Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630460 | XP_013454869.1 | 95.266 | 169 | 8 | 0 | 1 | 169 | 1 | 169 | 4.68e-114 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630460 | sp|O26373|Y273_METTH | 42.236 | 161 | 80 | 3 | 9 | 169 | 1 | 148 | 2.92e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630460 | A0A072UGX9 | 95.266 | 169 | 8 | 0 | 1 | 169 | 1 | 169 | 2.24e-114 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630460 | Msa0668520 | 0.848617 | 5.469494e-60 | -8.615850e-47 |
| Msa0630460 | Msa0668760 | 0.897386 | 1.478532e-76 | -8.615850e-47 |
| Msa0534010 | Msa0630460 | 0.887194 | 1.767463e-72 | -8.615850e-47 |
| Msa0590020 | Msa0630460 | 0.866629 | 2.480238e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630460 | MtrunA17_Chr4g0007391 | 95.266 | 169 | 8 | 0 | 1 | 169 | 1 | 169 | 4.31e-118 | 330 |
| Msa0630460 | MtrunA17_Chr4g0007401 | 63.473 | 167 | 59 | 1 | 5 | 169 | 2 | 168 | 3.58e-71 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630460 | AT5G01300.1 | 65.644 | 163 | 52 | 1 | 6 | 168 | 3 | 161 | 2.43e-75 | 223 |
| Msa0630460 | AT5G01300.3 | 65.248 | 141 | 45 | 1 | 6 | 146 | 3 | 139 | 3.89e-65 | 196 |
| Msa0630460 | AT5G01300.2 | 64.800 | 125 | 40 | 1 | 44 | 168 | 7 | 127 | 1.31e-54 | 169 |
Find 76 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGGTATAAGCGGACTTTC+TGG | 0.166026 | 4_3:-12372071 | None:intergenic |
| CCTTGACAGATGTACCATTT+TGG | 0.178996 | 4_3:+12372899 | Msa0630460:three_prime_UTR |
| GAATATTCCTCCGACAATTA+AGG | 0.234000 | 4_3:+12372112 | Msa0630460:CDS |
| TTTCCTTCGTTTGCTATTGC+TGG | 0.274471 | 4_3:-12371918 | None:intergenic |
| TTCTTGTTTCTTTGTGATGA+TGG | 0.316611 | 4_3:-12371832 | None:intergenic |
| TGAACTTCATCTGGGTAATA+AGG | 0.317800 | 4_3:+12372292 | Msa0630460:CDS |
| CGCTTATACCGTGGACATGC+TGG | 0.322576 | 4_3:+12372081 | Msa0630460:CDS |
| ACCAGGTTGTTTCCAATCAT+TGG | 0.335662 | 4_3:-12372204 | None:intergenic |
| TTCTCTCATTGGATCCAAAA+TGG | 0.345383 | 4_3:-12372913 | None:intergenic |
| AGACAAATCTATAGTGTAAA+GGG | 0.383710 | 4_3:-12372950 | None:intergenic |
| AAATGAAGCTCTTCTCTCAT+TGG | 0.386287 | 4_3:-12372924 | None:intergenic |
| CTTGGATGATGAACTTCATC+TGG | 0.387313 | 4_3:+12372283 | Msa0630460:CDS |
| TCCTAGCACGTGCCCTTCCT+TGG | 0.387726 | 4_3:-12372792 | None:intergenic |
| TCCGACAATTAAGGGATTGC+CGG | 0.389648 | 4_3:+12372121 | Msa0630460:CDS |
| AATATTCCTCCGACAATTAA+GGG | 0.395193 | 4_3:+12372113 | Msa0630460:CDS |
| CTTTGCTCCTTGTCCTTCAT+CGG | 0.398400 | 4_3:-12371958 | None:intergenic |
| GTGCCCTTCCTTGGCCTCCA+AGG | 0.419875 | 4_3:-12372783 | None:intergenic |
| GGATTGCCGGAGGGGTTCTC+CGG | 0.431051 | 4_3:+12372134 | Msa0630460:CDS |
| ACGGTATAAGCGGACTTTCT+GGG | 0.437141 | 4_3:-12372070 | None:intergenic |
| GGAGTTTAAGCTCTATGCCT+TGG | 0.440324 | 4_3:+12372265 | Msa0630460:CDS |
| GAGATGGGTGGTGAGTATGC+TGG | 0.451941 | 4_3:+12372167 | Msa0630460:CDS |
| TTAAAGAAGGGACCAATGAT+TGG | 0.453812 | 4_3:+12372192 | Msa0630460:CDS |
| GAATTAATTGCAGGTGACTA+AGG | 0.454093 | 4_3:+12372754 | Msa0630460:intron |
| GGTTGCCTACACATGGTCAT+AGG | 0.464896 | 4_3:+12372240 | Msa0630460:CDS |
| CCTTCATCGGTGAATTGTCT+TGG | 0.471085 | 4_3:-12371945 | None:intergenic |
| GGAGAAAACCTTGGAGGCCA+AGG | 0.472668 | 4_3:+12372775 | Msa0630460:CDS |
| AAAATCTCTTGCACTTGTTG+TGG | 0.474474 | 4_3:+12372028 | Msa0630460:CDS |
| AGATGGGTGGTGAGTATGCT+GGG | 0.474728 | 4_3:+12372168 | Msa0630460:CDS |
| TCCGGCAATCCCTTAATTGT+CGG | 0.476702 | 4_3:-12372122 | None:intergenic |
| AAGACAAATCTATAGTGTAA+AGG | 0.480409 | 4_3:-12372951 | None:intergenic |
