Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668940 | XP_013454888.1 | 93.939 | 198 | 8 | 1 | 1 | 198 | 1 | 194 | 1.63e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668940 | sp|Q8LDV3|Y4320_ARATH | 68.000 | 100 | 25 | 3 | 69 | 163 | 65 | 162 | 5.15e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668940 | A0A072UHP4 | 93.939 | 198 | 8 | 1 | 1 | 198 | 1 | 194 | 7.79e-116 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0668940 | Msa1365420 | 0.803862 | 2.846399e-49 | -8.615850e-47 |
| Msa0178920 | Msa0668940 | 0.800003 | 1.766753e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668940 | MtrunA17_Chr4g0007661 | 93.939 | 198 | 8 | 1 | 1 | 198 | 1 | 194 | 1.50e-119 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668940 | AT4G13200.1 | 68.000 | 100 | 25 | 3 | 69 | 163 | 65 | 162 | 5.24e-35 | 122 |
Find 59 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCCCCGTTTCTTGAAAT+TGG | 0.187757 | 4_4:-10250698 | Msa0668940:three_prime_UTR |
| GAGGATGTTGGAAAAGGTTT+TGG | 0.284562 | 4_4:+10253234 | None:intergenic |
| AAAACAAGTACAGGAATTTC+AGG | 0.306473 | 4_4:-10251781 | Msa0668940:intron |
| TTTATGTTTACTTCTTCCTT+TGG | 0.342946 | 4_4:-10250758 | Msa0668940:three_prime_UTR |
| AACAAGAAGAGTGTGTGTTT+TGG | 0.350346 | 4_4:-10253327 | Msa0668940:five_prime_UTR |
| AGTGGGCTCAATGTATATTT+CGG | 0.360139 | 4_4:+10250855 | None:intergenic |
| ACATTCCAATTTCAAGAAAC+GGG | 0.367974 | 4_4:+10250693 | None:intergenic |
| CACATTCCAATTTCAAGAAA+CGG | 0.378190 | 4_4:+10250692 | None:intergenic |
| CTGGGAAGTTGAATGCATAT+TGG | 0.393109 | 4_4:+10253193 | None:intergenic |
| AGATGGTGAAGGGGAGAGAC+TGG | 0.417011 | 4_4:+10253285 | None:intergenic |
| GTAGACTGTACGGAAGTAAC+TGG | 0.423294 | 4_4:+10250886 | None:intergenic |
| AACTTCCCAGCTGCAACAAA+AGG | 0.425530 | 4_4:-10253180 | Msa0668940:CDS |
| GTGATTATACCTCAATGAAT+AGG | 0.427301 | 4_4:-10250672 | Msa0668940:three_prime_UTR |
| GTCGTGGATTCATCTACTTC+AGG | 0.433894 | 4_4:-10250931 | Msa0668940:CDS |
| AAGTTGAATGCATATTGGTT+TGG | 0.467610 | 4_4:+10253198 | None:intergenic |
| ATCTTTGAGGTGATTTGTGT+TGG | 0.475255 | 4_4:-10250612 | Msa0668940:three_prime_UTR |
| GAGCGCATCGAGTCGACACT+TGG | 0.491487 | 4_4:-10251846 | Msa0668940:CDS |
| ACTTCCCAGCTGCAACAAAA+GGG | 0.495869 | 4_4:-10253179 | Msa0668940:CDS |
| AGCTACAGAGGCACAACCAC+AGG | 0.496781 | 4_4:-10250989 | Msa0668940:CDS |
| TGTTAAAATGTATCACAACT+TGG | 0.497827 | 4_4:-10250718 | Msa0668940:three_prime_UTR |
| TATCACTTATGAACTTAATG+TGG | 0.501100 | 4_4:+10250819 | None:intergenic |
| CAACGACCTTTGCTTCTCCT+AGG | 0.502819 | 4_4:-10253261 | Msa0668940:CDS |
| TCTTATACAGGAAGAAGTGT+TGG | 0.503782 | 4_4:-10251049 | Msa0668940:intron |
| AAAAGAAGGAACGAGGATGT+TGG | 0.503966 | 4_4:+10253222 | None:intergenic |
| AGGAACGAGGATGTTGGAAA+AGG | 0.507028 | 4_4:+10253228 | None:intergenic |
| CTGGAAAGTGTTGGTAAGTG+TGG | 0.512915 | 4_4:-10253378 | Msa0668940:five_prime_UTR |
| ATCACTTATGAACTTAATGT+GGG | 0.538123 | 4_4:+10250820 | None:intergenic |
| TCTTTGAGGTGATTTGTGTT+GGG | 0.540767 | 4_4:-10250611 | Msa0668940:three_prime_UTR |
| GGTGAGCTCTTGAGTACAGT+TGG | 0.546113 | 4_4:-10251825 | Msa0668940:CDS |
