0%
! TTTACCCTTTACCTTAAATT+TGG - chr6_2:2913108-2913127 Msa0905040:three_prime_UTR 25.0%
!! TTCACCAAATTTAAGGTAAA+GGG + chr6_2:2913115-2913134 None:intergenic 25.0%
!! ATTCACCAAATTTAAGGTAA+AGG + chr6_2:2913116-2913135 None:intergenic 25.0%
! AGAAGAATTCACCAAATTTA+AGG + chr6_2:2913122-2913141 None:intergenic 25.0%
! ATATGTAGTTATTGAGAGTT+AGG - chr6_2:2913357-2913376 Msa0905040:three_prime_UTR 25.0%
!!! TGGTCTTTTACATTTTGATA+TGG - chr6_2:2913398-2913417 Msa0905040:three_prime_UTR 25.0%
!!! CATTTACAGGTTATTTCTAT+TGG - chr6_2:2913524-2913543 Msa0905040:three_prime_UTR 25.0%
! AGTAAAGTTGTCTTCTATAA+AGG + chr6_2:2913745-2913764 None:intergenic 25.0%
! AGAAGACAACTTTACTATTA+TGG - chr6_2:2913749-2913768 Msa0905040:three_prime_UTR 25.0%
! ACAACTTTACTATTATGGTA+TGG - chr6_2:2913754-2913773 Msa0905040:three_prime_UTR 25.0%
! AATATACATGATAGCATAGT+AGG + chr6_2:2913785-2913804 None:intergenic 25.0%
! TCATCTTACTACAATATCAT+TGG + chr6_2:2913826-2913845 None:intergenic 25.0%
! CCATAAGTCTAATTTCTTAA+AGG + chr6_2:2914042-2914061 None:intergenic 25.0%
!! CCTTTAAGAAATTAGACTTA+TGG - chr6_2:2914039-2914058 Msa0905040:three_prime_UTR 25.0%
! GAAGAGATTGAAATAATAGA+CGG - chr6_2:2914176-2914195 Msa0905040:three_prime_UTR 25.0%
!!! TAGTCCTTTAACTTAGTTTT+AGG - chr6_2:2914209-2914228 Msa0905040:exon 25.0%
! GTTACCTAAAACTAAGTTAA+AGG + chr6_2:2914216-2914235 None:intergenic 25.0%
! ACGATGAAAAAGAACAAATA+CGG + chr6_2:2914275-2914294 None:intergenic 25.0%
!! AAAAGTTGGTTTACTATTTG+GGG - chr6_2:2914718-2914737 Msa0905040:CDS 25.0%
!! TTTTCTTGCAGTAATTATGA+TGG - chr6_2:2914793-2914812 Msa0905040:CDS 25.0%
! TTTCTTGCAGTAATTATGAT+GGG - chr6_2:2914794-2914813 Msa0905040:CDS 25.0%
! AAATATAACAGAATGCAAGA+GGG + chr6_2:2914868-2914887 None:intergenic 25.0%
! AAAATATAACAGAATGCAAG+AGG + chr6_2:2914869-2914888 None:intergenic 25.0%
!! TCTTGCATTCTGTTATATTT+TGG - chr6_2:2914868-2914887 Msa0905040:intron 25.0%
! TAGTAAATGCAAAAGAGATA+AGG + chr6_2:2914901-2914920 None:intergenic 25.0%
! AAATTGCATTTACTAAGTGA+TGG + chr6_2:2915022-2915041 None:intergenic 25.0%
! ACTTAGTAAATGCAATTTCA+CGG - chr6_2:2915024-2915043 Msa0905040:CDS 25.0%
! AAGAATAAAGTAATGGCAAA+GGG + chr6_2:2915368-2915387 None:intergenic 25.0%
! AAAGAATAAAGTAATGGCAA+AGG + chr6_2:2915369-2915388 None:intergenic 25.0%
! ACATGTGTAATATGAAATGA+AGG + chr6_2:2915399-2915418 None:intergenic 25.0%
! TATGAAAGGATAAAAGATGT+TGG - chr6_2:2915834-2915853 Msa0905040:exon 25.0%
! AATGTAATACAGTCATATCA+TGG + chr6_2:2915879-2915898 None:intergenic 25.0%
!!! AACAATGTCTTTTTTCTTCA+AGG - chr6_2:2915957-2915976 Msa0905040:five_prime_UTR 25.0%
