Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628670 | XP_003604452.3 | 96.286 | 350 | 12 | 1 | 1 | 349 | 1 | 350 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628670 | sp|Q54I39|IST1L_DICDI | 27.439 | 164 | 109 | 3 | 21 | 175 | 17 | 179 | 1.48e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628670 | A0A396HZ73 | 96.286 | 350 | 12 | 1 | 1 | 349 | 1 | 350 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628670 | Msa0666060 | 0.938622 | 4.964700e-99 | -8.615850e-47 |
| Msa0628670 | Msa0699840 | 0.806980 | 6.319932e-50 | -8.615850e-47 |
| Msa0628670 | Msa0796160 | 0.801491 | 8.780425e-49 | -8.615850e-47 |
| Msa0628670 | Msa0820390 | 0.810863 | 9.329956e-51 | -8.615850e-47 |
| Msa0628670 | Msa0922980 | 0.804811 | 1.805879e-49 | -8.615850e-47 |
| Msa0628670 | Msa0996680 | 0.804358 | 2.244620e-49 | -8.615850e-47 |
| Msa0628670 | Msa1020630 | 0.811259 | 7.656502e-51 | -8.615850e-47 |
| Msa0628670 | Msa1031930 | 0.803252 | 3.808505e-49 | -8.615850e-47 |
| Msa0628670 | Msa1113800 | 0.820681 | 6.031299e-53 | -8.615850e-47 |
| Msa0628670 | Msa1160500 | 0.820070 | 8.329025e-53 | -8.615850e-47 |
| Msa0628670 | Msa1184330 | 0.800966 | 1.124502e-48 | -8.615850e-47 |
| Msa0164400 | Msa0628670 | 0.801371 | 9.290868e-49 | -8.615850e-47 |
| Msa0194820 | Msa0628670 | 0.812260 | 4.636929e-51 | -8.615850e-47 |
| Msa0194840 | Msa0628670 | 0.819034 | 1.435101e-52 | -8.615850e-47 |
| Msa0388770 | Msa0628670 | 0.805474 | 1.311639e-49 | -8.615850e-47 |
| Msa0393150 | Msa0628670 | 0.813473 | 2.514910e-51 | -8.615850e-47 |
| Msa0531460 | Msa0628670 | 0.838834 | 2.272595e-57 | -8.615850e-47 |
| Msa0588390 | Msa0628670 | 0.841641 | 4.200549e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628670 | MtrunA17_Chr4g0004491 | 96.286 | 350 | 12 | 1 | 1 | 349 | 1 | 350 | 0.0 | 696 |
| Msa0628670 | MtrunA17_Chr2g0331801 | 50.329 | 304 | 134 | 6 | 4 | 297 | 1 | 297 | 2.48e-85 | 264 |
| Msa0628670 | MtrunA17_Chr8g0390551 | 48.705 | 193 | 97 | 2 | 4 | 195 | 1 | 192 | 1.20e-51 | 181 |
| Msa0628670 | MtrunA17_Chr6g0485461 | 42.035 | 226 | 121 | 2 | 4 | 228 | 57 | 273 | 2.56e-44 | 161 |
| Msa0628670 | MtrunA17_Chr8g0370931 | 36.126 | 191 | 111 | 4 | 15 | 194 | 29 | 219 | 5.62e-30 | 119 |
| Msa0628670 | MtrunA17_Chr1g0209771 | 31.156 | 199 | 126 | 4 | 13 | 200 | 13 | 211 | 3.54e-27 | 109 |
| Msa0628670 | MtrunA17_Chr6g0487991 | 32.973 | 185 | 111 | 4 | 4 | 178 | 1 | 182 | 4.64e-25 | 106 |
| Msa0628670 | MtrunA17_Chr2g0324121 | 33.333 | 174 | 106 | 3 | 4 | 167 | 1 | 174 | 3.03e-21 | 94.7 |
| Msa0628670 | MtrunA17_Chr6g0464791 | 32.447 | 188 | 116 | 4 | 15 | 191 | 15 | 202 | 5.24e-21 | 94.4 |
| Msa0628670 | MtrunA17_Chr4g0042021 | 30.726 | 179 | 112 | 3 | 4 | 173 | 1 | 176 | 6.48e-18 | 84.0 |
| Msa0628670 | MtrunA17_Chr7g0214961 | 26.286 | 175 | 117 | 3 | 8 | 171 | 3 | 176 | 2.97e-15 | 76.6 |
