Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668760 | XP_013454869.1 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 1.23e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668760 | sp|O26373|Y273_METTH | 42.236 | 161 | 80 | 3 | 9 | 169 | 1 | 148 | 2.77e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668760 | A0A072UGX9 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 5.87e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630460 | Msa0668760 | 0.897386 | 1.478532e-76 | -8.615850e-47 |
| Msa0668520 | Msa0668760 | 0.904285 | 1.439720e-79 | -8.615850e-47 |
| Msa0534010 | Msa0668760 | 0.820792 | 5.687879e-53 | -8.615850e-47 |
| Msa0590020 | Msa0668760 | 0.802569 | 5.271667e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668760 | MtrunA17_Chr4g0007391 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 1.13e-118 | 332 |
| Msa0668760 | MtrunA17_Chr4g0007401 | 63.473 | 167 | 59 | 1 | 5 | 169 | 2 | 168 | 1.29e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668760 | AT5G01300.1 | 66.258 | 163 | 51 | 1 | 6 | 168 | 3 | 161 | 4.85e-76 | 224 |
| Msa0668760 | AT5G01300.3 | 65.957 | 141 | 44 | 1 | 6 | 146 | 3 | 139 | 8.88e-66 | 197 |
| Msa0668760 | AT5G01300.2 | 65.600 | 125 | 39 | 1 | 44 | 168 | 7 | 127 | 2.86e-55 | 171 |
Find 74 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGGTATAAGTGGACTTTC+TGG | 0.179376 | 4_4:-9970335 | None:intergenic |
| GAATATTCCTCCGACAATTA+AGG | 0.234000 | 4_4:+9970376 | Msa0668760:CDS |
| TTTCCTTCGTTTGCTATTGC+TGG | 0.274471 | 4_4:-9970182 | None:intergenic |
| TTCTCTCATTGGATTCAAAA+TGG | 0.287837 | 4_4:-9971180 | None:intergenic |
| TTCTTGTTTCTTTGTGATGA+TGG | 0.316611 | 4_4:-9970096 | None:intergenic |
| TGAACTTCATCTGGGTAATA+AGG | 0.317800 | 4_4:+9970556 | Msa0668760:CDS |
| ACCAGGTTGTTTCCAATCAT+TGG | 0.335662 | 4_4:-9970468 | None:intergenic |
| AGACAAATCTATAGTGTAAT+GGG | 0.352706 | 4_4:-9971217 | None:intergenic |
| AAATGAAGCTCTTCTCTCAT+TGG | 0.381317 | 4_4:-9971191 | None:intergenic |
| CTTGGATGATGAACTTCATC+TGG | 0.387313 | 4_4:+9970547 | Msa0668760:CDS |
| TCCTAGCACGTGCCCTTCCT+TGG | 0.387726 | 4_4:-9971059 | None:intergenic |
| TCCGACAATTAAGGGATTGC+CGG | 0.389648 | 4_4:+9970385 | Msa0668760:CDS |
| AATATTCCTCCGACAATTAA+GGG | 0.395193 | 4_4:+9970377 | Msa0668760:CDS |
| CACTTATACCGTGGACATGC+TGG | 0.403537 | 4_4:+9970345 | Msa0668760:CDS |
| GTGCCCTTCCTTGGCCTCCA+AGG | 0.419875 | 4_4:-9971050 | None:intergenic |
| GGATTGCCGGAGGGGTTCTC+CGG | 0.431051 | 4_4:+9970398 | Msa0668760:CDS |
| GGAGTTTAAGCTCTATGCCT+TGG | 0.440324 | 4_4:+9970529 | Msa0668760:CDS |
| AAGACAAATCTATAGTGTAA+TGG | 0.447565 | 4_4:-9971218 | None:intergenic |
| GAGATGGGTGGTGAGTATGC+TGG | 0.451941 | 4_4:+9970431 | Msa0668760:CDS |
| TTAAAGAAGGGACCAATGAT+TGG | 0.453812 | 4_4:+9970456 | Msa0668760:CDS |
| GAATTAATTGCAGGTGACTA+AGG | 0.454093 | 4_4:+9971021 | Msa0668760:intron |
| CCTTCATCAGTGAATTGTCT+TGG | 0.460559 | 4_4:-9970209 | None:intergenic |
| ACGGTATAAGTGGACTTTCT+GGG | 0.463919 | 4_4:-9970334 | None:intergenic |
| GGTTGCCTACACATGGTCAT+AGG | 0.464896 | 4_4:+9970504 | Msa0668760:CDS |
| GGAGAAAACCTTGGAGGCCA+AGG | 0.472668 | 4_4:+9971042 | Msa0668760:CDS |
| AAAATCTCTTGCACTTGTTG+TGG | 0.474474 | 4_4:+9970292 | Msa0668760:CDS |
| AGATGGGTGGTGAGTATGCT+GGG | 0.474728 | 4_4:+9970432 | Msa0668760:CDS |
| TCCGGCAATCCCTTAATTGT+CGG | 0.476702 | 4_4:-9970386 | None:intergenic |
| ATAAGTGGACTTTCTGGGTC+AGG | 0.483052 | 4_4:-9970329 | None:intergenic |