!! TCTGATTTGGGAATTTATGT+CGG - chr6_2:2911953-2911972 Msa0905040:three_prime_UTR 30.0%
! TTCAAGAAGACTTTGTTGTA+TGG - chr6_2:2912002-2912021 Msa0905040:three_prime_UTR 30.0%
GTTGAATTTGTCAGATAATG+GGG - chr6_2:2912072-2912091 Msa0905040:three_prime_UTR 30.0%
! GATTCGCCTTTCATTTTATA+TGG - chr6_2:2912160-2912179 Msa0905040:three_prime_UTR 30.0%
!!! TTGCAGTTTTGTTTTGTTGT+TGG - chr6_2:2912203-2912222 Msa0905040:intron 30.0%
!!! AGTTTTGTTTTGTTGTTGGT+GGG - chr6_2:2912207-2912226 Msa0905040:intron 30.0%
ACAAACACCGCTTAAATATA+CGG + chr6_2:2912244-2912263 None:intergenic 30.0%
AATAGATGTGAATTCAACGA+TGG + chr6_2:2912425-2912444 None:intergenic 30.0%
TCACATCTATTCTATTGTTG+TGG - chr6_2:2912434-2912453 Msa0905040:three_prime_UTR 30.0%
AAAGAATGAAGAATAGCAAG+AGG + chr6_2:2912592-2912611 None:intergenic 30.0%
CCCATTAAATGTGTAGATAA+TGG + chr6_2:2912699-2912718 None:intergenic 30.0%
! GTTGTTACACTACTTGATTT+TGG - chr6_2:2912799-2912818 Msa0905040:three_prime_UTR 30.0%
! TGTTACACTACTTGATTTTG+GGG - chr6_2:2912801-2912820 Msa0905040:three_prime_UTR 30.0%
AGTAGGGCTAAAATTAGTAA+TGG - chr6_2:2912836-2912855 Msa0905040:three_prime_UTR 30.0%
GTAGGGCTAAAATTAGTAAT+GGG - chr6_2:2912837-2912856 Msa0905040:three_prime_UTR 30.0%
ATGGGAATAAAATGCATTGT+AGG - chr6_2:2912855-2912874 Msa0905040:three_prime_UTR 30.0%
! TGTTTAGCATCACATGTTTT+TGG - chr6_2:2912910-2912929 Msa0905040:three_prime_UTR 30.0%
! AAAGTATCTGAAATGATACC+TGG - chr6_2:2912984-2913003 Msa0905040:three_prime_UTR 30.0%
GATGTTTGTAATATAGAAGC+CGG - chr6_2:2913052-2913071 Msa0905040:three_prime_UTR 30.0%
ACCAGAAGTTAGAATTAAAC+CGG + chr6_2:2913074-2913093 None:intergenic 30.0%
GTGAATTCTTCTGTTTATGA+TGG - chr6_2:2913130-2913149 Msa0905040:three_prime_UTR 30.0%
!!! TCTGTTTATGATGGTTTTAG+AGG - chr6_2:2913139-2913158 Msa0905040:three_prime_UTR 30.0%
! TTATGTTTTTCTTCAGTCCA+TGG + chr6_2:2913226-2913245 None:intergenic 30.0%
TTCCAAACATGCACTAATAT+CGG + chr6_2:2913307-2913326 None:intergenic 30.0%
! TATTTCTATTGGGTCTGAAA+AGG - chr6_2:2913535-2913554 Msa0905040:three_prime_UTR 30.0%
! CAAGGAATTTTGTGATCATT+AGG - chr6_2:2913586-2913605 Msa0905040:three_prime_UTR 30.0%
GTTGTCTTCTATAAAGGAAA+AGG + chr6_2:2913739-2913758 None:intergenic 30.0%
!! TGACTGAACTTCATTTTAGT+AGG - chr6_2:2913897-2913916 Msa0905040:three_prime_UTR 30.0%
GAAAAAGAACAAATACGGAA+AGG + chr6_2:2914270-2914289 None:intergenic 30.0%
! AAGGGAAACTTAACAGTTTT+AGG + chr6_2:2914363-2914382 None:intergenic 30.0%
AAAAGATATAGTCAAAGGGA+TGG + chr6_2:2914593-2914612 None:intergenic 30.0%
TGTTCTTCATATTCAATGAC+CGG + chr6_2:2914635-2914654 None:intergenic 30.0%