| Msa0628670 | MtrunA17_Chr1g0210081 | 24.074 | 162 | 112 | 3 | 21 | 171 | 22 | 183 | 1.22e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628670 | AT1G79910.1 | 34.474 | 380 | 211 | 7 | 4 | 346 | 1 | 379 | 8.39e-70 | 223 |
| Msa0628670 | AT1G52315.1 | 47.312 | 186 | 96 | 1 | 4 | 187 | 1 | 186 | 1.64e-53 | 180 |
| Msa0628670 | AT1G79910.3 | 31.366 | 322 | 183 | 7 | 62 | 346 | 4 | 324 | 3.75e-45 | 157 |
| Msa0628670 | AT1G79910.2 | 31.464 | 321 | 182 | 7 | 63 | 346 | 46 | 365 | 1.45e-44 | 157 |
| Msa0628670 | AT4G32350.1 | 41.935 | 186 | 107 | 1 | 4 | 188 | 1 | 186 | 5.58e-42 | 155 |
| Msa0628670 | AT4G32350.3 | 41.935 | 186 | 107 | 1 | 4 | 188 | 1 | 186 | 5.58e-42 | 155 |
| Msa0628670 | AT1G52315.2 | 50.000 | 120 | 58 | 1 | 70 | 187 | 17 | 136 | 4.33e-36 | 132 |
| Msa0628670 | AT4G35730.1 | 37.059 | 170 | 97 | 3 | 15 | 174 | 29 | 198 | 4.13e-28 | 114 |
| Msa0628670 | AT1G34220.2 | 33.673 | 196 | 119 | 4 | 15 | 199 | 15 | 210 | 2.29e-26 | 110 |
| Msa0628670 | AT1G25420.1 | 31.250 | 192 | 121 | 4 | 13 | 193 | 13 | 204 | 7.32e-24 | 100 |
| Msa0628670 | AT2G14830.1 | 33.333 | 186 | 114 | 3 | 4 | 179 | 1 | 186 | 3.49e-23 | 99.8 |
| Msa0628670 | AT4G32350.2 | 47.959 | 98 | 50 | 1 | 92 | 188 | 1 | 98 | 4.21e-23 | 100 |
| Msa0628670 | AT1G25420.4 | 31.638 | 177 | 110 | 4 | 28 | 193 | 1 | 177 | 2.78e-21 | 92.8 |
| Msa0628670 | AT1G34220.1 | 29.204 | 226 | 119 | 5 | 15 | 199 | 15 | 240 | 3.96e-21 | 95.1 |
| Msa0628670 | AT2G19710.1 | 29.255 | 188 | 120 | 4 | 1 | 178 | 1 | 185 | 9.93e-20 | 91.3 |
| Msa0628670 | AT4G29440.1 | 28.723 | 188 | 121 | 4 | 1 | 178 | 1 | 185 | 2.24e-19 | 90.1 |
| Msa0628670 | AT4G29440.2 | 31.013 | 158 | 98 | 4 | 31 | 178 | 1 | 157 | 4.22e-17 | 83.2 |
| Msa0628670 | AT1G25420.3 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 2.94e-16 | 77.8 |
| Msa0628670 | AT1G25420.2 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 2.94e-16 | 77.8 |
| Msa0628670 | AT1G13340.1 | 27.607 | 163 | 108 | 2 | 19 | 171 | 20 | 182 | 3.31e-16 | 79.7 |
Find 57 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCATTGAAAAGTTTAT+TGG | 0.167219 | 4_3:-9311677 | Msa0628670:CDS |
| CTGGAAGATCATAGAAAATT+AGG | 0.182221 | 4_3:-9309827 | Msa0628670:exon |
| ATGACATTGTTGAGCTTCTT+AGG | 0.233734 | 4_3:-9312020 | Msa0628670:CDS |
| AAAGATAAGAATAAGCATTT+AGG | 0.240134 | 4_3:+9312452 | None:intergenic |
| CTTATCTTCATTTCTCTTGT+AGG | 0.244844 | 4_3:+9311208 | None:intergenic |
| TTTACCTCTTTATTTATATA+TGG | 0.273867 | 4_3:+9311372 | None:intergenic |
| AGCCTAAGTTCTATTCAAAA+TGG | 0.300907 | 4_3:-9312267 | Msa0628670:intron |
| GTTCTAAGGTCACGCAATTC+TGG | 0.310148 | 4_3:+9311429 | None:intergenic |
| CATCATCACTACTACTATAT+TGG | 0.314596 | 4_3:+9310210 | None:intergenic |
| AAAGCTAGTTCAAGTTCATT+TGG | 0.341711 | 4_3:-9310143 | Msa0628670:CDS |
