AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365420 MtrunA17_Chr1g0207711 80.943 488 92 1 1 488 60 546 0.0 819
Msa1365420 MtrunA17_Chr1g0207711 87.554 233 28 1 465 697 651 882 6.24e-140 437
Msa1365420 MtrunA17_Chr4g0071781 93.233 133 9 0 465 597 305 437 3.58e-80 265
Msa1365420 MtrunA17_Chr4g0071781 96.721 122 4 0 1 122 45 166 2.62e-73 247
Msa1365420 MtrunA17_Chr4g0071761 97.436 78 2 0 755 832 38 115 1.24e-46 162
Msa1365420 MtrunA17_Chr4g0071761 70.886 79 23 0 684 762 34 112 1.57e-29 113
Msa1365420 MtrunA17_Chr4g0071771 90.667 75 7 0 688 762 38 112 2.09e-38 138
Msa1365420 MtrunA17_Chr4g0071771 59.649 114 44 1 721 832 2 115 3.11e-37 135
Msa1365420 MtrunA17_Chr4g0005161 65.672 67 23 0 688 754 38 104 3.02e-24 98.6
Msa1365420 MtrunA17_Chr4g0005161 56.410 78 34 0 755 832 38 115 4.53e-24 97.8
Msa1365420 MtrunA17_Chr7g0238011 56.250 80 33 2 688 766 38 116 3.11e-21 90.1
Msa1365420 MtrunA17_Chr7g0238011 42.593 108 48 1 722 829 19 112 7.90e-21 89.0
Msa1365420 MtrunA17_Chr7g0243451 50.746 67 33 0 687 753 37 103 1.05e-16 76.6
Msa1365420 MtrunA17_Chr7g0243451 42.424 66 38 0 754 819 37 102 1.87e-12 64.7
Msa1365420 MtrunA17_Chr4g0005151 48.529 68 35 0 686 753 36 103 1.20e-16 76.6
Msa1365420 MtrunA17_Chr4g0005151 43.939 66 37 0 754 819 37 102 9.42e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365420 AT4G34260.1 57.428 451 161 5 26 467 44 472 1.04e-176 531
Msa1365420 AT4G34260.1 68.240 233 72 2 465 697 598 828 8.68e-103 337
Msa1365420 AT5G57170.1 87.879 66 8 0 688 753 38 103 7.64e-32 120
Msa1365420 AT5G57170.1 70.513 78 23 0 755 832 38 115 1.86e-29 113
Msa1365420 AT5G57170.2 87.879 66 8 0 688 753 38 103 2.65e-31 119
Msa1365420 AT5G57170.2 73.846 65 17 0 755 819 38 102 1.53e-24 99.8
Msa1365420 AT5G01650.1 53.846 78 36 0 755 832 38 115 1.70e-23 96.7
Msa1365420 AT5G01650.1 50.588 85 42 0 670 754 20 104 4.41e-23 95.5
Msa1365420 AT5G01650.4 62.687 67 25 0 688 754 38 104 2.13e-23 96.3
Msa1365420 AT5G01650.4 42.157 102 45 1 722 823 19 106 7.13e-20 86.3
Msa1365420 AT5G01650.2 62.687 67 25 0 688 754 38 104 2.43e-23 96.3
Msa1365420 AT5G01650.2 53.731 67 31 0 755 821 38 104 3.45e-19 84.7
Msa1365420 AT5G01650.3 62.687 67 25 0 688 754 38 104 2.43e-23 96.3
Msa1365420 AT5G01650.3 53.731 67 31 0 755 821 38 104 3.45e-19 84.7
Msa1365420 AT3G51660.1 42.029 69 40 0 684 752 34 102 6.95e-12 63.5

Find 193 sgRNAs with CRISPR-Local

Find 714 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCTTCAAATGAATTAT+TGG 0.184612 tig0018287:-11118 Msa1365420:CDS
GTAGTCTCATTTCGGAATTC+TGG 0.218207 tig0018287:+9474 None:intergenic
CTGCGCTGCCTCGGGATAAA+TGG 0.224145 tig0018287:-9598 Msa1365420:CDS
ATTATCATTTACAGTATCTT+TGG 0.233665 tig0018287:-12034 Msa1365420:CDS
CATTTGTTTGGCTTGTTTCC+GGG 0.239436 tig0018287:-10340 Msa1365420:CDS
AAAAGGAGTTATACATGTTT+TGG 0.239754 tig0018287:-11854 Msa1365420:CDS
ATACGGGTGATATATGAAAA+TGG 0.241192 tig0018287:-3863 Msa1365420:three_prime_UTR
CGGACTTCAGCCAGCGCTTC+AGG 0.247003 tig0018287:+12763 None:intergenic
CCCTCATTTGTTGGGTTCAA+TGG 0.255846 tig0018287:-4009 Msa1365420:CDS
ACATTTGTTTGGCTTGTTTC+CGG 0.260856 tig0018287:-10341 Msa1365420:CDS
ATTTCAGTATATGTGTATTT+TGG 0.269503 tig0018287:-4337 Msa1365420:intron
GCAGAAAACTGAATTCCTTT+TGG 0.286309 tig0018287:+11904 None:intergenic
TGCTAGGGATGGATCAATTA+TGG 0.289988 tig0018287:-10570 Msa1365420:CDS
ACAGCTTCCTCGTCGTTTGA+TGG 0.292756 tig0018287:-11781 Msa1365420:CDS
ACCCAAAGTTCGCGTCAATT+TGG 0.294452 tig0018287:+9786 None:intergenic
ACAAAGATGTTGTGCCTAAA+TGG 0.300498 tig0018287:-11366 Msa1365420:CDS
TCGTCTTGGTGCCATGATTT+GGG 0.304806 tig0018287:-13132 Msa1365420:CDS
CGGCATGTTTCACATTTGTT+TGG 0.319279 tig0018287:-10352 Msa1365420:CDS
AGGTTTGCCACCTGAGTTCC+AGG 0.326926 tig0018287:+11403 None:intergenic
CTGATATCAATTGGCGGACT+TGG 0.336187 tig0018287:-7955 Msa1365420:CDS
ATGAAGCTCAGTAATGAAAA+AGG 0.338778 tig0018287:-11871 Msa1365420:CDS
TGTATACAGCCCTCATTTGT+TGG 0.340070 tig0018287:-4018 Msa1365420:intron
GTCGTCTTGGTGCCATGATT+TGG 0.342453 tig0018287:-13133 Msa1365420:CDS
TCATCTGCATTTGCTAAACT+TGG 0.351811 tig0018287:+13236 None:intergenic
CACAAAATTTGATGTAGAAT+CGG 0.352529 tig0018287:+4160 None:intergenic
TCCAAATTGACGCGAACTTT+GGG 0.352849 tig0018287:-9787 Msa1365420:intron
TGGCAAACCTACAGGGTATA+TGG 0.362855 tig0018287:-11390 Msa1365420:CDS
ATGAAGGTATACCAACTTCT+TGG 0.363031 tig0018287:-12249 Msa1365420:intron
ATAAAATTTGATGTAGAATC+TGG 0.367314 tig0018287:+7861 None:intergenic
TTCCAAATTGACGCGAACTT+TGG 0.374868 tig0018287:-9788 Msa1365420:CDS
GTATACAGCCCTCATTTGTT+GGG 0.374985 tig0018287:-4017 Msa1365420:intron
TATGGAGAACTGATATCAAT+TGG 0.375559 tig0018287:-4264 Msa1365420:CDS
TCTATAATGTAGTCTCATTT+CGG 0.379763 tig0018287:+9466 None:intergenic
AACTTGGAAAGCTGCATTGT+GGG 0.388241 tig0018287:-9939 Msa1365420:CDS
CAATGTATAGTTTAGTTTGA+AGG 0.396267 tig0018287:+7890 None:intergenic
AAACCAACAGCTTCCTGCTC+AGG 0.402559 tig0018287:+9854 None:intergenic
ACTTACTTCCTGCGCTGCCT+CGG 0.402607 tig0018287:-9607 Msa1365420:CDS
CTCAAATTGTCGGGACCTCC+TGG 0.407621 tig0018287:-12694 Msa1365420:CDS
TGAACCTTCAATGCCCTTGA+AGG 0.412727 tig0018287:-13210 Msa1365420:CDS
ATCAAAATGAGGAACATAGA+AGG 0.413217 tig0018287:+3830 None:intergenic
TGCGCTGCCTCGGGATAAAT+GGG 0.419323 tig0018287:-9597 Msa1365420:CDS
ATCTGCATGAAGTTGGCCTT+TGG 0.420261 tig0018287:-9505 Msa1365420:CDS
ATATCACAGAGAACTTGATT+TGG 0.422817 tig0018287:-12175 Msa1365420:CDS
TGATAATGACCCCGGTTTGC+TGG 0.423991 tig0018287:+12050 None:intergenic
GGTGGAGTGCCTATTGCATT+TGG 0.425683 tig0018287:-8009 Msa1365420:CDS
TCTTCACAGAGGACACACTA+TGG 0.426753 tig0018287:-12822 Msa1365420:intron
ATGGAGAACTGATATCAATT+GGG 0.427403 tig0018287:-4263 Msa1365420:CDS
ACATGCCGATGATGTACATC+TGG 0.430968 tig0018287:+10367 None:intergenic
GGAAGATGGAGAATGGATTA+TGG 0.432678 tig0018287:-13291 Msa1365420:CDS
GGGAAAACATACTCCCATTT+AGG 0.432850 tig0018287:+11352 None:intergenic
GAGAGCTGCAGTTGTAGCTT+CGG 0.436172 tig0018287:+12714 None:intergenic
GTAACCTTCAAGGGCATTGA+AGG 0.437048 tig0018287:+13206 None:intergenic
GGAGGAGTGCCAATTGCATT+TGG 0.445640 tig0018287:-4309 Msa1365420:CDS
ATTTCCTCTTTGTCAGTCAA+TGG 0.448002 tig0018287:-11044 Msa1365420:CDS
TTTCTAGGCCTGCCAAGTAC+TGG 0.448087 tig0018287:-13181 Msa1365420:CDS
CAAAGATGTTGTGCCTAAAT+GGG 0.448272 tig0018287:-11365 Msa1365420:CDS
TGAAAGAAAGTCTGATCAAA+AGG 0.452104 tig0018287:+3981 None:intergenic
TAGAGTTGAAGGTTCAGATT+GGG 0.452982 tig0018287:-11818 Msa1365420:CDS
TCCACAGCTTTACAAAGATC+TGG 0.454802 tig0018287:+10292 None:intergenic
AACTCAGGTGGCAAACCTAC+AGG 0.457009 tig0018287:-11398 Msa1365420:CDS
TTCTCTGTGATATGACTCTT+CGG 0.457392 tig0018287:+12185 None:intergenic
ACTGAAGAGCCGGCTGCCTA+TGG 0.457767 tig0018287:-7982 Msa1365420:CDS
ACTGAAGAGCCAGCTGCCTA+TGG 0.458177 tig0018287:-4282 Msa1365420:CDS
GTCCCGGGTGGTCAACAACT+TGG 0.458789 tig0018287:-9955 Msa1365420:CDS
ATAATTGTTGTGAACGAATA+CGG 0.462451 tig0018287:-3880 Msa1365420:three_prime_UTR
TACGGGTGATATATGAAAAT+GGG 0.462774 tig0018287:-3862 Msa1365420:three_prime_UTR
TCAGTCCCACCAAATGCAAT+AGG 0.463249 tig0018287:+8000 None:intergenic
TTGTTCACGTCCTGGAACTC+AGG 0.465346 tig0018287:-11413 Msa1365420:CDS
TTGCATTAACAGTTGGATCA+AGG 0.466267 tig0018287:+4238 None:intergenic
ACAAAATTTGATGTAGAATC+GGG 0.467731 tig0018287:+4161 None:intergenic
ACTCATGTAGGTTGCAAGAA+AGG 0.468098 tig0018287:+11090 None:intergenic
CTACAATGGAAGATGGAGAA+TGG 0.469723 tig0018287:-13298 Msa1365420:exon
CATTTATCCCGAGGCAGCGC+AGG 0.470354 tig0018287:+9599 None:intergenic
TTTCTTAAGGACTCGGAAGT+AGG 0.471772 tig0018287:+11724 None:intergenic
GGGTGACAGTCAACATCTGC+TGG 0.473712 tig0018287:-9538 Msa1365420:CDS
TATGGAGAGCTGATATCAAT+TGG 0.477027 tig0018287:-7964 Msa1365420:CDS
GGATGGATCAATTATGGAAT+GGG 0.477988 tig0018287:-10564 Msa1365420:intron
CCAAGACGACCATTGCCAAT+GGG 0.478151 tig0018287:+13146 None:intergenic
AACTGCAGCTCTCAAATTGT+CGG 0.478299 tig0018287:-12704 Msa1365420:CDS
GGTGCAAGGTCCTCCACATA+AGG 0.480757 tig0018287:-13270 Msa1365420:CDS
ATAATGGAAGGAAGCTGTCC+TGG 0.483329 tig0018287:-11964 Msa1365420:CDS
TCAGTACCACCAAATGCAAT+TGG 0.485652 tig0018287:+4300 None:intergenic
CCCATTGGCAATGGTCGTCT+TGG 0.486952 tig0018287:-13146 Msa1365420:CDS
CTAATTGCTTGTTCACGTCC+TGG 0.488943 tig0018287:-11421 Msa1365420:CDS
CTATCAAAATCTATTTCATC+GGG 0.490402 tig0018287:-11644 Msa1365420:CDS
AAAACACTTGATTGTCTTGG+CGG 0.491492 tig0018287:-9879 Msa1365420:CDS
GAAATGAGACTACATTATAG+AGG 0.493386 tig0018287:-9464 Msa1365420:CDS
AAGGAAGCTGTCCTGGCAAA+AGG 0.494436 tig0018287:-11957 Msa1365420:CDS
TGGGCAAATGGTTGTGTGAA+AGG 0.495474 tig0018287:-9578 Msa1365420:CDS
GATAAGAAGCTTAGAGTTGA+AGG 0.495802 tig0018287:-11829 Msa1365420:CDS