| CCAAGACAATTCACCGATGA+AGG | 0.486370 | 4_3:+12371945 | Msa0630460:CDS |
| GCCAAGGAAGGGCACGTGCT+AGG | 0.486472 | 4_3:+12372791 | Msa0630460:CDS |
| ATAAGCGGACTTTCTGGGTC+AGG | 0.498188 | 4_3:-12372065 | None:intergenic |
| GAGTATGCTGGGATTAAAGA+AGG | 0.506781 | 4_3:+12372179 | Msa0630460:CDS |
| ATCTCTTGCACTTGTTGTGG+AGG | 0.520838 | 4_3:+12372031 | Msa0630460:CDS |
| CAGAAAGTCCGCTTATACCG+TGG | 0.527571 | 4_3:+12372072 | Msa0630460:CDS |
| CTCCGGAAAAGAAGAGGAGA+TGG | 0.540842 | 4_3:+12372151 | Msa0630460:CDS |
| CAATTAAGGGATTGCCGGAG+GGG | 0.541055 | 4_3:+12372126 | Msa0630460:CDS |
| GCTTATACCGTGGACATGCT+GGG | 0.546588 | 4_3:+12372082 | Msa0630460:CDS |
| AACAACAATATGGCTAGTGA+TGG | 0.549492 | 4_3:+12371870 | Msa0630460:exon |
| ACATATCACCACCATTGGAA+TGG | 0.559482 | 4_3:+12371985 | Msa0630460:CDS |
| AACCTGGTTGGCGTGGTCCG+AGG | 0.559829 | 4_3:+12372219 | Msa0630460:CDS |
| AACCTCGGACCACGCCAACC+AGG | 0.567436 | 4_3:-12372221 | None:intergenic |
| ACCGTGGACATGCTGGGTCG+TGG | 0.570804 | 4_3:+12372088 | Msa0630460:CDS |
| AAAACCTTGGAGGCCAAGGA+AGG | 0.577055 | 4_3:+12372779 | Msa0630460:CDS |
| ACAATTAAGGGATTGCCGGA+GGG | 0.581121 | 4_3:+12372125 | Msa0630460:CDS |
| GACTAAGGAGAAAACCTTGG+AGG | 0.585194 | 4_3:+12372769 | Msa0630460:CDS |
| GCCTACACATGGTCATAGGT+TGG | 0.588655 | 4_3:+12372244 | Msa0630460:CDS |
| CAGATGAAGTTCATCATCCA+AGG | 0.593869 | 4_3:-12372282 | None:intergenic |
| GGTCCGAGGTTGCCTACACA+TGG | 0.594491 | 4_3:+12372233 | Msa0630460:CDS |
| TTGTTTCTTTGTGATGATGG+TGG | 0.596105 | 4_3:-12371829 | None:intergenic |
| ATGATTGGAAACAACCTGGT+TGG | 0.600433 | 4_3:+12372207 | Msa0630460:CDS |
| GACAATTAAGGGATTGCCGG+AGG | 0.600990 | 4_3:+12372124 | Msa0630460:CDS |
| GGGGTTCTCCGGAAAAGAAG+AGG | 0.603224 | 4_3:+12372145 | Msa0630460:CDS |
| GGTGACTAAGGAGAAAACCT+TGG | 0.608895 | 4_3:+12372766 | Msa0630460:intron |
| TGGAAGTGAAGTGTTCAAGT+TGG | 0.611451 | 4_3:+12371890 | Msa0630460:CDS |
| CAATTCACCGATGAAGGACA+AGG | 0.614163 | 4_3:+12371951 | Msa0630460:CDS |
| CCAAAATGGTACATCTGTCA+AGG | 0.614491 | 4_3:-12372899 | None:intergenic |
| TGACCATGTGTAGGCAACCT+CGG | 0.615320 | 4_3:-12372236 | None:intergenic |
| ACCACGACCCAGCATGTCCA+CGG | 0.618296 | 4_3:-12372089 | None:intergenic |
| CAGCATGTCCACGGTATAAG+CGG | 0.625674 | 4_3:-12372080 | None:intergenic |
| TTGGATGATGAACTTCATCT+GGG | 0.626681 | 4_3:+12372284 | Msa0630460:CDS |
| TCCGGAAAAGAAGAGGAGAT+GGG | 0.627075 | 4_3:+12372152 | Msa0630460:CDS |
| GGTATGTTGTACCATTCCAA+TGG | 0.628439 | 4_3:-12371996 | None:intergenic |
| GAATGGTACAACATACCAGA+GGG | 0.631694 | 4_3:+12372002 | Msa0630460:CDS |
| ACCAATGATTGGAAACAACC+TGG | 0.632983 | 4_3:+12372203 | Msa0630460:CDS |
| AAACCTTGGAGGCCAAGGAA+GGG | 0.635260 | 4_3:+12372780 | Msa0630460:CDS |
| TGGAAACAACCTGGTTGGCG+TGG | 0.635575 | 4_3:+12372212 | Msa0630460:CDS |
| GGCAATCCCTTAATTGTCGG+AGG | 0.637599 | 4_3:-12372119 | None:intergenic |
| AGTATGCTGGGATTAAAGAA+GGG | 0.646256 | 4_3:+12372180 | Msa0630460:CDS |
| ATGTTGTACCATTCCAATGG+TGG | 0.671854 | 4_3:-12371993 | None:intergenic |
| GGAAAAGAAGAGGAGATGGG+TGG | 0.683952 | 4_3:+12372155 | Msa0630460:CDS |
| TCACCAGCAATAGCAAACGA+AGG | 0.704482 | 4_3:+12371915 | Msa0630460:CDS |
| TCCAACCTATGACCATGTGT+AGG | 0.705834 | 4_3:-12372245 | None:intergenic |
| GGAATGGTACAACATACCAG+AGG | 0.732665 | 4_3:+12372001 | Msa0630460:CDS |
| AATGGTACAACATACCAGAG+GGG | 0.810028 | 4_3:+12372003 | Msa0630460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_3:12372447-12372466 | Msa0630460:intron | 10.0% |