| GAAGCAAAGGTCGTTGGAGA+TGG | 0.551491 | 4_4:+10253268 | None:intergenic |
| GTGGGATCCTCCCCTTCAGT+GGG | 0.555642 | 4_4:+10250838 | None:intergenic |
| TGTGGGATCCTCCCCTTCAG+TGG | 0.562869 | 4_4:+10250837 | None:intergenic |
| CTAGGAGAAGCAAAGGTCGT+TGG | 0.568479 | 4_4:+10253262 | None:intergenic |
| AGAGGCACAACCACAGGGAC+TGG | 0.571099 | 4_4:-10250983 | Msa0668940:CDS |
| TGTAACAATACCTTCTTCCC+TGG | 0.577863 | 4_4:-10253133 | Msa0668940:CDS |
| AGGTCGTTGGAGATGGTGAA+GGG | 0.580133 | 4_4:+10253275 | None:intergenic |
| ATATACATTGAGCCCACTGA+AGG | 0.585974 | 4_4:-10250850 | Msa0668940:CDS |
| CATTGAGCCCACTGAAGGGG+AGG | 0.593326 | 4_4:-10250845 | Msa0668940:CDS |
| AAGGTCGTTGGAGATGGTGA+AGG | 0.597936 | 4_4:+10253274 | None:intergenic |
| AACAATACCTTCTTCCCTGG+TGG | 0.600187 | 4_4:-10253130 | Msa0668940:CDS |
| CTTCCCAGCTGCAACAAAAG+GGG | 0.603370 | 4_4:-10253178 | Msa0668940:CDS |
| TTCTGTATAAGCTGTAGACT+CGG | 0.604698 | 4_4:+10250957 | None:intergenic |
| GGATGCATCAGTAGACTGTA+CGG | 0.608134 | 4_4:+10250876 | None:intergenic |
| AAGTGAACACCTATTCATTG+AGG | 0.615195 | 4_4:+10250663 | None:intergenic |
| TATACATTGAGCCCACTGAA+GGG | 0.616249 | 4_4:-10250849 | Msa0668940:CDS |
| GGACAACCTAGGAGAAGCAA+AGG | 0.619092 | 4_4:+10253255 | None:intergenic |
| ATACATTGAGCCCACTGAAG+GGG | 0.634389 | 4_4:-10250848 | Msa0668940:CDS |
| TGGAAAGTGTTGGTAAGTGT+GGG | 0.637486 | 4_4:-10253377 | Msa0668940:five_prime_UTR |
| CTGTACGGAAGTAACTGGAT+CGG | 0.637727 | 4_4:+10250891 | None:intergenic |
| TGGTGAAGGGGAGAGACTGG+TGG | 0.641375 | 4_4:+10253288 | None:intergenic |
| AGCTTATACAGAAGTCGTCG+TGG | 0.643619 | 4_4:-10250947 | Msa0668940:CDS |
| GACTCGGAAACCAGTCCCTG+TGG | 0.653112 | 4_4:+10250973 | None:intergenic |
| AGCAGCGCGTGAAGCTACAG+AGG | 0.653253 | 4_4:-10251001 | Msa0668940:CDS |
| AACTTACATATACATGCCAA+AGG | 0.655340 | 4_4:+10250742 | None:intergenic |
| CATTCCAATTTCAAGAAACG+GGG | 0.657652 | 4_4:+10250694 | None:intergenic |
| ATTGTTACAGCGAAGTCCAG+TGG | 0.665812 | 4_4:+10253147 | None:intergenic |
| GGTCGTTGGAGATGGTGAAG+GGG | 0.668424 | 4_4:+10253276 | None:intergenic |
| GCTACAGAGGCACAACCACA+GGG | 0.669289 | 4_4:-10250988 | Msa0668940:CDS |
| GTGTGGAAACTGGAAAGTGT+TGG | 0.682835 | 4_4:-10253387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTCTATAATTTCATTT+CGG | - | chr4_4:10251047-10251066 | Msa0668940:intron | 15.0% |
| !! | TAGTATATGTTTATAACTTT+AGG | - | chr4_4:10251116-10251135 | Msa0668940:intron | 15.0% |
| !!! | CAATTTTAATCTTAATCAAA+GGG | + | chr4_4:10251709-10251728 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTTTGATAACCA+AGG | - | chr4_4:10251737-10251756 | Msa0668940:intron | 15.0% |
| !! | ATCAGTTATATATTTCAAAA+TGG | - | chr4_4:10252615-10252634 | Msa0668940:intron | 15.0% |
| !! | CTAAAAAAATATATATCGAA+AGG | + | chr4_4:10253206-10253225 | None:intergenic | 15.0% |
| !!! | TTTATTTAACTCTCTTTTGT+TGG | - | chr4_4:10250906-10250925 | Msa0668940:CDS | 20.0% |
| !! | TTTCTCTATAATTTCATTTC+GGG | - | chr4_4:10251048-10251067 | Msa0668940:intron | 20.0% |
| !! | TCTTATAATAATTCCCAATA+GGG | + | chr4_4:10251184-10251203 | None:intergenic | 20.0% |
