Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668520 | XP_013454869.1 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 1.23e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668520 | sp|O26373|Y273_METTH | 42.236 | 161 | 80 | 3 | 9 | 169 | 1 | 148 | 2.77e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668520 | A0A072UGX9 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 5.87e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630460 | Msa0668520 | 0.848617 | 5.469494e-60 | -8.615850e-47 |
| Msa0668520 | Msa0668760 | 0.904285 | 1.439720e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668520 | MtrunA17_Chr4g0007391 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 1.13e-118 | 332 |
| Msa0668520 | MtrunA17_Chr4g0007401 | 63.473 | 167 | 59 | 1 | 5 | 169 | 2 | 168 | 1.29e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668520 | AT5G01300.1 | 66.258 | 163 | 51 | 1 | 6 | 168 | 3 | 161 | 4.85e-76 | 224 |
| Msa0668520 | AT5G01300.3 | 65.957 | 141 | 44 | 1 | 6 | 146 | 3 | 139 | 8.88e-66 | 197 |
| Msa0668520 | AT5G01300.2 | 65.600 | 125 | 39 | 1 | 44 | 168 | 7 | 127 | 2.86e-55 | 171 |
Find 75 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGGTATAAGCGGACTTTC+TGG | 0.166026 | 4_4:-9488399 | None:intergenic |
| GAATATTCCTCCGACAATTA+AGG | 0.234000 | 4_4:+9488440 | Msa0668520:CDS |
| TTTCCTTCGTTTGCTATTGC+TGG | 0.274471 | 4_4:-9488246 | None:intergenic |
| TTCTCTCATTGGATTCAAAA+TGG | 0.287837 | 4_4:-9489194 | None:intergenic |
| TTCTTGTTTCTTTGTGATGA+TGG | 0.316611 | 4_4:-9488161 | None:intergenic |
| TGAACTTCATCTGGGTAATA+AGG | 0.317800 | 4_4:+9488620 | Msa0668520:CDS |
| CGCTTATACCGTGGACATGC+TGG | 0.322576 | 4_4:+9488409 | Msa0668520:CDS |
| ACCAGGTTGTTTCCAATCAT+TGG | 0.335662 | 4_4:-9488532 | None:intergenic |
| ACGGTATAAGCGGACTTTCT+GGG | 0.379458 | 4_4:-9488398 | None:intergenic |
| AAATGAAGCTCTTCTCTCAT+TGG | 0.381317 | 4_4:-9489205 | None:intergenic |
| AGACAAATCTATAGTGTAAA+GGG | 0.383710 | 4_4:-9489231 | None:intergenic |
| CTTGGATGATGAACTTCATC+TGG | 0.387313 | 4_4:+9488611 | Msa0668520:CDS |
| TCCTAGCACGTGCCCTTCCT+TGG | 0.387726 | 4_4:-9489072 | None:intergenic |
| AATATTCCTCCGACAATTAA+GGG | 0.395193 | 4_4:+9488441 | Msa0668520:CDS |
| GGATTGCCAGAGGGGTTCTC+TGG | 0.418544 | 4_4:+9488462 | Msa0668520:CDS |
| GTGCCCTTCCTTGGCCTCCA+AGG | 0.419875 | 4_4:-9489063 | None:intergenic |
| GGAGTTTAAGCTCTATGCCT+TGG | 0.440324 | 4_4:+9488593 | Msa0668520:CDS |
| GAGATGGGTGGTGAGTATGC+TGG | 0.451941 | 4_4:+9488495 | Msa0668520:CDS |
| TTAAAGAAGGGACCAATGAT+TGG | 0.453812 | 4_4:+9488520 | Msa0668520:CDS |
| GAATTAATTGCAGGTGACTA+AGG | 0.454093 | 4_4:+9489034 | Msa0668520:intron |
| CCTTCATCAGTGAATTGTCT+TGG | 0.460559 | 4_4:-9488273 | None:intergenic |
| GGTTGCCTACACATGGTCAT+AGG | 0.464896 | 4_4:+9488568 | Msa0668520:CDS |
| GGAGAAAACCTTGGAGGCCA+AGG | 0.472668 | 4_4:+9489055 | Msa0668520:CDS |
| AAAATCTCTTGCACTTGTTG+TGG | 0.474474 | 4_4:+9488356 | Msa0668520:CDS |
| AGATGGGTGGTGAGTATGCT+GGG | 0.474728 | 4_4:+9488496 | Msa0668520:CDS |
| AAGACAAATCTATAGTGTAA+AGG | 0.480409 | 4_4:-9489232 | None:intergenic |
| GCCAAGGAAGGGCACGTGCT+AGG | 0.486472 | 4_4:+9489071 | Msa0668520:CDS |
| CCAAGACAATTCACTGATGA+AGG | 0.503389 | 4_4:+9488273 | Msa0668520:CDS |
| GAGTATGCTGGGATTAAAGA+AGG | 0.506781 | 4_4:+9488507 | Msa0668520:CDS |
| ATAAGCGGACTTTCTGGGTC+GGG | 0.508077 | 4_4:-9488393 | None:intergenic |