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_3:12372447-12372466 | Msa0630460:intron | 10.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_3:12372730-12372749 | Msa0630460:intron | 15.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_3:12372730-12372749 | Msa0630460:intron | 15.0% |
| !! | TTTGTCTATCCAAATTAATA+CGG | - | chr4_3:12372602-12372621 | None:intergenic | 20.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_3:12372627-12372646 | Msa0630460:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_3:12373017-12373036 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_3:12373016-12373035 | Msa0630460:three_prime_UTR | 20.0% |
| !! | TTTGTCTATCCAAATTAATA+CGG | - | chr4_3:12372602-12372621 | None:intergenic | 20.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_3:12372627-12372646 | Msa0630460:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_3:12373017-12373036 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_3:12373016-12373035 | Msa0630460:three_prime_UTR | 20.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_3:12371860-12371879 | Msa0630460:exon | 25.0% |
| ! | TAAACTAAACCTATTTGAGT+TGG | + | chr4_3:12372526-12372545 | Msa0630460:intron | 25.0% |
| ! | AATTCTCTTCCGTATTAATT+TGG | + | chr4_3:12372590-12372609 | Msa0630460:intron | 25.0% |
| !!! | TAGATTAACTTGTTTGAAAG+TGG | + | chr4_3:12372702-12372721 | Msa0630460:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_3:12372745-12372764 | Msa0630460:intron | 25.0% |
| ! | AGACAAATCTATAGTGTAAA+GGG | - | chr4_3:12372953-12372972 | None:intergenic | 25.0% |
| ! | AAGACAAATCTATAGTGTAA+AGG | - | chr4_3:12372954-12372973 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_3:12373015-12373034 | Msa0630460:three_prime_UTR | 25.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_3:12371860-12371879 | Msa0630460:exon | 25.0% |
| ! | TAAACTAAACCTATTTGAGT+TGG | + | chr4_3:12372526-12372545 | Msa0630460:intron | 25.0% |
| ! | AATTCTCTTCCGTATTAATT+TGG | + | chr4_3:12372590-12372609 | Msa0630460:intron | 25.0% |
| !!! | TAGATTAACTTGTTTGAAAG+TGG | + | chr4_3:12372702-12372721 | Msa0630460:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_3:12372745-12372764 | Msa0630460:intron | 25.0% |
| ! | AGACAAATCTATAGTGTAAA+GGG | - | chr4_3:12372953-12372972 | None:intergenic | 25.0% |
| ! | AAGACAAATCTATAGTGTAA+AGG | - | chr4_3:12372954-12372973 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_3:12373015-12373034 | Msa0630460:three_prime_UTR | 25.0% |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_3:12371835-12371854 | None:intergenic | 30.0% |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_3:12372113-12372132 | Msa0630460:CDS | 30.0% | |
| !! | TAAACCTATTTGAGTTGGTT+TGG | + | chr4_3:12372531-12372550 | Msa0630460:intron | 30.0% |
| TAGTCTATACAAATTGACAC+CGG | - | chr4_3:12372649-12372668 | None:intergenic | 30.0% | |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_3:12371835-12371854 | None:intergenic | 30.0% |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_3:12372113-12372132 | Msa0630460:CDS | 30.0% | |
| !! | TAAACCTATTTGAGTTGGTT+TGG | + | chr4_3:12372531-12372550 | Msa0630460:intron | 30.0% |
| TAGTCTATACAAATTGACAC+CGG | - | chr4_3:12372649-12372668 | None:intergenic | 30.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_3:12371832-12371851 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_3:12371870-12371889 | Msa0630460:exon | 35.0% | |
| GAAAAACATATCACCACCAT+TGG | + | chr4_3:12371980-12371999 | Msa0630460:CDS | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_3:12372028-12372047 | Msa0630460:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_3:12372112-12372131 | Msa0630460:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_3:12372180-12372199 | Msa0630460:CDS | 35.0% | |