CCTCGGGATAAATGGGCAAA+TGG 0.496290 tig0018287:-9590 Msa1365420:CDS
GTTACAGGAGATGAAGGTCC+CGG 0.498255 tig0018287:-9971 Msa1365420:intron
CATTATGTTACAGGAGATGA+AGG 0.498282 tig0018287:-9977 Msa1365420:intron
TTTGTCACTAGCACTTGGTC+GGG 0.500812 tig0018287:+12081 None:intergenic
GTCAACATCTGCTGGAAAGA+AGG 0.503287 tig0018287:-9530 Msa1365420:CDS
ATGGAGGATGTGCTGTGAAC+AGG 0.504751 tig0018287:+9810 None:intergenic
ATTTAATATCGCCAAGAAGT+TGG 0.504786 tig0018287:+12238 None:intergenic
CTTACTTCCTGCGCTGCCTC+GGG 0.508430 tig0018287:-9606 Msa1365420:CDS
TCGTCACTTGAATTCACTTG+TGG 0.511262 tig0018287:+11928 None:intergenic
GATAAAACACTTGATTGTCT+TGG 0.511687 tig0018287:-9882 Msa1365420:CDS
AAGGATTAAAAGCACGTGGC+GGG 0.511813 tig0018287:-9559 Msa1365420:CDS
ATCAGTTCTCCATAGGCAGC+TGG 0.512016 tig0018287:+4273 None:intergenic
GATGGCATCAGTCCAGTACT+TGG 0.512637 tig0018287:+13169 None:intergenic
ACTATCAAAATCTATTTCAT+CGG 0.514434 tig0018287:-11645 Msa1365420:CDS
ACTACCATTGACTGACAAAG+AGG 0.515252 tig0018287:+11040 None:intergenic
GGGTTCCACAAGTCCTTATG+TGG 0.515502 tig0018287:+13257 None:intergenic
CTCATGTAGGTTGCAAGAAA+GGG 0.516829 tig0018287:+11091 None:intergenic
ACTGCAGCTCTCAAATTGTC+GGG 0.517930 tig0018287:-12703 Msa1365420:CDS
ATTAGAAGCAAAATGCTCTC+TGG 0.518115 tig0018287:+12104 None:intergenic
GCCATTGAACCCAACAAATG+AGG 0.518175 tig0018287:+4008 None:intergenic
GATTTGATTCTCGATGAAGT+TGG 0.518466 tig0018287:+11505 None:intergenic
GGAGTGCCTATTGCATTTGG+TGG 0.518848 tig0018287:-8006 Msa1365420:CDS
ATTTGTTTGGCTTGTTTCCG+GGG 0.520272 tig0018287:-10339 Msa1365420:CDS
TTAGAGTTGAAGGTTCAGAT+TGG 0.523034 tig0018287:-11819 Msa1365420:CDS
CTGTATGCCACCCCAAATCA+TGG 0.524612 tig0018287:+13121 None:intergenic
CATCTGCATTTGCTAAACTT+GGG 0.525917 tig0018287:+13237 None:intergenic
GAGGAAATGTGATCAAATAG+TGG 0.526093 tig0018287:+11059 None:intergenic
TCCAGATCTTTGTAAAGCTG+TGG 0.528714 tig0018287:-10293 Msa1365420:CDS
CTTTGTCACTAGCACTTGGT+CGG 0.530908 tig0018287:+12080 None:intergenic
GACCCTGAGCAGGAAGCTGT+TGG 0.531476 tig0018287:-9857 Msa1365420:CDS
GCATCAGTCCAGTACTTGGC+AGG 0.533349 tig0018287:+13173 None:intergenic
TCGATATTTATTGTGTGCCC+CGG 0.534754 tig0018287:+10322 None:intergenic
TCACTTGAATTCACTTGTGG+AGG 0.535640 tig0018287:+11931 None:intergenic
TAATTGTTGTGAACGAATAC+GGG 0.535834 tig0018287:-3879 Msa1365420:three_prime_UTR
GGGATGGATCAATTATGGAA+TGG 0.536443 tig0018287:-10565 Msa1365420:CDS
GAAGGTGATCTGCATGAAGT+TGG 0.538771 tig0018287:-9512 Msa1365420:CDS
TGAAGATTTATGTTCAAGTG+TGG 0.542997 tig0018287:+11131 None:intergenic
TGGACTGATGCCATCCCCAT+TGG 0.544755 tig0018287:-13161 Msa1365420:CDS
ACCAAGACGACCATTGCCAA+TGG 0.545373 tig0018287:+13145 None:intergenic
ACGACCATTGCCAATGGGGA+TGG 0.551444 tig0018287:+13151 None:intergenic
AATTGATATCAGCTCTCCAT+AGG 0.553233 tig0018287:+7966 None:intergenic
CTTTGTTCCATATACCCTGT+AGG 0.553516 tig0018287:+11383 None:intergenic
ACACTATGGACTGGTATACC+TGG 0.553528 tig0018287:-12808 Msa1365420:CDS
GGAAGGAAGAGAATAGAGAG+AGG 0.558537 tig0018287:+13344 None:intergenic
GAGTGCCTATTGCATTTGGT+GGG 0.560113 tig0018287:-8005 Msa1365420:CDS
AACCAACAGCTTCCTGCTCA+GGG 0.561258 tig0018287:+9855 None:intergenic
AATTCAAGTGACGAACCAAA+AGG 0.564022 tig0018287:-11919 Msa1365420:CDS
GTCCTCCACATAAGGACTTG+TGG 0.569172 tig0018287:-13262 Msa1365420:CDS
GATTATAGTCTAATTAAAAG+AGG 0.572479 tig0018287:-10271 Msa1365420:intron
GGAGAGCTGATATCAATTGG+CGG 0.574098 tig0018287:-7961 Msa1365420:CDS
GATGCCATCCCCATTGGCAA+TGG 0.574840 tig0018287:-13155 Msa1365420:CDS
CCATTGAACCCAACAAATGA+GGG 0.574848 tig0018287:+4009 None:intergenic
AAGTTCGCGTCAATTTGGAA+TGG 0.575095 tig0018287:+9791 None:intergenic
TTCGCGTCAATTTGGAATGG+AGG 0.575642 tig0018287:+9794 None:intergenic
AACAAAAGCTCCACAACGGA+AGG 0.576567 tig0018287:+11463 None:intergenic
CACTTGAATTCACTTGTGGA+GGG 0.580247 tig0018287:+11932 None:intergenic
TTTCCAAGTTGTTGACCACC+CGG 0.580247 tig0018287:+9952 None:intergenic
TGATGTTTATGCTCGTCACT+TGG 0.581330 tig0018287:-11671 Msa1365420:CDS
AATTGATATCAGTTCTCCAT+AGG 0.583989 tig0018287:+4266 None:intergenic
ATCAGCTCTCCATAGGCAGC+CGG 0.584190 tig0018287:+7973 None:intergenic
TGGAGAACTGATATCAATTG+GGG 0.585854 tig0018287:-4262 Msa1365420:CDS
AAAACTTTGTCACTAGCACT+TGG 0.586811 tig0018287:+12076 None:intergenic
GGAGTGCCAATTGCATTTGG+TGG 0.589270 tig0018287:-4306 Msa1365420:CDS
CGTCTTGGTGCCATGATTTG+GGG 0.589784 tig0018287:-13131 Msa1365420:CDS
ATTTGGTGGGACTGAAGAGC+CGG 0.598688 tig0018287:-7992 Msa1365420:CDS
ACAGAGGACACACTATGGAC+TGG 0.606130 tig0018287:-12817 Msa1365420:intron
AGTAGTGAGATGAATTGGGA+AGG 0.606317 tig0018287:+13327 None:intergenic
CAATGGTAGTAAAACTGCAA+AGG 0.610567 tig0018287:-11027 Msa1365420:intron
GTCTTGAAAATATCAAAATG+AGG 0.612445 tig0018287:+3819 None:intergenic
CAACTTGGAAAGCTGCATTG+TGG 0.614081 tig0018287:-9940 Msa1365420:CDS
TTACAGGAGATGAAGGTCCC+GGG 0.615350 tig0018287:-9970 Msa1365420:intron
ACTGTAAATGATAATGACCC+CGG 0.624851 tig0018287:+12042 None:intergenic
CATGCCGATGATGTACATCT+GGG 0.627526 tig0018287:+10368 None:intergenic
TTCCAAGTTGTTGACCACCC+GGG 0.628756 tig0018287:+9953 None:intergenic
TGATGAAGATCCTTCCGTTG+TGG 0.632061 tig0018287:-11473 Msa1365420:CDS
AAATGAGACTACATTATAGA+GGG 0.633004 tig0018287:-9463 Msa1365420:CDS
ACTCAGGTGGCAAACCTACA+GGG 0.633425 tig0018287:-11397 Msa1365420:CDS
TTCCACAAGTCCTTATGTGG+AGG 0.633472 tig0018287:+13260 None:intergenic
CTTGGTGCCATGATTTGGGG+TGG 0.637211 tig0018287:-13128 Msa1365420:CDS
AGGACCCAGATGTACATCAT+CGG 0.638301 tig0018287:-10372 Msa1365420:CDS
GTGGCTCTTGACACTCATGT+AGG 0.641147 tig0018287:+11078 None:intergenic
AGTGTGTTACATACTTCACC+AGG 0.642894 tig0018287:+12676 None:intergenic
TGTAGGTTGCAAGAAAGGGA+CGG 0.643834 tig0018287:+11095 None:intergenic
GGAGAATGGATTATGGTGCA+AGG 0.644352 tig0018287:-13284 Msa1365420:CDS
ACTAACATATCTCAATTGAG+AGG 0.644837 tig0018287:-11541 Msa1365420:CDS
TTCACGTCCTGGAACTCAGG+TGG 0.645681 tig0018287:-11410 Msa1365420:CDS
AACATATCTCAATTGAGAGG+TGG 0.647631 tig0018287:-11538 Msa1365420:CDS
TAATGACCCCGGTTTGCTGG+TGG 0.650534 tig0018287:+12053 None:intergenic
CCATTTGCCCATTTATCCCG+AGG 0.650971 tig0018287:+9590 None:intergenic
CAAGACGACCATTGCCAATG+GGG 0.655150 tig0018287:+13147 None:intergenic
AGGATTAAAAGCACGTGGCG+GGG 0.657776 tig0018287:-9558 Msa1365420:CDS
GCAGCGCAGGAAGTAAGTAG+AGG 0.661819 tig0018287:+9612 None:intergenic
ACTACATTATAGAGGGAACA+AGG 0.668510 tig0018287:-9456 Msa1365420:intron
GCTTGTTCAAAGCACAACGA+AGG 0.677962 tig0018287:-9636 Msa1365420:CDS
TCTGAAGTTCTACAGCTCAA+CGG 0.681667 tig0018287:-13098 Msa1365420:intron
AAAGGATTAAAAGCACGTGG+CGG 0.688457 tig0018287:-9560 Msa1365420:CDS
GCAAATTACATCACAATACG+CGG 0.694354 tig0018287:-12008 Msa1365420:CDS
TTGAAACAAAAGCTCCACAA+CGG 0.707270 tig0018287:+11459 None:intergenic
GTGAAAGGATTAAAAGCACG+TGG 0.709520 tig0018287:-9563 Msa1365420:CDS
GGAGAACTGATATCAATTGG+GGG 0.711885 tig0018287:-4261 Msa1365420:CDS
CAGGAGATGAAGGTCCCGGG+TGG 0.726183 tig0018287:-9967 Msa1365420:CDS
GTGTTACATACTTCACCAGG+AGG 0.744967 tig0018287:+12679 None:intergenic
AAATGGACCATCAAACGACG+AGG 0.768244 tig0018287:+11774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATAATTAAAAAAT+AGG - tig0018287:11556-11575 Msa1365420:CDS 0.0%
!!! AATTTTTATTTTTTTTTTAA+TGG + tig0018287:12590-12609 None:intergenic 0.0%
!! TATATATATATATATAATGC+TGG + tig0018287:4543-4562 None:intergenic 10.0%
!!! ATGTATACTAAATTTAATTT+TGG + tig0018287:8668-8687 None:intergenic 10.0%
!! ATATTATATTATAAGAGAAA+TGG - tig0018287:10584-10603 Msa1365420:CDS 10.0%
!!! AGATTTTTTTTTTTTTTTTG+TGG - tig0018287:10957-10976 Msa1365420:intron 10.0%
!! TAATTAAAAAATAGGAAAAT+TGG - tig0018287:11564-11583 Msa1365420:CDS 10.0%
!! TATATATAGATATAAAAAAG+GGG + tig0018287:12552-12571 None:intergenic 10.0%
!! ATTTATAGAATTAAGATATC+AGG - tig0018287:4229-4248 Msa1365420:CDS 15.0%
!! TTTATAGAATTAAGATATCA+GGG - tig0018287:4230-4249 Msa1365420:CDS 15.0%
!! TCATTCAAAATAAAAAAAAC+AGG + tig0018287:4909-4928 None:intergenic 15.0%
!!! GTTTTTTTTATTTTGAATGA+AGG - tig0018287:4909-4928 Msa1365420:intron 15.0%
!! AGCAAAAATAAAATATAATG+TGG - tig0018287:5032-5051 Msa1365420:intron 15.0%
!! GCAAAAATAAAATATAATGT+GGG - tig0018287:5033-5052 Msa1365420:intron 15.0%
!!! AAAAATCAAATAATAATGGA+AGG - tig0018287:5198-5217 Msa1365420:intron 15.0%
!! GTGATAAATAAATATGTAAA+AGG - tig0018287:5866-5885 Msa1365420:intron 15.0%
!! TAAATCTTCAAATGAATTAT+TGG - tig0018287:6056-6075 Msa1365420:intron 15.0%
!!! TTAAGATTTTATTGGAAAAT+TGG + tig0018287:7851-7870 None:intergenic 15.0%
!!! AATTTTCCAATAAAATCTTA+AGG - tig0018287:7850-7869 Msa1365420:intron 15.0%
!! TTAACAATAACAACATATTA+GGG + tig0018287:8262-8281 None:intergenic 15.0%