| TCTGGCAATCCCTTAATTGT+CGG | 0.508991 | 4_4:-9488450 | None:intergenic |
| CTCTGGAAAAGAAGAGGAGA+TGG | 0.520511 | 4_4:+9488479 | Msa0668520:CDS |
| ATCTCTTGCACTTGTTGTGG+AGG | 0.520838 | 4_4:+9488359 | Msa0668520:CDS |
| CAGAAAGTCCGCTTATACCG+TGG | 0.527571 | 4_4:+9488400 | Msa0668520:CDS |
| ACATATCACCACCTTTAGAA+TGG | 0.530357 | 4_4:+9488313 | Msa0668520:CDS |
| GGTATGTTGTACCATTCTAA+AGG | 0.535703 | 4_4:-9488324 | None:intergenic |
| GACAATTAAGGGATTGCCAG+AGG | 0.539322 | 4_4:+9488452 | Msa0668520:CDS |
| GCTTATACCGTGGACATGCT+GGG | 0.546588 | 4_4:+9488410 | Msa0668520:CDS |
| AACCTGGTTGGCGTGGTCCG+AGG | 0.559829 | 4_4:+9488547 | Msa0668520:CDS |
| AAACAACAAATGGCTAGTGA+TGG | 0.563323 | 4_4:+9488198 | Msa0668520:exon |
| AACCTCGGACCACGCCAACC+AGG | 0.567436 | 4_4:-9488549 | None:intergenic |
| ACCGTGGACATGCTGGGTCG+TGG | 0.570804 | 4_4:+9488416 | Msa0668520:CDS |
| AAAACCTTGGAGGCCAAGGA+AGG | 0.577055 | 4_4:+9489059 | Msa0668520:CDS |
| TATAAGCGGACTTTCTGGGT+CGG | 0.580877 | 4_4:-9488394 | None:intergenic |
| ACAATTAAGGGATTGCCAGA+GGG | 0.581121 | 4_4:+9488453 | Msa0668520:CDS |
| GACTAAGGAGAAAACCTTGG+AGG | 0.585194 | 4_4:+9489049 | Msa0668520:CDS |
| GGGGTTCTCTGGAAAAGAAG+AGG | 0.588388 | 4_4:+9488473 | Msa0668520:CDS |
| GCCTACACATGGTCATAGGT+TGG | 0.588655 | 4_4:+9488572 | Msa0668520:CDS |
| CAGATGAAGTTCATCATCCA+AGG | 0.593869 | 4_4:-9488610 | None:intergenic |
| GGTCCGAGGTTGCCTACACA+TGG | 0.594491 | 4_4:+9488561 | Msa0668520:CDS |
| CAATTCACTGATGAAGGACA+AGG | 0.594727 | 4_4:+9488279 | Msa0668520:CDS |
| TTGTTTCTTTGTGATGATGG+TGG | 0.596105 | 4_4:-9488158 | None:intergenic |
| ATGATTGGAAACAACCTGGT+TGG | 0.600433 | 4_4:+9488535 | Msa0668520:CDS |
| CAATTAAGGGATTGCCAGAG+GGG | 0.608078 | 4_4:+9488454 | Msa0668520:CDS |
| GGTGACTAAGGAGAAAACCT+TGG | 0.608895 | 4_4:+9489046 | Msa0668520:intron |
| TGGAAGTGAAGTGTTCAAGT+TGG | 0.611451 | 4_4:+9488218 | Msa0668520:CDS |
| GGCAATCCCTTAATTGTCGG+AGG | 0.615009 | 4_4:-9488447 | None:intergenic |
| TGACCATGTGTAGGCAACCT+CGG | 0.615320 | 4_4:-9488564 | None:intergenic |
| ACCACGACCCAGCATGTCCA+CGG | 0.618296 | 4_4:-9488417 | None:intergenic |
| TCTGGAAAAGAAGAGGAGAT+GGG | 0.622144 | 4_4:+9488480 | Msa0668520:CDS |
| GAATGGTACAACATACCAGA+GGG | 0.623359 | 4_4:+9488330 | Msa0668520:CDS |
| CAGCATGTCCACGGTATAAG+CGG | 0.625674 | 4_4:-9488408 | None:intergenic |
| TTGGATGATGAACTTCATCT+GGG | 0.626681 | 4_4:+9488612 | Msa0668520:CDS |
| ACCAATGATTGGAAACAACC+TGG | 0.632983 | 4_4:+9488531 | Msa0668520:CDS |
| AAACCTTGGAGGCCAAGGAA+GGG | 0.635260 | 4_4:+9489060 | Msa0668520:CDS |
| TGGAAACAACCTGGTTGGCG+TGG | 0.635575 | 4_4:+9488540 | Msa0668520:CDS |
| AGTATGCTGGGATTAAAGAA+GGG | 0.646256 | 4_4:+9488508 | Msa0668520:CDS |
| ATTCACTGATGAAGGACAAG+GGG | 0.651029 | 4_4:+9488281 | Msa0668520:CDS |
| AATTCACTGATGAAGGACAA+GGG | 0.660644 | 4_4:+9488280 | Msa0668520:CDS |
| GGAAAAGAAGAGGAGATGGG+TGG | 0.673454 | 4_4:+9488483 | Msa0668520:CDS |
| TCACCAGCAATAGCAAACGA+AGG | 0.704482 | 4_4:+9488243 | Msa0668520:CDS |
| TCCAACCTATGACCATGTGT+AGG | 0.705834 | 4_4:-9488573 | None:intergenic |
| ATGTTGTACCATTCTAAAGG+TGG | 0.709353 | 4_4:-9488321 | None:intergenic |
| AGAATGGTACAACATACCAG+AGG | 0.724330 | 4_4:+9488329 | Msa0668520:CDS |
| AATGGTACAACATACCAGAG+GGG | 0.803842 | 4_4:+9488331 | Msa0668520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_4:9488767-9488786 | Msa0668520:intron | 10.0% |