| TTTCTGTAAACAAAGTTCTA+AGG | 0.349616 | 4_3:+9311415 | None:intergenic |
| ATAGCTTCTTTGCATTCCTC+AGG | 0.361399 | 4_3:+9311492 | None:intergenic |
| CAATAATAGGGGACACAATC+TGG | 0.389420 | 4_3:-9310302 | Msa0628670:intron |
| GGGACACAATCTGGTGGAAC+TGG | 0.393720 | 4_3:-9310293 | Msa0628670:CDS |
| GACTGAAGGGCTTCTGTTTG+AGG | 0.394923 | 4_3:-9311720 | Msa0628670:CDS |
| ATTCTATGATACAAATGTTT+CGG | 0.401953 | 4_3:-9312300 | Msa0628670:exon |
| GCAATAAAATCATCATAATC+AGG | 0.413576 | 4_3:+9309867 | None:intergenic |
| CACAAGAGTTCTCTATAGAA+TGG | 0.414870 | 4_3:-9311168 | Msa0628670:CDS |
| TTACTTACTTCATATAATGA+TGG | 0.428302 | 4_3:+9311109 | None:intergenic |
| GTTGAAACTTCATCATCAAA+AGG | 0.428329 | 4_3:-9309936 | Msa0628670:CDS |
| ATGATTATGATGCATACAAA+AGG | 0.454117 | 4_3:-9311990 | Msa0628670:CDS |
| GAAGTTTCAACTGATGTTGT+TGG | 0.468439 | 4_3:+9309948 | None:intergenic |
| CTACAAGAGAAATGAAGATA+AGG | 0.485405 | 4_3:-9311207 | Msa0628670:CDS |
| TACTTACTTCATATAATGAT+GGG | 0.486277 | 4_3:+9311110 | None:intergenic |
| GCTCGTCTTAAAGCTTTCAC+TGG | 0.489333 | 4_3:-9309846 | Msa0628670:CDS |
| AAAAGGGTATGCACAAATGT+GGG | 0.502279 | 4_3:-9309919 | Msa0628670:CDS |
| CTCTATAGAATGGGATGGGA+AGG | 0.509202 | 4_3:-9311158 | Msa0628670:CDS |
| TTGAAACTTCATCATCAAAA+GGG | 0.517541 | 4_3:-9309935 | Msa0628670:CDS |
| CAATCTGGTGGAACTGGAGG+AGG | 0.518100 | 4_3:-9310287 | Msa0628670:CDS |
| ACAAGAGTTCTCTATAGAAT+GGG | 0.518976 | 4_3:-9311167 | Msa0628670:CDS |
| TTGCATTTGAAGCAGACTGA+AGG | 0.522662 | 4_3:-9311734 | Msa0628670:intron |
| TGAACCATATATAAATAAAG+AGG | 0.522792 | 4_3:-9311376 | Msa0628670:intron |
| AATTAAGTAGATGCACCACT+AGG | 0.540525 | 4_3:+9309743 | None:intergenic |
| CAAAAGGGTATGCACAAATG+TGG | 0.540716 | 4_3:-9309920 | Msa0628670:CDS |
| TGCATTTGAAGCAGACTGAA+GGG | 0.541515 | 4_3:-9311733 | Msa0628670:intron |
| CACAAATGTGGGGTGGTGCA+TGG | 0.552893 | 4_3:-9309908 | Msa0628670:CDS |
| ATTGTTGAGCTTCTTAGGAG+TGG | 0.553106 | 4_3:-9312015 | Msa0628670:CDS |
| TAGCTTCTTTGCATTCCTCA+GGG | 0.557331 | 4_3:+9311493 | None:intergenic |
| TGATTATGATGCATACAAAA+GGG | 0.561869 | 4_3:-9311989 | Msa0628670:intron |
| GAGTTCTCTATAGAATGGGA+TGG | 0.565030 | 4_3:-9311163 | Msa0628670:CDS |
| GCTGCAGCATACATCAATGA+TGG | 0.570480 | 4_3:+9311468 | None:intergenic |
| CTATGATACAAATGTTTCGG+TGG | 0.572455 | 4_3:-9312297 | Msa0628670:CDS |
| TTTGTATCATAGAATATATG+AGG | 0.573235 | 4_3:+9312308 | None:intergenic |
| ACATCACCATCTCATCATCA+TGG | 0.573332 | 4_3:-9310170 | Msa0628670:CDS |
| TTTCTTCCATGATGATGAGA+TGG | 0.575256 | 4_3:+9310164 | None:intergenic |
| ACACAATCTGGTGGAACTGG+AGG | 0.583170 | 4_3:-9310290 | Msa0628670:CDS |
| TCATAATCAGGTAGAGTCGA+AGG | 0.585505 | 4_3:+9309879 | None:intergenic |
| TTGAAGAGTTAGTTAAGCAG+AGG | 0.591111 | 4_3:-9311637 | Msa0628670:intron |
| CAAGACGCGGTTAGAGACGA+TGG | 0.595738 | 4_3:-9312079 | Msa0628670:CDS |
