Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666060 | XP_039689013.1 | 92.857 | 350 | 21 | 2 | 1 | 349 | 1 | 347 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666060 | sp|Q54I39|IST1L_DICDI | 27.439 | 164 | 109 | 3 | 21 | 175 | 17 | 179 | 5.65e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666060 | A0A396HZ73 | 93.714 | 350 | 21 | 1 | 1 | 349 | 1 | 350 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628670 | Msa0666060 | 0.938622 | 4.964700e-99 | -8.615850e-47 |
| Msa0666060 | Msa0923030 | 0.801001 | 1.106404e-48 | -8.615850e-47 |
| Msa0666060 | Msa1113800 | 0.806059 | 9.887992e-50 | -8.615850e-47 |
| Msa0666060 | Msa1160500 | 0.803157 | 3.985446e-49 | -8.615850e-47 |
| Msa0588390 | Msa0666060 | 0.800031 | 1.743896e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666060 | MtrunA17_Chr4g0004491 | 93.714 | 350 | 21 | 1 | 1 | 349 | 1 | 350 | 0.0 | 644 |
| Msa0666060 | MtrunA17_Chr2g0331801 | 50.329 | 304 | 134 | 6 | 4 | 297 | 1 | 297 | 5.87e-85 | 263 |
| Msa0666060 | MtrunA17_Chr8g0390551 | 48.187 | 193 | 98 | 2 | 4 | 195 | 1 | 192 | 2.24e-50 | 177 |
| Msa0666060 | MtrunA17_Chr6g0485461 | 41.593 | 226 | 122 | 2 | 4 | 228 | 57 | 273 | 4.92e-43 | 158 |
| Msa0666060 | MtrunA17_Chr8g0370931 | 35.602 | 191 | 112 | 4 | 15 | 194 | 29 | 219 | 1.42e-28 | 114 |
| Msa0666060 | MtrunA17_Chr1g0209771 | 30.653 | 199 | 127 | 4 | 13 | 200 | 13 | 211 | 7.23e-26 | 105 |
| Msa0666060 | MtrunA17_Chr6g0487991 | 32.432 | 185 | 112 | 4 | 4 | 178 | 1 | 182 | 8.13e-24 | 102 |
| Msa0666060 | MtrunA17_Chr2g0324121 | 32.759 | 174 | 107 | 3 | 4 | 167 | 1 | 174 | 5.53e-20 | 91.3 |
| Msa0666060 | MtrunA17_Chr6g0464791 | 31.915 | 188 | 117 | 4 | 15 | 191 | 15 | 202 | 1.00e-19 | 90.5 |
| Msa0666060 | MtrunA17_Chr4g0042021 | 30.726 | 179 | 112 | 3 | 4 | 173 | 1 | 176 | 9.65e-18 | 83.6 |
| Msa0666060 | MtrunA17_Chr7g0214961 | 26.286 | 175 | 117 | 3 | 8 | 171 | 3 | 176 | 4.49e-15 | 75.9 |
| Msa0666060 | MtrunA17_Chr1g0210081 | 24.074 | 162 | 112 | 3 | 21 | 171 | 22 | 183 | 1.76e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666060 | AT1G79910.1 | 34.474 | 380 | 211 | 7 | 4 | 346 | 1 | 379 | 1.69e-69 | 222 |
| Msa0666060 | AT1G52315.1 | 46.774 | 186 | 97 | 1 | 4 | 187 | 1 | 186 | 7.17e-52 | 176 |
| Msa0666060 | AT1G79910.3 | 31.366 | 322 | 183 | 7 | 62 | 346 | 4 | 324 | 4.63e-45 | 157 |
| Msa0666060 | AT1G79910.2 | 31.464 | 321 | 182 | 7 | 63 | 346 | 46 | 365 | 1.58e-44 | 157 |
| Msa0666060 | AT4G32350.1 | 41.398 | 186 | 108 | 1 | 4 | 188 | 1 | 186 | 1.06e-40 | 152 |
| Msa0666060 | AT4G32350.3 | 41.398 | 186 | 108 | 1 | 4 | 188 | 1 | 186 | 1.06e-40 | 152 |
| Msa0666060 | AT1G52315.2 | 50.000 | 120 | 58 | 1 | 70 | 187 | 17 | 136 | 4.66e-36 | 132 |