| !! | TTTATCTATCAAAATTAATA+CGG | - | chr4_4:9488927-9488946 | None:intergenic | 10.0% |
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_4:9488767-9488786 | Msa0668520:intron | 10.0% |
| !! | TTTATCTATCAAAATTAATA+CGG | - | chr4_4:9488927-9488946 | None:intergenic | 10.0% |
| !! | TTATCTATCAAAATTAATAC+GGG | - | chr4_4:9488926-9488945 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_4:9489010-9489029 | Msa0668520:intron | 15.0% |
| !! | TTATCTATCAAAATTAATAC+GGG | - | chr4_4:9488926-9488945 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_4:9489010-9489029 | Msa0668520:intron | 15.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_4:9489298-9489317 | None:intergenic | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_4:9489298-9489317 | None:intergenic | 20.0% |
| ! | TAAACTAAACTCATTTGAGT+TGG | + | chr4_4:9488846-9488865 | Msa0668520:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_4:9489025-9489044 | Msa0668520:intron | 25.0% |
| ! | AGACAAATCTATAGTGTAAA+GGG | - | chr4_4:9489234-9489253 | None:intergenic | 25.0% |
| ! | AAGACAAATCTATAGTGTAA+AGG | - | chr4_4:9489235-9489254 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_4:9489296-9489315 | Msa0668520:three_prime_UTR | 25.0% |
| ! | TAAACTAAACTCATTTGAGT+TGG | + | chr4_4:9488846-9488865 | Msa0668520:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_4:9489025-9489044 | Msa0668520:intron | 25.0% |
| ! | AGACAAATCTATAGTGTAAA+GGG | - | chr4_4:9489234-9489253 | None:intergenic | 25.0% |
| ! | AAGACAAATCTATAGTGTAA+AGG | - | chr4_4:9489235-9489254 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_4:9489296-9489315 | Msa0668520:three_prime_UTR | 25.0% |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_4:9488164-9488183 | None:intergenic | 30.0% |
| CACTCAAGAAAAACAACAAA+TGG | + | chr4_4:9488188-9488207 | Msa0668520:exon | 30.0% | |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_4:9488441-9488460 | Msa0668520:CDS | 30.0% | |
| !! | TAAACTCATTTGAGTTGGTT+TGG | + | chr4_4:9488851-9488870 | Msa0668520:intron | 30.0% |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_4:9489197-9489216 | None:intergenic | 30.0% | |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_4:9488164-9488183 | None:intergenic | 30.0% |
| CACTCAAGAAAAACAACAAA+TGG | + | chr4_4:9488188-9488207 | Msa0668520:exon | 30.0% | |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_4:9488441-9488460 | Msa0668520:CDS | 30.0% | |
| !! | TAAACTCATTTGAGTTGGTT+TGG | + | chr4_4:9488851-9488870 | Msa0668520:intron | 30.0% |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_4:9489197-9489216 | None:intergenic | 30.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_4:9488161-9488180 | None:intergenic | 35.0% |
| AAACAACAAATGGCTAGTGA+TGG | + | chr4_4:9488198-9488217 | Msa0668520:exon | 35.0% | |
| AATTCACTGATGAAGGACAA+GGG | + | chr4_4:9488280-9488299 | Msa0668520:CDS | 35.0% | |
| ! | ACATATCACCACCTTTAGAA+TGG | + | chr4_4:9488313-9488332 | Msa0668520:CDS | 35.0% |
| ! | ATGTTGTACCATTCTAAAGG+TGG | - | chr4_4:9488324-9488343 | None:intergenic | 35.0% |
| GGTATGTTGTACCATTCTAA+AGG | - | chr4_4:9488327-9488346 | None:intergenic | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_4:9488356-9488375 | Msa0668520:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_4:9488440-9488459 | Msa0668520:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_4:9488508-9488527 | Msa0668520:CDS | 35.0% | |
