Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588390 | XP_039689013.1 | 92.000 | 350 | 24 | 2 | 1 | 349 | 1 | 347 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588390 | sp|Q54I39|IST1L_DICDI | 27.439 | 164 | 109 | 3 | 21 | 175 | 17 | 179 | 1.51e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0164400 | Msa0588390 | 0.805776 | 1.133622e-49 | -8.615850e-47 |
| Msa0194820 | Msa0588390 | 0.815190 | 1.049819e-51 | -8.615850e-47 |
| Msa0194840 | Msa0588390 | 0.812827 | 3.485100e-51 | -8.615850e-47 |
| Msa0531460 | Msa0588390 | 0.992330 | 1.202042e-192 | -8.615850e-47 |
| Msa0588390 | Msa0628670 | 0.841641 | 4.200549e-58 | -8.615850e-47 |
| Msa0588390 | Msa0666060 | 0.800031 | 1.743896e-48 | -8.615850e-47 |
| Msa0588390 | Msa0796160 | 0.809248 | 2.078426e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588390 | MtrunA17_Chr4g0004491 | 92.857 | 350 | 24 | 1 | 1 | 349 | 1 | 350 | 0.0 | 639 |
| Msa0588390 | MtrunA17_Chr2g0331801 | 50.329 | 304 | 134 | 6 | 4 | 297 | 1 | 297 | 6.40e-85 | 263 |
| Msa0588390 | MtrunA17_Chr8g0390551 | 48.705 | 193 | 97 | 2 | 4 | 195 | 1 | 192 | 1.26e-51 | 181 |
| Msa0588390 | MtrunA17_Chr6g0485461 | 42.035 | 226 | 121 | 2 | 4 | 228 | 57 | 273 | 3.45e-44 | 161 |
| Msa0588390 | MtrunA17_Chr8g0370931 | 36.126 | 191 | 111 | 4 | 15 | 194 | 29 | 219 | 6.40e-30 | 118 |
| Msa0588390 | MtrunA17_Chr1g0209771 | 31.156 | 199 | 126 | 4 | 13 | 200 | 13 | 211 | 3.99e-27 | 109 |
| Msa0588390 | MtrunA17_Chr6g0487991 | 32.973 | 185 | 111 | 4 | 4 | 178 | 1 | 182 | 7.69e-25 | 105 |
| Msa0588390 | MtrunA17_Chr2g0324121 | 33.333 | 174 | 106 | 3 | 4 | 167 | 1 | 174 | 2.87e-21 | 95.1 |
| Msa0588390 | MtrunA17_Chr6g0464791 | 32.447 | 188 | 116 | 4 | 15 | 191 | 15 | 202 | 6.49e-21 | 94.0 |
| Msa0588390 | MtrunA17_Chr4g0042021 | 30.726 | 179 | 112 | 3 | 4 | 173 | 1 | 176 | 6.36e-18 | 84.0 |
| Msa0588390 | MtrunA17_Chr7g0214961 | 26.286 | 175 | 117 | 3 | 8 | 171 | 3 | 176 | 3.95e-15 | 76.3 |
| Msa0588390 | MtrunA17_Chr1g0210081 | 24.074 | 162 | 112 | 3 | 21 | 171 | 22 | 183 | 1.31e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588390 | AT1G79910.1 | 40.876 | 274 | 160 | 2 | 4 | 276 | 1 | 273 | 2.72e-68 | 219 |
| Msa0588390 | AT1G52315.1 | 47.312 | 186 | 96 | 1 | 4 | 187 | 1 | 186 | 2.10e-53 | 179 |
| Msa0588390 | AT1G79910.3 | 37.963 | 216 | 132 | 2 | 62 | 276 | 4 | 218 | 1.27e-43 | 153 |
| Msa0588390 | AT1G79910.2 | 38.140 | 215 | 131 | 2 | 63 | 276 | 46 | 259 | 5.71e-43 | 152 |
| Msa0588390 | AT4G32350.1 | 41.935 | 186 | 107 | 1 | 4 | 188 | 1 | 186 | 6.33e-42 | 155 |
| Msa0588390 | AT4G32350.3 | 41.935 | 186 | 107 | 1 | 4 | 188 | 1 | 186 | 6.33e-42 | 155 |
| Msa0588390 | AT1G52315.2 | 50.000 | 120 | 58 | 1 | 70 | 187 | 17 | 136 | 5.50e-36 | 132 |