| AGTTCTCTATAGAATGGGAT+GGG | 0.599718 | 4_3:-9311162 | Msa0628670:CDS |
| ATTAAGTAGATGCACCACTA+GGG | 0.618154 | 4_3:+9309744 | None:intergenic |
| AAAGGGTATGCACAAATGTG+GGG | 0.675761 | 4_3:-9309918 | Msa0628670:CDS |
| TTAATTATTATACACCCTAG+TGG | 0.681350 | 4_3:-9309758 | Msa0628670:three_prime_UTR |
| GGGTATGCACAAATGTGGGG+TGG | 0.692191 | 4_3:-9309915 | Msa0628670:CDS |
| ACATAAAATGTATCAAGACG+CGG | 0.698780 | 4_3:-9312092 | Msa0628670:CDS |
| TAATAGGGGACACAATCTGG+TGG | 0.702753 | 4_3:-9310299 | Msa0628670:intron |
| CTTATATAGTGAATGCCCTG+AGG | 0.705982 | 4_3:-9311508 | Msa0628670:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATGTTGAAATATTT+CGG | - | chr4_3:9311271-9311290 | Msa0628670:intron | 10.0% |
| !! | AGATTAACAAAATTATAAAA+TGG | - | chr4_3:9311442-9311461 | Msa0628670:CDS | 10.0% |
| !!! | GTTTATTCTAATTTATGTTT+TGG | - | chr4_3:9310033-9310052 | Msa0628670:CDS | 15.0% |
| !!! | TTTACCTCTTTATTTATATA+TGG | + | chr4_3:9310817-9310836 | None:intergenic | 15.0% |
| !!! | GAAATATTTCAACATATTTT+TGG | + | chr4_3:9311272-9311291 | None:intergenic | 15.0% |
| !! | TGATATTTGATTAATTTCAA+TGG | - | chr4_3:9311556-9311575 | Msa0628670:intron | 15.0% |
| !! | GATATTTGATTAATTTCAAT+GGG | - | chr4_3:9311557-9311576 | Msa0628670:intron | 15.0% |
| !! | AAAGATAAGAATAAGCATTT+AGG | + | chr4_3:9309737-9309756 | None:intergenic | 20.0% |
| !! | TTTGTATCATAGAATATATG+AGG | + | chr4_3:9309881-9309900 | None:intergenic | 20.0% |
| !! | ATTCTATGATACAAATGTTT+CGG | - | chr4_3:9309886-9309905 | Msa0628670:CDS | 20.0% |
| !!! | AAAATCACAATTTTAGTTAC+TGG | + | chr4_3:9309961-9309980 | None:intergenic | 20.0% |
| !! | TACTTGTAAGCAAAATTTAA+TGG | + | chr4_3:9310241-9310260 | None:intergenic | 20.0% |
| !! | CATGACAATAAATTAAACAT+TGG | - | chr4_3:9310286-9310305 | Msa0628670:CDS | 20.0% |
| !! | GAATTCATTGAAAAGTTTAT+TGG | - | chr4_3:9310509-9310528 | Msa0628670:intron | 20.0% |
| !! | ATTTAGTGCATATACATATA+AGG | + | chr4_3:9310584-9310603 | None:intergenic | 20.0% |
| !!! | ACTTTGTTTACAGAAAAATA+TGG | - | chr4_3:9310778-9310797 | Msa0628670:intron | 20.0% |
| !! | TGAACCATATATAAATAAAG+AGG | - | chr4_3:9310810-9310829 | Msa0628670:intron | 20.0% |
| !! | TACTTACTTCATATAATGAT+GGG | + | chr4_3:9311079-9311098 | None:intergenic | 20.0% |
| !! | TTACTTACTTCATATAATGA+TGG | + | chr4_3:9311080-9311099 | None:intergenic | 20.0% |
| !! | TATAAAATGGTTCATGAAAT+TGG | - | chr4_3:9311455-9311474 | Msa0628670:CDS | 20.0% |
| !! | CTTTATAGGACTAATATAAT+TGG | + | chr4_3:9311486-9311505 | None:intergenic | 20.0% |
| !! | GTATGTAAAAGAATCTTTAT+AGG | + | chr4_3:9311500-9311519 | None:intergenic | 20.0% |
| !! | TTTACATACTAATGTGATTA+TGG | - | chr4_3:9311511-9311530 | Msa0628670:intron | 20.0% |
| !! | TTACATACTAATGTGATTAT+GGG | - | chr4_3:9311512-9311531 | Msa0628670:intron | 20.0% |