| TTAAAGAAGGGACCAATGAT+TGG | + | chr4_4:9488520-9488539 | Msa0668520:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_4:9488612-9488631 | Msa0668520:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_4:9488620-9488639 | Msa0668520:CDS | 35.0% | |
| CACTTTCAAACAAGTTACTC+TGG | - | chr4_4:9488985-9489004 | None:intergenic | 35.0% | |
| !! | CAGAGTAACTTGTTTGAAAG+TGG | + | chr4_4:9488983-9489002 | Msa0668520:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_4:9489034-9489053 | Msa0668520:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_4:9489208-9489227 | None:intergenic | 35.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_4:9488161-9488180 | None:intergenic | 35.0% |
| AAACAACAAATGGCTAGTGA+TGG | + | chr4_4:9488198-9488217 | Msa0668520:exon | 35.0% | |
| AATTCACTGATGAAGGACAA+GGG | + | chr4_4:9488280-9488299 | Msa0668520:CDS | 35.0% | |
| ! | ACATATCACCACCTTTAGAA+TGG | + | chr4_4:9488313-9488332 | Msa0668520:CDS | 35.0% |
| ! | ATGTTGTACCATTCTAAAGG+TGG | - | chr4_4:9488324-9488343 | None:intergenic | 35.0% |
| GGTATGTTGTACCATTCTAA+AGG | - | chr4_4:9488327-9488346 | None:intergenic | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_4:9488356-9488375 | Msa0668520:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_4:9488440-9488459 | Msa0668520:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_4:9488508-9488527 | Msa0668520:CDS | 35.0% | |
| TTAAAGAAGGGACCAATGAT+TGG | + | chr4_4:9488520-9488539 | Msa0668520:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_4:9488612-9488631 | Msa0668520:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_4:9488620-9488639 | Msa0668520:CDS | 35.0% | |
| CACTTTCAAACAAGTTACTC+TGG | - | chr4_4:9488985-9489004 | None:intergenic | 35.0% | |
| !! | CAGAGTAACTTGTTTGAAAG+TGG | + | chr4_4:9488983-9489002 | Msa0668520:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_4:9489034-9489053 | Msa0668520:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_4:9489208-9489227 | None:intergenic | 35.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_4:9488218-9488237 | Msa0668520:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_4:9488249-9488268 | None:intergenic | 40.0% |
| CCTTCATCAGTGAATTGTCT+TGG | - | chr4_4:9488276-9488295 | None:intergenic | 40.0% | |
| CCAAGACAATTCACTGATGA+AGG | + | chr4_4:9488273-9488292 | Msa0668520:CDS | 40.0% | |
| CAATTCACTGATGAAGGACA+AGG | + | chr4_4:9488279-9488298 | Msa0668520:CDS | 40.0% | |
| ATTCACTGATGAAGGACAAG+GGG | + | chr4_4:9488281-9488300 | Msa0668520:CDS | 40.0% | |
| AGAATGGTACAACATACCAG+AGG | + | chr4_4:9488329-9488348 | Msa0668520:CDS | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_4:9488330-9488349 | Msa0668520:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_4:9488331-9488350 | Msa0668520:CDS | 40.0% | |
| TCTGGCAATCCCTTAATTGT+CGG | - | chr4_4:9488453-9488472 | None:intergenic | 40.0% | |
| ACAATTAAGGGATTGCCAGA+GGG | + | chr4_4:9488453-9488472 | Msa0668520:CDS | 40.0% | |
| TCTGGAAAAGAAGAGGAGAT+GGG | + | chr4_4:9488480-9488499 | Msa0668520:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_4:9488507-9488526 | Msa0668520:CDS | 40.0% | |
| ACCAATGATTGGAAACAACC+TGG | + | chr4_4:9488531-9488550 | Msa0668520:CDS | 40.0% | |