| Msa0588390 | AT4G35730.1 | 37.059 | 170 | 97 | 3 | 15 | 174 | 29 | 198 | 5.08e-28 | 114 |
| Msa0588390 | AT1G34220.2 | 33.673 | 196 | 119 | 4 | 15 | 199 | 15 | 210 | 3.61e-26 | 109 |
| Msa0588390 | AT1G25420.1 | 31.250 | 192 | 121 | 4 | 13 | 193 | 13 | 204 | 6.56e-24 | 100 |
| Msa0588390 | AT2G14830.1 | 33.333 | 186 | 114 | 3 | 4 | 179 | 1 | 186 | 2.38e-23 | 100 |
| Msa0588390 | AT4G32350.2 | 47.959 | 98 | 50 | 1 | 92 | 188 | 1 | 98 | 4.45e-23 | 100 |
| Msa0588390 | AT1G25420.4 | 31.638 | 177 | 110 | 4 | 28 | 193 | 1 | 177 | 3.01e-21 | 92.8 |
| Msa0588390 | AT1G34220.1 | 29.204 | 226 | 119 | 5 | 15 | 199 | 15 | 240 | 5.48e-21 | 94.7 |
| Msa0588390 | AT2G19710.1 | 29.255 | 188 | 120 | 4 | 1 | 178 | 1 | 185 | 1.35e-19 | 90.9 |
| Msa0588390 | AT4G29440.1 | 28.723 | 188 | 121 | 4 | 1 | 178 | 1 | 185 | 2.70e-19 | 89.7 |
| Msa0588390 | AT4G29440.2 | 31.013 | 158 | 98 | 4 | 31 | 178 | 1 | 157 | 5.02e-17 | 83.2 |
| Msa0588390 | AT1G25420.3 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 3.21e-16 | 77.8 |
| Msa0588390 | AT1G25420.2 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 3.21e-16 | 77.8 |
| Msa0588390 | AT1G13340.1 | 27.607 | 163 | 108 | 2 | 19 | 171 | 20 | 182 | 3.67e-16 | 79.3 |
Find 56 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCATTGAAAAGTTTAT+TGG | 0.167219 | 4_2:-10527125 | Msa0588390:CDS |
| CTGGAAGATCATAGAAAATT+AGG | 0.182221 | 4_2:-10525275 | Msa0588390:exon |
| ATGACATTGTTGAGCTTCTT+AGG | 0.233734 | 4_2:-10527468 | Msa0588390:CDS |
| AAAGATAAGAATAAGCATTT+AGG | 0.240134 | 4_2:+10527900 | None:intergenic |
| CTTATCTTCATTTCTCTTGT+AGG | 0.244844 | 4_2:+10526656 | None:intergenic |
| TTTACCTCTTTATTTATATA+TGG | 0.273867 | 4_2:+10526820 | None:intergenic |
| AGCCTAAGTTCTATTCAAAA+TGG | 0.300907 | 4_2:-10527715 | Msa0588390:intron |
| GTTCTAAGGTCACGCAATTC+TGG | 0.310148 | 4_2:+10526877 | None:intergenic |
| CATCATCACTACTACTATAT+TGG | 0.314596 | 4_2:+10525658 | None:intergenic |
| AAAGCTAGTTCAAGTTCATT+TGG | 0.341711 | 4_2:-10525591 | Msa0588390:CDS |
| TTTCTGTAAACAAAGTTCTA+AGG | 0.349616 | 4_2:+10526863 | None:intergenic |
| ATAGCTTCTTTGCATTCCTC+AGG | 0.361399 | 4_2:+10526940 | None:intergenic |
| CAATAATAGGGGACACAATC+TGG | 0.389420 | 4_2:-10525750 | Msa0588390:intron |
| TCATAATCAGGTAGAGTAGA+AGG | 0.391559 | 4_2:+10525327 | None:intergenic |
| GGGACACAATCTGGTGGAAC+TGG | 0.393720 | 4_2:-10525741 | Msa0588390:CDS |
| GACTGAAGGGCTTCTGTTTG+AGG | 0.394923 | 4_2:-10527168 | Msa0588390:CDS |
| ATTCTATGATACAAATGTTT+CGG | 0.401953 | 4_2:-10527748 | Msa0588390:exon |
| GCAATAAAATCATCATAATC+AGG | 0.413576 | 4_2:+10525315 | None:intergenic |
| CACAAGAGTTCTCTATAGAA+TGG | 0.414870 | 4_2:-10526616 | Msa0588390:CDS |