| GCCAAGGAAGGGCACGTGCT+AGG | 0.486472 | 4_4:+9971058 | Msa0668760:CDS |
| GGTATGTTGTACCATTCTAA+TGG | 0.486632 | 4_4:-9970260 | None:intergenic |
| CCAAGACAATTCACTGATGA+AGG | 0.495054 | 4_4:+9970209 | Msa0668760:CDS |
| GAGTATGCTGGGATTAAAGA+AGG | 0.506781 | 4_4:+9970443 | Msa0668760:CDS |
| CAGCATGTCCACGGTATAAG+TGG | 0.519373 | 4_4:-9970344 | None:intergenic |
| ATCTCTTGCACTTGTTGTGG+AGG | 0.520838 | 4_4:+9970295 | Msa0668760:CDS |
| ACATATCACCACCATTAGAA+TGG | 0.530357 | 4_4:+9970249 | Msa0668760:CDS |
| CTCCGGAAAAGAAGAGGAGA+TGG | 0.540842 | 4_4:+9970415 | Msa0668760:CDS |
| CAATTAAGGGATTGCCGGAG+GGG | 0.541055 | 4_4:+9970390 | Msa0668760:CDS |
| ACTTATACCGTGGACATGCT+GGG | 0.542328 | 4_4:+9970346 | Msa0668760:CDS |
| AACAACAATATGGCTAGTGA+TGG | 0.549492 | 4_4:+9970134 | Msa0668760:exon |
| CAGAAAGTCCACTTATACCG+TGG | 0.550346 | 4_4:+9970336 | Msa0668760:CDS |
| AACCTGGTTGGCGTGGTCCG+AGG | 0.559829 | 4_4:+9970483 | Msa0668760:CDS |
| AACCTCGGACCACGCCAACC+AGG | 0.567436 | 4_4:-9970485 | None:intergenic |
| ACCGTGGACATGCTGGGTCG+TGG | 0.570804 | 4_4:+9970352 | Msa0668760:CDS |
| AAAACCTTGGAGGCCAAGGA+AGG | 0.577055 | 4_4:+9971046 | Msa0668760:CDS |
| ACAATTAAGGGATTGCCGGA+GGG | 0.581121 | 4_4:+9970389 | Msa0668760:CDS |
| GACTAAGGAGAAAACCTTGG+AGG | 0.585194 | 4_4:+9971036 | Msa0668760:CDS |
| GCCTACACATGGTCATAGGT+TGG | 0.588655 | 4_4:+9970508 | Msa0668760:CDS |
| CAGATGAAGTTCATCATCCA+AGG | 0.593869 | 4_4:-9970546 | None:intergenic |
| GGTCCGAGGTTGCCTACACA+TGG | 0.594491 | 4_4:+9970497 | Msa0668760:CDS |
| TTGTTTCTTTGTGATGATGG+TGG | 0.596105 | 4_4:-9970093 | None:intergenic |
| ATGATTGGAAACAACCTGGT+TGG | 0.600433 | 4_4:+9970471 | Msa0668760:CDS |
| GACAATTAAGGGATTGCCGG+AGG | 0.600990 | 4_4:+9970388 | Msa0668760:CDS |
| GGGGTTCTCCGGAAAAGAAG+AGG | 0.603224 | 4_4:+9970409 | Msa0668760:CDS |
| ATTAGAATGGTACAACATAC+CGG | 0.603438 | 4_4:+9970262 | Msa0668760:CDS |
| GGTGACTAAGGAGAAAACCT+TGG | 0.608895 | 4_4:+9971033 | Msa0668760:intron |
| TGGAAGTGAAGTGTTCAAGT+TGG | 0.611451 | 4_4:+9970154 | Msa0668760:CDS |
| TGACCATGTGTAGGCAACCT+CGG | 0.615320 | 4_4:-9970500 | None:intergenic |
| ACCACGACCCAGCATGTCCA+CGG | 0.618296 | 4_4:-9970353 | None:intergenic |
| TTGGATGATGAACTTCATCT+GGG | 0.626681 | 4_4:+9970548 | Msa0668760:CDS |
| TCCGGAAAAGAAGAGGAGAT+GGG | 0.627075 | 4_4:+9970416 | Msa0668760:CDS |
| ACCAATGATTGGAAACAACC+TGG | 0.632983 | 4_4:+9970467 | Msa0668760:CDS |
| CAATTCACTGATGAAGGACA+AGG | 0.634617 | 4_4:+9970215 | Msa0668760:CDS |
| AAACCTTGGAGGCCAAGGAA+GGG | 0.635260 | 4_4:+9971047 | Msa0668760:CDS |
| TGGAAACAACCTGGTTGGCG+TGG | 0.635575 | 4_4:+9970476 | Msa0668760:CDS |
| GGCAATCCCTTAATTGTCGG+AGG | 0.637599 | 4_4:-9970383 | None:intergenic |
| GAATGGTACAACATACCGGA+GGG | 0.639178 | 4_4:+9970266 | Msa0668760:CDS |
| AGTATGCTGGGATTAAAGAA+GGG | 0.646256 | 4_4:+9970444 | Msa0668760:CDS |
| GGAAAAGAAGAGGAGATGGG+TGG | 0.683952 | 4_4:+9970419 | Msa0668760:CDS |
| ATGTTGTACCATTCTAATGG+TGG | 0.686754 | 4_4:-9970257 | None:intergenic |
| TCACCAGCAATAGCAAACGA+AGG | 0.704482 | 4_4:+9970179 | Msa0668760:CDS |
| TCCAACCTATGACCATGTGT+AGG | 0.705834 | 4_4:-9970509 | None:intergenic |
| AGAATGGTACAACATACCGG+AGG | 0.714352 | 4_4:+9970265 | Msa0668760:CDS |
| AATGGTACAACATACCGGAG+GGG | 0.719887 | 4_4:+9970267 | Msa0668760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_4:9970709-9970728 | Msa0668760:intron | 10.0% |