| ! | ACCAGGTTGTTTCCAATCAT+TGG | - | chr4_4:9488535-9488554 | None:intergenic | 40.0% |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_4:9488535-9488554 | Msa0668520:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_4:9488613-9488632 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_4:9488611-9488630 | Msa0668520:CDS | 40.0% | |
| !! | ACTCATTTGAGTTGGTTTGG+TGG | + | chr4_4:9488854-9488873 | Msa0668520:intron | 40.0% |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_4:9488218-9488237 | Msa0668520:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_4:9488249-9488268 | None:intergenic | 40.0% |
| CCTTCATCAGTGAATTGTCT+TGG | - | chr4_4:9488276-9488295 | None:intergenic | 40.0% | |
| CCAAGACAATTCACTGATGA+AGG | + | chr4_4:9488273-9488292 | Msa0668520:CDS | 40.0% | |
| CAATTCACTGATGAAGGACA+AGG | + | chr4_4:9488279-9488298 | Msa0668520:CDS | 40.0% | |
| ATTCACTGATGAAGGACAAG+GGG | + | chr4_4:9488281-9488300 | Msa0668520:CDS | 40.0% | |
| AGAATGGTACAACATACCAG+AGG | + | chr4_4:9488329-9488348 | Msa0668520:CDS | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_4:9488330-9488349 | Msa0668520:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_4:9488331-9488350 | Msa0668520:CDS | 40.0% | |
| TCTGGCAATCCCTTAATTGT+CGG | - | chr4_4:9488453-9488472 | None:intergenic | 40.0% | |
| ACAATTAAGGGATTGCCAGA+GGG | + | chr4_4:9488453-9488472 | Msa0668520:CDS | 40.0% | |
| TCTGGAAAAGAAGAGGAGAT+GGG | + | chr4_4:9488480-9488499 | Msa0668520:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_4:9488507-9488526 | Msa0668520:CDS | 40.0% | |
| ACCAATGATTGGAAACAACC+TGG | + | chr4_4:9488531-9488550 | Msa0668520:CDS | 40.0% | |
| ! | ACCAGGTTGTTTCCAATCAT+TGG | - | chr4_4:9488535-9488554 | None:intergenic | 40.0% |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_4:9488535-9488554 | Msa0668520:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_4:9488613-9488632 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_4:9488611-9488630 | Msa0668520:CDS | 40.0% | |
| !! | ACTCATTTGAGTTGGTTTGG+TGG | + | chr4_4:9488854-9488873 | Msa0668520:intron | 40.0% |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_4:9488243-9488262 | Msa0668520:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_4:9488359-9488378 | Msa0668520:CDS | 45.0% |
| ! | TATAAGCGGACTTTCTGGGT+CGG | - | chr4_4:9488397-9488416 | None:intergenic | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_4:9488401-9488420 | None:intergenic | 45.0% |
| GACAATTAAGGGATTGCCAG+AGG | + | chr4_4:9488452-9488471 | Msa0668520:CDS | 45.0% | |
| CAATTAAGGGATTGCCAGAG+GGG | + | chr4_4:9488454-9488473 | Msa0668520:CDS | 45.0% | |
| ! | CTCTGGAAAAGAAGAGGAGA+TGG | + | chr4_4:9488479-9488498 | Msa0668520:CDS | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_4:9488576-9488595 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_4:9488593-9488612 | Msa0668520:CDS | 45.0% | |
| GGTGACTAAGGAGAAAACCT+TGG | + | chr4_4:9489046-9489065 | Msa0668520:intron | 45.0% | |
| GACTAAGGAGAAAACCTTGG+AGG | + | chr4_4:9489049-9489068 | Msa0668520:CDS | 45.0% | |
| !! | GATGGTGGTGTGTGATTTTG+CGG | - | chr4_4:9488146-9488165 | None:intergenic | 45.0% |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_4:9488243-9488262 | Msa0668520:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_4:9488359-9488378 | Msa0668520:CDS | 45.0% |