!! TTTAACAATAACAACATATT+AGG + tig0018287:8263-8282 None:intergenic 15.0%
!! TTAAATTTAGTATACATATG+AGG - tig0018287:8671-8690 Msa1365420:intron 15.0%
!!! ATGATTTTTTTCTTTTTTAG+AGG - tig0018287:8708-8727 Msa1365420:intron 15.0%
!!! TGATTTTTTTCTTTTTTAGA+GGG - tig0018287:8709-8728 Msa1365420:intron 15.0%
!! TAAACAGTTTCAATATAATA+TGG + tig0018287:9481-9500 None:intergenic 15.0%
!! TATTAAATTATTACTGTTCT+GGG - tig0018287:9555-9574 Msa1365420:CDS 15.0%
!!! AAAGATGAATGAATATTTTA+AGG - tig0018287:9816-9835 Msa1365420:CDS 15.0%
!! TATCTTATTACAAAAGAATA+GGG + tig0018287:9999-10018 None:intergenic 15.0%
!! ATATCTTATTACAAAAGAAT+AGG + tig0018287:10000-10019 None:intergenic 15.0%
!! TACATTTGATATATGAAAAA+TGG - tig0018287:10439-10458 Msa1365420:intron 15.0%
!! ACATTTGATATATGAAAAAT+GGG - tig0018287:10440-10459 Msa1365420:intron 15.0%
!!! GTATGCTTTTTAAATAACAA+AGG + tig0018287:4310-4329 None:intergenic 20.0%
!!! TTAAAAAGCATACTAATATG+AGG - tig0018287:4317-4336 Msa1365420:CDS 20.0%
!! ATATATATATAATGCTGGAA+GGG + tig0018287:4538-4557 None:intergenic 20.0%
!! TATATATATATAATGCTGGA+AGG + tig0018287:4539-4558 None:intergenic 20.0%
!! CAAGAAAAATTGAAATTACA+TGG + tig0018287:4750-4769 None:intergenic 20.0%
!! TTCAAAATAAAAAAAACAGG+AGG + tig0018287:4906-4925 None:intergenic 20.0%
!! ATTATCATTTACAGTATCTT+TGG - tig0018287:5140-5159 Msa1365420:intron 20.0%
!! CAGCAAAAATCAAATAATAA+TGG - tig0018287:5194-5213 Msa1365420:intron 20.0%
!! ACTATCAAAATCTATTTCAT+CGG - tig0018287:5529-5548 Msa1365420:intron 20.0%
!! ATATTTATTTATCACTAGAG+GGG + tig0018287:5861-5880 None:intergenic 20.0%
!! CATATTTATTTATCACTAGA+GGG + tig0018287:5862-5881 None:intergenic 20.0%
!! ACATATTTATTTATCACTAG+AGG + tig0018287:5863-5882 None:intergenic 20.0%
!!! TAGTTATCCTAATTTTTTCT+TGG - tig0018287:6490-6509 Msa1365420:intron 20.0%
!!! AAAATTTTGGATTGTAAACT+AGG - tig0018287:6728-6747 Msa1365420:intron 20.0%
!!! AAATTTTGGATTGTAAACTA+GGG - tig0018287:6729-6748 Msa1365420:intron 20.0%
!!! ATAAGGTGTTAAATTTAACA+TGG + tig0018287:6758-6777 None:intergenic 20.0%
!! GATTATAGTCTAATTAAAAG+AGG - tig0018287:6903-6922 Msa1365420:intron 20.0%
!! TTATACTACATTCTCAAATT+AGG - tig0018287:7067-7086 Msa1365420:intron 20.0%
!! AAGTTTACTCGTATAATAAT+TGG - tig0018287:7765-7784 Msa1365420:intron 20.0%
!!! GGAAAACAGTTATATTTTTA+GGG + tig0018287:7830-7849 None:intergenic 20.0%
!!! TGGAAAACAGTTATATTTTT+AGG + tig0018287:7831-7850 None:intergenic 20.0%
!!! TTTTTGATTTGATTTGAAGT+TGG - tig0018287:8173-8192 Msa1365420:intron 20.0%
!!! ATATGGAATTATGATTTTGA+AGG + tig0018287:8209-8228 None:intergenic 20.0%
!! TAACAATAACAACATATTAG+GGG + tig0018287:8261-8280 None:intergenic 20.0%
!!! ATGATTTTATTTGAATGTCA+TGG - tig0018287:8487-8506 Msa1365420:intron 20.0%
!! ATAAAATTTGATGTAGAATC+TGG + tig0018287:9316-9335 None:intergenic 20.0%
!! GTATTAAATTATTACTGTTC+TGG - tig0018287:9554-9573 Msa1365420:CDS 20.0%
!! ATTAAATTATTACTGTTCTG+GGG - tig0018287:9556-9575 Msa1365420:CDS 20.0%
!! TAAAATAACAGTATCCATTA+CGG + tig0018287:9900-9919 None:intergenic 20.0%
!!! GGATACTGTTATTTTAAAAT+TGG - tig0018287:9904-9923 Msa1365420:CDS 20.0%
!!! AACTGATTTAACAAAATGAT+GGG + tig0018287:10028-10047 None:intergenic 20.0%
!!! ATTTTTGTTCTTTTACTTCA+TGG - tig0018287:10260-10279 Msa1365420:intron 20.0%
!! AAATATATTTCATCTTTCTG+TGG - tig0018287:10378-10397 Msa1365420:CDS 20.0%
!! TCATCAATTTATATAGTTTG+TGG - tig0018287:10507-10526 Msa1365420:intron 20.0%
!! TTATATTATAAGAGAAATGG+AGG - tig0018287:10587-10606 Msa1365420:CDS 20.0%
!! TGAGCTAAAAATTAAGTTTA+AGG - tig0018287:10624-10643 Msa1365420:CDS 20.0%
!! TGAAATTATACGTTTAAACT+TGG + tig0018287:10653-10672 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGGTGTT+TGG - tig0018287:10964-10983 Msa1365420:intron 20.0%
!!! TTTTTTTTTTTGTGGTGTTT+GGG - tig0018287:10965-10984 Msa1365420:intron 20.0%
!! AATATATGATTGTTATGTGA+TGG - tig0018287:11139-11158 Msa1365420:CDS 20.0%
!! TTAGACATTTGATATATATG+AGG - tig0018287:11312-11331 Msa1365420:intron 20.0%
!!! TTTAACTCATTTTCAACAAA+TGG + tig0018287:11431-11450 None:intergenic 20.0%
!! TAATTGTTAAGAGAACAAAA+AGG - tig0018287:11464-11483 Msa1365420:CDS 20.0%
!! AAAAGGAAAAAAAAGAGTTA+TGG - tig0018287:11481-11500 Msa1365420:CDS 20.0%
!!! ATGTTGATAATAGAAAAAGA+TGG - tig0018287:11677-11696 Msa1365420:CDS 20.0%
!!! TCATTCCTAATATTTTTTTG+TGG - tig0018287:11812-11831 Msa1365420:CDS 20.0%
!! AACAATGCATATTATATACA+TGG + tig0018287:11860-11879 None:intergenic 20.0%
!!! TTTTTCTTTTCTTTTTGTCT+TGG - tig0018287:12414-12433 Msa1365420:intron 20.0%
!!! ATTTCAGTATATGTGTATTT+TGG - tig0018287:12837-12856 Msa1365420:intron 20.0%
! AAAAAGTAGTGAGATGAATT+GGG + tig0018287:3854-3873 None:intergenic 25.0%
! AAAAAAGTAGTGAGATGAAT+TGG + tig0018287:3855-3874 None:intergenic 25.0%
!!! TCACTACTTTTTTTCTACAA+TGG - tig0018287:3862-3881 Msa1365420:three_prime_UTR 25.0%
!!! TTTTTTTCTACAATGGAAGA+TGG - tig0018287:3869-3888 Msa1365420:three_prime_UTR 25.0%
!!! TTCAATTTTTTTCTTCACAG+AGG - tig0018287:4341-4360 Msa1365420:intron 25.0%
!!! CTATTTTTTAGACTGATATC+AGG - tig0018287:4685-4704 Msa1365420:intron 25.0%
! TATTTATATATCATGCTCCT+TGG + tig0018287:4720-4739 None:intergenic 25.0%
!! TATATCTTTAGTAATGGAGT+GGG + tig0018287:4836-4855 None:intergenic 25.0%
!! ATATATCTTTAGTAATGGAG+TGG + tig0018287:4837-4856 None:intergenic 25.0%
! CTCCATTACTAAAGATATAT+TGG - tig0018287:4837-4856 Msa1365420:intron 25.0%
! CACCAATATATCTTTAGTAA+TGG + tig0018287:4842-4861 None:intergenic 25.0%
!! AAAAGGAGTTATACATGTTT+TGG - tig0018287:5320-5339 Msa1365420:intron 25.0%
!!! CACAAACTTCATTTTTCTTA+AGG + tig0018287:5466-5485 None:intergenic 25.0%
! CTATCAAAATCTATTTCATC+GGG - tig0018287:5530-5549 Msa1365420:intron 25.0%
!! AAAAGTTCAAAGACTGTTTT+AGG - tig0018287:5570-5589 Msa1365420:intron 25.0%
!!! TGTTTTAGGAAAACCTATTT+TGG - tig0018287:5584-5603 Msa1365420:intron 25.0%
!! ATTTTCTCTTCATCCAAAAT+AGG + tig0018287:5600-5619 None:intergenic 25.0%
! TATTTATTTATCACTAGAGG+GGG + tig0018287:5860-5879 None:intergenic 25.0%
! TTGACATTCTATGTTAGAAA+GGG - tig0018287:6205-6224 Msa1365420:intron 25.0%
! TTAACATACACCTGATTAAT+AGG + tig0018287:6280-6299 None:intergenic 25.0%
! ACACAATTACATTTAATTGG+AGG + tig0018287:6322-6341 None:intergenic 25.0%
! CACACACAATTACATTTAAT+TGG + tig0018287:6325-6344 None:intergenic 25.0%
!!! TGTGTGTTTTAAATACAAGA+AGG - tig0018287:6339-6358 Msa1365420:intron 25.0%
!!! GTTTTAAATACAAGAAGGAT+AGG - tig0018287:6344-6363 Msa1365420:intron 25.0%
!!! TAGAAACTAGTTTCTAGTAT+TGG + tig0018287:6472-6491 None:intergenic 25.0%
!! CTGATCTTCAATGAAAATTT+TGG - tig0018287:6715-6734 Msa1365420:intron 25.0%
!! AATTTTGGATTGTAAACTAG+GGG - tig0018287:6730-6749 Msa1365420:intron 25.0%
!! TAACACCTTATTTATTTGAC+AGG - tig0018287:6767-6786 Msa1365420:intron 25.0%
! ACTATATTCATTAAAACCTC+CGG - tig0018287:7019-7038 Msa1365420:intron 25.0%
! GATAAAAAAGATACAACCTT+AGG + tig0018287:7132-7151 None:intergenic 25.0%
! TCTATAATGTAGTCTCATTT+CGG + tig0018287:7711-7730 None:intergenic 25.0%
! AAATGAGACTACATTATAGA+GGG - tig0018287:7711-7730 Msa1365420:intron 25.0%
!!! TTTTACAATTTGTTACGTAC+AGG - tig0018287:7886-7905 Msa1365420:CDS 25.0%
! AACAATTGGATTGAAACATT+TGG - tig0018287:8569-8588 Msa1365420:intron 25.0%
! TTGCAATGTTTAGAAAGTTT+GGG - tig0018287:8641-8660 Msa1365420:intron 25.0%
!!! TTATGTAGTTTTGAAGACAT+GGG + tig0018287:9063-9082 None:intergenic 25.0%
!!! ATTATGTAGTTTTGAAGACA+TGG + tig0018287:9064-9083 None:intergenic 25.0%
!! TATGTGATGATTTTGTTGAA+TGG - tig0018287:9144-9163 Msa1365420:intron 25.0%
!!! CAATGTATAGTTTAGTTTGA+AGG + tig0018287:9287-9306 None:intergenic 25.0%
! AAGAAATCGTAAATTTACCT+CGG + tig0018287:9343-9362 None:intergenic 25.0%
!! ATACATGAAATAGAGTACTA+TGG + tig0018287:9701-9720 None:intergenic 25.0%
! GTATTGTTCTTATAAAGTCT+TGG - tig0018287:9717-9736 Msa1365420:intron 25.0%
! AAATATTCATTCATCTTTCG+AGG + tig0018287:9814-9833 None:intergenic 25.0%
!! TTTAGCTTATAAAACCGTAA+TGG - tig0018287:9883-9902 Msa1365420:CDS 25.0%
!! GAACTGATTTAACAAAATGA+TGG + tig0018287:10029-10048 None:intergenic 25.0%
!!! TGTTTGACAATTTTAACGTT+TGG + tig0018287:10719-10738 None:intergenic 25.0%
! TTATCTCATATGGAGTATAT+TGG + tig0018287:10810-10829 None:intergenic 25.0%
! AGTTTACCAAAGAAAATTAC+AGG - tig0018287:10857-10876 Msa1365420:intron 25.0%
!!! TTTTTTTTTTGTGGTGTTTG+GGG - tig0018287:10966-10985 Msa1365420:intron 25.0%
! GACAATGCATAATGTATATA+AGG + tig0018287:11004-11023 None:intergenic 25.0%
!!! TAGTTTTTTTCCCATACATA+TGG - tig0018287:11247-11266 Msa1365420:intron 25.0%
!! CAACTGAGAGTTTTTAAATT+AGG + tig0018287:11750-11769 None:intergenic 25.0%
!!! TTCCTAATATTTTTTTGTGG+TGG - tig0018287:11815-11834 Msa1365420:CDS 25.0%