! TATGAAGAACATTGTTGTTG+CGG - chr6_2:2914644-2914663 Msa0905040:intron 30.0%
!! AACTTTTTAATTGTGCCTTC+AGG + chr6_2:2914705-2914724 None:intergenic 30.0%
! TGAAGGCACAATTAAAAAGT+TGG - chr6_2:2914704-2914723 Msa0905040:CDS 30.0%
TTATATGGAATTACATGGTC+AGG - chr6_2:2914931-2914950 Msa0905040:intron 30.0%
TATATGGAATTACATGGTCA+GGG - chr6_2:2914932-2914951 Msa0905040:intron 30.0%
!! GCTTGGTTTTTGACAAAAAA+AGG - chr6_2:2914954-2914973 Msa0905040:intron 30.0%
AAAAGGAGTAAATGTCTTGA+AGG - chr6_2:2914971-2914990 Msa0905040:intron 30.0%
AGTAAATGTCTTGAAGGTTA+AGG - chr6_2:2914977-2914996 Msa0905040:intron 30.0%
TTAAGGATTGTAATCCTGTA+AGG - chr6_2:2915254-2915273 Msa0905040:intron 30.0%
TCAAAAAAGTTGTTCCTTAC+AGG + chr6_2:2915271-2915290 None:intergenic 30.0%
!!! ACAACTTTTTTGAACCATCA+AGG - chr6_2:2915278-2915297 Msa0905040:intron 30.0%
AAAGTTATGATAGTCCTTGA+TGG + chr6_2:2915295-2915314 None:intergenic 30.0%
CTTTCTTTATGTGAGCAATT+TGG - chr6_2:2915465-2915484 Msa0905040:CDS 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr6_2:2915643-2915662 Msa0905040:intron 30.0%
! AGATGAAAGTGCAATATGAT+GGG - chr6_2:2915761-2915780 Msa0905040:intron 30.0%
! TTCGATTTGAGCTTTATGAA+AGG - chr6_2:2915820-2915839 Msa0905040:intron 30.0%
TAAAAGATGTTGGAATGTAG+TGG - chr6_2:2915844-2915863 Msa0905040:five_prime_UTR 30.0%
!!! TGTCTTTTTTCTTCAAGGTT+AGG - chr6_2:2915962-2915981 Msa0905040:five_prime_UTR 30.0%
TGCACAATCCGTATTAACAT+CGG + chr6_2:2912043-2912062 None:intergenic 35.0%
! ATGTTAATACGGATTGTGCA+TGG - chr6_2:2912043-2912062 Msa0905040:three_prime_UTR 35.0%
! GCCGGTACTTGAAAAATTTT+CGG - chr6_2:2912094-2912113 Msa0905040:three_prime_UTR 35.0%
!!! GCCGAAAATTTTTCAAGTAC+CGG + chr6_2:2912098-2912117 None:intergenic 35.0%
! GGTACTTGAAAAATTTTCGG+CGG - chr6_2:2912097-2912116 Msa0905040:three_prime_UTR 35.0%
TTGGGTGCATAATTTCTTTG+TGG - chr6_2:2912129-2912148 Msa0905040:three_prime_UTR 35.0%
GTGCATAATTTCTTTGTGGT+GGG - chr6_2:2912133-2912152 Msa0905040:three_prime_UTR 35.0%
TGCATAATTTCTTTGTGGTG+GGG - chr6_2:2912134-2912153 Msa0905040:three_prime_UTR 35.0%
!!! CAGTTTTGTTTTGTTGTTGG+TGG - chr6_2:2912206-2912225 Msa0905040:intron 35.0%
AAATGCAGAGAACAAAGGAA+TGG + chr6_2:2912280-2912299 None:intergenic 35.0%
ACCAAGAATTGATATGGTTG+AGG + chr6_2:2912620-2912639 None:intergenic 35.0%
AACATGTATTGCTCATATCG+TGG - chr6_2:2912958-2912977 Msa0905040:three_prime_UTR 35.0%
ACATTAACAACACTCTTTCC+AGG + chr6_2:2913005-2913024 None:intergenic 35.0%
AACCGATATTAGTGCATGTT+TGG - chr6_2:2913302-2913321 Msa0905040:three_prime_UTR 35.0%
! TTAGTGCATGTTTGGAATCT+AGG - chr6_2:2913310-2913329 Msa0905040:three_prime_UTR 35.0%