| !! | TTCTTATAATAATTCCCAAT+AGG | + | chr4_4:10251185-10251204 | None:intergenic | 20.0% |
| !!! | TTTCTTTTATATTTGTCAAC+CGG | + | chr4_4:10251363-10251382 | None:intergenic | 20.0% |
| !!! | GCAATTTTAATCTTAATCAA+AGG | + | chr4_4:10251710-10251729 | None:intergenic | 20.0% |
| !! | TGAATGATAATTCATTCTTA+AGG | - | chr4_4:10251899-10251918 | Msa0668940:CDS | 20.0% |
| !!! | AGGATAGATAGTTTTTTAAA+GGG | + | chr4_4:10251989-10252008 | None:intergenic | 20.0% |
| !!! | AAGGATAGATAGTTTTTTAA+AGG | + | chr4_4:10251990-10252009 | None:intergenic | 20.0% |
| !!! | TATCCTTAGATTTTTGTTTT+AGG | - | chr4_4:10252003-10252022 | Msa0668940:intron | 20.0% |
| !! | AGTAAACAACAATATTGTTT+AGG | + | chr4_4:10252336-10252355 | None:intergenic | 20.0% |
| !! | GTCAAATTATCTGAAAAAAA+AGG | - | chr4_4:10252547-10252566 | Msa0668940:intron | 20.0% |
| !! | TATATTTCAAAATGGTACAT+TGG | - | chr4_4:10252623-10252642 | Msa0668940:intron | 20.0% |
| !! | CGAAATTATAATTCTTATAC+AGG | - | chr4_4:10252926-10252945 | Msa0668940:intron | 20.0% |
| !! | AACAAAAATTTTGTACCAGA+GGG | + | chr4_4:10250887-10250906 | None:intergenic | 25.0% |
| !! | AAACAAAAATTTTGTACCAG+AGG | + | chr4_4:10250888-10250907 | None:intergenic | 25.0% |
| ! | GGAATTATTATTTCCCTATT+GGG | - | chr4_4:10251168-10251187 | Msa0668940:intron | 25.0% |
| ! | ATTAATGCAATCATATGTGT+CGG | - | chr4_4:10251213-10251232 | Msa0668940:intron | 25.0% |
| !!! | TACTTTTCATTTAGCTCAAA+AGG | - | chr4_4:10251594-10251613 | Msa0668940:intron | 25.0% |
| ! | TATCATTCATCACTAAATTG+TGG | + | chr4_4:10251888-10251907 | None:intergenic | 25.0% |
| ! | ATTACATAGTCGTAAATATG+TGG | - | chr4_4:10251943-10251962 | Msa0668940:intron | 25.0% |
| ! | GTACCTAAAACAAAAATCTA+AGG | + | chr4_4:10252009-10252028 | None:intergenic | 25.0% |
| ! | ATTGAATCTGTTATCTCATA+TGG | - | chr4_4:10252294-10252313 | Msa0668940:intron | 25.0% |
| ! | TTGAATCTGTTATCTCATAT+GGG | - | chr4_4:10252295-10252314 | Msa0668940:intron | 25.0% |
| ! | TGTTTACTAACTATATTCGT+TGG | - | chr4_4:10252348-10252367 | Msa0668940:intron | 25.0% |
| ! | AAAAAAAAGGTTCCGAATTT+CGG | - | chr4_4:10252560-10252579 | Msa0668940:intron | 25.0% |
| ! | TCTTTATAACTACCGAAATT+CGG | + | chr4_4:10252575-10252594 | None:intergenic | 25.0% |
| ! | ATTAACTCAGGAATTCAAAT+TGG | + | chr4_4:10252654-10252673 | None:intergenic | 25.0% |
| !! | TAATTTAAAATGACCGCTTA+TGG | - | chr4_4:10252866-10252885 | Msa0668940:intron | 25.0% |
| !! | AATTTAAAATGACCGCTTAT+GGG | - | chr4_4:10252867-10252886 | Msa0668940:intron | 25.0% |
| ! | ATCACTTATGAACTTAATGT+GGG | + | chr4_4:10253170-10253189 | None:intergenic | 25.0% |
| ! | TATCACTTATGAACTTAATG+TGG | + | chr4_4:10253171-10253190 | None:intergenic | 25.0% |
| ! | TTTATGTTTACTTCTTCCTT+TGG | - | chr4_4:10253229-10253248 | Msa0668940:CDS | 25.0% |
| ! | TGTTAAAATGTATCACAACT+TGG | - | chr4_4:10253269-10253288 | Msa0668940:CDS | 25.0% |
| !! | TGTGTTTTTCATAATCTTTG+AGG | - | chr4_4:10253362-10253381 | Msa0668940:five_prime_UTR | 25.0% |
| !! | CATATTGGTTTGGAAAAAGA+AGG | + | chr4_4:10250782-10250801 | None:intergenic | 30.0% |
| ! | AAGTTGAATGCATATTGGTT+TGG | + | chr4_4:10250792-10250811 | None:intergenic | 30.0% |