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_4:9970709-9970728 | Msa0668760:intron | 10.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_4:9970997-9971016 | Msa0668760:intron | 15.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_4:9970997-9971016 | Msa0668760:intron | 15.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_4:9970897-9970916 | Msa0668760:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_4:9971284-9971303 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_4:9971283-9971302 | Msa0668760:three_prime_UTR | 20.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_4:9970897-9970916 | Msa0668760:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_4:9971284-9971303 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_4:9971283-9971302 | Msa0668760:three_prime_UTR | 20.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_4:9970124-9970143 | Msa0668760:exon | 25.0% |
| ! | TCGTCTATCCAAAATTAATA+CGG | - | chr4_4:9970871-9970890 | None:intergenic | 25.0% |
| ! | TAGTTTATACAAATTGACAC+CGG | - | chr4_4:9970919-9970938 | None:intergenic | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_4:9971012-9971031 | Msa0668760:intron | 25.0% |
| ! | AGACAAATCTATAGTGTAAT+GGG | - | chr4_4:9971220-9971239 | None:intergenic | 25.0% |
| ! | AAGACAAATCTATAGTGTAA+TGG | - | chr4_4:9971221-9971240 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_4:9971282-9971301 | Msa0668760:three_prime_UTR | 25.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_4:9970124-9970143 | Msa0668760:exon | 25.0% |
| ! | TCGTCTATCCAAAATTAATA+CGG | - | chr4_4:9970871-9970890 | None:intergenic | 25.0% |
| ! | TAGTTTATACAAATTGACAC+CGG | - | chr4_4:9970919-9970938 | None:intergenic | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_4:9971012-9971031 | Msa0668760:intron | 25.0% |
| ! | AGACAAATCTATAGTGTAAT+GGG | - | chr4_4:9971220-9971239 | None:intergenic | 25.0% |
| ! | AAGACAAATCTATAGTGTAA+TGG | - | chr4_4:9971221-9971240 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_4:9971282-9971301 | Msa0668760:three_prime_UTR | 25.0% |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_4:9970099-9970118 | None:intergenic | 30.0% |
| ATTAGAATGGTACAACATAC+CGG | + | chr4_4:9970262-9970281 | Msa0668760:CDS | 30.0% | |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_4:9970377-9970396 | Msa0668760:CDS | 30.0% | |
| TAAACTAAACCCATTTGAGT+TGG | + | chr4_4:9970788-9970807 | Msa0668760:intron | 30.0% | |
| ! | ATTCTCTCCCGTATTAATTT+TGG | + | chr4_4:9970860-9970879 | Msa0668760:intron | 30.0% |
| CGTCTATCCAAAATTAATAC+GGG | - | chr4_4:9970870-9970889 | None:intergenic | 30.0% | |
| !! | TAGAGTAACTTGTTTGAAAG+TGG | + | chr4_4:9970970-9970989 | Msa0668760:intron | 30.0% |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_4:9971183-9971202 | None:intergenic | 30.0% | |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_4:9970099-9970118 | None:intergenic | 30.0% |
| ATTAGAATGGTACAACATAC+CGG | + | chr4_4:9970262-9970281 | Msa0668760:CDS | 30.0% | |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_4:9970377-9970396 | Msa0668760:CDS | 30.0% | |
| TAAACTAAACCCATTTGAGT+TGG | + | chr4_4:9970788-9970807 | Msa0668760:intron | 30.0% | |
| ! | ATTCTCTCCCGTATTAATTT+TGG | + | chr4_4:9970860-9970879 | Msa0668760:intron | 30.0% |
| CGTCTATCCAAAATTAATAC+GGG | - | chr4_4:9970870-9970889 | None:intergenic | 30.0% | |
| !! | TAGAGTAACTTGTTTGAAAG+TGG | + | chr4_4:9970970-9970989 | Msa0668760:intron | 30.0% |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_4:9971183-9971202 | None:intergenic | 30.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_4:9970096-9970115 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_4:9970134-9970153 | Msa0668760:exon | 35.0% | |