GAGAGTTAGGTATTTCCTAA+TGG - chr6_2:2913370-2913389 Msa0905040:three_prime_UTR 35.0%
TAAAAGACCACAACACCATT+AGG + chr6_2:2913388-2913407 None:intergenic 35.0%
! AAAGGTATGGAAAAGGTGAT+TGG - chr6_2:2913553-2913572 Msa0905040:three_prime_UTR 35.0%
GTGATTGGAGAAACATTTCA+AGG - chr6_2:2913568-2913587 Msa0905040:three_prime_UTR 35.0%
!! TTTTACTTGTTGGAGCTTCA+TGG + chr6_2:2913632-2913651 None:intergenic 35.0%
AAAATTGAATTTGAAGGCGG+TGG - chr6_2:2913650-2913669 Msa0905040:three_prime_UTR 35.0%
GTGTTGTCCTTATGCTTAAA+AGG - chr6_2:2913686-2913705 Msa0905040:three_prime_UTR 35.0%
TTGTCCTTATGCTTAAAAGG+TGG - chr6_2:2913689-2913708 Msa0905040:three_prime_UTR 35.0%
AACTCAAAATCTCCAGTCTT+AGG - chr6_2:2913853-2913872 Msa0905040:three_prime_UTR 35.0%
TTCCTTCTCACTGATAGATA+GGG + chr6_2:2914070-2914089 None:intergenic 35.0%
TTTCCTTCTCACTGATAGAT+AGG + chr6_2:2914071-2914090 None:intergenic 35.0%
TCTATCAGTGAGAAGGAAAT+AGG - chr6_2:2914072-2914091 Msa0905040:three_prime_UTR 35.0%
CTATCAGTGAGAAGGAAATA+GGG - chr6_2:2914073-2914092 Msa0905040:three_prime_UTR 35.0%
TAGTATCATAGAGTGTGACA+AGG - chr6_2:2914118-2914137 Msa0905040:three_prime_UTR 35.0%
GTAAGTGGAAGAAGTTAGAA+GGG + chr6_2:2914381-2914400 None:intergenic 35.0%
TGTAAGTGGAAGAAGTTAGA+AGG + chr6_2:2914382-2914401 None:intergenic 35.0%
ACTTCTTCCACTTACATTCT+TGG - chr6_2:2914386-2914405 Msa0905040:intron 35.0%
GATTCAACCAAGAATGTAAG+TGG + chr6_2:2914396-2914415 None:intergenic 35.0%
! TCCAACACATTTTGCCTAAA+AGG + chr6_2:2914514-2914533 None:intergenic 35.0%
! TTTTAGGCAAAATGTGTTGG+AGG - chr6_2:2914513-2914532 Msa0905040:intron 35.0%
! ATGAAGAACATTGTTGTTGC+GGG - chr6_2:2914645-2914664 Msa0905040:intron 35.0%
! ATTTGACATGGACTATACTC+TGG - chr6_2:2914668-2914687 Msa0905040:intron 35.0%
! TACTATTTGGGGTATCTTAG+CGG - chr6_2:2914729-2914748 Msa0905040:CDS 35.0%
!! TGCAGTAATTATGATGGGTT+TGG - chr6_2:2914799-2914818 Msa0905040:CDS 35.0%
TGTACCAAAACATGCATATC+TGG + chr6_2:2914833-2914852 None:intergenic 35.0%
TATGTGAAAGTAGCCTATCA+TGG - chr6_2:2915121-2915140 Msa0905040:intron 35.0%
CAACTCTCTAAATCCATGAT+AGG + chr6_2:2915137-2915156 None:intergenic 35.0%
AGAGTTGTCCAAAGAAGATA+AGG - chr6_2:2915150-2915169 Msa0905040:intron 35.0%
AGGTCAATCCTTATCTTCTT+TGG + chr6_2:2915161-2915180 None:intergenic 35.0%
ATATCCTCAAGTATTTCCAC+AGG + chr6_2:2915181-2915200 None:intergenic 35.0%
CTTTATGTGAGCAATTTGGT+TGG - chr6_2:2915469-2915488 Msa0905040:CDS 35.0%
CATACTATGAAGCACGTATA+CGG - chr6_2:2915551-2915570 Msa0905040:intron 35.0%
CATATGCAATCTATGAAGCA+CGG + chr6_2:2915732-2915751 None:intergenic 35.0%