| ! | ACAAAAATTTTGTACCAGAG+GGG | + | chr4_4:10250886-10250905 | None:intergenic | 30.0% |
| TAGGATGAACAATTGAATTC+AGG | - | chr4_4:10251135-10251154 | Msa0668940:intron | 30.0% | |
| AGGATGAACAATTGAATTCA+GGG | - | chr4_4:10251136-10251155 | Msa0668940:intron | 30.0% | |
| ATTGAATTCAGGGAACTTAT+TGG | - | chr4_4:10251146-10251165 | Msa0668940:intron | 30.0% | |
| TTGAATTCAGGGAACTTATT+GGG | - | chr4_4:10251147-10251166 | Msa0668940:intron | 30.0% | |
| GGGAATTATTATTTCCCTAT+TGG | - | chr4_4:10251167-10251186 | Msa0668940:intron | 30.0% | |
| TATGAAACACATATACTCCT+CGG | + | chr4_4:10251290-10251309 | None:intergenic | 30.0% | |
| ATTCAATCAGTTCAATCAGT+GGG | - | chr4_4:10251333-10251352 | Msa0668940:intron | 30.0% | |
| GTTAGAATATTCTCCATCTT+TGG | + | chr4_4:10251654-10251673 | None:intergenic | 30.0% | |
| AAACCAGAATGTTACAATCA+TGG | - | chr4_4:10251787-10251806 | Msa0668940:CDS | 30.0% | |
| AAATCCGATGGTTTAAAAAC+CGG | + | chr4_4:10251864-10251883 | None:intergenic | 30.0% | |
| CGACTATGTAATTACAAGTT+TGG | + | chr4_4:10251935-10251954 | None:intergenic | 30.0% | |
| TCGTAAATATGTGGTTTACA+CGG | - | chr4_4:10251952-10251971 | Msa0668940:intron | 30.0% | |
| TTGAAGTATGTGAATCATGT+AGG | - | chr4_4:10252045-10252064 | Msa0668940:intron | 30.0% | |
| TGAACAACAAAAACAAGTAC+AGG | - | chr4_4:10252197-10252216 | Msa0668940:intron | 30.0% | |
| AAAACAAGTACAGGAATTTC+AGG | - | chr4_4:10252206-10252225 | Msa0668940:intron | 30.0% | |
| ! | AGGTAAGGAACATTTTCAAT+TGG | - | chr4_4:10252226-10252245 | Msa0668940:intron | 30.0% |
| ATAGTTTATACCATAAACCC+AGG | + | chr4_4:10252263-10252282 | None:intergenic | 30.0% | |
| ATTTGTTCAAATCTACAAGC+AGG | + | chr4_4:10252384-10252403 | None:intergenic | 30.0% | |
| TTTGCTGCAAGACATATTAT+TGG | - | chr4_4:10252675-10252694 | Msa0668940:intron | 30.0% | |
| TTGCTGCAAGACATATTATT+GGG | - | chr4_4:10252676-10252695 | Msa0668940:intron | 30.0% | |
| !!! | TGCTTTTTCCTTTGCTTTTT+TGG | + | chr4_4:10252970-10252989 | None:intergenic | 30.0% |
| AACTTACATATACATGCCAA+AGG | + | chr4_4:10253248-10253267 | None:intergenic | 30.0% | |
| ACATTCCAATTTCAAGAAAC+GGG | + | chr4_4:10253297-10253316 | None:intergenic | 30.0% | |
| CACATTCCAATTTCAAGAAA+CGG | + | chr4_4:10253298-10253317 | None:intergenic | 30.0% | |
| GTGATTATACCTCAATGAAT+AGG | - | chr4_4:10253315-10253334 | Msa0668940:exon | 30.0% | |
| !! | AACAAGAAGAGTGTGTGTTT+TGG | - | chr4_4:10250660-10250679 | Msa0668940:three_prime_UTR | 35.0% |
| ! | AAAAATTTTGTACCAGAGGG+GGG | + | chr4_4:10250884-10250903 | None:intergenic | 35.0% |
| ! | CAAAAATTTTGTACCAGAGG+GGG | + | chr4_4:10250885-10250904 | None:intergenic | 35.0% |
| GTTCTTGAATTCCATGAAGA+AGG | - | chr4_4:10250946-10250965 | Msa0668940:CDS | 35.0% | |
| GATGTTAACAACCTTCTTCA+TGG | + | chr4_4:10250960-10250979 | None:intergenic | 35.0% | |
| CTCTATAATTTCATTTCGGG+TGG | - | chr4_4:10251051-10251070 | Msa0668940:intron | 35.0% | |
| ! | TATAATTTCATTTCGGGTGG+TGG | - | chr4_4:10251054-10251073 | Msa0668940:intron | 35.0% |
| ! | ATAATTTCATTTCGGGTGGT+GGG | - | chr4_4:10251055-10251074 | Msa0668940:intron | 35.0% |
| GAGTATATGTGTTTCATAGC+CGG | - | chr4_4:10251292-10251311 | Msa0668940:intron | 35.0% | |