| Msa0666060 | AT4G35730.1 | 36.471 | 170 | 98 | 3 | 15 | 174 | 29 | 198 | 8.29e-27 | 110 |
| Msa0666060 | AT1G34220.2 | 33.163 | 196 | 120 | 4 | 15 | 199 | 15 | 210 | 4.15e-25 | 106 |
| Msa0666060 | AT4G32350.2 | 47.959 | 98 | 50 | 1 | 92 | 188 | 1 | 98 | 4.17e-23 | 100 |
| Msa0666060 | AT1G25420.1 | 30.729 | 192 | 122 | 4 | 13 | 193 | 13 | 204 | 1.34e-22 | 97.1 |
| Msa0666060 | AT2G14830.1 | 32.796 | 186 | 115 | 3 | 4 | 179 | 1 | 186 | 8.07e-22 | 95.9 |
| Msa0666060 | AT1G25420.4 | 31.073 | 177 | 111 | 4 | 28 | 193 | 1 | 177 | 5.55e-20 | 89.4 |
| Msa0666060 | AT1G34220.1 | 28.761 | 226 | 120 | 5 | 15 | 199 | 15 | 240 | 6.80e-20 | 91.3 |
| Msa0666060 | AT2G19710.1 | 28.723 | 188 | 121 | 4 | 1 | 178 | 1 | 185 | 1.55e-18 | 87.4 |
| Msa0666060 | AT4G29440.1 | 28.191 | 188 | 122 | 4 | 1 | 178 | 1 | 185 | 3.32e-18 | 86.7 |
| Msa0666060 | AT1G25420.3 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 2.89e-16 | 77.8 |
| Msa0666060 | AT1G25420.2 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 2.89e-16 | 77.8 |
| Msa0666060 | AT4G29440.2 | 30.380 | 158 | 99 | 4 | 31 | 178 | 1 | 157 | 5.97e-16 | 79.7 |
| Msa0666060 | AT1G13340.1 | 26.994 | 163 | 109 | 2 | 19 | 171 | 20 | 182 | 4.83e-15 | 76.3 |
Find 57 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCATTGAAAAGTTTAT+TGG | 0.167219 | 4_4:-5913412 | Msa0666060:CDS |
| ATGACATTGTTGAGCTTCTT+AGG | 0.233734 | 4_4:-5913755 | Msa0666060:CDS |
| ATGATTATGATGCATATAAA+AGG | 0.235920 | 4_4:-5913725 | Msa0666060:CDS |
| AAAGATAAGAATAAGCATTT+AGG | 0.240134 | 4_4:+5914188 | None:intergenic |
| CTTATCTTCATTTCTCTTGT+AGG | 0.244844 | 4_4:+5912943 | None:intergenic |
| TTTACCTCTTTATTTATATA+TGG | 0.273867 | 4_4:+5913107 | None:intergenic |
| AGCCTAAGTTCTATTCAAAA+TGG | 0.300907 | 4_4:-5914003 | Msa0666060:intron |
| GTTCTAAGGTCACGCAATTC+TGG | 0.310148 | 4_4:+5913164 | None:intergenic |
| CATCATCACTACTACTATAT+TGG | 0.314596 | 4_4:+5911946 | None:intergenic |
| AAAGCTAGTTCAAGTTCATT+TGG | 0.341711 | 4_4:-5911879 | Msa0666060:CDS |
| TTTCTGTAAACAAAGTTCTA+AGG | 0.349616 | 4_4:+5913150 | None:intergenic |
| ATAGCTTCTTTGCATTCCTC+AGG | 0.361399 | 4_4:+5913227 | None:intergenic |
| CAATAATAGGGGACACAATC+TGG | 0.389420 | 4_4:-5912038 | Msa0666060:intron |
| GGGACACAATCTGGTGGAAC+TGG | 0.393720 | 4_4:-5912029 | Msa0666060:CDS |
| GACTGAAGGGCTTCTGTTTG+AGG | 0.394923 | 4_4:-5913455 | Msa0666060:CDS |
| CTGGAAGATCATAGAAACTT+AGG | 0.399058 | 4_4:-5911563 | Msa0666060:exon |
| ATTCTATGATACAAATGTTT+CGG | 0.401953 | 4_4:-5914036 | Msa0666060:exon |
| GCAATAAAATCATCATAATC+AGG | 0.413576 | 4_4:+5911603 | None:intergenic |
| CACAAGAGTTCTCTATAGAA+TGG | 0.414870 | 4_4:-5912903 | Msa0666060:CDS |
| TTACTTACTTCATATAATGA+TGG | 0.428302 | 4_4:+5912844 | None:intergenic |