! GAGATGAAAGTGCAATATGA+TGG - chr6_2:2915760-2915779 Msa0905040:intron 35.0%
ATACAGTCATATCATGGAGA+TGG + chr6_2:2915873-2915892 None:intergenic 35.0%
ACTGTTAGGTACATAGAAGT+CGG + chr6_2:2915932-2915951 None:intergenic 35.0%
GACATTGTTCACTAACTGTT+AGG + chr6_2:2915946-2915965 None:intergenic 35.0%
CTCCATGGATGTTCTGATTT+GGG - chr6_2:2911941-2911960 Msa0905040:three_prime_UTR 40.0%
TTCCCAAATCAGAACATCCA+TGG + chr6_2:2911946-2911965 None:intergenic 40.0%
GCACAATCCGTATTAACATC+GGG + chr6_2:2912042-2912061 None:intergenic 40.0%
!! AATTTGTCAGATAATGGGGC+CGG - chr6_2:2912076-2912095 Msa0905040:three_prime_UTR 40.0%
GGTGCATAATTTCTTTGTGG+TGG - chr6_2:2912132-2912151 Msa0905040:three_prime_UTR 40.0%
! TAATTTCTTTGTGGTGGGGT+TGG - chr6_2:2912138-2912157 Msa0905040:three_prime_UTR 40.0%
TCTCTCGCCGTATATTTAAG+CGG - chr6_2:2912234-2912253 Msa0905040:intron 40.0%
CAGTGAAATGCAGAGAACAA+AGG + chr6_2:2912285-2912304 None:intergenic 40.0%
!!! ACGTAAGCGTGGTTTGTTTT+TGG - chr6_2:2912392-2912411 Msa0905040:three_prime_UTR 40.0%
! TATTGTTGTGGTAGTGAACC+TGG - chr6_2:2912446-2912465 Msa0905040:three_prime_UTR 40.0%
ATTTCTCCATTCTGATCACC+AGG + chr6_2:2912467-2912486 None:intergenic 40.0%
GCCTCAACCATATCAATTCT+TGG - chr6_2:2912616-2912635 Msa0905040:three_prime_UTR 40.0%
!!! ACTACTTGATTTTGGGGTGT+GGG - chr6_2:2912807-2912826 Msa0905040:three_prime_UTR 40.0%
! GCCGGTTTAATTCTAACTTC+TGG - chr6_2:2913070-2913089 Msa0905040:three_prime_UTR 40.0%
AGAGGAATTACTGCAAAGAG+AGG - chr6_2:2913157-2913176 Msa0905040:three_prime_UTR 40.0%
! CATGTTTGGAATCTAGGAGT+AGG - chr6_2:2913316-2913335 Msa0905040:three_prime_UTR 40.0%
! GGTATTTCCTAATGGTGTTG+TGG - chr6_2:2913378-2913397 Msa0905040:three_prime_UTR 40.0%
CTATTGGGTCTGAAAAGGTA+TGG - chr6_2:2913540-2913559 Msa0905040:three_prime_UTR 40.0%
! GGTCTGAAAAGGTATGGAAA+AGG - chr6_2:2913546-2913565 Msa0905040:three_prime_UTR 40.0%
GCATAAGGACAACACTTACA+TGG + chr6_2:2913681-2913700 None:intergenic 40.0%
TCAAAATCTCCAGTCTTAGG+AGG - chr6_2:2913856-2913875 Msa0905040:three_prime_UTR 40.0%
CAAAATCTCCAGTCTTAGGA+GGG - chr6_2:2913857-2913876 Msa0905040:three_prime_UTR 40.0%
! TATTTTGTCCCTCCTAAGAC+TGG + chr6_2:2913868-2913887 None:intergenic 40.0%
!!! CTTAGTTTTAGGTAACGGCT+TGG - chr6_2:2914220-2914239 Msa0905040:exon 40.0%
! CTTTGGGAATTTATAGGCTC+AGG - chr6_2:2914480-2914499 Msa0905040:intron 40.0%
! CTCAGGCTTATAAGCCTTTT+AGG - chr6_2:2914497-2914516 Msa0905040:intron 40.0%
! GCCTTTTAGGCAAAATGTGT+TGG - chr6_2:2914510-2914529 Msa0905040:intron 40.0%
! ACTATTTGGGGTATCTTAGC+GGG - chr6_2:2914730-2914749 Msa0905040:CDS 40.0%