| GATTCAATCAGTTCAATCAG+TGG | - | chr4_4:10251332-10251351 | Msa0668940:intron | 35.0% | |
| ! | GTATGTTGATGAACAATTGC+TGG | - | chr4_4:10251527-10251546 | Msa0668940:intron | 35.0% |
| ! | ACAACCATTTTCACCAAAGA+TGG | - | chr4_4:10251638-10251657 | Msa0668940:intron | 35.0% |
| TTCTCCATCTTTGGTGAAAA+TGG | + | chr4_4:10251645-10251664 | None:intergenic | 35.0% | |
| GGAGAATATTCTAACAGACT+TGG | - | chr4_4:10251659-10251678 | Msa0668940:intron | 35.0% | |
| GCAGTACTGTAACATTCAAT+TGG | - | chr4_4:10251762-10251781 | Msa0668940:intron | 35.0% | |
| CTAAATTGTGGAAAATCCGA+TGG | + | chr4_4:10251876-10251895 | None:intergenic | 35.0% | |
| TATGTGAATCATGTAGGTGA+TGG | - | chr4_4:10252051-10252070 | Msa0668940:intron | 35.0% | |
| !! | GTTCTGGATGCATTTTTCTT+AGG | - | chr4_4:10252093-10252112 | Msa0668940:intron | 35.0% |
| ! | AAGTACAGGAATTTCAGGTA+AGG | - | chr4_4:10252211-10252230 | Msa0668940:intron | 35.0% |
| AATCGCTATTGTTCAACTCT+AGG | - | chr4_4:10252401-10252420 | Msa0668940:intron | 35.0% | |
| ! | TACAAACTATCGTCAAGTTG+AGG | - | chr4_4:10252432-10252451 | Msa0668940:intron | 35.0% |
| TAAATCCCTTAACGCTACAA+TGG | + | chr4_4:10252474-10252493 | None:intergenic | 35.0% | |
| CTCAGGAATTCAAATTGGAT+AGG | + | chr4_4:10252649-10252668 | None:intergenic | 35.0% | |
| CTTGCAGCAAAAATTAACTC+AGG | + | chr4_4:10252666-10252685 | None:intergenic | 35.0% | |
| ! | TGGGCCATAAAAGTATATGT+CGG | - | chr4_4:10252695-10252714 | Msa0668940:intron | 35.0% |
| !! | TGCACCGACATATACTTTTA+TGG | + | chr4_4:10252702-10252721 | None:intergenic | 35.0% |
| GACACAAAAATGACACTTGT+CGG | + | chr4_4:10252786-10252805 | None:intergenic | 35.0% | |
| GTGTCTGTATACCAATCTAA+TGG | - | chr4_4:10252831-10252850 | Msa0668940:intron | 35.0% | |
| ATCTAACATAGTCCCATAAG+CGG | + | chr4_4:10252882-10252901 | None:intergenic | 35.0% | |
| ! | TCTTATACAGGAAGAAGTGT+TGG | - | chr4_4:10252938-10252957 | Msa0668940:intron | 35.0% |
| TTCTGTATAAGCTGTAGACT+CGG | + | chr4_4:10253033-10253052 | None:intergenic | 35.0% | |
| ! | AGTGGGCTCAATGTATATTT+CGG | + | chr4_4:10253135-10253154 | None:intergenic | 35.0% |
| CATTCCAATTTCAAGAAACG+GGG | + | chr4_4:10253296-10253315 | None:intergenic | 35.0% | |
| AAGTGAACACCTATTCATTG+AGG | + | chr4_4:10253327-10253346 | None:intergenic | 35.0% | |
| !! | ATCTTTGAGGTGATTTGTGT+TGG | - | chr4_4:10253375-10253394 | Msa0668940:five_prime_UTR | 35.0% |
| !!! | GAAAAGGTTTTGGACAACCT+AGG | + | chr4_4:10250746-10250765 | None:intergenic | 40.0% |
| ! | GAGGATGTTGGAAAAGGTTT+TGG | + | chr4_4:10250756-10250775 | None:intergenic | 40.0% |
| AAAAGAAGGAACGAGGATGT+TGG | + | chr4_4:10250768-10250787 | None:intergenic | 40.0% | |
| GTTTGGAAAAAGAAGGAACG+AGG | + | chr4_4:10250775-10250794 | None:intergenic | 40.0% | |
| CTGGGAAGTTGAATGCATAT+TGG | + | chr4_4:10250797-10250816 | None:intergenic | 40.0% | |
| TGTAACAATACCTTCTTCCC+TGG | - | chr4_4:10250854-10250873 | Msa0668940:CDS | 40.0% | |
| ACACATATACTCCTCGGATT+AGG | + | chr4_4:10251284-10251303 | None:intergenic | 40.0% | |
| AGACTTCATTGAGACCGATT+TGG | - | chr4_4:10251440-10251459 | Msa0668940:intron | 40.0% | |