| ACATATCACCACCATTAGAA+TGG | + | chr4_4:9970249-9970268 | Msa0668760:CDS | 35.0% | |
| ATGTTGTACCATTCTAATGG+TGG | - | chr4_4:9970260-9970279 | None:intergenic | 35.0% | |
| GGTATGTTGTACCATTCTAA+TGG | - | chr4_4:9970263-9970282 | None:intergenic | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_4:9970292-9970311 | Msa0668760:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_4:9970376-9970395 | Msa0668760:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_4:9970444-9970463 | Msa0668760:CDS | 35.0% | |
| TTAAAGAAGGGACCAATGAT+TGG | + | chr4_4:9970456-9970475 | Msa0668760:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_4:9970548-9970567 | Msa0668760:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_4:9970556-9970575 | Msa0668760:CDS | 35.0% | |
| !! | TAAACCCATTTGAGTTGGTT+TGG | + | chr4_4:9970793-9970812 | Msa0668760:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_4:9971021-9971040 | Msa0668760:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_4:9971194-9971213 | None:intergenic | 35.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_4:9970096-9970115 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_4:9970134-9970153 | Msa0668760:exon | 35.0% | |
| ACATATCACCACCATTAGAA+TGG | + | chr4_4:9970249-9970268 | Msa0668760:CDS | 35.0% | |
| ATGTTGTACCATTCTAATGG+TGG | - | chr4_4:9970260-9970279 | None:intergenic | 35.0% | |
| GGTATGTTGTACCATTCTAA+TGG | - | chr4_4:9970263-9970282 | None:intergenic | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_4:9970292-9970311 | Msa0668760:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_4:9970376-9970395 | Msa0668760:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_4:9970444-9970463 | Msa0668760:CDS | 35.0% | |
| TTAAAGAAGGGACCAATGAT+TGG | + | chr4_4:9970456-9970475 | Msa0668760:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_4:9970548-9970567 | Msa0668760:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_4:9970556-9970575 | Msa0668760:CDS | 35.0% | |
| !! | TAAACCCATTTGAGTTGGTT+TGG | + | chr4_4:9970793-9970812 | Msa0668760:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_4:9971021-9971040 | Msa0668760:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_4:9971194-9971213 | None:intergenic | 35.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_4:9970154-9970173 | Msa0668760:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_4:9970185-9970204 | None:intergenic | 40.0% |
| CCTTCATCAGTGAATTGTCT+TGG | - | chr4_4:9970212-9970231 | None:intergenic | 40.0% | |
| CCAAGACAATTCACTGATGA+AGG | + | chr4_4:9970209-9970228 | Msa0668760:CDS | 40.0% | |
| CAATTCACTGATGAAGGACA+AGG | + | chr4_4:9970215-9970234 | Msa0668760:CDS | 40.0% | |
| ! | ACGGTATAAGTGGACTTTCT+GGG | - | chr4_4:9970337-9970356 | None:intergenic | 40.0% |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_4:9970443-9970462 | Msa0668760:CDS | 40.0% | |
| ACCAATGATTGGAAACAACC+TGG | + | chr4_4:9970467-9970486 | Msa0668760:CDS | 40.0% | |
| ! | ACCAGGTTGTTTCCAATCAT+TGG | - | chr4_4:9970471-9970490 | None:intergenic | 40.0% |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_4:9970471-9970490 | Msa0668760:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_4:9970549-9970568 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_4:9970547-9970566 | Msa0668760:CDS | 40.0% | |