!!! TAATATTTTTTTGTGGTGGT+CGG - tig0018287:11819-11838 Msa1365420:CDS 25.0%
! TGCATATTATATACATGGTT+TGG + tig0018287:11855-11874 None:intergenic 25.0%
! TGTTCTCCTATATTTATACT+AGG + tig0018287:11907-11926 None:intergenic 25.0%
!!! ACGGTTTTTTTTGTTCATTT+TGG + tig0018287:11934-11953 None:intergenic 25.0%
!!! GGTTTTGTTTTTCCTTTTTT+CGG - tig0018287:12479-12498 Msa1365420:intron 25.0%
! ATATAAAAAAGGGGAGAAAA+TGG + tig0018287:12543-12562 None:intergenic 25.0%
! AAGAAAAAACAAGGTTGAAA+GGG + tig0018287:12687-12706 None:intergenic 25.0%
! TGAAATACAAACAAAGCAAA+AGG + tig0018287:12823-12842 None:intergenic 25.0%
!!! TATATGTGTATTTTGGTGAA+TGG - tig0018287:12844-12863 Msa1365420:intron 25.0%
! ACAAAATTTGATGTAGAATC+GGG + tig0018287:13016-13035 None:intergenic 25.0%
! CACAAAATTTGATGTAGAAT+CGG + tig0018287:13017-13036 None:intergenic 25.0%
! ATAATTGTTGTGAACGAATA+CGG - tig0018287:13294-13313 Msa1365420:CDS 25.0%
CTAGAAAAAGTAACCTTCAA+GGG + tig0018287:3980-3999 None:intergenic 30.0%
ATACTGAAAGTCTTCAAGAT+TGG + tig0018287:4130-4149 None:intergenic 30.0%
GAATTAAGATATCAGGGATA+AGG - tig0018287:4236-4255 Msa1365420:CDS 30.0%
GGAGCATGATATATAAATAG+AGG - tig0018287:4721-4740 Msa1365420:intron 30.0%
CATATTAGTGTTCTCATTCA+TGG - tig0018287:4793-4812 Msa1365420:intron 30.0%
! ATATCTTTAGTAATGGAGTG+GGG + tig0018287:4835-4854 None:intergenic 30.0%
ATATATTGGTGCATGAGTTA+AGG - tig0018287:4851-4870 Msa1365420:intron 30.0%
ATTTAATATCGCCAAGAAGT+TGG + tig0018287:4939-4958 None:intergenic 30.0%
ATATCACAGAGAACTTGATT+TGG - tig0018287:4999-5018 Msa1365420:intron 30.0%
ATGAAGCTCAGTAATGAAAA+AGG - tig0018287:5303-5322 Msa1365420:intron 30.0%
!! CTTCATTTTTCTTAAGGACT+CGG + tig0018287:5460-5479 None:intergenic 30.0%
ACTAACATATCTCAATTGAG+AGG - tig0018287:5633-5652 Msa1365420:intron 30.0%
TCTATTGCTTCTAGATTCTA+AGG - tig0018287:5907-5926 Msa1365420:intron 30.0%
CTTAGAGTTTCTATATGGAT+AGG - tig0018287:5933-5952 Msa1365420:intron 30.0%
TGAAGATTTATGTTCAAGTG+TGG + tig0018287:6046-6065 None:intergenic 30.0%
CTTGACATTCTATGTTAGAA+AGG - tig0018287:6204-6223 Msa1365420:intron 30.0%
ATTCTATGTTAGAAAGGGAT+TGG - tig0018287:6210-6229 Msa1365420:intron 30.0%
TTAATTGGAGGTAATTGCTT+TGG + tig0018287:6310-6329 None:intergenic 30.0%
ATACAAGAAGGATAGGAATT+AGG - tig0018287:6351-6370 Msa1365420:intron 30.0%
!!! CCAAAATCTGTTTTTGACAA+GGG + tig0018287:6517-6536 None:intergenic 30.0%
! CCTTGTCAAAAACAGATTTT+GGG - tig0018287:6515-6534 Msa1365420:intron 30.0%
TTCCTCCTATAAAAATTGCT+AGG - tig0018287:6588-6607 Msa1365420:intron 30.0%
TCCTCCTATAAAAATTGCTA+GGG - tig0018287:6589-6608 Msa1365420:intron 30.0%
TTCAGCCTGTCAAATAAATA+AGG + tig0018287:6775-6794 None:intergenic 30.0%
CTAAAATAACTACTACGTCA+GGG + tig0018287:6961-6980 None:intergenic 30.0%
CTATATTCATTAAAACCTCC+GGG - tig0018287:7020-7039 Msa1365420:intron 30.0%
CATTTCTTGCATTATGTTAC+AGG - tig0018287:7188-7207 Msa1365420:intron 30.0%
GATAAAACACTTGATTGTCT+TGG - tig0018287:7292-7311 Msa1365420:intron 30.0%
!! CTCATAATTTTGAGTCACAT+TGG - tig0018287:7463-7482 Msa1365420:intron 30.0%
!!! AATTCTGGTTTTTTGACCAA+AGG + tig0018287:7688-7707 None:intergenic 30.0%
GAAATGAGACTACATTATAG+AGG - tig0018287:7710-7729 Msa1365420:intron 30.0%
ATTATACGAGTAAACTTTCC+CGG + tig0018287:7762-7781 None:intergenic 30.0%
! CACGTTCCTTAAGATTTTAT+TGG + tig0018287:7859-7878 None:intergenic 30.0%
ATGGGATAGAATATACTCTA+GGG - tig0018287:8020-8039 Msa1365420:CDS 30.0%
TTCCCTATCTGTTATGAAAT+GGG - tig0018287:8122-8141 Msa1365420:intron 30.0%
! CAATGATAGTGACAACAATA+TGG + tig0018287:8226-8245 None:intergenic 30.0%
TGTTAAATATTTGCAAGCCA+TGG - tig0018287:8276-8295 Msa1365420:intron 30.0%
GTTAAATATTTGCAAGCCAT+GGG - tig0018287:8277-8296 Msa1365420:intron 30.0%
GACGAGAACAATCAAAATTT+AGG + tig0018287:8384-8403 None:intergenic 30.0%
!!! ATTTTGATTGTTCTCGTCTA+TGG - tig0018287:8386-8405 Msa1365420:intron 30.0%
!! TTTTGATTGTTCTCGTCTAT+GGG - tig0018287:8387-8406 Msa1365420:intron 30.0%
CATTGAATTTGTCAGAATCA+TGG - tig0018287:8457-8476 Msa1365420:intron 30.0%
GTTGCAATGTTTAGAAAGTT+TGG - tig0018287:8640-8659 Msa1365420:intron 30.0%
AATGATCTTTGCAACAACTT+TGG + tig0018287:8932-8951 None:intergenic 30.0%
CAATAAACAAAGGAGGAAAA+GGG + tig0018287:8986-9005 None:intergenic 30.0%
ACAATAAACAAAGGAGGAAA+AGG + tig0018287:8987-9006 None:intergenic 30.0%
ATCATCACATACTGAAACAA+AGG + tig0018287:9135-9154 None:intergenic 30.0%
ATATATATGACTGTGAATGC+TGG - tig0018287:9382-9401 Msa1365420:intron 30.0%
ACGAGTTAGAATGTATGAAA+TGG + tig0018287:9443-9462 None:intergenic 30.0%
GTTTATTACTCTGAACTTAG+AGG - tig0018287:9496-9515 Msa1365420:CDS 30.0%
! TTTAAAATTGGTATCCCCAT+AGG - tig0018287:9916-9935 Msa1365420:CDS 30.0%
AAAAGAATAGGGAAGTTTCT+TGG + tig0018287:9988-10007 None:intergenic 30.0%
! TTTTGTTAAATCAGTTCACG+TGG - tig0018287:10032-10051 Msa1365420:intron 30.0%
ATTATGGAAAGGAAGTTGTT+TGG + tig0018287:10204-10223 None:intergenic 30.0%
ACATTCATCTCATGGAATTA+TGG + tig0018287:10220-10239 None:intergenic 30.0%
TAACTATGACATTCATCTCA+TGG + tig0018287:10228-10247 None:intergenic 30.0%
TATTATAAGAGAAATGGAGG+TGG - tig0018287:10590-10609 Msa1365420:CDS 30.0%
! TTTAACTTCATGAAACAACG+AGG + tig0018287:10776-10795 None:intergenic 30.0%
! GCTGGAAATTTTATCTCATA+TGG + tig0018287:10820-10839 None:intergenic 30.0%
AGATAAAATTTCCAGCATAC+TGG - tig0018287:10824-10843 Msa1365420:intron 30.0%
TTGATATTATACCAGTATGC+TGG + tig0018287:10838-10857 None:intergenic 30.0%
! GAATGTCACTTGAAATTGTA+TGG + tig0018287:10885-10904 None:intergenic 30.0%
ATATAGGTGATAAAAGTCAG+TGG + tig0018287:10907-10926 None:intergenic 30.0%
TCGCTACAAAGTTCAAATAT+AGG + tig0018287:10923-10942 None:intergenic 30.0%
AAGTAATCAGTACATCTTTC+AGG + tig0018287:11191-11210 None:intergenic 30.0%
! CTCATTTTCAACAAATGGAT+AGG + tig0018287:11426-11445 None:intergenic 30.0%
GGAAAAAAAAGAGTTATGGA+AGG - tig0018287:11485-11504 Msa1365420:CDS 30.0%
AAATAGGAAAATTGGATGTG+TGG - tig0018287:11572-11591 Msa1365420:CDS 30.0%
! ACTTAGACATTTTAAGCCAT+GGG + tig0018287:11630-11649 None:intergenic 30.0%
! AACTTAGACATTTTAAGCCA+TGG + tig0018287:11631-11650 None:intergenic 30.0%
! AATTTAGCTTCAACTCAAAC+CGG - tig0018287:11651-11670 Msa1365420:CDS 30.0%
TTTCTATTATCAACATGTGC+CGG + tig0018287:11673-11692 None:intergenic 30.0%
GACCACCACAAAAAAATATT+AGG + tig0018287:11820-11839 None:intergenic 30.0%
!!! AATATTTTTTTGTGGTGGTC+GGG - tig0018287:11820-11839 Msa1365420:CDS 30.0%
CTCACTCCTAGTATAAATAT+AGG - tig0018287:11898-11917 Msa1365420:CDS 30.0%
ATAAAGCAAAACTCTTAGCT+TGG - tig0018287:12187-12206 Msa1365420:CDS 30.0%
! TTCTTTTCTTTTTGTCTTGG+TGG - tig0018287:12417-12436 Msa1365420:intron 30.0%
AGAATACAAGATACACCATA+AGG + tig0018287:12519-12538 None:intergenic 30.0%
GAAGAAAAAACAAGGTTGAA+AGG + tig0018287:12688-12707 None:intergenic 30.0%
GTTGTGATGAAGAAAAAACA+AGG + tig0018287:12696-12715 None:intergenic 30.0%
TCAATAGCAGTCTTAACTAT+TGG - tig0018287:12737-12756 Msa1365420:CDS 30.0%
AATTGATATCAGTTCTCCAT+AGG + tig0018287:12911-12930 None:intergenic 30.0%
TATGGAGAACTGATATCAAT+TGG - tig0018287:12910-12929 Msa1365420:intron 30.0%
ATGGAGAACTGATATCAATT+GGG - tig0018287:12911-12930 Msa1365420:intron 30.0%
! CATCAAATTTTGTGATGTTC+AGG - tig0018287:13023-13042 Msa1365420:intron 30.0%
GAGGGCTGTATATATATAAA+AGG + tig0018287:13079-13098 None:intergenic 30.0%
GTGGTATCTCATAAAATTGA+GGG + tig0018287:13097-13116 None:intergenic 30.0%
TGTGGTATCTCATAAAATTG+AGG + tig0018287:13098-13117 None:intergenic 30.0%
TAGAATGTAATCAAGCAATG+TGG + tig0018287:13116-13135 None:intergenic 30.0%
TGAAAGAAAGTCTGATCAAA+AGG + tig0018287:13196-13215 None:intergenic 30.0%
TAATTGTTGTGAACGAATAC+GGG - tig0018287:10422-10441 Msa1365420:intron 30.0%
ATACGGGTGATATATGAAAA+TGG - tig0018287:13311-13330 Msa1365420:exon 30.0%
TACGGGTGATATATGAAAAT+GGG - tig0018287:13312-13331 Msa1365420:exon 30.0%
ATCAAAATGAGGAACATAGA+AGG + tig0018287:13347-13366 None:intergenic 30.0%
! CATCTGCATTTGCTAAACTT+GGG + tig0018287:3940-3959 None:intergenic 35.0%
! TCATCTGCATTTGCTAAACT+TGG + tig0018287:3941-3960 None:intergenic 35.0%
CCTAGAAAAAGTAACCTTCA+AGG + tig0018287:3981-4000 None:intergenic 35.0%
!!! CCTTGAAGGTTACTTTTTCT+AGG - tig0018287:3978-3997 Msa1365420:exon 35.0%
AAACACTCACTTCTTGCTTT+CGG - tig0018287:4102-4121 Msa1365420:intron 35.0%
TATTCGTAGTGTTTCCTCTA+TGG + tig0018287:4276-4295 None:intergenic 35.0%
! TTCTGTCATCGACAAGTTTT+CGG + tig0018287:4434-4453 None:intergenic 35.0%
ATATCAGGAGTTAACAACCA+AGG - tig0018287:4700-4719 Msa1365420:intron 35.0%
! GACTTCACACATTTTAGACA+AGG + tig0018287:4879-4898 None:intergenic 35.0%
! ATGAAGGTATACCAACTTCT+TGG - tig0018287:4925-4944 Msa1365420:intron 35.0%
TTCTCTGTGATATGACTCTT+CGG + tig0018287:4992-5011 None:intergenic 35.0%
ATTAGAAGCAAAATGCTCTC+TGG + tig0018287:5073-5092 None:intergenic 35.0%