| !!! | TGTTGGATATTTTAAAAGTT+GGG | + | chr4_3:9311624-9311643 | None:intergenic | 20.0% |
| !!! | ATGTTGGATATTTTAAAAGT+TGG | + | chr4_3:9311625-9311644 | None:intergenic | 20.0% |
| !!! | ACATTTCACTTTTAGTCAAT+AGG | - | chr4_3:9309851-9309870 | Msa0628670:CDS | 25.0% |
| !!! | CATTTCACTTTTAGTCAATA+GGG | - | chr4_3:9309852-9309871 | Msa0628670:CDS | 25.0% |
| !! | TACCATTTTGAATAGAACTT+AGG | + | chr4_3:9309924-9309943 | None:intergenic | 25.0% |
| !!! | TCTAATTTATGTTTTGGCTT+TGG | - | chr4_3:9310039-9310058 | Msa0628670:CDS | 25.0% |
| ! | ATGATTATGATGCATACAAA+AGG | - | chr4_3:9310196-9310215 | Msa0628670:CDS | 25.0% |
| ! | TGATTATGATGCATACAAAA+GGG | - | chr4_3:9310197-9310216 | Msa0628670:CDS | 25.0% |
| ! | TTTCTGTAAACAAAGTTCTA+AGG | + | chr4_3:9310774-9310793 | None:intergenic | 25.0% |
| !!! | TAGTCACAATGTTTTTTTGA+AGG | + | chr4_3:9311124-9311143 | None:intergenic | 25.0% |
| !!! | ATATTTTTGGATGTTTTACG+TGG | + | chr4_3:9311259-9311278 | None:intergenic | 25.0% |
| !!! | TTTTTTTGACTCTTCAATCA+AGG | + | chr4_3:9311412-9311431 | None:intergenic | 25.0% |
| !! | AGTTACCTTATTCACAATTT+TGG | - | chr4_3:9311595-9311614 | Msa0628670:intron | 25.0% |
| ! | AACAACTCATTTCTATGTTT+GGG | + | chr4_3:9311755-9311774 | None:intergenic | 25.0% |
| ! | TAACAACTCATTTCTATGTT+TGG | + | chr4_3:9311756-9311775 | None:intergenic | 25.0% |
| ! | TACATAAACTGACCAATAAT+AGG | - | chr4_3:9311871-9311890 | Msa0628670:intron | 25.0% |
| ! | ACATAAACTGACCAATAATA+GGG | - | chr4_3:9311872-9311891 | Msa0628670:intron | 25.0% |
| !!! | TATTAGTTTTTTGTGGTTTG+AGG | + | chr4_3:9312141-9312160 | None:intergenic | 25.0% |
| !!! | CCTTTGTTATTAGTTTTTTG+TGG | + | chr4_3:9312148-9312167 | None:intergenic | 25.0% |
| ! | CCACAAAAAACTAATAACAA+AGG | - | chr4_3:9312145-9312164 | Msa0628670:intron | 25.0% |
| !! | GAATCAATATTTTTCTCTAG+TGG | + | chr4_3:9312205-9312224 | None:intergenic | 25.0% |
| !!! | GAGAAAAATATTGATTCAAG+TGG | - | chr4_3:9312208-9312227 | Msa0628670:intron | 25.0% |
| ! | TTGAAACTTCATCATCAAAA+GGG | - | chr4_3:9312251-9312270 | Msa0628670:intron | 25.0% |
| ! | GCAATAAAATCATCATAATC+AGG | + | chr4_3:9312322-9312341 | None:intergenic | 25.0% |
| ! | TTAATTATTATACACCCTAG+TGG | - | chr4_3:9312428-9312447 | Msa0628670:five_prime_UTR | 25.0% |
| !! | GATGTTGTTGGATATTTTAG+AGG | + | chr4_3:9309823-9309842 | None:intergenic | 30.0% |
| ! | ATGTCTTTTCTTGATGTTGT+TGG | + | chr4_3:9309835-9309854 | None:intergenic | 30.0% |
| AGCCTAAGTTCTATTCAAAA+TGG | - | chr4_3:9309919-9309938 | Msa0628670:CDS | 30.0% | |
| ACATAAAATGTATCAAGACG+CGG | - | chr4_3:9310094-9310113 | Msa0628670:CDS | 30.0% | |
| ! | CTTTTCAATGAATTCATAGC+AGG | + | chr4_3:9310504-9310523 | None:intergenic | 30.0% |
| CTTATCTTCATTTCTCTTGT+AGG | + | chr4_3:9310981-9311000 | None:intergenic | 30.0% | |
| CTACAAGAGAAATGAAGATA+AGG | - | chr4_3:9310979-9310998 | Msa0628670:intron | 30.0% | |