| ACCACCAAACCAACTCAAAT+GGG | - | chr4_4:9970800-9970819 | None:intergenic | 40.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_4:9970154-9970173 | Msa0668760:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_4:9970185-9970204 | None:intergenic | 40.0% |
| CCTTCATCAGTGAATTGTCT+TGG | - | chr4_4:9970212-9970231 | None:intergenic | 40.0% | |
| CCAAGACAATTCACTGATGA+AGG | + | chr4_4:9970209-9970228 | Msa0668760:CDS | 40.0% | |
| CAATTCACTGATGAAGGACA+AGG | + | chr4_4:9970215-9970234 | Msa0668760:CDS | 40.0% | |
| ! | ACGGTATAAGTGGACTTTCT+GGG | - | chr4_4:9970337-9970356 | None:intergenic | 40.0% |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_4:9970443-9970462 | Msa0668760:CDS | 40.0% | |
| ACCAATGATTGGAAACAACC+TGG | + | chr4_4:9970467-9970486 | Msa0668760:CDS | 40.0% | |
| ! | ACCAGGTTGTTTCCAATCAT+TGG | - | chr4_4:9970471-9970490 | None:intergenic | 40.0% |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_4:9970471-9970490 | Msa0668760:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_4:9970549-9970568 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_4:9970547-9970566 | Msa0668760:CDS | 40.0% | |
| ACCACCAAACCAACTCAAAT+GGG | - | chr4_4:9970800-9970819 | None:intergenic | 40.0% | |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_4:9970179-9970198 | Msa0668760:CDS | 45.0% | |
| AGAATGGTACAACATACCGG+AGG | + | chr4_4:9970265-9970284 | Msa0668760:CDS | 45.0% | |
| GAATGGTACAACATACCGGA+GGG | + | chr4_4:9970266-9970285 | Msa0668760:CDS | 45.0% | |
| AATGGTACAACATACCGGAG+GGG | + | chr4_4:9970267-9970286 | Msa0668760:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_4:9970295-9970314 | Msa0668760:CDS | 45.0% |
| ! | ATAAGTGGACTTTCTGGGTC+AGG | - | chr4_4:9970332-9970351 | None:intergenic | 45.0% |
| ! | CACGGTATAAGTGGACTTTC+TGG | - | chr4_4:9970338-9970357 | None:intergenic | 45.0% |
| CAGAAAGTCCACTTATACCG+TGG | + | chr4_4:9970336-9970355 | Msa0668760:CDS | 45.0% | |
| ACTTATACCGTGGACATGCT+GGG | + | chr4_4:9970346-9970365 | Msa0668760:CDS | 45.0% | |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_4:9970385-9970404 | Msa0668760:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_4:9970389-9970408 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_4:9970389-9970408 | Msa0668760:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_4:9970416-9970435 | Msa0668760:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_4:9970420-9970439 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_4:9970512-9970531 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_4:9970529-9970548 | Msa0668760:CDS | 45.0% | |
| !! | ACCCATTTGAGTTGGTTTGG+TGG | + | chr4_4:9970796-9970815 | Msa0668760:intron | 45.0% |
| CACCACCAAACCAACTCAAA+TGG | - | chr4_4:9970801-9970820 | None:intergenic | 45.0% | |
| GGTGACTAAGGAGAAAACCT+TGG | + | chr4_4:9971033-9971052 | Msa0668760:intron | 45.0% | |
| GACTAAGGAGAAAACCTTGG+AGG | + | chr4_4:9971036-9971055 | Msa0668760:CDS | 45.0% | |
| !! | GATGGTGGTGTGTGATTTTG+CGG | - | chr4_4:9970081-9970100 | None:intergenic | 45.0% |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_4:9970179-9970198 | Msa0668760:CDS | 45.0% | |
| AGAATGGTACAACATACCGG+AGG | + | chr4_4:9970265-9970284 | Msa0668760:CDS | 45.0% | |
| GAATGGTACAACATACCGGA+GGG | + | chr4_4:9970266-9970285 | Msa0668760:CDS | 45.0% | |
| AATGGTACAACATACCGGAG+GGG | + | chr4_4:9970267-9970286 | Msa0668760:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_4:9970295-9970314 | Msa0668760:CDS | 45.0% |
| ! | ATAAGTGGACTTTCTGGGTC+AGG | - | chr4_4:9970332-9970351 | None:intergenic | 45.0% |