AAAACTTTGTCACTAGCACT+TGG + tig0018287:5101-5120 None:intergenic 35.0%
! ACTGTAAATGATAATGACCC+CGG + tig0018287:5135-5154 None:intergenic 35.0%
GCAAATTACATCACAATACG+CGG - tig0018287:5166-5185 Msa1365420:intron 35.0%
AATTCAAGTGACGAACCAAA+AGG - tig0018287:5255-5274 Msa1365420:intron 35.0%
! GCAGAAAACTGAATTCCTTT+TGG + tig0018287:5273-5292 None:intergenic 35.0%
GATAAGAAGCTTAGAGTTGA+AGG - tig0018287:5345-5364 Msa1365420:intron 35.0%
TTAGAGTTGAAGGTTCAGAT+TGG - tig0018287:5355-5374 Msa1365420:intron 35.0%
TAGAGTTGAAGGTTCAGATT+GGG - tig0018287:5356-5375 Msa1365420:intron 35.0%
!! GAGTTTTCAGGATCAGTAAA+TGG + tig0018287:5420-5439 None:intergenic 35.0%
! GGATCTTTCTTAGAGTTTTC+AGG + tig0018287:5432-5451 None:intergenic 35.0%
AACATATCTCAATTGAGAGG+TGG - tig0018287:5636-5655 Msa1365420:intron 35.0%
GATTTGATTCTCGATGAAGT+TGG + tig0018287:5672-5691 None:intergenic 35.0%
TTGAAACAAAAGCTCCACAA+CGG + tig0018287:5718-5737 None:intergenic 35.0%
!! GTGGAGCTTTTGTTTCAATA+CGG - tig0018287:5720-5739 Msa1365420:intron 35.0%
ACAAAGATGTTGTGCCTAAA+TGG - tig0018287:5808-5827 Msa1365420:intron 35.0%
CAAAGATGTTGTGCCTAAAT+GGG - tig0018287:5809-5828 Msa1365420:intron 35.0%
! ATTGCTTCTAGATTCTAAGG+TGG - tig0018287:5910-5929 Msa1365420:intron 35.0%
!!! TCTCTTTTTTTGTCATCCAG+TGG - tig0018287:6016-6035 Msa1365420:intron 35.0%
!!! CTCTTTTTTTGTCATCCAGT+GGG - tig0018287:6017-6036 Msa1365420:intron 35.0%
!!! TCTTTTTTTGTCATCCAGTG+GGG - tig0018287:6018-6037 Msa1365420:intron 35.0%
GAGGAAATGTGATCAAATAG+TGG + tig0018287:6118-6137 None:intergenic 35.0%
ATTTCCTCTTTGTCAGTCAA+TGG - tig0018287:6130-6149 Msa1365420:intron 35.0%
CAATGGTAGTAAAACTGCAA+AGG - tig0018287:6147-6166 Msa1365420:intron 35.0%
TACTAGACCTCCTATTAATC+AGG - tig0018287:6267-6286 Msa1365420:intron 35.0%
ACATACACCTGATTAATAGG+AGG + tig0018287:6277-6296 None:intergenic 35.0%
CAAGGGACCAAGAAAAAATT+AGG + tig0018287:6500-6519 None:intergenic 35.0%
! CCCTTGTCAAAAACAGATTT+TGG - tig0018287:6514-6533 Msa1365420:intron 35.0%
!!! CCCAAAATCTGTTTTTGACA+AGG + tig0018287:6518-6537 None:intergenic 35.0%
! TCCCTAGCAATTTTTATAGG+AGG + tig0018287:6593-6612 None:intergenic 35.0%
! CCATCCCTAGCAATTTTTAT+AGG + tig0018287:6596-6615 None:intergenic 35.0%
CCTATAAAAATTGCTAGGGA+TGG - tig0018287:6593-6612 Msa1365420:intron 35.0%
GGATGGATCAATTATGGAAT+GGG - tig0018287:6610-6629 Msa1365420:intron 35.0%
ACACTTGAAAGATGAAGAGA+AGG + tig0018287:6663-6682 None:intergenic 35.0%
!! ACATTTGTTTGGCTTGTTTC+CGG - tig0018287:6833-6852 Msa1365420:intron 35.0%
CCTAAAATAACTACTACGTC+AGG + tig0018287:6962-6981 None:intergenic 35.0%
!! CCTGACGTAGTAGTTATTTT+AGG - tig0018287:6959-6978 Msa1365420:intron 35.0%
CGATTATCTTCTACATTACC+CGG + tig0018287:7041-7060 None:intergenic 35.0%
!! TTAGGTCATTTTGGTGTACA+AGG + tig0018287:7114-7133 None:intergenic 35.0%
TTGTACACCAAAATGACCTA+AGG - tig0018287:7113-7132 Msa1365420:intron 35.0%
! GATACAACCTTAGGTCATTT+TGG + tig0018287:7123-7142 None:intergenic 35.0%
CATTATGTTACAGGAGATGA+AGG - tig0018287:7197-7216 Msa1365420:intron 35.0%
AAAACACTTGATTGTCTTGG+CGG - tig0018287:7295-7314 Msa1365420:intron 35.0%
! TGGGTAAGTCTTGTCTTTAA+CGG - tig0018287:7406-7425 Msa1365420:intron 35.0%
ACTACATTATAGAGGGAACA+AGG - tig0018287:7718-7737 Msa1365420:intron 35.0%
TTATACGAGTAAACTTTCCC+GGG + tig0018287:7761-7780 None:intergenic 35.0%
CCATTAAATTACATCTTCCC+AGG + tig0018287:7981-8000 None:intergenic 35.0%
CCTGGGAAGATGTAATTTAA+TGG - tig0018287:7978-7997 Msa1365420:CDS 35.0%
! AAGTTTGATAATCCTTGCCA+TGG - tig0018287:8001-8020 Msa1365420:CDS 35.0%
! AGTTTGATAATCCTTGCCAT+GGG - tig0018287:8002-8021 Msa1365420:CDS 35.0%
CTAGAGTATATTCTATCCCA+TGG + tig0018287:8021-8040 None:intergenic 35.0%
CATGGGATAGAATATACTCT+AGG - tig0018287:8019-8038 Msa1365420:CDS 35.0%
CTTCCCTATCTGTTATGAAA+TGG - tig0018287:8121-8140 Msa1365420:intron 35.0%
CTCCCATTTCATAACAGATA+GGG + tig0018287:8127-8146 None:intergenic 35.0%
TCTCCCATTTCATAACAGAT+AGG + tig0018287:8128-8147 None:intergenic 35.0%
TATCTGTTATGAAATGGGAG+AGG - tig0018287:8127-8146 Msa1365420:intron 35.0%
ATCTGTTATGAAATGGGAGA+GGG - tig0018287:8128-8147 Msa1365420:intron 35.0%
CTAATATTAGTCCTATCCCA+TGG + tig0018287:8296-8315 None:intergenic 35.0%
CATGGGATAGGACTAATATT+AGG - tig0018287:8294-8313 Msa1365420:intron 35.0%
AAGGGCTCAACAATAACAAT+TGG - tig0018287:8555-8574 Msa1365420:intron 35.0%
ACCATCTTCAAAACACGAAT+TGG - tig0018287:8771-8790 Msa1365420:intron 35.0%
!!! ACCAATTCGTGTTTTGAAGA+TGG + tig0018287:8775-8794 None:intergenic 35.0%
! TAAAATGGACTCAACGGATT+CGG + tig0018287:8962-8981 None:intergenic 35.0%
! AAGGGTTAAAATGGACTCAA+CGG + tig0018287:8968-8987 None:intergenic 35.0%
AAGGAGGAAAAGGGTTAAAA+TGG + tig0018287:8977-8996 None:intergenic 35.0%
! GTGATGATTTTGTTGAATGG+TGG - tig0018287:9147-9166 Msa1365420:intron 35.0%
AATTGATATCAGCTCTCCAT+AGG + tig0018287:9211-9230 None:intergenic 35.0%
TATGGAGAGCTGATATCAAT+TGG - tig0018287:9210-9229 Msa1365420:intron 35.0%
! CTCAGTTTTGCATTAACACT+TGG + tig0018287:9246-9265 None:intergenic 35.0%
! CATCAAATTTTATGACTCCG+AGG - tig0018287:9323-9342 Msa1365420:intron 35.0%
AGGTTTCTCATTGTGTTTGT+TGG - tig0018287:9516-9535 Msa1365420:CDS 35.0%
! TTTCTCATTGTGTTTGTTGG+AGG - tig0018287:9519-9538 Msa1365420:CDS 35.0%
AATCAGTTCACGTGGAAATA+AGG - tig0018287:10040-10059 Msa1365420:intron 35.0%
TTCACGTGGAAATAAGGAAA+GGG - tig0018287:10046-10065 Msa1365420:intron 35.0%
GACACATCACATTCTTACTT+TGG + tig0018287:10092-10111 None:intergenic 35.0%
! TGCTCAAGCGTATTTTATCA+TGG - tig0018287:10156-10175 Msa1365420:intron 35.0%
! TCAAGCGTATTTTATCATGG+AGG - tig0018287:10159-10178 Msa1365420:intron 35.0%
! CAAGCGTATTTTATCATGGA+GGG - tig0018287:10160-10179 Msa1365420:intron 35.0%
CATCTCATGGAATTATGGAA+AGG + tig0018287:10215-10234 None:intergenic 35.0%
TATGGTAAAGACTGATCAGA+AGG + tig0018287:10336-10355 None:intergenic 35.0%
TGATCAGTCTTTACCATACT+GGG - tig0018287:10338-10357 Msa1365420:CDS 35.0%
TCAAAATGACACAGAACAGA+AGG + tig0018287:10475-10494 None:intergenic 35.0%
! ATGGCTCCTGTAATTTTCTT+TGG + tig0018287:10866-10885 None:intergenic 35.0%
!! TATGTGATGGATGATGATAG+TGG - tig0018287:11152-11171 Msa1365420:intron 35.0%
ATGGGAAAAAAACTATGCGA+GGG + tig0018287:11242-11261 None:intergenic 35.0%
TATGGGAAAAAAACTATGCG+AGG + tig0018287:11243-11262 None:intergenic 35.0%
GATCTTGGAACCATATGTAT+GGG + tig0018287:11260-11279 None:intergenic 35.0%
TGATCTTGGAACCATATGTA+TGG + tig0018287:11261-11280 None:intergenic 35.0%
AGAACACATGCTTAAAGCAT+GGG - tig0018287:11284-11303 Msa1365420:intron 35.0%
!!! ATATTTTTTTGTGGTGGTCG+GGG - tig0018287:11821-11840 Msa1365420:CDS 35.0%
TCATTGCTTCCAACATTCTA+AGG - tig0018287:12034-12053 Msa1365420:CDS 35.0%
CATTGCTTCCAACATTCTAA+GGG - tig0018287:12035-12054 Msa1365420:CDS 35.0%
AAAGAAAAACACAGGTAACC+AGG + tig0018287:12369-12388 None:intergenic 35.0%
! AAGAGCACAAAGAAAAACAC+AGG + tig0018287:12377-12396 None:intergenic 35.0%
!!! GATGTGTTTTTTTCTGGTGT+TGG - tig0018287:12458-12477 Msa1365420:intron 35.0%
AAAGCTGTTGCAAAGATCAT+CGG - tig0018287:12625-12644 Msa1365420:intron 35.0%
AACAAGGTTGAAAGGGAAAA+GGG + tig0018287:12680-12699 None:intergenic 35.0%
AAACAAGGTTGAAAGGGAAA+AGG + tig0018287:12681-12700 None:intergenic 35.0%
!!! ATGTGTATTTTGGTGAATGG+AGG - tig0018287:12847-12866 Msa1365420:intron 35.0%
TGGAGAACTGATATCAATTG+GGG - tig0018287:12912-12931 Msa1365420:intron 35.0%
TTGCATTAACAGTTGGATCA+AGG + tig0018287:12939-12958 None:intergenic 35.0%
! CTCAGTTTTGCATTAACAGT+TGG + tig0018287:12946-12965 None:intergenic 35.0%
AGTAGTGAGATGAATTGGGA+AGG + tig0018287:3850-3869 None:intergenic 40.0%
CTACAATGGAAGATGGAGAA+TGG - tig0018287:3876-3895 Msa1365420:three_prime_UTR 40.0%
!! GGAAGATGGAGAATGGATTA+TGG - tig0018287:3883-3902 Msa1365420:three_prime_UTR 40.0%
! TCTGAAGTTCTACAGCTCAA+CGG - tig0018287:4076-4095 Msa1365420:intron 40.0%
! TTTTGATCCAAAGTGCATGC+TGG - tig0018287:4165-4184 Msa1365420:CDS 40.0%
TTTGATCCAAAGTGCATGCT+GGG - tig0018287:4166-4185 Msa1365420:CDS 40.0%
TCATGCTGCATTATCCATAG+AGG - tig0018287:4259-4278 Msa1365420:CDS 40.0%
AACTGCAGCTCTCAAATTGT+CGG - tig0018287:4470-4489 Msa1365420:intron 40.0%
AGTGTGTTACATACTTCACC+AGG + tig0018287:4501-4520 None:intergenic 40.0%
! ATTAACTGCTGGAAGGGTTT+TGG + tig0018287:4654-4673 None:intergenic 40.0%
TTCCTCATTAACTGCTGGAA+GGG + tig0018287:4660-4679 None:intergenic 40.0%
CATAGTTCCTCATTAACTGC+TGG + tig0018287:4665-4684 None:intergenic 40.0%
! AAAGTTTTCCACCAGCAAAC+CGG - tig0018287:5113-5132 Msa1365420:intron 40.0%
CACTTGAATTCACTTGTGGA+GGG + tig0018287:5245-5264 None:intergenic 40.0%
TCACTTGAATTCACTTGTGG+AGG + tig0018287:5246-5265 None:intergenic 40.0%
TCGTCACTTGAATTCACTTG+TGG + tig0018287:5249-5268 None:intergenic 40.0%