! GTGACCAGATATGCATGTTT+TGG - chr6_2:2914826-2914845 Msa0905040:CDS 40.0%
CTGTTTGTCTGTTGAATTGC+TGG - chr6_2:2915069-2915088 Msa0905040:intron 40.0%
GCTGGCTGTATGTATTTCAA+TGG - chr6_2:2915087-2915106 Msa0905040:intron 40.0%
! AGGCTACTTTCACATACTTG+TGG + chr6_2:2915117-2915136 None:intergenic 40.0%
AGAAGATAAGGATTGACCTG+TGG - chr6_2:2915162-2915181 Msa0905040:intron 40.0%
TTGACCTGTGGAAATACTTG+AGG - chr6_2:2915174-2915193 Msa0905040:intron 40.0%
!! CGCTCAACTGGTTGATTTTA+AGG - chr6_2:2915237-2915256 Msa0905040:intron 40.0%
! AAGTGCAATATGATGGGATG+TGG - chr6_2:2915767-2915786 Msa0905040:intron 40.0%
! AGTGCAATATGATGGGATGT+GGG - chr6_2:2915768-2915787 Msa0905040:intron 40.0%
ATGTGGGATATGATGAAAGC+AGG - chr6_2:2915784-2915803 Msa0905040:intron 40.0%
ATCTCAGATTGCTCCATCTT+CGG - chr6_2:2916008-2916027 Msa0905040:five_prime_UTR 40.0%
TTCCAGAGACATCCTCATGT+AGG - chr6_2:2911891-2911910 Msa0905040:three_prime_UTR 45.0%
AGAGACATCCTCATGTAGGA+GGG - chr6_2:2911895-2911914 Msa0905040:three_prime_UTR 45.0%
CAAATAACCCCTCCTACATG+AGG + chr6_2:2911906-2911925 None:intergenic 45.0%
CCAAATCAGAACATCCATGG+AGG + chr6_2:2911943-2911962 None:intergenic 45.0%
CCTCCATGGATGTTCTGATT+TGG - chr6_2:2911940-2911959 Msa0905040:three_prime_UTR 45.0%
GTATTAACATCGGGAACGCA+CGG + chr6_2:2912033-2912052 None:intergenic 45.0%
GTGCGTTCCCGATGTTAATA+CGG - chr6_2:2912032-2912051 Msa0905040:three_prime_UTR 45.0%
! TTTTCGGCGGCACTTCAATT+TGG - chr6_2:2912110-2912129 Msa0905040:three_prime_UTR 45.0%
TTTCGGCGGCACTTCAATTT+GGG - chr6_2:2912111-2912130 Msa0905040:three_prime_UTR 45.0%
ATACTCCTCTTACGTAAGCG+TGG - chr6_2:2912381-2912400 Msa0905040:intron 45.0%
ACAAACCACGCTTACGTAAG+AGG + chr6_2:2912389-2912408 None:intergenic 45.0%
AGTGAACCTGGTGATCAGAA+TGG - chr6_2:2912458-2912477 Msa0905040:three_prime_UTR 45.0%
!!! CACTACTTGATTTTGGGGTG+TGG - chr6_2:2912806-2912825 Msa0905040:three_prime_UTR 45.0%
TGGGGTGTGGGTATATTAGT+AGG - chr6_2:2912819-2912838 Msa0905040:three_prime_UTR 45.0%
GGGGTGTGGGTATATTAGTA+GGG - chr6_2:2912820-2912839 Msa0905040:three_prime_UTR 45.0%
TTCTGGTAGATCTCCTGATC+AGG - chr6_2:2913183-2913202 Msa0905040:three_prime_UTR 45.0%
GTAGATCTCCTGATCAGGAA+AGG - chr6_2:2913188-2913207 Msa0905040:three_prime_UTR 45.0%
GGAGTAGGTGAAGTGAAATC+AGG - chr6_2:2913331-2913350 Msa0905040:three_prime_UTR 45.0%
TCATGGCTAGACACTTGTGT+TGG + chr6_2:2913615-2913634 None:intergenic 45.0%
! GGAGCCACCTTTTAAGCATA+AGG + chr6_2:2913696-2913715 None:intergenic 45.0%
CTTCTCACTGATAGATAGGG+TGG + chr6_2:2914067-2914086 None:intergenic 45.0%
CACCCTATCTATCAGTGAGA+AGG - chr6_2:2914065-2914084 Msa0905040:three_prime_UTR 45.0%