| GTTGAAACTTCATCATCAAA+AGG | 0.428329 | 4_4:-5911672 | Msa0666060:CDS |
| GAAGTTTCAACTGATGTTGT+TGG | 0.468439 | 4_4:+5911684 | None:intergenic |
| CTACAAGAGAAATGAAGATA+AGG | 0.485405 | 4_4:-5912942 | Msa0666060:CDS |
| TACTTACTTCATATAATGAT+GGG | 0.486277 | 4_4:+5912845 | None:intergenic |
| GCTCGTCTTAAAGCTTTCAC+TGG | 0.489333 | 4_4:-5911582 | Msa0666060:CDS |
| AAAAGGGTATGCACAAATGT+GGG | 0.502279 | 4_4:-5911655 | Msa0666060:CDS |
| CTCTATAGAATGGGATGGGA+AGG | 0.509202 | 4_4:-5912893 | Msa0666060:CDS |
| TTGAAACTTCATCATCAAAA+GGG | 0.517541 | 4_4:-5911671 | Msa0666060:CDS |
| CAATCTGGTGGAACTGGAGG+AGG | 0.518100 | 4_4:-5912023 | Msa0666060:CDS |
| ACAAGAGTTCTCTATAGAAT+GGG | 0.518976 | 4_4:-5912902 | Msa0666060:CDS |
| TTGCATTTGAAGCAGACTGA+AGG | 0.522662 | 4_4:-5913469 | Msa0666060:intron |
| TGAACCATATATAAATAAAG+AGG | 0.522792 | 4_4:-5913111 | Msa0666060:intron |
| TGATTATGATGCATATAAAA+GGG | 0.524055 | 4_4:-5913724 | Msa0666060:intron |
| AATTAAGTCCATGCACCACT+AGG | 0.528291 | 4_4:+5911487 | None:intergenic |
| CAAAAGGGTATGCACAAATG+TGG | 0.540716 | 4_4:-5911656 | Msa0666060:CDS |
| TGCATTTGAAGCAGACTGAA+GGG | 0.541515 | 4_4:-5913468 | Msa0666060:intron |
| CACAAATGTGGGGTGGTGCA+TGG | 0.552893 | 4_4:-5911644 | Msa0666060:CDS |
| TAGCTTCTTTGCATTCCTCA+GGG | 0.557331 | 4_4:+5913228 | None:intergenic |
| GAGTTCTCTATAGAATGGGA+TGG | 0.565030 | 4_4:-5912898 | Msa0666060:CDS |
| GCTGCAGCATACATCAATGA+TGG | 0.570480 | 4_4:+5913203 | None:intergenic |
| CTATGATACAAATGTTTCGG+TGG | 0.572455 | 4_4:-5914033 | Msa0666060:CDS |
| TTTGTATCATAGAATATATG+AGG | 0.573235 | 4_4:+5914044 | None:intergenic |
| ACATCACCATCTCATCATCA+TGG | 0.573332 | 4_4:-5911906 | Msa0666060:CDS |
| TTTCTTCCATGATGATGAGA+TGG | 0.575256 | 4_4:+5911900 | None:intergenic |
| ACACAATCTGGTGGAACTGG+AGG | 0.583170 | 4_4:-5912026 | Msa0666060:CDS |
| TCATAATCAGGTAGAGTCGA+AGG | 0.585505 | 4_4:+5911615 | None:intergenic |
| TTGAAGAGTTAGTTAAGCAG+AGG | 0.591111 | 4_4:-5913372 | Msa0666060:intron |
| TTATACACCCTAGTGGTGCA+TGG | 0.593928 | 4_4:-5911495 | Msa0666060:three_prime_UTR |
| CAAGACGCGGTTAGAGACGA+TGG | 0.595738 | 4_4:-5913814 | Msa0666060:CDS |
| AGTTCTCTATAGAATGGGAT+GGG | 0.599718 | 4_4:-5912897 | Msa0666060:CDS |
| ATTAAGTCCATGCACCACTA+GGG | 0.603819 | 4_4:+5911488 | None:intergenic |
| AAAGGGTATGCACAAATGTG+GGG | 0.675761 | 4_4:-5911654 | Msa0666060:CDS |
| TTAATTATTATACACCCTAG+TGG | 0.681350 | 4_4:-5911502 | Msa0666060:three_prime_UTR |
| GGGTATGCACAAATGTGGGG+TGG | 0.692191 | 4_4:-5911651 | Msa0666060:CDS |
| ACATAAAATGTATCAAGACG+CGG | 0.698780 | 4_4:-5913827 | Msa0666060:CDS |
| TAATAGGGGACACAATCTGG+TGG | 0.702753 | 4_4:-5912035 | Msa0666060:intron |