TTTCTTAAGGACTCGGAAGT+AGG + tig0018287:5453-5472 None:intergenic 40.0%
TGATGTTTATGCTCGTCACT+TGG - tig0018287:5503-5522 Msa1365420:intron 40.0%
CTTTGTTCCATATACCCTGT+AGG + tig0018287:5794-5813 None:intergenic 40.0%
GGGAAAACATACTCCCATTT+AGG + tig0018287:5825-5844 None:intergenic 40.0%
TATTTATCACTAGAGGGGGA+TGG + tig0018287:5856-5875 None:intergenic 40.0%
GGTGGCTTAGAGTTTCTATA+TGG - tig0018287:5928-5947 Msa1365420:intron 40.0%
CTCATGTAGGTTGCAAGAAA+GGG + tig0018287:6086-6105 None:intergenic 40.0%
ACTCATGTAGGTTGCAAGAA+AGG + tig0018287:6087-6106 None:intergenic 40.0%
! ACTACCATTGACTGACAAAG+AGG + tig0018287:6137-6156 None:intergenic 40.0%
TGCTAGGGATGGATCAATTA+TGG - tig0018287:6604-6623 Msa1365420:intron 40.0%
GGGATGGATCAATTATGGAA+TGG - tig0018287:6609-6628 Msa1365420:intron 40.0%
! TTGACAGGCTGAAGATTTTC+AGG - tig0018287:6782-6801 Msa1365420:intron 40.0%
CGGCATGTTTCACATTTGTT+TGG - tig0018287:6822-6841 Msa1365420:intron 40.0%
!! CATTTGTTTGGCTTGTTTCC+GGG - tig0018287:6834-6853 Msa1365420:intron 40.0%
!! ATTTGTTTGGCTTGTTTCCG+GGG - tig0018287:6835-6854 Msa1365420:intron 40.0%
TCGATATTTATTGTGTGCCC+CGG + tig0018287:6855-6874 None:intergenic 40.0%
TCCAGATCTTTGTAAAGCTG+TGG - tig0018287:6881-6900 Msa1365420:intron 40.0%
TCCACAGCTTTACAAAGATC+TGG + tig0018287:6885-6904 None:intergenic 40.0%
TTATCTTCTACATTACCCGG+AGG + tig0018287:7038-7057 None:intergenic 40.0%
ACAAGGTTGAACATGAACGA+GGG + tig0018287:7097-7116 None:intergenic 40.0%
TACAAGGTTGAACATGAACG+AGG + tig0018287:7098-7117 None:intergenic 40.0%
AACTTGGAAAGCTGCATTGT+GGG - tig0018287:7235-7254 Msa1365420:intron 40.0%
AAGTTCGCGTCAATTTGGAA+TGG + tig0018287:7386-7405 None:intergenic 40.0%
TTCCAAATTGACGCGAACTT+TGG - tig0018287:7386-7405 Msa1365420:intron 40.0%
TCCAAATTGACGCGAACTTT+GGG - tig0018287:7387-7406 Msa1365420:intron 40.0%
! AGTCACATTGGCTGAGAAAA+TGG - tig0018287:7475-7494 Msa1365420:intron 40.0%
! GTGAAAGGATTAAAAGCACG+TGG - tig0018287:7611-7630 Msa1365420:intron 40.0%
! AAAGGATTAAAAGCACGTGG+CGG - tig0018287:7614-7633 Msa1365420:intron 40.0%
GTAGTCTCATTTCGGAATTC+TGG + tig0018287:7703-7722 None:intergenic 40.0%
TTAGGGATTCACTTCGCAAA+GGG + tig0018287:7813-7832 None:intergenic 40.0%
TTTAGGGATTCACTTCGCAA+AGG + tig0018287:7814-7833 None:intergenic 40.0%
! ACGTACAGGAAGTAATTTGC+TGG - tig0018287:7900-7919 Msa1365420:CDS 40.0%
!! CGTACAGGAAGTAATTTGCT+GGG - tig0018287:7901-7920 Msa1365420:CDS 40.0%
GTATATTCTATCCCATGGCA+AGG + tig0018287:8016-8035 None:intergenic 40.0%
! ATATACTCTAGGGACAGTTC+AGG - tig0018287:8030-8049 Msa1365420:CDS 40.0%
! TATACTCTAGGGACAGTTCA+GGG - tig0018287:8031-8050 Msa1365420:CDS 40.0%
CAGTTTGTCAATGCTTGAAC+AGG + tig0018287:8060-8079 None:intergenic 40.0%
ATATTTGCAAGCCATGGGAT+AGG - tig0018287:8282-8301 Msa1365420:intron 40.0%
GGTACCAAACATGTACTTAG+AGG - tig0018287:8508-8527 Msa1365420:intron 40.0%
GCAATACTTGAAACGAGTTG+TGG + tig0018287:8534-8553 None:intergenic 40.0%
! ACTCGTTTCAAGTATTGCGA+AGG - tig0018287:8536-8555 Msa1365420:intron 40.0%
! CTCGTTTCAAGTATTGCGAA+GGG - tig0018287:8537-8556 Msa1365420:intron 40.0%
AGACAAACACCTTATCCTGA+AGG - tig0018287:8803-8822 Msa1365420:intron 40.0%
TTGGTGAAGAGGTTCAAAGT+GGG + tig0018287:8862-8881 None:intergenic 40.0%
GATCTTTGCAACAACTTTGG+TGG + tig0018287:8929-8948 None:intergenic 40.0%
! AAAATGGACTCAACGGATTC+GGG + tig0018287:8961-8980 None:intergenic 40.0%
TGGGCAACAATAAACAAAGG+AGG + tig0018287:8993-9012 None:intergenic 40.0%
! TGGTGGGCAACAATAAACAA+AGG + tig0018287:8996-9015 None:intergenic 40.0%
!!! GTAGTTTTGAAGACATGGGT+TGG + tig0018287:9059-9078 None:intergenic 40.0%
AACATCGTATCAGTAGCCTA+TGG - tig0018287:9746-9765 Msa1365420:intron 40.0%
TCGAGGTGAAATATTCCTCA+AGG + tig0018287:9797-9816 None:intergenic 40.0%
AAATTGGTATCCCCATAGGA+AGG - tig0018287:9920-9939 Msa1365420:CDS 40.0%
AATTGGTATCCCCATAGGAA+GGG - tig0018287:9921-9940 Msa1365420:CDS 40.0%
GTTCACGTGGAAATAAGGAA+AGG - tig0018287:10045-10064 Msa1365420:intron 40.0%
! GTATTTTATCATGGAGGGTG+TGG - tig0018287:10165-10184 Msa1365420:intron 40.0%
GGAAAGGAAGTTGTTTGGAT+CGG + tig0018287:10199-10218 None:intergenic 40.0%
!!! TTGTGCAGCGCTCATTTTTT+GGG - tig0018287:10297-10316 Msa1365420:CDS 40.0%
!!! CGCTCATTTTTTGGGTTCAA+TGG - tig0018287:10305-10324 Msa1365420:CDS 40.0%
CTGATCAGTCTTTACCATAC+TGG - tig0018287:10337-10356 Msa1365420:CDS 40.0%
GATCAGTCTTTACCATACTG+GGG - tig0018287:10339-10358 Msa1365420:CDS 40.0%
! TACCGACTGATCTAAGTTCA+CGG - tig0018287:11026-11045 Msa1365420:intron 40.0%
!! GATGATAGTGGCATAGTTTG+TGG - tig0018287:11164-11183 Msa1365420:intron 40.0%
TTTCAGCCACTCAAGTCTAA+AGG - tig0018287:11209-11228 Msa1365420:intron 40.0%
TCTATGCCTTTAGACTTGAG+TGG + tig0018287:11218-11237 None:intergenic 40.0%
TGGGAAAAAAACTATGCGAG+GGG + tig0018287:11241-11260 None:intergenic 40.0%
GCATGTGTTCTGTTTGATCT+TGG + tig0018287:11275-11294 None:intergenic 40.0%
CAGAACACATGCTTAAAGCA+TGG - tig0018287:11283-11302 Msa1365420:intron 40.0%
AGCAACACATAGCCTTTGAA+TGG - tig0018287:11599-11618 Msa1365420:CDS 40.0%
GCAACACATAGCCTTTGAAT+GGG - tig0018287:11600-11619 Msa1365420:CDS 40.0%
! TAGACATTTTAAGCCATGGG+CGG + tig0018287:11627-11646 None:intergenic 40.0%
TTGGTGAAGAGGTTCAAAGT+GGG + tig0018287:8862-8881 None:intergenic 40.0%
AGAATGTTGGAAGCAATGAC+AGG + tig0018287:12033-12052 None:intergenic 40.0%
! AGTTAGGTTAGGTTTGCTTC+TGG - tig0018287:12077-12096 Msa1365420:CDS 40.0%
! TGGTTTGGCATGCTGTTATT+TGG - tig0018287:12097-12116 Msa1365420:CDS 40.0%
! ATGCTGTTATTTGGACCATC+TGG - tig0018287:12106-12125 Msa1365420:CDS 40.0%
AGAAAACACTAGGTCATTCC+GGG + tig0018287:12136-12155 None:intergenic 40.0%
CAGAAAACACTAGGTCATTC+CGG + tig0018287:12137-12156 None:intergenic 40.0%
! AATGACCTAGTGTTTTCTGG+TGG - tig0018287:12138-12157 Msa1365420:CDS 40.0%
! AGTTTTGCTTTATCCACCAC+AGG + tig0018287:12180-12199 None:intergenic 40.0%
! CAAAACTCTTAGCTTGGAAG+TGG - tig0018287:12193-12212 Msa1365420:CDS 40.0%
! TTCCTGCACTTTTCATGAGT+GGG - tig0018287:12239-12258 Msa1365420:CDS 40.0%
AAAAACACAGGTAACCAGGA+CGG + tig0018287:12365-12384 None:intergenic 40.0%
!! TTTTTGTCTTGGTGGCTAGT+AGG - tig0018287:12425-12444 Msa1365420:intron 40.0%
!!! GGGCTTGATGTGTTTTTTTC+TGG - tig0018287:12452-12471 Msa1365420:intron 40.0%
CTCAATAGAAGGCCGAAAAA+AGG + tig0018287:12494-12513 None:intergenic 40.0%
!!! CTTTTTTCGGCCTTCTATTG+AGG - tig0018287:12492-12511 Msa1365420:intron 40.0%
ACCATAAGGACCTCAATAGA+AGG + tig0018287:12505-12524 None:intergenic 40.0%
GATGATCTTTGCAACAGCTT+TGG + tig0018287:12626-12645 None:intergenic 40.0%
! ATAAGTGGACTCAACGGATT+CGG + tig0018287:12656-12675 None:intergenic 40.0%
! AAGGGTATAAGTGGACTCAA+CGG + tig0018287:12662-12681 None:intergenic 40.0%
! GAAAGGGAAAAGGGTATAAG+TGG + tig0018287:12671-12690 None:intergenic 40.0%
TCAGTACCACCAAATGCAAT+TGG + tig0018287:12877-12896 None:intergenic 40.0%
GGAGAACTGATATCAATTGG+GGG - tig0018287:12913-12932 Msa1365420:intron 40.0%
TGTATACAGCCCTCATTTGT+TGG - tig0018287:13156-13175 Msa1365420:CDS 40.0%
GTATACAGCCCTCATTTGTT+GGG - tig0018287:13157-13176 Msa1365420:CDS 40.0%
CCATTGAACCCAACAAATGA+GGG + tig0018287:13168-13187 None:intergenic 40.0%
GGAAGGAAGAGAATAGAGAG+AGG + tig0018287:3833-3852 None:intergenic 45.0%
!! GGAGAATGGATTATGGTGCA+AGG - tig0018287:3890-3909 Msa1365420:three_prime_UTR 45.0%
TTCCACAAGTCCTTATGTGG+AGG + tig0018287:3917-3936 None:intergenic 45.0%
TGAACCTTCAATGCCCTTGA+AGG - tig0018287:3964-3983 Msa1365420:three_prime_UTR 45.0%
!! GTAACCTTCAAGGGCATTGA+AGG + tig0018287:3971-3990 None:intergenic 45.0%
!! TCGTCTTGGTGCCATGATTT+GGG - tig0018287:4042-4061 Msa1365420:intron 45.0%
TTGATCCAAAGTGCATGCTG+GGG - tig0018287:4167-4186 Msa1365420:CDS 45.0%
GGACAGTAGTACTAGAGTCT+AGG - tig0018287:4190-4209 Msa1365420:CDS 45.0%
TCTTCACAGAGGACACACTA+TGG - tig0018287:4352-4371 Msa1365420:intron 45.0%
!! ACACTATGGACTGGTATACC+TGG - tig0018287:4366-4385 Msa1365420:intron 45.0%
! TTTTTGTCGGTGTAGTTGCC+AGG + tig0018287:4387-4406 None:intergenic 45.0%
!!! CGCTTCAGGAGCATTTTTGT+CGG + tig0018287:4400-4419 None:intergenic 45.0%
ACTGCAGCTCTCAAATTGTC+GGG - tig0018287:4471-4490 Msa1365420:intron 45.0%
GTGTTACATACTTCACCAGG+AGG + tig0018287:4498-4517 None:intergenic 45.0%
AACCCTTCCAGCAGTTAATG+AGG - tig0018287:4655-4674 Msa1365420:intron 45.0%
GTTCCTCATTAACTGCTGGA+AGG + tig0018287:4661-4680 None:intergenic 45.0%
! TCTTTAGTAATGGAGTGGGG+TGG + tig0018287:4832-4851 None:intergenic 45.0%
TTTGTCACTAGCACTTGGTC+GGG + tig0018287:5096-5115 None:intergenic 45.0%
CTTTGTCACTAGCACTTGGT+CGG + tig0018287:5097-5116 None:intergenic 45.0%
! AAGTTTTCCACCAGCAAACC+GGG - tig0018287:5114-5133 Msa1365420:intron 45.0%
! ATAATGGAAGGAAGCTGTCC+TGG - tig0018287:5210-5229 Msa1365420:intron 45.0%