| TTACTTACTTCATATAATGA+TGG | 0.428302 | 4_2:+10526557 | None:intergenic |
| GATGTTTCCACTGATGTTGT+TGG | 0.439662 | 4_2:+10525396 | None:intergenic |
| ATGATTATGATGCATACAAA+AGG | 0.454117 | 4_2:-10527438 | Msa0588390:CDS |
| CTACAAGAGAAATGAAGATA+AGG | 0.485405 | 4_2:-10526655 | Msa0588390:CDS |
| TACTTACTTCATATAATGAT+GGG | 0.486277 | 4_2:+10526558 | None:intergenic |
| GCTCGTCTTAAAGCTTTCAC+TGG | 0.489333 | 4_2:-10525294 | Msa0588390:CDS |
| CTCTATAGAATGGGATGGGA+AGG | 0.509202 | 4_2:-10526606 | Msa0588390:CDS |
| CAATCTGGTGGAACTGGAGG+AGG | 0.518100 | 4_2:-10525735 | Msa0588390:CDS |
| ACAAGAGTTCTCTATAGAAT+GGG | 0.518976 | 4_2:-10526615 | Msa0588390:CDS |
| TTGCATTTGAAGCAGACTGA+AGG | 0.522662 | 4_2:-10527182 | Msa0588390:intron |
| TGAACCATATATAAATAAAG+AGG | 0.522792 | 4_2:-10526824 | Msa0588390:intron |
| AAAAGCGTATGCACAAATGT+GGG | 0.535251 | 4_2:-10525367 | Msa0588390:CDS |
| AATTAAGTAGATGCACCACT+AGG | 0.540525 | 4_2:+10525191 | None:intergenic |
| CAAAAGCGTATGCACAAATG+TGG | 0.540716 | 4_2:-10525368 | Msa0588390:CDS |
| TGCATTTGAAGCAGACTGAA+GGG | 0.541515 | 4_2:-10527181 | Msa0588390:intron |
| CACAAATGTGGGGTGGTGCA+TGG | 0.552893 | 4_2:-10525356 | Msa0588390:CDS |
| ATTGTTGAGCTTCTTAGGAG+TGG | 0.553106 | 4_2:-10527463 | Msa0588390:CDS |
| TAGCTTCTTTGCATTCCTCA+GGG | 0.557331 | 4_2:+10526941 | None:intergenic |
| TGATTATGATGCATACAAAA+GGG | 0.561869 | 4_2:-10527437 | Msa0588390:intron |
| GAGTTCTCTATAGAATGGGA+TGG | 0.565030 | 4_2:-10526611 | Msa0588390:CDS |
| GCTGCAGCATACATCAATGA+TGG | 0.570480 | 4_2:+10526916 | None:intergenic |
| CTATGATACAAATGTTTCGG+TGG | 0.572455 | 4_2:-10527745 | Msa0588390:CDS |
| TTTGTATCATAGAATATATG+AGG | 0.573235 | 4_2:+10527756 | None:intergenic |
| ACATCACCATCTCATCATCA+TGG | 0.573332 | 4_2:-10525618 | Msa0588390:CDS |
| TTTCTTCCATGATGATGAGA+TGG | 0.575256 | 4_2:+10525612 | None:intergenic |
| ACACAATCTGGTGGAACTGG+AGG | 0.583170 | 4_2:-10525738 | Msa0588390:CDS |
| TTGAAGAGTTAGTTAAGCAG+AGG | 0.591111 | 4_2:-10527085 | Msa0588390:intron |
| CAAGACGCGGTTAGAGACGA+TGG | 0.595738 | 4_2:-10527527 | Msa0588390:CDS |
| AGTTCTCTATAGAATGGGAT+GGG | 0.599718 | 4_2:-10526610 | Msa0588390:CDS |
| ATTAAGTAGATGCACCACTA+GGG | 0.618154 | 4_2:+10525192 | None:intergenic |
| AATGAAACCAACAACATCAG+TGG | 0.656362 | 4_2:-10525403 | Msa0588390:CDS |
| AAAGCGTATGCACAAATGTG+GGG | 0.677517 | 4_2:-10525366 | Msa0588390:CDS |
| TTAATTATTATACACCCTAG+TGG | 0.681350 | 4_2:-10525206 | Msa0588390:three_prime_UTR |
| ACATAAAATGTATCAAGACG+CGG | 0.698780 | 4_2:-10527540 | Msa0588390:CDS |
| TAATAGGGGACACAATCTGG+TGG | 0.702753 | 4_2:-10525747 | Msa0588390:intron |
| CTTATATAGTGAATGCCCTG+AGG | 0.705982 | 4_2:-10526956 | Msa0588390:intron |