| CTTATATAGTGAATGCCCTG+AGG | 0.705982 | 4_4:-5913243 | Msa0666060:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTGAAAAAAAAATTATT+TGG | - | chr4_4:5911748-5911767 | Msa0666060:CDS | 10.0% |
| !! | AAAAATATGTTGAAATATTT+CGG | - | chr4_4:5913015-5913034 | Msa0666060:intron | 10.0% |
| !! | AGATTAACAAAATTATAAAA+TGG | - | chr4_4:5913186-5913205 | Msa0666060:CDS | 10.0% |
| !!! | GTTTATTCTAATTTATGTTT+TGG | - | chr4_4:5911776-5911795 | Msa0666060:CDS | 15.0% |
| !!! | TTTACCTCTTTATTTATATA+TGG | + | chr4_4:5912562-5912581 | None:intergenic | 15.0% |
| !!! | GAAATATTTCAACATATTTT+TGG | + | chr4_4:5913016-5913035 | None:intergenic | 15.0% |
| !! | TGATATTTGATTAATTTCAA+TGG | - | chr4_4:5913300-5913319 | Msa0666060:intron | 15.0% |
| !! | GATATTTGATTAATTTCAAT+GGG | - | chr4_4:5913301-5913320 | Msa0666060:intron | 15.0% |
| !! | AAAGATAAGAATAAGCATTT+AGG | + | chr4_4:5911481-5911500 | None:intergenic | 20.0% |
| !! | TTTGTATCATAGAATATATG+AGG | + | chr4_4:5911625-5911644 | None:intergenic | 20.0% |
| !! | ATTCTATGATACAAATGTTT+CGG | - | chr4_4:5911630-5911649 | Msa0666060:CDS | 20.0% |
| !!! | AAAATCACAATTTTAGTTAC+TGG | + | chr4_4:5911705-5911724 | None:intergenic | 20.0% |
| !! | ATGATTATGATGCATATAAA+AGG | - | chr4_4:5911941-5911960 | Msa0666060:CDS | 20.0% |
| !! | TGATTATGATGCATATAAAA+GGG | - | chr4_4:5911942-5911961 | Msa0666060:CDS | 20.0% |
| !! | TACTTGTAAGCAAAATTTAA+TGG | + | chr4_4:5911986-5912005 | None:intergenic | 20.0% |
| !! | CATGACAATAAATTAAACAT+TGG | - | chr4_4:5912031-5912050 | Msa0666060:CDS | 20.0% |
| !! | GAATTCATTGAAAAGTTTAT+TGG | - | chr4_4:5912254-5912273 | Msa0666060:intron | 20.0% |
| !! | ATTTAGTGCATATACATATA+AGG | + | chr4_4:5912329-5912348 | None:intergenic | 20.0% |
| !!! | ACTTTGTTTACAGAAAAATA+TGG | - | chr4_4:5912523-5912542 | Msa0666060:intron | 20.0% |
| !! | TGAACCATATATAAATAAAG+AGG | - | chr4_4:5912555-5912574 | Msa0666060:intron | 20.0% |
| !! | TACTTACTTCATATAATGAT+GGG | + | chr4_4:5912824-5912843 | None:intergenic | 20.0% |
| !! | TTACTTACTTCATATAATGA+TGG | + | chr4_4:5912825-5912844 | None:intergenic | 20.0% |
| !! | TATAAAATGGTTCATGAAAT+TGG | - | chr4_4:5913199-5913218 | Msa0666060:CDS | 20.0% |
| !! | CTTTATAGGACTAATATAAT+TGG | + | chr4_4:5913230-5913249 | None:intergenic | 20.0% |
| !! | GTATGTAAAAGAATCTTTAT+AGG | + | chr4_4:5913244-5913263 | None:intergenic | 20.0% |
| !! | TTTACATACTAATGTGATTA+TGG | - | chr4_4:5913255-5913274 | Msa0666060:intron | 20.0% |
| !! | TTACATACTAATGTGATTAT+GGG | - | chr4_4:5913256-5913275 | Msa0666060:intron | 20.0% |
| !!! | TGTTGGATATTTTAAAAGTT+GGG | + | chr4_4:5913368-5913387 | None:intergenic | 20.0% |
| !!! | ATGTTGGATATTTTAAAAGT+TGG | + | chr4_4:5913369-5913388 | None:intergenic | 20.0% |
| !!! | ACATTTCACTTTTAGTCAAT+AGG | - | chr4_4:5911595-5911614 | Msa0666060:CDS | 25.0% |