AAATGGACCATCAAACGACG+AGG + tig0018287:5403-5422 None:intergenic 45.0%
TGATGAAGATCCTTCCGTTG+TGG - tig0018287:5701-5720 Msa1365420:intron 45.0%
AACAAAAGCTCCACAACGGA+AGG + tig0018287:5714-5733 None:intergenic 45.0%
CTAATTGCTTGTTCACGTCC+TGG - tig0018287:5753-5772 Msa1365420:intron 45.0%
TGGCAAACCTACAGGGTATA+TGG - tig0018287:5784-5803 Msa1365420:intron 45.0%
TGTAGGTTGCAAGAAAGGGA+CGG + tig0018287:6082-6101 None:intergenic 45.0%
ATCAGTTCACCTCAGCAACA+TGG + tig0018287:6436-6455 None:intergenic 45.0%
AGGACCCAGATGTACATCAT+CGG - tig0018287:6802-6821 Msa1365420:intron 45.0%
CATGCCGATGATGTACATCT+GGG + tig0018287:6809-6828 None:intergenic 45.0%
ACATGCCGATGATGTACATC+TGG + tig0018287:6810-6829 None:intergenic 45.0%
TTTCCAAGTTGTTGACCACC+CGG + tig0018287:7225-7244 None:intergenic 45.0%
CAACTTGGAAAGCTGCATTG+TGG - tig0018287:7234-7253 Msa1365420:intron 45.0%
!!! CAGGAAGCTGTTGGTTTTGA+AGG - tig0018287:7326-7345 Msa1365420:intron 45.0%
!!! GAAGCTGTTGGTTTTGAAGG+AGG - tig0018287:7329-7348 Msa1365420:intron 45.0%
! TTCGCGTCAATTTGGAATGG+AGG + tig0018287:7383-7402 None:intergenic 45.0%
ACCCAAAGTTCGCGTCAATT+TGG + tig0018287:7391-7410 None:intergenic 45.0%
GCTTGTTCAAAGCACAACGA+AGG - tig0018287:7538-7557 Msa1365420:intron 45.0%
TGGGCAAATGGTTGTGTGAA+AGG - tig0018287:7596-7615 Msa1365420:intron 45.0%
! AAGGATTAAAAGCACGTGGC+GGG - tig0018287:7615-7634 Msa1365420:intron 45.0%
GTCAACATCTGCTGGAAAGA+AGG - tig0018287:7644-7663 Msa1365420:intron 45.0%
GAAGGTGATCTGCATGAAGT+TGG - tig0018287:7662-7681 Msa1365420:intron 45.0%
!! ATCTGCATGAAGTTGGCCTT+TGG - tig0018287:7669-7688 Msa1365420:intron 45.0%
TTATAGAGGGAACAAGGTCG+TGG - tig0018287:7724-7743 Msa1365420:intron 45.0%
GTCGTGGCAAATTTATCACC+CGG - tig0018287:7740-7759 Msa1365420:intron 45.0%
TCGTGGCAAATTTATCACCC+GGG - tig0018287:7741-7760 Msa1365420:intron 45.0%
TCTCCATGAGTCATTTAGCC+TGG - tig0018287:7960-7979 Msa1365420:CDS 45.0%
CTCCATGAGTCATTTAGCCT+GGG - tig0018287:7961-7980 Msa1365420:CDS 45.0%
TTCCCAGGCTAAATGACTCA+TGG + tig0018287:7966-7985 None:intergenic 45.0%
TATGGGATGATGACTCACAG+TGG - tig0018287:8404-8423 Msa1365420:intron 45.0%
ATGACTCACAGTGGCAAAGA+AGG - tig0018287:8413-8432 Msa1365420:intron 45.0%
GTGGCCTCTAAGTACATGTT+TGG + tig0018287:8515-8534 None:intergenic 45.0%
ACCTTATCCTGAAGGACTCA+AGG - tig0018287:8811-8830 Msa1365420:intron 45.0%
! GTTGGTGAAGAGGTTCAAAG+TGG + tig0018287:8863-8882 None:intergenic 45.0%
AAGCAATGACAGGATCAACG+GGG + tig0018287:8888-8907 None:intergenic 45.0%
GAAGCAATGACAGGATCAAC+GGG + tig0018287:8889-8908 None:intergenic 45.0%
GGAAGCAATGACAGGATCAA+CGG + tig0018287:8890-8909 None:intergenic 45.0%
AGAATGTCGGAAGCAATGAC+AGG + tig0018287:8898-8917 None:intergenic 45.0%
TCATTGCTTCCGACATTCTC+AGG - tig0018287:8899-8918 Msa1365420:intron 45.0%
CATTGCTTCCGACATTCTCA+GGG - tig0018287:8900-8919 Msa1365420:intron 45.0%
GAGTGCCTATTGCATTTGGT+GGG - tig0018287:9169-9188 Msa1365420:intron 45.0%
TCAGTCCCACCAAATGCAAT+AGG + tig0018287:9177-9196 None:intergenic 45.0%
GGAGAGCTGATATCAATTGG+CGG - tig0018287:9213-9232 Msa1365420:intron 45.0%
!! CTGATATCAATTGGCGGACT+TGG - tig0018287:9219-9238 Msa1365420:intron 45.0%
! CTCATTGTGTTTGTTGGAGG+AGG - tig0018287:9522-9541 Msa1365420:CDS 45.0%
TTGTTGGAGGAGGCAAAGAT+AGG - tig0018287:9532-9551 Msa1365420:CDS 45.0%
ATCGTATCAGTAGCCTATGG+CGG - tig0018287:9749-9768 Msa1365420:intron 45.0%
ATTGGTATCCCCATAGGAAG+GGG - tig0018287:9922-9941 Msa1365420:CDS 45.0%
TCTCTCTAACCCCTTCCTAT+GGG + tig0018287:9934-9953 None:intergenic 45.0%
!!! GTTGTGCAGCGCTCATTTTT+TGG - tig0018287:10296-10315 Msa1365420:CDS 45.0%
CTTGAGAAACTTCCCCAGTA+TGG + tig0018287:10354-10373 None:intergenic 45.0%
CATACTGGGGAAGTTTCTCA+AGG - tig0018287:10352-10371 Msa1365420:CDS 45.0%
! ATAGTTTGTGGCACTCATCG+TGG - tig0018287:10519-10538 Msa1365420:intron 45.0%
! TAGTTTGTGGCACTCATCGT+GGG - tig0018287:10520-10539 Msa1365420:intron 45.0%
CTCCGTGAACTTAGATCAGT+CGG + tig0018287:11031-11050 None:intergenic 45.0%
GTGAGCTTAGTTCAGTTGGT+AGG + tig0018287:11883-11902 None:intergenic 45.0%
AGGAGTGAGCTTAGTTCAGT+TGG + tig0018287:11887-11906 None:intergenic 45.0%
!! TGCTTGCTATTGCACTGACA+CGG + tig0018287:11953-11972 None:intergenic 45.0%
CAATAGCAAGCAACCAGCAA+AGG - tig0018287:11961-11980 Msa1365420:CDS 45.0%
! GTTGGTGAAGAGGTTCAAAG+TGG + tig0018287:8863-8882 None:intergenic 45.0%
AAGCAATGACAGGATCCACT+GGG + tig0018287:12023-12042 None:intergenic 45.0%
ACTGGCATCCCTTAGAATGT+TGG + tig0018287:12046-12065 None:intergenic 45.0%
! AACATTCTAAGGGATGCCAG+TGG - tig0018287:12045-12064 Msa1365420:CDS 45.0%
! ACATTCTAAGGGATGCCAGT+GGG - tig0018287:12046-12065 Msa1365420:CDS 45.0%
! GGTTAGGTTTGCTTCTGGTT+TGG - tig0018287:12082-12101 Msa1365420:CDS 45.0%
! CGGAATGACCTAGTGTTTTC+TGG - tig0018287:12135-12154 Msa1365420:CDS 45.0%
! GAAAAGTGCAGGAACTACCA+GGG + tig0018287:12233-12252 None:intergenic 45.0%
! TGAAAAGTGCAGGAACTACC+AGG + tig0018287:12234-12253 None:intergenic 45.0%
! GTTCCTGCACTTTTCATGAG+TGG - tig0018287:12238-12257 Msa1365420:CDS 45.0%
!!! TTTTGTGGTGGTGGTTTTCC+TGG - tig0018287:12296-12315 Msa1365420:intron 45.0%
!!! TTTGTGGTGGTGGTTTTCCT+GGG - tig0018287:12297-12316 Msa1365420:intron 45.0%
TAACCAGGACGGAAAGGATA+AGG + tig0018287:12354-12373 None:intergenic 45.0%
GCCTTCTATTGAGGTCCTTA+TGG - tig0018287:12501-12520 Msa1365420:intron 45.0%
! GATCTTTGCAACAGCTTTGG+TGG + tig0018287:12623-12642 None:intergenic 45.0%
! TAAGTGGACTCAACGGATTC+GGG + tig0018287:12655-12674 None:intergenic 45.0%
! CCCTCATTTGTTGGGTTCAA+TGG - tig0018287:13165-13184 Msa1365420:CDS 45.0%
GCCATTGAACCCAACAAATG+AGG + tig0018287:13169-13188 None:intergenic 45.0%
!! ATATATATAGATATAAAAAA+GGG + tig0018287:12553-12572 None:intergenic 5.0%
!! TATATATATAGATATAAAAA+AGG + tig0018287:12554-12573 None:intergenic 5.0%
!! AAAAAAAAATAAAAATTCTA+AGG - tig0018287:12593-12612 Msa1365420:intron 5.0%
!! AAAAAAAATAAAAATTCTAA+GGG - tig0018287:12594-12613 Msa1365420:intron 5.0%
GTCCTCCACATAAGGACTTG+TGG - tig0018287:3912-3931 Msa1365420:three_prime_UTR 50.0%
GGGTTCCACAAGTCCTTATG+TGG + tig0018287:3920-3939 None:intergenic 50.0%
TTTCTAGGCCTGCCAAGTAC+TGG - tig0018287:3993-4012 Msa1365420:exon 50.0%
GATGGCATCAGTCCAGTACT+TGG + tig0018287:4008-4027 None:intergenic 50.0%
CAAGACGACCATTGCCAATG+GGG + tig0018287:4030-4049 None:intergenic 50.0%
CCAAGACGACCATTGCCAAT+GGG + tig0018287:4031-4050 None:intergenic 50.0%
ACCAAGACGACCATTGCCAA+TGG + tig0018287:4032-4051 None:intergenic 50.0%
!! GTCGTCTTGGTGCCATGATT+TGG - tig0018287:4041-4060 Msa1365420:intron 50.0%
!! CGTCTTGGTGCCATGATTTG+GGG - tig0018287:4043-4062 Msa1365420:intron 50.0%
CTGTATGCCACCCCAAATCA+TGG + tig0018287:4056-4075 None:intergenic 50.0%
TGATCCAAAGTGCATGCTGG+GGG - tig0018287:4168-4187 Msa1365420:CDS 50.0%
ACAGAGGACACACTATGGAC+TGG - tig0018287:4357-4376 Msa1365420:intron 50.0%
CAAAAATGCTCCTGAAGCGC+TGG - tig0018287:4401-4420 Msa1365420:intron 50.0%
GAGAGCTGCAGTTGTAGCTT+CGG + tig0018287:4463-4482 None:intergenic 50.0%
! TTAGTAATGGAGTGGGGTGG+AGG + tig0018287:4829-4848 None:intergenic 50.0%
! AGTTTTCCACCAGCAAACCG+GGG - tig0018287:5115-5134 Msa1365420:intron 50.0%
! TGATAATGACCCCGGTTTGC+TGG + tig0018287:5127-5146 None:intergenic 50.0%
AAGGAAGCTGTCCTGGCAAA+AGG - tig0018287:5217-5236 Msa1365420:intron 50.0%
ACAGCTTCCTCGTCGTTTGA+TGG - tig0018287:5393-5412 Msa1365420:intron 50.0%
TTGTTCACGTCCTGGAACTC+AGG - tig0018287:5761-5780 Msa1365420:intron 50.0%
AACTCAGGTGGCAAACCTAC+AGG - tig0018287:5776-5795 Msa1365420:intron 50.0%
ACTCAGGTGGCAAACCTACA+GGG - tig0018287:5777-5796 Msa1365420:intron 50.0%
AGAGGGGGATGGAAAGTGAA+GGG + tig0018287:5845-5864 None:intergenic 50.0%
TAGAGGGGGATGGAAAGTGA+AGG + tig0018287:5846-5865 None:intergenic 50.0%
GTGGCTCTTGACACTCATGT+AGG + tig0018287:6099-6118 None:intergenic 50.0%
TCTTGCATGTTGCTACGCAC+AGG - tig0018287:6392-6411 Msa1365420:intron 50.0%
!! TCAGCAACATGGTGGATTGG+TGG + tig0018287:6425-6444 None:intergenic 50.0%
ACCAATCCACCATGTTGCTG+AGG - tig0018287:6424-6443 Msa1365420:intron 50.0%
!! ACCTCAGCAACATGGTGGAT+TGG + tig0018287:6428-6447 None:intergenic 50.0%
AGTTCACCTCAGCAACATGG+TGG + tig0018287:6433-6452 None:intergenic 50.0%
GTTACAGGAGATGAAGGTCC+CGG - tig0018287:7203-7222 Msa1365420:intron 50.0%
TTACAGGAGATGAAGGTCCC+GGG - tig0018287:7204-7223 Msa1365420:intron 50.0%
TTCCAAGTTGTTGACCACCC+GGG + tig0018287:7224-7243 None:intergenic 50.0%
AACCAACAGCTTCCTGCTCA+GGG + tig0018287:7322-7341 None:intergenic 50.0%
AAACCAACAGCTTCCTGCTC+AGG + tig0018287:7323-7342 None:intergenic 50.0%
ATGGAGGATGTGCTGTGAAC+AGG + tig0018287:7367-7386 None:intergenic 50.0%
CCATTTGCCCATTTATCCCG+AGG + tig0018287:7587-7606 None:intergenic 50.0%
CCTCGGGATAAATGGGCAAA+TGG - tig0018287:7584-7603 Msa1365420:intron 50.0%