| ACAAGAGTTCTCTATAGAAT+GGG | - | chr4_3:9311019-9311038 | Msa0628670:intron | 30.0% | |
| !!! | TCGGATTTTAGAATCCAAAT+AGG | - | chr4_3:9311290-9311309 | Msa0628670:intron | 30.0% |
| !!! | CGGATTTTAGAATCCAAATA+GGG | - | chr4_3:9311291-9311310 | Msa0628670:intron | 30.0% |
| ! | TCATATGGTGGAAAAAGTAA+TGG | - | chr4_3:9311326-9311345 | Msa0628670:intron | 30.0% |
| GGATACCAAAATTGTGAATA+AGG | + | chr4_3:9311603-9311622 | None:intergenic | 30.0% | |
| AAAATCAACCTCAAATGCAT+AGG | + | chr4_3:9311656-9311675 | None:intergenic | 30.0% | |
| CATAAACTGACCAATAATAG+GGG | - | chr4_3:9311873-9311892 | Msa0628670:intron | 30.0% | |
| CATCATCACTACTACTATAT+TGG | + | chr4_3:9311979-9311998 | None:intergenic | 30.0% | |
| ! | AAAGCTAGTTCAAGTTCATT+TGG | - | chr4_3:9312043-9312062 | Msa0628670:CDS | 30.0% |
| !!! | TTTTTTGTGGTTTGAGGTAA+GGG | + | chr4_3:9312135-9312154 | None:intergenic | 30.0% |
| ! | TTCAGAATCTGATGTTTTGT+TGG | + | chr4_3:9312182-9312201 | None:intergenic | 30.0% |
| GTTGAAACTTCATCATCAAA+AGG | - | chr4_3:9312250-9312269 | Msa0628670:intron | 30.0% | |
| CTGGAAGATCATAGAAAATT+AGG | - | chr4_3:9312359-9312378 | Msa0628670:five_prime_UTR | 30.0% | |
| !! | ATATTTTAGAGGCGATGTTG+TGG | + | chr4_3:9309812-9309831 | None:intergenic | 35.0% |
| CTATGATACAAATGTTTCGG+TGG | - | chr4_3:9309889-9309908 | Msa0628670:CDS | 35.0% | |
| ATGACATTGTTGAGCTTCTT+AGG | - | chr4_3:9310166-9310185 | Msa0628670:CDS | 35.0% | |
| TTGAAGAGTTAGTTAAGCAG+AGG | - | chr4_3:9310549-9310568 | Msa0628670:intron | 35.0% | |
| TTGAGTATACTCTACAAGAG+TGG | + | chr4_3:9310849-9310868 | None:intergenic | 35.0% | |
| CTCAACTTCTCAACAAACTA+AGG | + | chr4_3:9310951-9310970 | None:intergenic | 35.0% | |
| CACAAGAGTTCTCTATAGAA+TGG | - | chr4_3:9311018-9311037 | Msa0628670:intron | 35.0% | |
| AGTTCTCTATAGAATGGGAT+GGG | - | chr4_3:9311024-9311043 | Msa0628670:intron | 35.0% | |
| TATATATATCCAAGCGAACG+AGG | - | chr4_3:9311148-9311167 | Msa0628670:CDS | 35.0% | |
| ! | TACGTGGTTTTTATGCAGTT+CGG | + | chr4_3:9311243-9311262 | None:intergenic | 35.0% |
| ATTGAGTGATTCACCTACTT+TGG | - | chr4_3:9311385-9311404 | Msa0628670:CDS | 35.0% | |
| ! | GTGCTTTGTCTCATTTTGTT+TGG | + | chr4_3:9311957-9311976 | None:intergenic | 35.0% |
| ! | TTTCTTCCATGATGATGAGA+TGG | + | chr4_3:9312025-9312044 | None:intergenic | 35.0% |
| GGAATTAGCAAAAAGGAACT+TGG | + | chr4_3:9312109-9312128 | None:intergenic | 35.0% | |
| !! | TTTTTGTGGTTTGAGGTAAG+GGG | + | chr4_3:9312134-9312153 | None:intergenic | 35.0% |
| !!! | GTTTTTTGTGGTTTGAGGTA+AGG | + | chr4_3:9312136-9312155 | None:intergenic | 35.0% |
| GAAGTTTCAACTGATGTTGT+TGG | + | chr4_3:9312241-9312260 | None:intergenic | 35.0% | |
| ! | AAAAGGGTATGCACAAATGT+GGG | - | chr4_3:9312267-9312286 | Msa0628670:intron | 35.0% |
| ATTAAGTAGATGCACCACTA+GGG | + | chr4_3:9312445-9312464 | None:intergenic | 35.0% | |