| !!! | CATTTCACTTTTAGTCAATA+GGG | - | chr4_4:5911596-5911615 | Msa0666060:CDS | 25.0% |
| !! | TACCATTTTGAATAGAACTT+AGG | + | chr4_4:5911668-5911687 | None:intergenic | 25.0% |
| !!! | TCTAATTTATGTTTTGGCTT+TGG | - | chr4_4:5911782-5911801 | Msa0666060:CDS | 25.0% |
| ! | TTTCTGTAAACAAAGTTCTA+AGG | + | chr4_4:5912519-5912538 | None:intergenic | 25.0% |
| !!! | TAGTCACAATGTTTTTTTGA+AGG | + | chr4_4:5912869-5912888 | None:intergenic | 25.0% |
| !!! | ATATTTTTGGATGTTTTACG+TGG | + | chr4_4:5913003-5913022 | None:intergenic | 25.0% |
| !!! | TTTTTTTGACTCTTCAATCA+AGG | + | chr4_4:5913156-5913175 | None:intergenic | 25.0% |
| !! | AGTTACCTTATTCACAATTT+TGG | - | chr4_4:5913339-5913358 | Msa0666060:intron | 25.0% |
| ! | AACAACTCATTTCTATGTTT+GGG | + | chr4_4:5913499-5913518 | None:intergenic | 25.0% |
| ! | TAACAACTCATTTCTATGTT+TGG | + | chr4_4:5913500-5913519 | None:intergenic | 25.0% |
| ! | TACATAAACTGACCAATAAT+AGG | - | chr4_4:5913615-5913634 | Msa0666060:intron | 25.0% |
| ! | ACATAAACTGACCAATAATA+GGG | - | chr4_4:5913616-5913635 | Msa0666060:intron | 25.0% |
| !!! | TATTAGTTTTTTGTGGTTTG+AGG | + | chr4_4:5913885-5913904 | None:intergenic | 25.0% |
| !!! | CCTTTGTTATTAGTTTTTTG+TGG | + | chr4_4:5913892-5913911 | None:intergenic | 25.0% |
| ! | CCACAAAAAACTAATAACAA+AGG | - | chr4_4:5913889-5913908 | Msa0666060:intron | 25.0% |
| !! | GAATCAATATTTTTCTCTAG+TGG | + | chr4_4:5913949-5913968 | None:intergenic | 25.0% |
| !!! | GAGAAAAATATTGATTCAAG+TGG | - | chr4_4:5913952-5913971 | Msa0666060:intron | 25.0% |
| ! | TTGAAACTTCATCATCAAAA+GGG | - | chr4_4:5913995-5914014 | Msa0666060:intron | 25.0% |
| ! | GCAATAAAATCATCATAATC+AGG | + | chr4_4:5914066-5914085 | None:intergenic | 25.0% |
| ! | TTAATTATTATACACCCTAG+TGG | - | chr4_4:5914164-5914183 | Msa0666060:five_prime_UTR | 25.0% |
| !! | ATATTTTAGAGGCAATGTTG+TGG | + | chr4_4:5911556-5911575 | None:intergenic | 30.0% |
| !! | GATGTTGTTGGATATTTTAG+AGG | + | chr4_4:5911567-5911586 | None:intergenic | 30.0% |
| ! | ATGTCTTTTCTTGATGTTGT+TGG | + | chr4_4:5911579-5911598 | None:intergenic | 30.0% |
| AGCCTAAGTTCTATTCAAAA+TGG | - | chr4_4:5911663-5911682 | Msa0666060:CDS | 30.0% | |
| ACATAAAATGTATCAAGACG+CGG | - | chr4_4:5911839-5911858 | Msa0666060:CDS | 30.0% | |
| ! | CTTTTCAATGAATTCATAGC+AGG | + | chr4_4:5912249-5912268 | None:intergenic | 30.0% |
| CTTATCTTCATTTCTCTTGT+AGG | + | chr4_4:5912726-5912745 | None:intergenic | 30.0% | |
| CTACAAGAGAAATGAAGATA+AGG | - | chr4_4:5912724-5912743 | Msa0666060:intron | 30.0% | |
| ACAAGAGTTCTCTATAGAAT+GGG | - | chr4_4:5912764-5912783 | Msa0666060:intron | 30.0% | |
| !!! | TCGGATTTTAGAATCCAAAT+AGG | - | chr4_4:5913034-5913053 | Msa0666060:intron | 30.0% |