CAAAATGTGTTGGAGGCTCA+TGG - chr6_2:2914520-2914539 Msa0905040:intron 45.0%
ATTGGCACGAGCTCATGATT+AGG - chr6_2:2914560-2914579 Msa0905040:intron 45.0%
TGTTGTTGCGGGATTTGACA+TGG - chr6_2:2914656-2914675 Msa0905040:intron 45.0%
TTGTGCCTTCAGGCTTGTAT+TGG + chr6_2:2914695-2914714 None:intergenic 45.0%
! CTATTTGGGGTATCTTAGCG+GGG - chr6_2:2914731-2914750 Msa0905040:CDS 45.0%
!! GAAAGCGTTGCAAGACAGAT+AGG + chr6_2:2914762-2914781 None:intergenic 45.0%
AACAGAATGCAAGAGGGAGT+TGG + chr6_2:2914862-2914881 None:intergenic 45.0%
CGAATCAGTAGGGCATATTC+TGG + chr6_2:2915219-2915238 None:intergenic 45.0%
ACCAGTTGAGCGAATCAGTA+GGG + chr6_2:2915229-2915248 None:intergenic 45.0%
AACCAGTTGAGCGAATCAGT+AGG + chr6_2:2915230-2915249 None:intergenic 45.0%
CAAAGGGATGCTTAGCAGTT+AGG + chr6_2:2915352-2915371 None:intergenic 45.0%
ATGAAGCACGTATACGGACA+CGG - chr6_2:2915557-2915576 Msa0905040:intron 45.0%
CAGTCATATCATGGAGATGG+AGG + chr6_2:2915870-2915889 None:intergenic 45.0%
AGCTGACACATTACCGAAGA+TGG + chr6_2:2916024-2916043 None:intergenic 45.0%
CTCCTACATGAGGATGTCTC+TGG + chr6_2:2911896-2911915 None:intergenic 50.0%
CAGAGACATCCTCATGTAGG+AGG - chr6_2:2911894-2911913 Msa0905040:three_prime_UTR 50.0%
GAGACATCCTCATGTAGGAG+GGG - chr6_2:2911896-2911915 Msa0905040:three_prime_UTR 50.0%
CAGAACATCCATGGAGGAGT+TGG + chr6_2:2911937-2911956 None:intergenic 50.0%
ACTGCAAAGAGAGGCTCTTC+TGG - chr6_2:2913166-2913185 Msa0905040:three_prime_UTR 50.0%
CCTCTCTTCCTTTCCTGATC+AGG + chr6_2:2913199-2913218 None:intergenic 50.0%
CCTGATCAGGAAAGGAAGAG+AGG - chr6_2:2913196-2913215 Msa0905040:three_prime_UTR 50.0%
! AAAGGAAGAGAGGTGTGCCA+TGG - chr6_2:2913206-2913225 Msa0905040:three_prime_UTR 50.0%
CTGGTCCAATACAAGCCTGA+AGG - chr6_2:2914687-2914706 Msa0905040:CDS 50.0%
GGAATTACATGGTCAGGGCT+TGG - chr6_2:2914937-2914956 Msa0905040:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG - chr6_2:2915654-2915673 Msa0905040:intron 50.0%
ACACGACACTTGTTCGACAC+CGG - chr6_2:2915683-2915702 Msa0905040:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + chr6_2:2915721-2915740 None:intergenic 50.0%
CGCTAGATCCAACTCCTCCA+TGG - chr6_2:2911926-2911945 Msa0905040:three_prime_UTR 55.0%
!! GCCCTACTGATTCGCTCAAC+TGG - chr6_2:2915225-2915244 Msa0905040:intron 55.0%
ACGTATACGGACACGGACAC+CGG - chr6_2:2915564-2915583 Msa0905040:intron 55.0%
GTCAGTGTCTGTGTCGTGTC+CGG + chr6_2:2915586-2915605 None:intergenic 55.0%
CACGACACTTGTTCGACACC+GGG - chr6_2:2915684-2915703 Msa0905040:intron 55.0%