| !! | TGAGACCGATTTGGATTGTT+AGG | - | chr4_4:10251449-10251468 | Msa0668940:intron | 40.0% |
| !! | GAGACCGATTTGGATTGTTA+GGG | - | chr4_4:10251450-10251469 | Msa0668940:intron | 40.0% |
| TGCTCCCTAACAATCCAAAT+CGG | + | chr4_4:10251457-10251476 | None:intergenic | 40.0% | |
| TGGCCATGATTGTAACATTC+TGG | + | chr4_4:10251793-10251812 | None:intergenic | 40.0% | |
| ACAATCATGGCCAAACCAAT+CGG | - | chr4_4:10251800-10251819 | Msa0668940:CDS | 40.0% | |
| CGATTCAACCAGGAATCTAT+CGG | + | chr4_4:10251830-10251849 | None:intergenic | 40.0% | |
| GTTTAAAAACCGGACTGAAC+TGG | + | chr4_4:10251854-10251873 | None:intergenic | 40.0% | |
| ! | CAGTCCGGTTTTTAAACCAT+CGG | - | chr4_4:10251857-10251876 | Msa0668940:CDS | 40.0% |
| TAGCAGCAGCAAAAATGTTC+TGG | - | chr4_4:10252077-10252096 | Msa0668940:intron | 40.0% | |
| AATTGGCATTGTGTTGTCCT+GGG | - | chr4_4:10252243-10252262 | Msa0668940:intron | 40.0% | |
| ATTGTGTTGTCCTGGGTTTA+TGG | - | chr4_4:10252250-10252269 | Msa0668940:intron | 40.0% | |
| ! | ATCTCATATGGGTTTGCTTC+AGG | - | chr4_4:10252306-10252325 | Msa0668940:intron | 40.0% |
| CTAGACCATTGTAGCGTTAA+GGG | - | chr4_4:10252466-10252485 | Msa0668940:intron | 40.0% | |
| CGATCTACAATTGACAATCC+AGG | - | chr4_4:10252513-10252532 | Msa0668940:intron | 40.0% | |
| ACAATTGACAATCCAGGTAC+TGG | - | chr4_4:10252519-10252538 | Msa0668940:intron | 40.0% | |
| CAATTGACAATCCAGGTACT+GGG | - | chr4_4:10252520-10252539 | Msa0668940:intron | 40.0% | |
| ! | AATTGACAATCCAGGTACTG+GGG | - | chr4_4:10252521-10252540 | Msa0668940:intron | 40.0% |
| TCGGTGCACTGTATATCAAA+TGG | - | chr4_4:10252714-10252733 | Msa0668940:intron | 40.0% | |
| !! | CCTTGAATCTGAAGTGTTGA+TGG | + | chr4_4:10252752-10252771 | None:intergenic | 40.0% |
| CCATCAACACTTCAGATTCA+AGG | - | chr4_4:10252749-10252768 | Msa0668940:intron | 40.0% | |
| ! | GTACTAGAGCACCATTAGAT+TGG | + | chr4_4:10252845-10252864 | None:intergenic | 40.0% |
| GGATAGAGCCAAAAAAGCAA+AGG | - | chr4_4:10252959-10252978 | Msa0668940:intron | 40.0% | |
| ATATACATTGAGCCCACTGA+AGG | - | chr4_4:10253137-10253156 | Msa0668940:CDS | 40.0% | |
| TATACATTGAGCCCACTGAA+GGG | - | chr4_4:10253138-10253157 | Msa0668940:CDS | 40.0% | |
| AGGAACGAGGATGTTGGAAA+AGG | + | chr4_4:10250762-10250781 | None:intergenic | 45.0% | |
| AACTTCCCAGCTGCAACAAA+AGG | - | chr4_4:10250807-10250826 | Msa0668940:exon | 45.0% | |
| ACTTCCCAGCTGCAACAAAA+GGG | - | chr4_4:10250808-10250827 | Msa0668940:exon | 45.0% | |
| ! | AAACCCCTTTTGTTGCAGCT+GGG | + | chr4_4:10250815-10250834 | None:intergenic | 45.0% |
| ! | AAAACCCCTTTTGTTGCAGC+TGG | + | chr4_4:10250816-10250835 | None:intergenic | 45.0% |
| ! | AAAAGGGGTTTTCAGACCAC+TGG | - | chr4_4:10250824-10250843 | Msa0668940:exon | 45.0% |
| ATTGTTACAGCGAAGTCCAG+TGG | + | chr4_4:10250843-10250862 | None:intergenic | 45.0% | |
| AACAATACCTTCTTCCCTGG+TGG | - | chr4_4:10250857-10250876 | Msa0668940:CDS | 45.0% | |
| ! | ATCATATGTGTCGGTGTGTG+TGG | - | chr4_4:10251222-10251241 | Msa0668940:intron | 45.0% |
| ! | TCATATGTGTCGGTGTGTGT+GGG | - | chr4_4:10251223-10251242 | Msa0668940:intron | 45.0% |
| ACACGATACATATCCGACAC+CGG | - | chr4_4:10251252-10251271 | Msa0668940:intron | 45.0% | |