| TTAAAGAAGGGACCAATGAT+TGG | + | chr4_3:12372192-12372211 | Msa0630460:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_3:12372284-12372303 | Msa0630460:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_3:12372292-12372311 | Msa0630460:CDS | 35.0% | |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_3:12372754-12372773 | Msa0630460:intron | 35.0% | |
| TTCTCTCATTGGATCCAAAA+TGG | - | chr4_3:12372916-12372935 | None:intergenic | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_3:12372927-12372946 | None:intergenic | 35.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_3:12371832-12371851 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_3:12371870-12371889 | Msa0630460:exon | 35.0% | |
| GAAAAACATATCACCACCAT+TGG | + | chr4_3:12371980-12371999 | Msa0630460:CDS | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_3:12372028-12372047 | Msa0630460:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_3:12372112-12372131 | Msa0630460:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_3:12372180-12372199 | Msa0630460:CDS | 35.0% | |
| TTAAAGAAGGGACCAATGAT+TGG | + | chr4_3:12372192-12372211 | Msa0630460:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_3:12372284-12372303 | Msa0630460:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_3:12372292-12372311 | Msa0630460:CDS | 35.0% | |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_3:12372754-12372773 | Msa0630460:intron | 35.0% | |
| TTCTCTCATTGGATCCAAAA+TGG | - | chr4_3:12372916-12372935 | None:intergenic | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_3:12372927-12372946 | None:intergenic | 35.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_3:12371890-12371909 | Msa0630460:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_3:12371921-12371940 | None:intergenic | 40.0% |
| ACATATCACCACCATTGGAA+TGG | + | chr4_3:12371985-12372004 | Msa0630460:CDS | 40.0% | |
| ATGTTGTACCATTCCAATGG+TGG | - | chr4_3:12371996-12372015 | None:intergenic | 40.0% | |
| GGTATGTTGTACCATTCCAA+TGG | - | chr4_3:12371999-12372018 | None:intergenic | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_3:12372002-12372021 | Msa0630460:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_3:12372003-12372022 | Msa0630460:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_3:12372179-12372198 | Msa0630460:CDS | 40.0% | |
| ACCAATGATTGGAAACAACC+TGG | + | chr4_3:12372203-12372222 | Msa0630460:CDS | 40.0% | |
| ! | ACCAGGTTGTTTCCAATCAT+TGG | - | chr4_3:12372207-12372226 | None:intergenic | 40.0% |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_3:12372207-12372226 | Msa0630460:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_3:12372285-12372304 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_3:12372283-12372302 | Msa0630460:CDS | 40.0% | |
| !! | ACCTATTTGAGTTGGTTTGG+TGG | + | chr4_3:12372534-12372553 | Msa0630460:intron | 40.0% |
| ACCACCAAACCAACTCAAAT+AGG | - | chr4_3:12372538-12372557 | None:intergenic | 40.0% | |
| CCAAAATGGTACATCTGTCA+AGG | - | chr4_3:12372902-12372921 | None:intergenic | 40.0% | |
| ! | CCTTGACAGATGTACCATTT+TGG | + | chr4_3:12372899-12372918 | Msa0630460:three_prime_UTR | 40.0% |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_3:12371890-12371909 | Msa0630460:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_3:12371921-12371940 | None:intergenic | 40.0% |
| ACATATCACCACCATTGGAA+TGG | + | chr4_3:12371985-12372004 | Msa0630460:CDS | 40.0% | |
| ATGTTGTACCATTCCAATGG+TGG | - | chr4_3:12371996-12372015 | None:intergenic | 40.0% | |