| ! | CACGGTATAAGTGGACTTTC+TGG | - | chr4_4:9970338-9970357 | None:intergenic | 45.0% |
| CAGAAAGTCCACTTATACCG+TGG | + | chr4_4:9970336-9970355 | Msa0668760:CDS | 45.0% | |
| ACTTATACCGTGGACATGCT+GGG | + | chr4_4:9970346-9970365 | Msa0668760:CDS | 45.0% | |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_4:9970385-9970404 | Msa0668760:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_4:9970389-9970408 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_4:9970389-9970408 | Msa0668760:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_4:9970416-9970435 | Msa0668760:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_4:9970420-9970439 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_4:9970512-9970531 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_4:9970529-9970548 | Msa0668760:CDS | 45.0% | |
| !! | ACCCATTTGAGTTGGTTTGG+TGG | + | chr4_4:9970796-9970815 | Msa0668760:intron | 45.0% |
| CACCACCAAACCAACTCAAA+TGG | - | chr4_4:9970801-9970820 | None:intergenic | 45.0% | |
| GGTGACTAAGGAGAAAACCT+TGG | + | chr4_4:9971033-9971052 | Msa0668760:intron | 45.0% | |
| GACTAAGGAGAAAACCTTGG+AGG | + | chr4_4:9971036-9971055 | Msa0668760:CDS | 45.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+CGG | - | chr4_4:9970284-9970303 | None:intergenic | 50.0% |
| CAGCATGTCCACGGTATAAG+TGG | - | chr4_4:9970347-9970366 | None:intergenic | 50.0% | |
| CACTTATACCGTGGACATGC+TGG | + | chr4_4:9970345-9970364 | Msa0668760:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_4:9970386-9970405 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_4:9970388-9970407 | Msa0668760:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_4:9970390-9970409 | Msa0668760:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_4:9970415-9970434 | Msa0668760:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_4:9970419-9970438 | Msa0668760:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_4:9970432-9970451 | Msa0668760:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_4:9970503-9970522 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_4:9970504-9970523 | Msa0668760:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_4:9970508-9970527 | Msa0668760:CDS | 50.0% | |
| AAAACCTTGGAGGCCAAGGA+AGG | + | chr4_4:9971046-9971065 | Msa0668760:CDS | 50.0% | |
| AAACCTTGGAGGCCAAGGAA+GGG | + | chr4_4:9971047-9971066 | Msa0668760:CDS | 50.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+CGG | - | chr4_4:9970284-9970303 | None:intergenic | 50.0% |
| CAGCATGTCCACGGTATAAG+TGG | - | chr4_4:9970347-9970366 | None:intergenic | 50.0% | |
| CACTTATACCGTGGACATGC+TGG | + | chr4_4:9970345-9970364 | Msa0668760:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_4:9970386-9970405 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_4:9970388-9970407 | Msa0668760:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_4:9970390-9970409 | Msa0668760:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_4:9970415-9970434 | Msa0668760:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_4:9970419-9970438 | Msa0668760:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_4:9970432-9970451 | Msa0668760:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_4:9970503-9970522 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_4:9970504-9970523 | Msa0668760:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_4:9970508-9970527 | Msa0668760:CDS | 50.0% | |
| AAAACCTTGGAGGCCAAGGA+AGG | + | chr4_4:9971046-9971065 | Msa0668760:CDS | 50.0% | |