| GCGTATGCACAAATGTGGGG+TGG | 0.730620 | 4_2:-10525363 | Msa0588390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTGAAAAAAAAATTATT+TGG | - | chr4_2:10525452-10525471 | Msa0588390:CDS | 10.0% |
| !! | AAAAATATGTTGAAATATTT+CGG | - | chr4_2:10526719-10526738 | Msa0588390:intron | 10.0% |
| !! | AGATTAACAAAATTATAAAA+TGG | - | chr4_2:10526890-10526909 | Msa0588390:CDS | 10.0% |
| !!! | GTTTATTCTAATTTATGTTT+TGG | - | chr4_2:10525480-10525499 | Msa0588390:CDS | 15.0% |
| !!! | TTTACCTCTTTATTTATATA+TGG | + | chr4_2:10526265-10526284 | None:intergenic | 15.0% |
| !!! | GAAATATTTCAACATATTTT+TGG | + | chr4_2:10526720-10526739 | None:intergenic | 15.0% |
| !! | TGATATTTGATTAATTTCAA+TGG | - | chr4_2:10527004-10527023 | Msa0588390:intron | 15.0% |
| !! | GATATTTGATTAATTTCAAT+GGG | - | chr4_2:10527005-10527024 | Msa0588390:intron | 15.0% |
| !! | AAAGATAAGAATAAGCATTT+AGG | + | chr4_2:10525185-10525204 | None:intergenic | 20.0% |
| !! | TTTGTATCATAGAATATATG+AGG | + | chr4_2:10525329-10525348 | None:intergenic | 20.0% |
| !! | ATTCTATGATACAAATGTTT+CGG | - | chr4_2:10525334-10525353 | Msa0588390:CDS | 20.0% |
| !!! | AAAATCACAATTTTAGTTAC+TGG | + | chr4_2:10525409-10525428 | None:intergenic | 20.0% |
| !! | TACTTGTAAGCAAAATTTAA+TGG | + | chr4_2:10525689-10525708 | None:intergenic | 20.0% |
| !! | CATGACAATAAATTAAACAT+TGG | - | chr4_2:10525734-10525753 | Msa0588390:CDS | 20.0% |
| !! | GAATTCATTGAAAAGTTTAT+TGG | - | chr4_2:10525957-10525976 | Msa0588390:intron | 20.0% |
| !! | ATTTAGTGCATATACATATA+AGG | + | chr4_2:10526032-10526051 | None:intergenic | 20.0% |
| !!! | ACTTTGTTTACAGAAAAATA+TGG | - | chr4_2:10526226-10526245 | Msa0588390:intron | 20.0% |
| !! | TGAACCATATATAAATAAAG+AGG | - | chr4_2:10526258-10526277 | Msa0588390:intron | 20.0% |
| !! | TACTTACTTCATATAATGAT+GGG | + | chr4_2:10526527-10526546 | None:intergenic | 20.0% |
| !! | TTACTTACTTCATATAATGA+TGG | + | chr4_2:10526528-10526547 | None:intergenic | 20.0% |
| !! | TATAAAATGGTTCATGAAAT+TGG | - | chr4_2:10526903-10526922 | Msa0588390:CDS | 20.0% |
| !! | CTTTATAGGACTAATATAAT+TGG | + | chr4_2:10526934-10526953 | None:intergenic | 20.0% |
| !! | GTATGTAAAAGAATCTTTAT+AGG | + | chr4_2:10526948-10526967 | None:intergenic | 20.0% |
| !! | TTTACATACTAATGTGATTA+TGG | - | chr4_2:10526959-10526978 | Msa0588390:intron | 20.0% |
| !! | TTACATACTAATGTGATTAT+GGG | - | chr4_2:10526960-10526979 | Msa0588390:intron | 20.0% |
| !!! | TGTTGGATATTTTAAAAGTT+GGG | + | chr4_2:10527072-10527091 | None:intergenic | 20.0% |
| !!! | ATGTTGGATATTTTAAAAGT+TGG | + | chr4_2:10527073-10527092 | None:intergenic | 20.0% |
| !!! | GAATCAATATTTTTCTCTAT+TGG | + | chr4_2:10527653-10527672 | None:intergenic | 20.0% |
| !!! | ACATTTCACTTTTAGTCAAT+AGG | - | chr4_2:10525299-10525318 | Msa0588390:CDS | 25.0% |