| GGTATGTTGTACCATTCCAA+TGG | - | chr4_3:12371999-12372018 | None:intergenic | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_3:12372002-12372021 | Msa0630460:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_3:12372003-12372022 | Msa0630460:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_3:12372179-12372198 | Msa0630460:CDS | 40.0% | |
| ACCAATGATTGGAAACAACC+TGG | + | chr4_3:12372203-12372222 | Msa0630460:CDS | 40.0% | |
| ! | ACCAGGTTGTTTCCAATCAT+TGG | - | chr4_3:12372207-12372226 | None:intergenic | 40.0% |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_3:12372207-12372226 | Msa0630460:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_3:12372285-12372304 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_3:12372283-12372302 | Msa0630460:CDS | 40.0% | |
| !! | ACCTATTTGAGTTGGTTTGG+TGG | + | chr4_3:12372534-12372553 | Msa0630460:intron | 40.0% |
| ACCACCAAACCAACTCAAAT+AGG | - | chr4_3:12372538-12372557 | None:intergenic | 40.0% | |
| CCAAAATGGTACATCTGTCA+AGG | - | chr4_3:12372902-12372921 | None:intergenic | 40.0% | |
| ! | CCTTGACAGATGTACCATTT+TGG | + | chr4_3:12372899-12372918 | Msa0630460:three_prime_UTR | 40.0% |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_3:12371915-12371934 | Msa0630460:CDS | 45.0% | |
| CCTTCATCGGTGAATTGTCT+TGG | - | chr4_3:12371948-12371967 | None:intergenic | 45.0% | |
| CCAAGACAATTCACCGATGA+AGG | + | chr4_3:12371945-12371964 | Msa0630460:CDS | 45.0% | |
| CAATTCACCGATGAAGGACA+AGG | + | chr4_3:12371951-12371970 | Msa0630460:CDS | 45.0% | |
| CTTTGCTCCTTGTCCTTCAT+CGG | - | chr4_3:12371961-12371980 | None:intergenic | 45.0% | |
| GGAATGGTACAACATACCAG+AGG | + | chr4_3:12372001-12372020 | Msa0630460:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_3:12372031-12372050 | Msa0630460:CDS | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_3:12372073-12372092 | None:intergenic | 45.0% |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_3:12372121-12372140 | Msa0630460:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_3:12372125-12372144 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_3:12372125-12372144 | Msa0630460:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_3:12372152-12372171 | Msa0630460:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_3:12372156-12372175 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_3:12372248-12372267 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_3:12372265-12372284 | Msa0630460:CDS | 45.0% | |
| GGTGACTAAGGAGAAAACCT+TGG | + | chr4_3:12372766-12372785 | Msa0630460:intron | 45.0% | |
| GACTAAGGAGAAAACCTTGG+AGG | + | chr4_3:12372769-12372788 | Msa0630460:CDS | 45.0% | |
| !! | GATGGTGGTGTGTGATTTTG+CGG | - | chr4_3:12371817-12371836 | None:intergenic | 45.0% |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_3:12371915-12371934 | Msa0630460:CDS | 45.0% | |
| CCTTCATCGGTGAATTGTCT+TGG | - | chr4_3:12371948-12371967 | None:intergenic | 45.0% | |
| CCAAGACAATTCACCGATGA+AGG | + | chr4_3:12371945-12371964 | Msa0630460:CDS | 45.0% | |
| CAATTCACCGATGAAGGACA+AGG | + | chr4_3:12371951-12371970 | Msa0630460:CDS | 45.0% | |
| CTTTGCTCCTTGTCCTTCAT+CGG | - | chr4_3:12371961-12371980 | None:intergenic | 45.0% | |