!! TGTCGGTGTCGTGTCGGTGT+CGG - chr6_2:2915660-2915679 Msa0905040:intron 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr6_2:2915705-2915724 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr6_2:2915715-2915734 None:intergenic 60.0%
ACCGGGACACGCCTAATCCG+AGG - chr6_2:2915701-2915720 Msa0905040:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 2911860 2916071 2911860 ID=Msa0905040;Name=Msa0905040
chr6_2 mRNA 2911860 2916071 2911860 ID=Msa0905040-mRNA-1;Parent=Msa0905040;Name=Msa0905040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=229|0.6|0.66|1|0.6|0.5|6|2172|160
chr6_2 exon 2911860 2912189 2911860 ID=Msa0905040-mRNA-1:exon:931;Parent=Msa0905040-mRNA-1
chr6_2 exon 2912385 2914398 2912385 ID=Msa0905040-mRNA-1:exon:930;Parent=Msa0905040-mRNA-1
chr6_2 exon 2914686 2914863 2914686 ID=Msa0905040-mRNA-1:exon:929;Parent=Msa0905040-mRNA-1
chr6_2 exon 2915000 2915054 2915000 ID=Msa0905040-mRNA-1:exon:928;Parent=Msa0905040-mRNA-1
chr6_2 exon 2915441 2915509 2915441 ID=Msa0905040-mRNA-1:exon:927;Parent=Msa0905040-mRNA-1
chr6_2 exon 2915834 2916071 2915834 ID=Msa0905040-mRNA-1:exon:926;Parent=Msa0905040-mRNA-1
chr6_2 five_prime_UTR 2915843 2916071 2915843 ID=Msa0905040-mRNA-1:five_prime_utr;Parent=Msa0905040-mRNA-1
chr6_2 CDS 2915834 2915842 2915834 ID=Msa0905040-mRNA-1:cds;Parent=Msa0905040-mRNA-1
chr6_2 CDS 2915441 2915509 2915441 ID=Msa0905040-mRNA-1:cds;Parent=Msa0905040-mRNA-1
chr6_2 CDS 2915000 2915054 2915000 ID=Msa0905040-mRNA-1:cds;Parent=Msa0905040-mRNA-1
chr6_2 CDS 2914686 2914863 2914686 ID=Msa0905040-mRNA-1:cds;Parent=Msa0905040-mRNA-1
chr6_2 CDS 2914227 2914398 2914227 ID=Msa0905040-mRNA-1:cds;Parent=Msa0905040-mRNA-1
chr6_2 three_prime_UTR 2912385 2914226 2912385 ID=Msa0905040-mRNA-1:three_prime_utr;Parent=Msa0905040-mRNA-1
chr6_2 three_prime_UTR 2911860 2912189 2911860 ID=Msa0905040-mRNA-1:three_prime_utr;Parent=Msa0905040-mRNA-1
Gene Sequence

>Msa0905040

ATGGGGCCGCCATCGTTGAATTCACATCTATTCTATTGTTGTGGTAGTGAACCTGGTGATCAGAATGGAGAAATTACAGTGTTTGATAAAATGCCTATGAATAAAATTTGGTGTTTAGCATCACATGTTTTTGAAGCCGGTTTAATTCTAACTTCTGGTTATAGTACTACTGCTTTACCCTTTACCTTAAATTTGGTGAATTCTTCTGTTTATGATGGTTTTAGAGGAATTACTGCAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAGGAAAGGAAGAGAGGTGTGCCATGGACTGAAGAAAAACATAAGTTATTTCTATTGGGTCTGAAAAGGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAATTTTGTGATCATTAGGACGCCAACACAAGTGTCTAGCCATGAAGCTCCAACAAGTAAAAAATTGAATTTGAAGGCGGTGGCAAAACCATGTAAGTGTTGTCCTTATGCTTAA
Protein sequence

>Msa0905040

MGPPSLNSHLFYCCGSEPGDQNGEITVFDKMPMNKIWCLASHVFEAGLILTSGYSTTALPFTLNLVNSSVYDGFRGITAKRGSSGRSPDQERKRGVPWTEEKHKLFLLGLKRYGKGDWRNISRNFVIIRTPTQVSSHEAPTSKKLNLKAVAKPCKCCPYA*