| TCATGACCAGAATGTCTCAC+CGG | + | chr4_4:10251314-10251333 | None:intergenic | 45.0% | |
| AGTTCAATCAGTGGGTGAAC+CGG | - | chr4_4:10251341-10251360 | Msa0668940:intron | 45.0% | |
| GGTCTCAATGAAGTCTGAAC+TGG | + | chr4_4:10251436-10251455 | None:intergenic | 45.0% | |
| TGACGATCCTTGTTCACTAC+AGG | - | chr4_4:10251481-10251500 | Msa0668940:intron | 45.0% | |
| TAGAGCTCCTGTAGTGAACA+AGG | + | chr4_4:10251491-10251510 | None:intergenic | 45.0% | |
| ! | CACTACAGGAGCTCTAATGA+TGG | - | chr4_4:10251495-10251514 | Msa0668940:intron | 45.0% |
| ATGTTACAGTACTGCTGCCT+TGG | + | chr4_4:10251757-10251776 | None:intergenic | 45.0% | |
| !! | TATCGGTTTGCCGATTGGTT+TGG | + | chr4_4:10251813-10251832 | None:intergenic | 45.0% |
| !! | GAATCTATCGGTTTGCCGAT+TGG | + | chr4_4:10251818-10251837 | None:intergenic | 45.0% |
| TTGAATCGACCAGTTCAGTC+CGG | - | chr4_4:10251842-10251861 | Msa0668940:CDS | 45.0% | |
| CAATTGGCATTGTGTTGTCC+TGG | - | chr4_4:10252242-10252261 | Msa0668940:intron | 45.0% | |
| !! | TCGTCAAGTTGAGGCTATAG+TGG | - | chr4_4:10252441-10252460 | Msa0668940:intron | 45.0% |
| GCTAGACCATTGTAGCGTTA+AGG | - | chr4_4:10252465-10252484 | Msa0668940:intron | 45.0% | |
| !! | ATTGACAATCCAGGTACTGG+GGG | - | chr4_4:10252522-10252541 | Msa0668940:intron | 45.0% |
| AGCTTATACAGAAGTCGTCG+TGG | - | chr4_4:10253040-10253059 | Msa0668940:intron | 45.0% | |
| GTCGTGGATTCATCTACTTC+AGG | - | chr4_4:10253056-10253075 | Msa0668940:intron | 45.0% | |
| CTGTACGGAAGTAACTGGAT+CGG | + | chr4_4:10253099-10253118 | None:intergenic | 45.0% | |
| GTAGACTGTACGGAAGTAAC+TGG | + | chr4_4:10253104-10253123 | None:intergenic | 45.0% | |
| GGATGCATCAGTAGACTGTA+CGG | + | chr4_4:10253114-10253133 | None:intergenic | 45.0% | |
| ATACATTGAGCCCACTGAAG+GGG | - | chr4_4:10253139-10253158 | Msa0668940:CDS | 45.0% | |
| TGGTCCCCGTTTCTTGAAAT+TGG | - | chr4_4:10253289-10253308 | Msa0668940:CDS | 45.0% | |
| AGGTCGTTGGAGATGGTGAA+GGG | + | chr4_4:10250715-10250734 | None:intergenic | 50.0% | |
| AAGGTCGTTGGAGATGGTGA+AGG | + | chr4_4:10250716-10250735 | None:intergenic | 50.0% | |
| GAAGCAAAGGTCGTTGGAGA+TGG | + | chr4_4:10250722-10250741 | None:intergenic | 50.0% | |
| CTAGGAGAAGCAAAGGTCGT+TGG | + | chr4_4:10250728-10250747 | None:intergenic | 50.0% | |
| CAACGACCTTTGCTTCTCCT+AGG | - | chr4_4:10250726-10250745 | Msa0668940:three_prime_UTR | 50.0% | |
| GGACAACCTAGGAGAAGCAA+AGG | + | chr4_4:10250735-10250754 | None:intergenic | 50.0% | |
| CTTCCCAGCTGCAACAAAAG+GGG | - | chr4_4:10250809-10250828 | Msa0668940:exon | 50.0% | |
| !! | ATTTCATTTCGGGTGGTGGG+TGG | - | chr4_4:10251058-10251077 | Msa0668940:intron | 50.0% |
| !! | TTTCATTTCGGGTGGTGGGT+GGG | - | chr4_4:10251059-10251078 | Msa0668940:intron | 50.0% |
| CACGATACATATCCGACACC+GGG | - | chr4_4:10251253-10251272 | Msa0668940:intron | 50.0% | |
| TCATAGCCGGTGAGACATTC+TGG | - | chr4_4:10251305-10251324 | Msa0668940:intron | 50.0% | |
| AGTCTGAACTGGCTGAACTG+CGG | + | chr4_4:10251425-10251444 | None:intergenic | 50.0% | |
| TCGGCAAACCGATAGATTCC+TGG | - | chr4_4:10251819-10251838 | Msa0668940:CDS | 50.0% | |