| !!! | CGGATTTTAGAATCCAAATA+GGG | - | chr4_4:5913035-5913054 | Msa0666060:intron | 30.0% |
| ! | TCATATGGTGGAAAAAGTAA+TGG | - | chr4_4:5913070-5913089 | Msa0666060:intron | 30.0% |
| GGATACCAAAATTGTGAATA+AGG | + | chr4_4:5913347-5913366 | None:intergenic | 30.0% | |
| AAAATCAACCTCAAATGCAT+AGG | + | chr4_4:5913400-5913419 | None:intergenic | 30.0% | |
| CATAAACTGACCAATAATAG+GGG | - | chr4_4:5913617-5913636 | Msa0666060:intron | 30.0% | |
| CATCATCACTACTACTATAT+TGG | + | chr4_4:5913723-5913742 | None:intergenic | 30.0% | |
| ! | AAAGCTAGTTCAAGTTCATT+TGG | - | chr4_4:5913787-5913806 | Msa0666060:CDS | 30.0% |
| !!! | TTTTTTGTGGTTTGAGGTAA+GGG | + | chr4_4:5913879-5913898 | None:intergenic | 30.0% |
| ! | TTCAGAATCTGATGTTTTGT+TGG | + | chr4_4:5913926-5913945 | None:intergenic | 30.0% |
| GTTGAAACTTCATCATCAAA+AGG | - | chr4_4:5913994-5914013 | Msa0666060:intron | 30.0% | |
| CTATGATACAAATGTTTCGG+TGG | - | chr4_4:5911633-5911652 | Msa0666060:CDS | 35.0% | |
| ATGACATTGTTGAGCTTCTT+AGG | - | chr4_4:5911911-5911930 | Msa0666060:CDS | 35.0% | |
| TTGAAGAGTTAGTTAAGCAG+AGG | - | chr4_4:5912294-5912313 | Msa0666060:intron | 35.0% | |
| TTGAGTATACTCTACAAGAG+TGG | + | chr4_4:5912594-5912613 | None:intergenic | 35.0% | |
| CACAAGAGTTCTCTATAGAA+TGG | - | chr4_4:5912763-5912782 | Msa0666060:intron | 35.0% | |
| AGTTCTCTATAGAATGGGAT+GGG | - | chr4_4:5912769-5912788 | Msa0666060:intron | 35.0% | |
| TATATATATCCAAGCGAACG+AGG | - | chr4_4:5912893-5912912 | Msa0666060:CDS | 35.0% | |
| ! | TACGTGGTTTTTATGCAGTT+CGG | + | chr4_4:5912987-5913006 | None:intergenic | 35.0% |
| ATTGAGTGATTCACCTACTT+TGG | - | chr4_4:5913129-5913148 | Msa0666060:CDS | 35.0% | |
| ! | GTGCTTTGTCTCATTTTGTT+TGG | + | chr4_4:5913701-5913720 | None:intergenic | 35.0% |
| ! | TTTCTTCCATGATGATGAGA+TGG | + | chr4_4:5913769-5913788 | None:intergenic | 35.0% |
| GGAATTAGCAAAAAGGAACT+TGG | + | chr4_4:5913853-5913872 | None:intergenic | 35.0% | |
| !! | TTTTTGTGGTTTGAGGTAAG+GGG | + | chr4_4:5913878-5913897 | None:intergenic | 35.0% |
| !!! | GTTTTTTGTGGTTTGAGGTA+AGG | + | chr4_4:5913880-5913899 | None:intergenic | 35.0% |
| GAAGTTTCAACTGATGTTGT+TGG | + | chr4_4:5913985-5914004 | None:intergenic | 35.0% | |
| ! | AAAAGGGTATGCACAAATGT+GGG | - | chr4_4:5914011-5914030 | Msa0666060:CDS | 35.0% |
| CTGGAAGATCATAGAAACTT+AGG | - | chr4_4:5914103-5914122 | Msa0666060:five_prime_UTR | 35.0% | |
| ACATGTGATACGTGTTGTGT+CGG | - | chr4_4:5912091-5912110 | Msa0666060:intron | 40.0% | |
| ! | TTGCATTTGAAGCAGACTGA+AGG | - | chr4_4:5912197-5912216 | Msa0666060:intron | 40.0% |
| ! | TGCATTTGAAGCAGACTGAA+GGG | - | chr4_4:5912198-5912217 | Msa0666060:intron | 40.0% |
| CTTATATAGTGAATGCCCTG+AGG | - | chr4_4:5912423-5912442 | Msa0666060:intron | 40.0% | |