| !!! | CATTTCACTTTTAGTCAATA+GGG | - | chr4_2:10525300-10525319 | Msa0588390:CDS | 25.0% |
| !! | TACCATTTTGAATAGAACTT+AGG | + | chr4_2:10525372-10525391 | None:intergenic | 25.0% |
| !!! | TCTAATTTATGTTTTGGCTT+TGG | - | chr4_2:10525486-10525505 | Msa0588390:CDS | 25.0% |
| ! | ATGATTATGATGCATACAAA+AGG | - | chr4_2:10525644-10525663 | Msa0588390:CDS | 25.0% |
| ! | TGATTATGATGCATACAAAA+GGG | - | chr4_2:10525645-10525664 | Msa0588390:CDS | 25.0% |
| ! | TTTCTGTAAACAAAGTTCTA+AGG | + | chr4_2:10526222-10526241 | None:intergenic | 25.0% |
| !!! | TAGTCACAATGTTTTTTTGA+AGG | + | chr4_2:10526572-10526591 | None:intergenic | 25.0% |
| !!! | ATATTTTTGGATGTTTTACG+TGG | + | chr4_2:10526707-10526726 | None:intergenic | 25.0% |
| !!! | TTTTTTTGACTCTTCAATCA+AGG | + | chr4_2:10526860-10526879 | None:intergenic | 25.0% |
| !! | AGTTACCTTATTCACAATTT+TGG | - | chr4_2:10527043-10527062 | Msa0588390:intron | 25.0% |
| ! | AACAACTCATTTCTATGTTT+GGG | + | chr4_2:10527203-10527222 | None:intergenic | 25.0% |
| ! | TAACAACTCATTTCTATGTT+TGG | + | chr4_2:10527204-10527223 | None:intergenic | 25.0% |
| ! | TACATAAACTGACCAATAAT+AGG | - | chr4_2:10527319-10527338 | Msa0588390:intron | 25.0% |
| ! | ACATAAACTGACCAATAATA+GGG | - | chr4_2:10527320-10527339 | Msa0588390:intron | 25.0% |
| !!! | TTTTTTGTGGTTTGAAGTAA+GGG | + | chr4_2:10527583-10527602 | None:intergenic | 25.0% |
| !!! | CCTTTGTTATTAGTTTTTTG+TGG | + | chr4_2:10527596-10527615 | None:intergenic | 25.0% |
| ! | CCACAAAAAACTAATAACAA+AGG | - | chr4_2:10527593-10527612 | Msa0588390:intron | 25.0% |
| !!! | TTCAGAATCTGATGTTTTTT+TGG | + | chr4_2:10527630-10527649 | None:intergenic | 25.0% |
| !!! | GAGAAAAATATTGATTCATG+TGG | - | chr4_2:10527656-10527675 | Msa0588390:intron | 25.0% |
| ! | GCAATAAAATCATCATAATC+AGG | + | chr4_2:10527770-10527789 | None:intergenic | 25.0% |
| ! | TTAATTATTATACACCCTAG+TGG | - | chr4_2:10527876-10527895 | Msa0588390:five_prime_UTR | 25.0% |
| !! | GATGTTGTTGGATATTTTAG+AGG | + | chr4_2:10525271-10525290 | None:intergenic | 30.0% |
| ! | ATGTCTTTTCTTGATGTTGT+TGG | + | chr4_2:10525283-10525302 | None:intergenic | 30.0% |
| AGCCTAAGTTCTATTCAAAA+TGG | - | chr4_2:10525367-10525386 | Msa0588390:CDS | 30.0% | |
| ACATAAAATGTATCAAGACG+CGG | - | chr4_2:10525542-10525561 | Msa0588390:CDS | 30.0% | |
| ! | CTTTTCAATGAATTCATAGC+AGG | + | chr4_2:10525952-10525971 | None:intergenic | 30.0% |
| CTTATCTTCATTTCTCTTGT+AGG | + | chr4_2:10526429-10526448 | None:intergenic | 30.0% | |
| CTACAAGAGAAATGAAGATA+AGG | - | chr4_2:10526427-10526446 | Msa0588390:intron | 30.0% | |
| ACAAGAGTTCTCTATAGAAT+GGG | - | chr4_2:10526467-10526486 | Msa0588390:intron | 30.0% | |
| !!! | TCGGATTTTAGAATCCAAAT+AGG | - | chr4_2:10526738-10526757 | Msa0588390:intron | 30.0% |