| ! | TATAAGCGGACTTTCTGGGT+CGG | - | chr4_4:9488397-9488416 | None:intergenic | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_4:9488401-9488420 | None:intergenic | 45.0% |
| GACAATTAAGGGATTGCCAG+AGG | + | chr4_4:9488452-9488471 | Msa0668520:CDS | 45.0% | |
| CAATTAAGGGATTGCCAGAG+GGG | + | chr4_4:9488454-9488473 | Msa0668520:CDS | 45.0% | |
| ! | CTCTGGAAAAGAAGAGGAGA+TGG | + | chr4_4:9488479-9488498 | Msa0668520:CDS | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_4:9488576-9488595 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_4:9488593-9488612 | Msa0668520:CDS | 45.0% | |
| GGTGACTAAGGAGAAAACCT+TGG | + | chr4_4:9489046-9489065 | Msa0668520:intron | 45.0% | |
| GACTAAGGAGAAAACCTTGG+AGG | + | chr4_4:9489049-9489068 | Msa0668520:CDS | 45.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_4:9488348-9488367 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+GGG | - | chr4_4:9488396-9488415 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_4:9488402-9488421 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_4:9488400-9488419 | Msa0668520:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_4:9488411-9488430 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_4:9488410-9488429 | Msa0668520:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_4:9488450-9488469 | None:intergenic | 50.0% | |
| ! | TCTTTTCCAGAGAACCCCTC+TGG | - | chr4_4:9488471-9488490 | None:intergenic | 50.0% |
| ! | GGGGTTCTCTGGAAAAGAAG+AGG | + | chr4_4:9488473-9488492 | Msa0668520:CDS | 50.0% |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_4:9488483-9488502 | Msa0668520:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_4:9488496-9488515 | Msa0668520:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_4:9488567-9488586 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_4:9488568-9488587 | Msa0668520:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_4:9488572-9488591 | Msa0668520:CDS | 50.0% | |
| AAAACCTTGGAGGCCAAGGA+AGG | + | chr4_4:9489059-9489078 | Msa0668520:CDS | 50.0% | |
| AAACCTTGGAGGCCAAGGAA+GGG | + | chr4_4:9489060-9489079 | Msa0668520:CDS | 50.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_4:9488348-9488367 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+GGG | - | chr4_4:9488396-9488415 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_4:9488402-9488421 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_4:9488400-9488419 | Msa0668520:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_4:9488411-9488430 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_4:9488410-9488429 | Msa0668520:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_4:9488450-9488469 | None:intergenic | 50.0% | |
| ! | TCTTTTCCAGAGAACCCCTC+TGG | - | chr4_4:9488471-9488490 | None:intergenic | 50.0% |
| ! | GGGGTTCTCTGGAAAAGAAG+AGG | + | chr4_4:9488473-9488492 | Msa0668520:CDS | 50.0% |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_4:9488483-9488502 | Msa0668520:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_4:9488496-9488515 | Msa0668520:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_4:9488567-9488586 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_4:9488568-9488587 | Msa0668520:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_4:9488572-9488591 | Msa0668520:CDS | 50.0% | |
| AAAACCTTGGAGGCCAAGGA+AGG | + | chr4_4:9489059-9489078 | Msa0668520:CDS | 50.0% | |