| TAGCTTCTTTGCATTCCTCA+GGG | + | chr4_4:5912441-5912460 | None:intergenic | 40.0% | |
| ATAGCTTCTTTGCATTCCTC+AGG | + | chr4_4:5912442-5912461 | None:intergenic | 40.0% | |
| ACTCTACAAGAGTGGATCAT+TGG | + | chr4_4:5912586-5912605 | None:intergenic | 40.0% | |
| CTCAACTTCTCGACAAACTA+AGG | + | chr4_4:5912696-5912715 | None:intergenic | 40.0% | |
| GAGTTCTCTATAGAATGGGA+TGG | - | chr4_4:5912768-5912787 | Msa0666060:intron | 40.0% | |
| GGATTAAATCCGAACTCCAT+AGG | + | chr4_4:5912966-5912985 | None:intergenic | 40.0% | |
| CTTCAATCAAGGACCAAAGT+AGG | + | chr4_4:5913145-5913164 | None:intergenic | 40.0% | |
| TGCATAGGTGGAGAAAATGT+TGG | + | chr4_4:5913385-5913404 | None:intergenic | 40.0% | |
| TTTCTCCACCTATGCATTTG+AGG | - | chr4_4:5913389-5913408 | Msa0666060:CDS | 40.0% | |
| ATCAACCTCAAATGCATAGG+TGG | + | chr4_4:5913397-5913416 | None:intergenic | 40.0% | |
| CAGATTGTGTCCCCTATTAT+TGG | + | chr4_4:5913630-5913649 | None:intergenic | 40.0% | |
| CAATAATAGGGGACACAATC+TGG | - | chr4_4:5913628-5913647 | Msa0666060:intron | 40.0% | |
| ACATCACCATCTCATCATCA+TGG | - | chr4_4:5913760-5913779 | Msa0666060:CDS | 40.0% | |
| !! | TTTTGTGGTTTGAGGTAAGG+GGG | + | chr4_4:5913877-5913896 | None:intergenic | 40.0% |
| ! | CAAAAGGGTATGCACAAATG+TGG | - | chr4_4:5914010-5914029 | Msa0666060:CDS | 40.0% |
| ! | AAAGGGTATGCACAAATGTG+GGG | - | chr4_4:5914012-5914031 | Msa0666060:CDS | 40.0% |
| TCATAATCAGGTAGAGTCGA+AGG | + | chr4_4:5914054-5914073 | None:intergenic | 40.0% | |
| ATTAAGTCCATGCACCACTA+GGG | + | chr4_4:5914181-5914200 | None:intergenic | 40.0% | |
| AATTAAGTCCATGCACCACT+AGG | + | chr4_4:5914182-5914201 | None:intergenic | 40.0% | |
| GCTGCAGCATACATCAATGA+TGG | + | chr4_4:5912466-5912485 | None:intergenic | 45.0% | |
| !! | GTTCTAAGGTCACGCAATTC+TGG | + | chr4_4:5912505-5912524 | None:intergenic | 45.0% |
| CTCTATAGAATGGGATGGGA+AGG | - | chr4_4:5912773-5912792 | Msa0666060:intron | 45.0% | |
| AAACAAATGCCTCGTTCGCT+TGG | + | chr4_4:5912905-5912924 | None:intergenic | 45.0% | |
| TAATAGGGGACACAATCTGG+TGG | - | chr4_4:5913631-5913650 | Msa0666060:intron | 45.0% | |
| AGGGGGTGGAATTAGCAAAA+AGG | + | chr4_4:5913860-5913879 | None:intergenic | 45.0% | |
| GCTCGTCTTAAAGCTTTCAC+TGG | - | chr4_4:5914084-5914103 | Msa0666060:five_prime_UTR | 45.0% | |
| TTATACACCCTAGTGGTGCA+TGG | - | chr4_4:5914171-5914190 | Msa0666060:five_prime_UTR | 45.0% | |
| ! | GATACGTGTTGTGTCGGTGT+TGG | - | chr4_4:5912097-5912116 | Msa0666060:intron | 50.0% |
| GACTGAAGGGCTTCTGTTTG+AGG | - | chr4_4:5912211-5912230 | Msa0666060:intron | 50.0% | |
| TGAGCTTCTCACGAGTCCTA+TGG | - | chr4_4:5912947-5912966 | Msa0666060:CDS | 50.0% | |
| CTCACGAGTCCTATGGAGTT+CGG | - | chr4_4:5912954-5912973 | Msa0666060:CDS | 50.0% | |