| AATTAAGTAGATGCACCACT+AGG | + | chr4_3:9312446-9312465 | None:intergenic | 35.0% | |
| ATTGTTGAGCTTCTTAGGAG+TGG | - | chr4_3:9310171-9310190 | Msa0628670:CDS | 40.0% | |
| ACATGTGATACGTGTTGTGT+CGG | - | chr4_3:9310346-9310365 | Msa0628670:intron | 40.0% | |
| ! | TTGCATTTGAAGCAGACTGA+AGG | - | chr4_3:9310452-9310471 | Msa0628670:intron | 40.0% |
| ! | TGCATTTGAAGCAGACTGAA+GGG | - | chr4_3:9310453-9310472 | Msa0628670:intron | 40.0% |
| CTTATATAGTGAATGCCCTG+AGG | - | chr4_3:9310678-9310697 | Msa0628670:intron | 40.0% | |
| TAGCTTCTTTGCATTCCTCA+GGG | + | chr4_3:9310696-9310715 | None:intergenic | 40.0% | |
| ATAGCTTCTTTGCATTCCTC+AGG | + | chr4_3:9310697-9310716 | None:intergenic | 40.0% | |
| ACTCTACAAGAGTGGATCAT+TGG | + | chr4_3:9310841-9310860 | None:intergenic | 40.0% | |
| GAGTTCTCTATAGAATGGGA+TGG | - | chr4_3:9311023-9311042 | Msa0628670:intron | 40.0% | |
| GGATTAAATCCGAACTCCAT+AGG | + | chr4_3:9311222-9311241 | None:intergenic | 40.0% | |
| CTTCAATCAAGGACCAAAGT+AGG | + | chr4_3:9311401-9311420 | None:intergenic | 40.0% | |
| TGCATAGGTGGAGAAAATGT+TGG | + | chr4_3:9311641-9311660 | None:intergenic | 40.0% | |
| TTTCTCCACCTATGCATTTG+AGG | - | chr4_3:9311645-9311664 | Msa0628670:CDS | 40.0% | |
| ATCAACCTCAAATGCATAGG+TGG | + | chr4_3:9311653-9311672 | None:intergenic | 40.0% | |
| CAGATTGTGTCCCCTATTAT+TGG | + | chr4_3:9311886-9311905 | None:intergenic | 40.0% | |
| CAATAATAGGGGACACAATC+TGG | - | chr4_3:9311884-9311903 | Msa0628670:intron | 40.0% | |
| ACATCACCATCTCATCATCA+TGG | - | chr4_3:9312016-9312035 | Msa0628670:CDS | 40.0% | |
| !! | TTTTGTGGTTTGAGGTAAGG+GGG | + | chr4_3:9312133-9312152 | None:intergenic | 40.0% |
| ! | CAAAAGGGTATGCACAAATG+TGG | - | chr4_3:9312266-9312285 | Msa0628670:intron | 40.0% |
| ! | AAAGGGTATGCACAAATGTG+GGG | - | chr4_3:9312268-9312287 | Msa0628670:CDS | 40.0% |
| TCATAATCAGGTAGAGTCGA+AGG | + | chr4_3:9312310-9312329 | None:intergenic | 40.0% | |
| GCTGCAGCATACATCAATGA+TGG | + | chr4_3:9310721-9310740 | None:intergenic | 45.0% | |
| !! | GTTCTAAGGTCACGCAATTC+TGG | + | chr4_3:9310760-9310779 | None:intergenic | 45.0% |
| CTCTATAGAATGGGATGGGA+AGG | - | chr4_3:9311028-9311047 | Msa0628670:intron | 45.0% | |
| AAACAAATGCCTCGTTCGCT+TGG | + | chr4_3:9311160-9311179 | None:intergenic | 45.0% | |
| TAATAGGGGACACAATCTGG+TGG | - | chr4_3:9311887-9311906 | Msa0628670:intron | 45.0% | |
| AGGGGGTGGAATTAGCAAAA+AGG | + | chr4_3:9312116-9312135 | None:intergenic | 45.0% | |
| GCTCGTCTTAAAGCTTTCAC+TGG | - | chr4_3:9312340-9312359 | Msa0628670:five_prime_UTR | 45.0% | |
| !! | TATTGAAAAAAAAAATTATT+TGG | - | chr4_3:9310005-9310024 | Msa0628670:CDS | 5.0% |
| ! | GATACGTGTTGTGTCGGTGT+TGG | - | chr4_3:9310352-9310371 | Msa0628670:intron | 50.0% |
| GACTGAAGGGCTTCTGTTTG+AGG | - | chr4_3:9310466-9310485 | Msa0628670:intron | 50.0% | |