| AAACCTTGGAGGCCAAGGAA+GGG | + | chr4_4:9489060-9489079 | Msa0668520:CDS | 50.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_4:9488409-9488428 | Msa0668520:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_4:9488495-9488514 | Msa0668520:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_4:9488540-9488559 | Msa0668520:CDS | 55.0% | |
| GGAGAAAACCTTGGAGGCCA+AGG | + | chr4_4:9489055-9489074 | Msa0668520:CDS | 55.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_4:9488409-9488428 | Msa0668520:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_4:9488495-9488514 | Msa0668520:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_4:9488540-9488559 | Msa0668520:CDS | 55.0% | |
| GGAGAAAACCTTGGAGGCCA+AGG | + | chr4_4:9489055-9489074 | Msa0668520:CDS | 55.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_4:9488420-9488439 | None:intergenic | 60.0% | |
| GGATTGCCAGAGGGGTTCTC+TGG | + | chr4_4:9488462-9488481 | Msa0668520:CDS | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_4:9488561-9488580 | Msa0668520:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_4:9489075-9489094 | None:intergenic | 60.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_4:9488420-9488439 | None:intergenic | 60.0% | |
| GGATTGCCAGAGGGGTTCTC+TGG | + | chr4_4:9488462-9488481 | Msa0668520:CDS | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_4:9488561-9488580 | Msa0668520:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_4:9489075-9489094 | None:intergenic | 60.0% | |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_4:9488416-9488435 | Msa0668520:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_4:9488547-9488566 | Msa0668520:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_4:9488552-9488571 | None:intergenic | 65.0% | |
| GTGCCCTTCCTTGGCCTCCA+AGG | - | chr4_4:9489066-9489085 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_4:9489071-9489090 | Msa0668520:CDS | 65.0% |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_4:9488416-9488435 | Msa0668520:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_4:9488547-9488566 | Msa0668520:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_4:9488552-9488571 | None:intergenic | 65.0% | |
| GTGCCCTTCCTTGGCCTCCA+AGG | - | chr4_4:9489066-9489085 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_4:9489071-9489090 | Msa0668520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 9488144 | 9489329 | 9488144 | ID=Msa0668520;Name=Msa0668520 |
| chr4_4 | mRNA | 9488144 | 9489329 | 9488144 | ID=Msa0668520-mRNA-1;Parent=Msa0668520;Name=Msa0668520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=63|1|1|1|1|1|2|208|169 |
| chr4_4 | exon | 9488144 | 9488641 | 9488144 | ID=Msa0668520-mRNA-1:exon:3011;Parent=Msa0668520-mRNA-1 |
| chr4_4 | exon | 9489047 | 9489329 | 9489047 | ID=Msa0668520-mRNA-1:exon:3012;Parent=Msa0668520-mRNA-1 |
| chr4_4 | five_prime_UTR | 9488144 | 9488206 | 9488144 | ID=Msa0668520-mRNA-1:five_prime_utr;Parent=Msa0668520-mRNA-1 |
| chr4_4 | CDS | 9488207 | 9488641 | 9488207 | ID=Msa0668520-mRNA-1:cds;Parent=Msa0668520-mRNA-1 |
| chr4_4 | CDS | 9489047 | 9489121 | 9489047 | ID=Msa0668520-mRNA-1:cds;Parent=Msa0668520-mRNA-1 |
| chr4_4 | three_prime_UTR | 9489122 | 9489329 | 9489122 | ID=Msa0668520-mRNA-1:three_prime_utr;Parent=Msa0668520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