| GGAATGGTACAACATACCAG+AGG | + | chr4_3:12372001-12372020 | Msa0630460:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_3:12372031-12372050 | Msa0630460:CDS | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_3:12372073-12372092 | None:intergenic | 45.0% |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_3:12372121-12372140 | Msa0630460:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_3:12372125-12372144 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_3:12372125-12372144 | Msa0630460:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_3:12372152-12372171 | Msa0630460:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_3:12372156-12372175 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_3:12372248-12372267 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_3:12372265-12372284 | Msa0630460:CDS | 45.0% | |
| GGTGACTAAGGAGAAAACCT+TGG | + | chr4_3:12372766-12372785 | Msa0630460:intron | 45.0% | |
| GACTAAGGAGAAAACCTTGG+AGG | + | chr4_3:12372769-12372788 | Msa0630460:CDS | 45.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_3:12372020-12372039 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+AGG | - | chr4_3:12372068-12372087 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_3:12372074-12372093 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_3:12372072-12372091 | Msa0630460:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_3:12372083-12372102 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_3:12372082-12372101 | Msa0630460:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_3:12372122-12372141 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_3:12372124-12372143 | Msa0630460:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_3:12372126-12372145 | Msa0630460:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_3:12372151-12372170 | Msa0630460:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_3:12372155-12372174 | Msa0630460:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_3:12372168-12372187 | Msa0630460:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_3:12372239-12372258 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_3:12372240-12372259 | Msa0630460:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_3:12372244-12372263 | Msa0630460:CDS | 50.0% | |
| AAAACCTTGGAGGCCAAGGA+AGG | + | chr4_3:12372779-12372798 | Msa0630460:CDS | 50.0% | |
| AAACCTTGGAGGCCAAGGAA+GGG | + | chr4_3:12372780-12372799 | Msa0630460:CDS | 50.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_3:12372020-12372039 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+AGG | - | chr4_3:12372068-12372087 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_3:12372074-12372093 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_3:12372072-12372091 | Msa0630460:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_3:12372083-12372102 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_3:12372082-12372101 | Msa0630460:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_3:12372122-12372141 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_3:12372124-12372143 | Msa0630460:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_3:12372126-12372145 | Msa0630460:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_3:12372151-12372170 | Msa0630460:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_3:12372155-12372174 | Msa0630460:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_3:12372168-12372187 | Msa0630460:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_3:12372239-12372258 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_3:12372240-12372259 | Msa0630460:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_3:12372244-12372263 | Msa0630460:CDS | 50.0% | |
| AAAACCTTGGAGGCCAAGGA+AGG | + | chr4_3:12372779-12372798 | Msa0630460:CDS | 50.0% | |