| !!! | CGGATTTTAGAATCCAAATA+GGG | - | chr4_2:10526739-10526758 | Msa0588390:intron | 30.0% |
| ! | TCATATGGTGGAAAAAGTAA+TGG | - | chr4_2:10526774-10526793 | Msa0588390:intron | 30.0% |
| GGATACCAAAATTGTGAATA+AGG | + | chr4_2:10527051-10527070 | None:intergenic | 30.0% | |
| AAAATCAACCTCAAATGCAT+AGG | + | chr4_2:10527104-10527123 | None:intergenic | 30.0% | |
| CATAAACTGACCAATAATAG+GGG | - | chr4_2:10527321-10527340 | Msa0588390:intron | 30.0% | |
| CATCATCACTACTACTATAT+TGG | + | chr4_2:10527427-10527446 | None:intergenic | 30.0% | |
| ! | AAAGCTAGTTCAAGTTCATT+TGG | - | chr4_2:10527491-10527510 | Msa0588390:CDS | 30.0% |
| GGAATTAGCAAAAATGAACT+TGG | + | chr4_2:10527557-10527576 | None:intergenic | 30.0% | |
| !! | TTTTTGTGGTTTGAAGTAAG+GGG | + | chr4_2:10527582-10527601 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTGGTTTGAAGTA+AGG | + | chr4_2:10527584-10527603 | None:intergenic | 30.0% |
| CTGGAAGATCATAGAAAATT+AGG | - | chr4_2:10527807-10527826 | Msa0588390:five_prime_UTR | 30.0% | |
| !! | ATATTTTAGAGGCGATGTTG+TGG | + | chr4_2:10525260-10525279 | None:intergenic | 35.0% |
| CTATGATACAAATGTTTCGG+TGG | - | chr4_2:10525337-10525356 | Msa0588390:CDS | 35.0% | |
| ATGACATTGTTGAGCTTCTT+AGG | - | chr4_2:10525614-10525633 | Msa0588390:CDS | 35.0% | |
| TTGAAGAGTTAGTTAAGCAG+AGG | - | chr4_2:10525997-10526016 | Msa0588390:intron | 35.0% | |
| TTGAGTATACTCTACAAGAG+TGG | + | chr4_2:10526297-10526316 | None:intergenic | 35.0% | |
| CTCAACTTCTCAACAAACTA+AGG | + | chr4_2:10526399-10526418 | None:intergenic | 35.0% | |
| CACAAGAGTTCTCTATAGAA+TGG | - | chr4_2:10526466-10526485 | Msa0588390:intron | 35.0% | |
| AGTTCTCTATAGAATGGGAT+GGG | - | chr4_2:10526472-10526491 | Msa0588390:intron | 35.0% | |
| TATATATATCCAAGCGAACG+AGG | - | chr4_2:10526596-10526615 | Msa0588390:CDS | 35.0% | |
| ! | TACGTGGTTTTTATGCAGTT+CGG | + | chr4_2:10526691-10526710 | None:intergenic | 35.0% |
| ATTGAGTGATTCACCTACTT+TGG | - | chr4_2:10526833-10526852 | Msa0588390:CDS | 35.0% | |
| ! | GTGCTTTGTCTCATTTTGTT+TGG | + | chr4_2:10527405-10527424 | None:intergenic | 35.0% |
| ! | TTTCTTCCATGATGATGAGA+TGG | + | chr4_2:10527473-10527492 | None:intergenic | 35.0% |
| !! | TTTTGTGGTTTGAAGTAAGG+GGG | + | chr4_2:10527581-10527600 | None:intergenic | 35.0% |
| AATGAAACCAACAACATCAG+TGG | - | chr4_2:10527679-10527698 | Msa0588390:intron | 35.0% | |
| ! | AAAAGCGTATGCACAAATGT+GGG | - | chr4_2:10527715-10527734 | Msa0588390:intron | 35.0% |
| TCATAATCAGGTAGAGTAGA+AGG | + | chr4_2:10527758-10527777 | None:intergenic | 35.0% | |
| ATTAAGTAGATGCACCACTA+GGG | + | chr4_2:10527893-10527912 | None:intergenic | 35.0% | |
| AATTAAGTAGATGCACCACT+AGG | + | chr4_2:10527894-10527913 | None:intergenic | 35.0% | |