| TGAGCTTCTCACGAGTCCTA+TGG | - | chr4_3:9311203-9311222 | Msa0628670:CDS | 50.0% | |
| CTCACGAGTCCTATGGAGTT+CGG | - | chr4_3:9311210-9311229 | Msa0628670:CDS | 50.0% | |
| AGCTTCTTGCACGCCCTATT+TGG | + | chr4_3:9311307-9311326 | None:intergenic | 50.0% | |
| CGTGCAAGAAGCTCATATGG+TGG | - | chr4_3:9311314-9311333 | Msa0628670:intron | 50.0% | |
| ACACAATCTGGTGGAACTGG+AGG | - | chr4_3:9311896-9311915 | Msa0628670:intron | 50.0% | |
| CAAGACGCGGTTAGAGACGA+TGG | - | chr4_3:9310107-9310126 | Msa0628670:CDS | 55.0% | |
| GGGCGTGCAAGAAGCTCATA+TGG | - | chr4_3:9311311-9311330 | Msa0628670:intron | 55.0% | |
| GGGACACAATCTGGTGGAAC+TGG | - | chr4_3:9311893-9311912 | Msa0628670:intron | 55.0% | |
| CAATCTGGTGGAACTGGAGG+AGG | - | chr4_3:9311899-9311918 | Msa0628670:intron | 55.0% | |
| ! | TGTGGTTTGAGGTAAGGGGG+TGG | + | chr4_3:9312130-9312149 | None:intergenic | 55.0% |
| GGGTATGCACAAATGTGGGG+TGG | - | chr4_3:9312271-9312290 | Msa0628670:CDS | 55.0% | |
| CACAAATGTGGGGTGGTGCA+TGG | - | chr4_3:9312278-9312297 | Msa0628670:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9309712 | 9312496 | 9309712 | ID=Msa0628670;Name=Msa0628670 |
| chr4_3 | mRNA | 9309712 | 9312496 | 9309712 | ID=Msa0628670-mRNA-1;Parent=Msa0628670;Name=Msa0628670-mRNA-1;_AED=0.05;_eAED=0.05;_QI=179|1|1|1|0.8|0.66|6|124|349 |
| chr4_3 | exon | 9309712 | 9310315 | 9309712 | ID=Msa0628670-mRNA-1:exon:2818;Parent=Msa0628670-mRNA-1 |
| chr4_3 | exon | 9311117 | 9311254 | 9311117 | ID=Msa0628670-mRNA-1:exon:2817;Parent=Msa0628670-mRNA-1 |
| chr4_3 | exon | 9311377 | 9311521 | 9311377 | ID=Msa0628670-mRNA-1:exon:2816;Parent=Msa0628670-mRNA-1 |
| chr4_3 | exon | 9311638 | 9311741 | 9311638 | ID=Msa0628670-mRNA-1:exon:2815;Parent=Msa0628670-mRNA-1 |
| chr4_3 | exon | 9311990 | 9312122 | 9311990 | ID=Msa0628670-mRNA-1:exon:2814;Parent=Msa0628670-mRNA-1 |
| chr4_3 | exon | 9312268 | 9312496 | 9312268 | ID=Msa0628670-mRNA-1:exon:2813;Parent=Msa0628670-mRNA-1 |
| chr4_3 | five_prime_UTR | 9312318 | 9312496 | 9312318 | ID=Msa0628670-mRNA-1:five_prime_utr;Parent=Msa0628670-mRNA-1 |
| chr4_3 | CDS | 9312268 | 9312317 | 9312268 | ID=Msa0628670-mRNA-1:cds;Parent=Msa0628670-mRNA-1 |
| chr4_3 | CDS | 9311990 | 9312122 | 9311990 | ID=Msa0628670-mRNA-1:cds;Parent=Msa0628670-mRNA-1 |
| chr4_3 | CDS | 9311638 | 9311741 | 9311638 | ID=Msa0628670-mRNA-1:cds;Parent=Msa0628670-mRNA-1 |
| chr4_3 | CDS | 9311377 | 9311521 | 9311377 | ID=Msa0628670-mRNA-1:cds;Parent=Msa0628670-mRNA-1 |
| chr4_3 | CDS | 9311117 | 9311254 | 9311117 | ID=Msa0628670-mRNA-1:cds;Parent=Msa0628670-mRNA-1 |
| chr4_3 | CDS | 9309836 | 9310315 | 9309836 | ID=Msa0628670-mRNA-1:cds;Parent=Msa0628670-mRNA-1 |
| chr4_3 | three_prime_UTR | 9309712 | 9309835 | 9309712 | ID=Msa0628670-mRNA-1:three_prime_utr;Parent=Msa0628670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