| ! | CTGAACTGGTCGATTCAACC+AGG | + | chr4_4:10251840-10251859 | None:intergenic | 50.0% |
| GGTGAGCTCTTGAGTACAGT+TGG | - | chr4_4:10252162-10252181 | Msa0668940:intron | 50.0% | |
| ATTTGACAACCCCCAGTACC+TGG | + | chr4_4:10252534-10252553 | None:intergenic | 50.0% | |
| AGATGGTGAAGGGGAGAGAC+TGG | + | chr4_4:10250705-10250724 | None:intergenic | 55.0% | |
| GGTCGTTGGAGATGGTGAAG+GGG | + | chr4_4:10250714-10250733 | None:intergenic | 55.0% | |
| ! | AGCTACAGAGGCACAACCAC+AGG | - | chr4_4:10252998-10253017 | Msa0668940:intron | 55.0% |
| ! | GCTACAGAGGCACAACCACA+GGG | - | chr4_4:10252999-10253018 | Msa0668940:intron | 55.0% |
| TGGTGAAGGGGAGAGACTGG+TGG | + | chr4_4:10250702-10250721 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr4_4:10251268-10251287 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr4_4:10251274-10251293 | None:intergenic | 60.0% |
| GAGCGCATCGAGTCGACACT+TGG | - | chr4_4:10252141-10252160 | Msa0668940:intron | 60.0% | |
| AGCAGCGCGTGAAGCTACAG+AGG | - | chr4_4:10252986-10253005 | Msa0668940:intron | 60.0% | |
| ! | AGAGGCACAACCACAGGGAC+TGG | - | chr4_4:10253004-10253023 | Msa0668940:intron | 60.0% |
| GACTCGGAAACCAGTCCCTG+TGG | + | chr4_4:10253017-10253036 | None:intergenic | 60.0% | |
| CATTGAGCCCACTGAAGGGG+AGG | - | chr4_4:10253142-10253161 | Msa0668940:CDS | 60.0% | |
| GTGGGATCCTCCCCTTCAGT+GGG | + | chr4_4:10253152-10253171 | None:intergenic | 60.0% | |
| TGTGGGATCCTCCCCTTCAG+TGG | + | chr4_4:10253153-10253172 | None:intergenic | 60.0% | |
| TACCAGAGGGGGGTCCACCA+GGG | + | chr4_4:10250874-10250893 | None:intergenic | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr4_4:10251270-10251289 | Msa0668940:intron | 65.0% | |
| GGGGGGTCCACCAGGGAAGA+AGG | + | chr4_4:10250867-10250886 | None:intergenic | 70.0% | |
| ! | TTCCCTGGTGGACCCCCCTC+TGG | - | chr4_4:10250869-10250888 | Msa0668940:CDS | 70.0% |
| GTACCAGAGGGGGGTCCACC+AGG | + | chr4_4:10250875-10250894 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 10250611 | 10253398 | 10250611 | ID=Msa0668940;Name=Msa0668940 |
| chr4_4 | mRNA | 10250611 | 10253398 | 10250611 | ID=Msa0668940-mRNA-1;Parent=Msa0668940;Name=Msa0668940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=81|1|1|1|1|1|3|214|198 |
| chr4_4 | exon | 10250611 | 10251061 | 10250611 | ID=Msa0668940-mRNA-1:exon:3109;Parent=Msa0668940-mRNA-1 |
| chr4_4 | exon | 10251782 | 10251942 | 10251782 | ID=Msa0668940-mRNA-1:exon:3108;Parent=Msa0668940-mRNA-1 |
| chr4_4 | exon | 10253119 | 10253398 | 10253119 | ID=Msa0668940-mRNA-1:exon:3107;Parent=Msa0668940-mRNA-1 |
| chr4_4 | five_prime_UTR | 10253318 | 10253398 | 10253318 | ID=Msa0668940-mRNA-1:five_prime_utr;Parent=Msa0668940-mRNA-1 |
| chr4_4 | CDS | 10253119 | 10253317 | 10253119 | ID=Msa0668940-mRNA-1:cds;Parent=Msa0668940-mRNA-1 |
| chr4_4 | CDS | 10251782 | 10251942 | 10251782 | ID=Msa0668940-mRNA-1:cds;Parent=Msa0668940-mRNA-1 |
| chr4_4 | CDS | 10250825 | 10251061 | 10250825 | ID=Msa0668940-mRNA-1:cds;Parent=Msa0668940-mRNA-1 |
| chr4_4 | three_prime_UTR | 10250611 | 10250824 | 10250611 | ID=Msa0668940-mRNA-1:three_prime_utr;Parent=Msa0668940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