| AGCTTCTTGCACGCCCTATT+TGG | + | chr4_4:5913051-5913070 | None:intergenic | 50.0% | |
| CGTGCAAGAAGCTCATATGG+TGG | - | chr4_4:5913058-5913077 | Msa0666060:intron | 50.0% | |
| ACACAATCTGGTGGAACTGG+AGG | - | chr4_4:5913640-5913659 | Msa0666060:intron | 50.0% | |
| CAAGACGCGGTTAGAGACGA+TGG | - | chr4_4:5911852-5911871 | Msa0666060:CDS | 55.0% | |
| GGGCGTGCAAGAAGCTCATA+TGG | - | chr4_4:5913055-5913074 | Msa0666060:intron | 55.0% | |
| GGGACACAATCTGGTGGAAC+TGG | - | chr4_4:5913637-5913656 | Msa0666060:intron | 55.0% | |
| CAATCTGGTGGAACTGGAGG+AGG | - | chr4_4:5913643-5913662 | Msa0666060:intron | 55.0% | |
| ! | TGTGGTTTGAGGTAAGGGGG+TGG | + | chr4_4:5913874-5913893 | None:intergenic | 55.0% |
| GGGTATGCACAAATGTGGGG+TGG | - | chr4_4:5914015-5914034 | Msa0666060:CDS | 55.0% | |
| CACAAATGTGGGGTGGTGCA+TGG | - | chr4_4:5914022-5914041 | Msa0666060:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 5911456 | 5914232 | 5911456 | ID=Msa0666060;Name=Msa0666060 |
| chr4_4 | mRNA | 5911456 | 5914232 | 5911456 | ID=Msa0666060-mRNA-1;Parent=Msa0666060;Name=Msa0666060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=179|1|1|1|0.8|0.66|6|116|349 |
| chr4_4 | exon | 5911456 | 5912051 | 5911456 | ID=Msa0666060-mRNA-1:exon:1921;Parent=Msa0666060-mRNA-1 |
| chr4_4 | exon | 5912852 | 5912989 | 5912852 | ID=Msa0666060-mRNA-1:exon:1920;Parent=Msa0666060-mRNA-1 |
| chr4_4 | exon | 5913112 | 5913256 | 5913112 | ID=Msa0666060-mRNA-1:exon:1919;Parent=Msa0666060-mRNA-1 |
| chr4_4 | exon | 5913373 | 5913476 | 5913373 | ID=Msa0666060-mRNA-1:exon:1918;Parent=Msa0666060-mRNA-1 |
| chr4_4 | exon | 5913725 | 5913857 | 5913725 | ID=Msa0666060-mRNA-1:exon:1917;Parent=Msa0666060-mRNA-1 |
| chr4_4 | exon | 5914004 | 5914232 | 5914004 | ID=Msa0666060-mRNA-1:exon:1916;Parent=Msa0666060-mRNA-1 |
| chr4_4 | five_prime_UTR | 5914054 | 5914232 | 5914054 | ID=Msa0666060-mRNA-1:five_prime_utr;Parent=Msa0666060-mRNA-1 |
| chr4_4 | CDS | 5914004 | 5914053 | 5914004 | ID=Msa0666060-mRNA-1:cds;Parent=Msa0666060-mRNA-1 |
| chr4_4 | CDS | 5913725 | 5913857 | 5913725 | ID=Msa0666060-mRNA-1:cds;Parent=Msa0666060-mRNA-1 |
| chr4_4 | CDS | 5913373 | 5913476 | 5913373 | ID=Msa0666060-mRNA-1:cds;Parent=Msa0666060-mRNA-1 |
| chr4_4 | CDS | 5913112 | 5913256 | 5913112 | ID=Msa0666060-mRNA-1:cds;Parent=Msa0666060-mRNA-1 |
| chr4_4 | CDS | 5912852 | 5912989 | 5912852 | ID=Msa0666060-mRNA-1:cds;Parent=Msa0666060-mRNA-1 |
| chr4_4 | CDS | 5911572 | 5912051 | 5911572 | ID=Msa0666060-mRNA-1:cds;Parent=Msa0666060-mRNA-1 |
| chr4_4 | three_prime_UTR | 5911456 | 5911571 | 5911456 | ID=Msa0666060-mRNA-1:three_prime_utr;Parent=Msa0666060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