| AAACCTTGGAGGCCAAGGAA+GGG | + | chr4_3:12372780-12372799 | Msa0630460:CDS | 50.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_3:12372081-12372100 | Msa0630460:CDS | 55.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_3:12372143-12372162 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_3:12372145-12372164 | Msa0630460:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_3:12372167-12372186 | Msa0630460:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_3:12372212-12372231 | Msa0630460:CDS | 55.0% | |
| GGAGAAAACCTTGGAGGCCA+AGG | + | chr4_3:12372775-12372794 | Msa0630460:CDS | 55.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_3:12372081-12372100 | Msa0630460:CDS | 55.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_3:12372143-12372162 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_3:12372145-12372164 | Msa0630460:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_3:12372167-12372186 | Msa0630460:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_3:12372212-12372231 | Msa0630460:CDS | 55.0% | |
| GGAGAAAACCTTGGAGGCCA+AGG | + | chr4_3:12372775-12372794 | Msa0630460:CDS | 55.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_3:12372092-12372111 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_3:12372233-12372252 | Msa0630460:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_3:12372795-12372814 | None:intergenic | 60.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_3:12372092-12372111 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_3:12372233-12372252 | Msa0630460:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_3:12372795-12372814 | None:intergenic | 60.0% | |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_3:12372088-12372107 | Msa0630460:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_3:12372134-12372153 | Msa0630460:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_3:12372219-12372238 | Msa0630460:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_3:12372224-12372243 | None:intergenic | 65.0% | |
| GTGCCCTTCCTTGGCCTCCA+AGG | - | chr4_3:12372786-12372805 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_3:12372791-12372810 | Msa0630460:CDS | 65.0% |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_3:12372088-12372107 | Msa0630460:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_3:12372134-12372153 | Msa0630460:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_3:12372219-12372238 | Msa0630460:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_3:12372224-12372243 | None:intergenic | 65.0% | |
| GTGCCCTTCCTTGGCCTCCA+AGG | - | chr4_3:12372786-12372805 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_3:12372791-12372810 | Msa0630460:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 12371815 | 12373049 | 12371815 | ID=Msa0630460;Name=Msa0630460 |
| chr4_3 | mRNA | 12371815 | 12373049 | 12371815 | ID=Msa0630460-mRNA-1;Parent=Msa0630460;Name=Msa0630460-mRNA-1;_AED=0.18;_eAED=0.18;_QI=64|1|1|1|1|1|2|208|169 |
| chr4_3 | exon | 12371815 | 12372313 | 12371815 | ID=Msa0630460-mRNA-1:exon:3625;Parent=Msa0630460-mRNA-1 |
| chr4_3 | exon | 12372767 | 12373049 | 12372767 | ID=Msa0630460-mRNA-1:exon:3626;Parent=Msa0630460-mRNA-1 |
| chr4_3 | five_prime_UTR | 12371815 | 12371878 | 12371815 | ID=Msa0630460-mRNA-1:five_prime_utr;Parent=Msa0630460-mRNA-1 |
| chr4_3 | CDS | 12371879 | 12372313 | 12371879 | ID=Msa0630460-mRNA-1:cds;Parent=Msa0630460-mRNA-1 |
| chr4_3 | CDS | 12372767 | 12372841 | 12372767 | ID=Msa0630460-mRNA-1:cds;Parent=Msa0630460-mRNA-1 |
| chr4_3 | three_prime_UTR | 12372842 | 12373049 | 12372842 | ID=Msa0630460-mRNA-1:three_prime_utr;Parent=Msa0630460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