| ATTGTTGAGCTTCTTAGGAG+TGG | - | chr4_2:10525619-10525638 | Msa0588390:CDS | 40.0% | |
| ACATGTGATACGTGTTGTGT+CGG | - | chr4_2:10525794-10525813 | Msa0588390:intron | 40.0% | |
| ! | TTGCATTTGAAGCAGACTGA+AGG | - | chr4_2:10525900-10525919 | Msa0588390:intron | 40.0% |
| ! | TGCATTTGAAGCAGACTGAA+GGG | - | chr4_2:10525901-10525920 | Msa0588390:intron | 40.0% |
| CTTATATAGTGAATGCCCTG+AGG | - | chr4_2:10526126-10526145 | Msa0588390:intron | 40.0% | |
| TAGCTTCTTTGCATTCCTCA+GGG | + | chr4_2:10526144-10526163 | None:intergenic | 40.0% | |
| ATAGCTTCTTTGCATTCCTC+AGG | + | chr4_2:10526145-10526164 | None:intergenic | 40.0% | |
| ACTCTACAAGAGTGGATCAT+TGG | + | chr4_2:10526289-10526308 | None:intergenic | 40.0% | |
| GAGTTCTCTATAGAATGGGA+TGG | - | chr4_2:10526471-10526490 | Msa0588390:intron | 40.0% | |
| GGATTAAATCCGAACTCCAT+AGG | + | chr4_2:10526670-10526689 | None:intergenic | 40.0% | |
| CTTCAATCAAGGACCAAAGT+AGG | + | chr4_2:10526849-10526868 | None:intergenic | 40.0% | |
| TGCATAGGTGGAGAAAATGT+TGG | + | chr4_2:10527089-10527108 | None:intergenic | 40.0% | |
| TTTCTCCACCTATGCATTTG+AGG | - | chr4_2:10527093-10527112 | Msa0588390:CDS | 40.0% | |
| ATCAACCTCAAATGCATAGG+TGG | + | chr4_2:10527101-10527120 | None:intergenic | 40.0% | |
| CAGATTGTGTCCCCTATTAT+TGG | + | chr4_2:10527334-10527353 | None:intergenic | 40.0% | |
| CAATAATAGGGGACACAATC+TGG | - | chr4_2:10527332-10527351 | Msa0588390:intron | 40.0% | |
| ACATCACCATCTCATCATCA+TGG | - | chr4_2:10527464-10527483 | Msa0588390:CDS | 40.0% | |
| GATGTTTCCACTGATGTTGT+TGG | + | chr4_2:10527689-10527708 | None:intergenic | 40.0% | |
| ! | CAAAAGCGTATGCACAAATG+TGG | - | chr4_2:10527714-10527733 | Msa0588390:intron | 40.0% |
| AAAGCGTATGCACAAATGTG+GGG | - | chr4_2:10527716-10527735 | Msa0588390:CDS | 40.0% | |
| GCTGCAGCATACATCAATGA+TGG | + | chr4_2:10526169-10526188 | None:intergenic | 45.0% | |
| !! | GTTCTAAGGTCACGCAATTC+TGG | + | chr4_2:10526208-10526227 | None:intergenic | 45.0% |
| CTCTATAGAATGGGATGGGA+AGG | - | chr4_2:10526476-10526495 | Msa0588390:intron | 45.0% | |
| AAACAAATGCCTCGTTCGCT+TGG | + | chr4_2:10526608-10526627 | None:intergenic | 45.0% | |
| TAATAGGGGACACAATCTGG+TGG | - | chr4_2:10527335-10527354 | Msa0588390:intron | 45.0% | |
| GCTCGTCTTAAAGCTTTCAC+TGG | - | chr4_2:10527788-10527807 | Msa0588390:five_prime_UTR | 45.0% | |
| ! | GATACGTGTTGTGTCGGTGT+TGG | - | chr4_2:10525800-10525819 | Msa0588390:intron | 50.0% |
| GACTGAAGGGCTTCTGTTTG+AGG | - | chr4_2:10525914-10525933 | Msa0588390:intron | 50.0% | |
| TGAGCTTCTCACGAGTCCTA+TGG | - | chr4_2:10526651-10526670 | Msa0588390:CDS | 50.0% | |
| CTCACGAGTCCTATGGAGTT+CGG | - | chr4_2:10526658-10526677 | Msa0588390:CDS | 50.0% | |