| AAACCTTGGAGGCCAAGGAA+GGG | + | chr4_4:9971047-9971066 | Msa0668760:CDS | 50.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_4:9970407-9970426 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_4:9970409-9970428 | Msa0668760:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_4:9970431-9970450 | Msa0668760:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_4:9970476-9970495 | Msa0668760:CDS | 55.0% | |
| GGAGAAAACCTTGGAGGCCA+AGG | + | chr4_4:9971042-9971061 | Msa0668760:CDS | 55.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_4:9970407-9970426 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_4:9970409-9970428 | Msa0668760:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_4:9970431-9970450 | Msa0668760:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_4:9970476-9970495 | Msa0668760:CDS | 55.0% | |
| GGAGAAAACCTTGGAGGCCA+AGG | + | chr4_4:9971042-9971061 | Msa0668760:CDS | 55.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_4:9970356-9970375 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_4:9970497-9970516 | Msa0668760:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_4:9971062-9971081 | None:intergenic | 60.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_4:9970356-9970375 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_4:9970497-9970516 | Msa0668760:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_4:9971062-9971081 | None:intergenic | 60.0% | |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_4:9970352-9970371 | Msa0668760:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_4:9970398-9970417 | Msa0668760:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_4:9970483-9970502 | Msa0668760:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_4:9970488-9970507 | None:intergenic | 65.0% | |
| GTGCCCTTCCTTGGCCTCCA+AGG | - | chr4_4:9971053-9971072 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_4:9971058-9971077 | Msa0668760:CDS | 65.0% |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_4:9970352-9970371 | Msa0668760:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_4:9970398-9970417 | Msa0668760:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_4:9970483-9970502 | Msa0668760:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_4:9970488-9970507 | None:intergenic | 65.0% | |
| GTGCCCTTCCTTGGCCTCCA+AGG | - | chr4_4:9971053-9971072 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_4:9971058-9971077 | Msa0668760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 9970079 | 9971316 | 9970079 | ID=Msa0668760;Name=Msa0668760 |
| chr4_4 | mRNA | 9970079 | 9971316 | 9970079 | ID=Msa0668760-mRNA-1;Parent=Msa0668760;Name=Msa0668760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=64|1|1|1|1|1|2|208|169 |
| chr4_4 | exon | 9970079 | 9970577 | 9970079 | ID=Msa0668760-mRNA-1:exon:3069;Parent=Msa0668760-mRNA-1 |
| chr4_4 | exon | 9971034 | 9971316 | 9971034 | ID=Msa0668760-mRNA-1:exon:3070;Parent=Msa0668760-mRNA-1 |
| chr4_4 | five_prime_UTR | 9970079 | 9970142 | 9970079 | ID=Msa0668760-mRNA-1:five_prime_utr;Parent=Msa0668760-mRNA-1 |
| chr4_4 | CDS | 9970143 | 9970577 | 9970143 | ID=Msa0668760-mRNA-1:cds;Parent=Msa0668760-mRNA-1 |
| chr4_4 | CDS | 9971034 | 9971108 | 9971034 | ID=Msa0668760-mRNA-1:cds;Parent=Msa0668760-mRNA-1 |
| chr4_4 | three_prime_UTR | 9971109 | 9971316 | 9971109 | ID=Msa0668760-mRNA-1:three_prime_utr;Parent=Msa0668760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