| AGCTTCTTGCACGCCCTATT+TGG | + | chr4_2:10526755-10526774 | None:intergenic | 50.0% | |
| CGTGCAAGAAGCTCATATGG+TGG | - | chr4_2:10526762-10526781 | Msa0588390:intron | 50.0% | |
| ACACAATCTGGTGGAACTGG+AGG | - | chr4_2:10527344-10527363 | Msa0588390:intron | 50.0% | |
| ! | TGTGGTTTGAAGTAAGGGGG+TGG | + | chr4_2:10527578-10527597 | None:intergenic | 50.0% |
| CAAGACGCGGTTAGAGACGA+TGG | - | chr4_2:10525555-10525574 | Msa0588390:CDS | 55.0% | |
| GGGCGTGCAAGAAGCTCATA+TGG | - | chr4_2:10526759-10526778 | Msa0588390:intron | 55.0% | |
| GGGACACAATCTGGTGGAAC+TGG | - | chr4_2:10527341-10527360 | Msa0588390:intron | 55.0% | |
| CAATCTGGTGGAACTGGAGG+AGG | - | chr4_2:10527347-10527366 | Msa0588390:intron | 55.0% | |
| GCGTATGCACAAATGTGGGG+TGG | - | chr4_2:10527719-10527738 | Msa0588390:CDS | 55.0% | |
| CACAAATGTGGGGTGGTGCA+TGG | - | chr4_2:10527726-10527745 | Msa0588390:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 10525160 | 10527944 | 10525160 | ID=Msa0588390;Name=Msa0588390 |
| chr4_2 | mRNA | 10525160 | 10527944 | 10525160 | ID=Msa0588390-mRNA-1;Parent=Msa0588390;Name=Msa0588390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=179|1|1|1|0.8|0.66|6|124|349 |
| chr4_2 | exon | 10525160 | 10525763 | 10525160 | ID=Msa0588390-mRNA-1:exon:3003;Parent=Msa0588390-mRNA-1 |
| chr4_2 | exon | 10526565 | 10526702 | 10526565 | ID=Msa0588390-mRNA-1:exon:3002;Parent=Msa0588390-mRNA-1 |
| chr4_2 | exon | 10526825 | 10526969 | 10526825 | ID=Msa0588390-mRNA-1:exon:3001;Parent=Msa0588390-mRNA-1 |
| chr4_2 | exon | 10527086 | 10527189 | 10527086 | ID=Msa0588390-mRNA-1:exon:3000;Parent=Msa0588390-mRNA-1 |
| chr4_2 | exon | 10527438 | 10527570 | 10527438 | ID=Msa0588390-mRNA-1:exon:2999;Parent=Msa0588390-mRNA-1 |
| chr4_2 | exon | 10527716 | 10527944 | 10527716 | ID=Msa0588390-mRNA-1:exon:2998;Parent=Msa0588390-mRNA-1 |
| chr4_2 | five_prime_UTR | 10527766 | 10527944 | 10527766 | ID=Msa0588390-mRNA-1:five_prime_utr;Parent=Msa0588390-mRNA-1 |
| chr4_2 | CDS | 10527716 | 10527765 | 10527716 | ID=Msa0588390-mRNA-1:cds;Parent=Msa0588390-mRNA-1 |
| chr4_2 | CDS | 10527438 | 10527570 | 10527438 | ID=Msa0588390-mRNA-1:cds;Parent=Msa0588390-mRNA-1 |
| chr4_2 | CDS | 10527086 | 10527189 | 10527086 | ID=Msa0588390-mRNA-1:cds;Parent=Msa0588390-mRNA-1 |
| chr4_2 | CDS | 10526825 | 10526969 | 10526825 | ID=Msa0588390-mRNA-1:cds;Parent=Msa0588390-mRNA-1 |
| chr4_2 | CDS | 10526565 | 10526702 | 10526565 | ID=Msa0588390-mRNA-1:cds;Parent=Msa0588390-mRNA-1 |
| chr4_2 | CDS | 10525284 | 10525763 | 10525284 | ID=Msa0588390-mRNA-1:cds;Parent=Msa0588390-mRNA-1 |
| chr4_2 | three_prime_UTR | 10525160 | 10525283 | 10525160 | ID=Msa0588390-mRNA-1:three_prime_utr;Parent=Msa0588390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