! AGGATTAAAAGCACGTGGCG+GGG - tig0018287:7616-7635 Msa1365420:intron 50.0%
ATGGGAGAGGGACTCAGAAA+TGG - tig0018287:8140-8159 Msa1365420:intron 50.0%
GCCTTGAGTCCTTCAGGATA+AGG + tig0018287:8815-8834 None:intergenic 50.0%
! GGTGGAGTGCCTATTGCATT+TGG - tig0018287:9165-9184 Msa1365420:intron 50.0%
! GGAGTGCCTATTGCATTTGG+TGG - tig0018287:9168-9187 Msa1365420:intron 50.0%
! ATTTGGTGGGACTGAAGAGC+CGG - tig0018287:9182-9201 Msa1365420:intron 50.0%
GTGTGAGGATGTTGTCCTTG+AGG - tig0018287:9779-9798 Msa1365420:intron 50.0%
CTCTCTAACCCCTTCCTATG+GGG + tig0018287:9933-9952 None:intergenic 50.0%
CTCTCTCTAACCCCTTCCTA+TGG + tig0018287:9935-9954 None:intergenic 50.0%
CATAGGAAGGGGTTAGAGAG+AGG - tig0018287:9933-9952 Msa1365420:CDS 50.0%
! AGAAATGGAGGTGGCTTGCA+TGG - tig0018287:10599-10618 Msa1365420:CDS 50.0%
CGACTGATCTAAGTTCACGG+AGG - tig0018287:11029-11048 Msa1365420:CDS 50.0%
GAAGCAATGACAGGATCCAC+TGG + tig0018287:12024-12043 None:intergenic 50.0%
! CATTCTAAGGGATGCCAGTG+GGG - tig0018287:12047-12066 Msa1365420:CDS 50.0%
! ATTCTAAGGGATGCCAGTGG+GGG - tig0018287:12048-12067 Msa1365420:CDS 50.0%
GAGTGCCACCAGAAAACACT+AGG + tig0018287:12146-12165 None:intergenic 50.0%
! CTTAGCTTGGAAGTGGTTCC+TGG - tig0018287:12200-12219 Msa1365420:CDS 50.0%
! CTCCCACTCATGAAAAGTGC+AGG + tig0018287:12244-12263 None:intergenic 50.0%
! CTGCACTTTTCATGAGTGGG+AGG - tig0018287:12242-12261 Msa1365420:CDS 50.0%
TACCGATGCCAACAAAGGAC+GGG + tig0018287:12273-12292 None:intergenic 50.0%
CTACCGATGCCAACAAAGGA+CGG + tig0018287:12274-12293 None:intergenic 50.0%
!! GTCCTTTGTTGGCATCGGTA+GGG - tig0018287:12273-12292 Msa1365420:intron 50.0%
AACCCTACCGATGCCAACAA+AGG + tig0018287:12278-12297 None:intergenic 50.0%
!!! TTGGCATCGGTAGGGTTTTG+TGG - tig0018287:12281-12300 Msa1365420:intron 50.0%
!!! TTGTGGTGGTGGTTTTCCTG+GGG - tig0018287:12298-12317 Msa1365420:intron 50.0%
! TGTCTTGGTGGCTAGTAGGT+TGG - tig0018287:12429-12448 Msa1365420:intron 50.0%
! GTCTTGGTGGCTAGTAGGTT+GGG - tig0018287:12430-12449 Msa1365420:intron 50.0%
! TCTTGGTGGCTAGTAGGTTG+GGG - tig0018287:12431-12450 Msa1365420:intron 50.0%
!! GGAGGAGTGCCAATTGCATT+TGG - tig0018287:12865-12884 Msa1365420:intron 50.0%
! GGAGTGCCAATTGCATTTGG+TGG - tig0018287:12868-12887 Msa1365420:intron 50.0%
ATCAGTTCTCCATAGGCAGC+TGG + tig0018287:12904-12923 None:intergenic 50.0%
GGTGCAAGGTCCTCCACATA+AGG - tig0018287:3904-3923 Msa1365420:three_prime_UTR 55.0%
GCATCAGTCCAGTACTTGGC+AGG + tig0018287:4004-4023 None:intergenic 55.0%
TGGACTGATGCCATCCCCAT+TGG - tig0018287:4013-4032 Msa1365420:intron 55.0%
GATGCCATCCCCATTGGCAA+TGG - tig0018287:4019-4038 Msa1365420:intron 55.0%
ACGACCATTGCCAATGGGGA+TGG + tig0018287:4026-4045 None:intergenic 55.0%
CCCATTGGCAATGGTCGTCT+TGG - tig0018287:4028-4047 Msa1365420:intron 55.0%
!! CTTGGTGCCATGATTTGGGG+TGG - tig0018287:4046-4065 Msa1365420:intron 55.0%
GATCCAAAGTGCATGCTGGG+GGG - tig0018287:4169-4188 Msa1365420:CDS 55.0%
CTCAAATTGTCGGGACCTCC+TGG - tig0018287:4480-4499 Msa1365420:intron 55.0%
!! TAATGACCCCGGTTTGCTGG+TGG + tig0018287:5124-5143 None:intergenic 55.0%
! TGTGGAGGGATCCTTTTGCC+AGG + tig0018287:5231-5250 None:intergenic 55.0%
TTCACGTCCTGGAACTCAGG+TGG - tig0018287:5764-5783 Msa1365420:intron 55.0%
AGGTTTGCCACCTGAGTTCC+AGG + tig0018287:5774-5793 None:intergenic 55.0%
GCAGCGCAGGAAGTAAGTAG+AGG + tig0018287:7565-7584 None:intergenic 55.0%
ACTTACTTCCTGCGCTGCCT+CGG - tig0018287:7567-7586 Msa1365420:intron 55.0%
TGCGCTGCCTCGGGATAAAT+GGG - tig0018287:7577-7596 Msa1365420:intron 55.0%
GGGTGACAGTCAACATCTGC+TGG - tig0018287:7636-7655 Msa1365420:intron 55.0%
GCATTGCGTTGCACTCACAC+GGG + tig0018287:8840-8859 None:intergenic 55.0%
GGCATTGCGTTGCACTCACA+CGG + tig0018287:8841-8860 None:intergenic 55.0%
! CAACGGGGATGTTGGTGAAG+AGG + tig0018287:8873-8892 None:intergenic 55.0%
GACAGGATCAACGGGGATGT+TGG + tig0018287:8881-8900 None:intergenic 55.0%
GGTGGCATCCCTGAGAATGT+CGG + tig0018287:8911-8930 None:intergenic 55.0%
ATCAGCTCTCCATAGGCAGC+CGG + tig0018287:9204-9223 None:intergenic 55.0%
TCACACACAGTCTCCGCCAT+AGG + tig0018287:9765-9784 None:intergenic 55.0%
! TATGGCGGAGACTGTGTGTG+AGG - tig0018287:9764-9783 Msa1365420:intron 55.0%
! GGGCATTGTGTTGCCTTTGC+TGG + tig0018287:11977-11996 None:intergenic 55.0%
! TTCTAAGGGATGCCAGTGGG+GGG - tig0018287:12049-12068 Msa1365420:CDS 55.0%
GGGGGGAAGAGAGTTAGGTT+AGG - tig0018287:12066-12085 Msa1365420:CDS 55.0%
TTTGGACCATCTGGACGTCC+CGG - tig0018287:12115-12134 Msa1365420:CDS 55.0%
TTCTGGTGGCACTCTTCGTG+TGG - tig0018287:12152-12171 Msa1365420:CDS 55.0%
CTTGGAAGTGGTTCCTGGCT+AGG - tig0018287:12205-12224 Msa1365420:CDS 55.0%
AGCCCGTCCTTTGTTGGCAT+CGG - tig0018287:12268-12287 Msa1365420:intron 55.0%
!! CGTCCTTTGTTGGCATCGGT+AGG - tig0018287:12272-12291 Msa1365420:intron 55.0%
!! GCATCGGTAGGGTTTTGTGG+TGG - tig0018287:12284-12303 Msa1365420:intron 55.0%
!! TCGGTAGGGTTTTGTGGTGG+TGG - tig0018287:12287-12306 Msa1365420:intron 55.0%
!!! TGTGGTGGTGGTTTTCCTGG+GGG - tig0018287:12299-12318 Msa1365420:intron 55.0%
CAGGACGGAAAGGATAAGGC+AGG + tig0018287:12350-12369 None:intergenic 55.0%
CTGCCTTATCCTTTCCGTCC+TGG - tig0018287:12348-12367 Msa1365420:intron 55.0%
CACAGGTAACCAGGACGGAA+AGG + tig0018287:12360-12379 None:intergenic 55.0%
! CTTGGTGGCTAGTAGGTTGG+GGG - tig0018287:12432-12451 Msa1365420:intron 55.0%
ACTGAAGAGCCAGCTGCCTA+TGG - tig0018287:12892-12911 Msa1365420:intron 55.0%
TGTCCCCCCAGCATGCACTT+TGG + tig0018287:4175-4194 None:intergenic 60.0%
GTTCAAGTGTGGAGCCCCAC+TGG + tig0018287:6035-6054 None:intergenic 60.0%
GTCCCGGGTGGTCAACAACT+TGG - tig0018287:7219-7238 Msa1365420:intron 60.0%
GACCCTGAGCAGGAAGCTGT+TGG - tig0018287:7317-7336 Msa1365420:intron 60.0%
CTTACTTCCTGCGCTGCCTC+GGG - tig0018287:7568-7587 Msa1365420:intron 60.0%
CATTTATCCCGAGGCAGCGC+AGG + tig0018287:7578-7597 None:intergenic 60.0%
CTGCGCTGCCTCGGGATAAA+TGG - tig0018287:7576-7595 Msa1365420:intron 60.0%
TTGCGTTGCACTCACACGGG+TGG + tig0018287:8837-8856 None:intergenic 60.0%
ACTGAAGAGCCGGCTGCCTA+TGG - tig0018287:9192-9211 Msa1365420:intron 60.0%
CCATGGGCGGACCCATTCAA+AGG + tig0018287:11614-11633 None:intergenic 60.0%
CCTTTGAATGGGTCCGCCCA+TGG - tig0018287:11611-11630 Msa1365420:CDS 60.0%
! CCACTGGGACGTTGGTGAAG+AGG + tig0018287:12008-12027 None:intergenic 60.0%
CCTCTTCACCAACGTCCCAG+TGG - tig0018287:12005-12024 Msa1365420:CDS 60.0%
GACAGGATCCACTGGGACGT+TGG + tig0018287:12016-12035 None:intergenic 60.0%
CCTAACTCTCTTCCCCCCAC+TGG + tig0018287:12064-12083 None:intergenic 60.0%
CCAGTGGGGGGAAGAGAGTT+AGG - tig0018287:12061-12080 Msa1365420:CDS 60.0%
GTCATTCCGGGACGTCCAGA+TGG + tig0018287:12124-12143 None:intergenic 60.0%
CACTCTTCGTGTGGAGCCTG+TGG - tig0018287:12161-12180 Msa1365420:CDS 60.0%
TCTTCGTGTGGAGCCTGTGG+TGG - tig0018287:12164-12183 Msa1365420:CDS 60.0%
! AACTACCAGGGCACCTAGCC+AGG + tig0018287:12221-12240 None:intergenic 60.0%
AGGTGCAGCCCGTCCTTTGT+TGG - tig0018287:12262-12281 Msa1365420:intron 60.0%
! TGGTGGTTTTCCTGGGGGTG+CGG - tig0018287:12304-12323 Msa1365420:intron 60.0%
CGGACTTCAGCCAGCGCTTC+AGG + tig0018287:4414-4433 None:intergenic 65.0%
CAGGAGATGAAGGTCCCGGG+TGG - tig0018287:7207-7226 Msa1365420:intron 65.0%
! TGTCTTGGCGGACCCTGAGC+AGG - tig0018287:7307-7326 Msa1365420:intron 65.0%
! CGGGTGGCCTTGAGTCCTTC+AGG + tig0018287:8821-8840 None:intergenic 65.0%
TGGTTCCTGGCTAGGTGCCC+TGG - tig0018287:12213-12232 Msa1365420:CDS 65.0%
!! GGTGGTTTTCCTGGGGGTGC+GGG - tig0018287:12305-12324 Msa1365420:intron 65.0%
!! GTGGTTTTCCTGGGGGTGCG+GGG - tig0018287:12306-12325 Msa1365420:intron 65.0%
!! TGGTTTTCCTGGGGGTGCGG+GGG - tig0018287:12307-12326 Msa1365420:intron 65.0%
!! GGTTTTCCTGGGGGTGCGGG+GGG - tig0018287:12308-12327 Msa1365420:intron 70.0%
!! GTTTTCCTGGGGGTGCGGGG+GGG - tig0018287:12309-12328 Msa1365420:intron 70.0%
!! TCCTGGGGGTGCGGGGGGGT+TGG - tig0018287:12313-12332 Msa1365420:intron 80.0%
!! CCTGGGGGTGCGGGGGGGTT+GGG - tig0018287:12314-12333 Msa1365420:intron 80.0%
! GGGGTGCGGGGGGGTTGGGT+GGG - tig0018287:12318-12337 Msa1365420:intron 80.0%
! GGGTGCGGGGGGGTTGGGTG+GGG - tig0018287:12319-12338 Msa1365420:intron 80.0%
! GGTGCGGGGGGGTTGGGTGG+GGG - tig0018287:12320-12339 Msa1365420:intron 80.0%
! CCCAACCCCCCCGCACCCCC+AGG + tig0018287:12317-12336 None:intergenic 85.0%
!! GGGGGTGCGGGGGGGTTGGG+TGG - tig0018287:12317-12336 Msa1365420:intron 85.0%
Chromosome Type Strat End Strand Name
tig0018287 gene 3823 13373 3823 ID=Msa1365420;Name=Msa1365420
tig0018287 mRNA 3823 13373 3823 ID=Msa1365420-mRNA-1;Parent=Msa1365420;Name=Msa1365420-mRNA-1;_AED=0.21;_eAED=0.21;_QI=58|0.9|1|1|1|1|11|173|832
tig0018287 exon 3823 4031 3823 ID=Msa1365420-mRNA-1:exon:14567;Parent=Msa1365420-mRNA-1
tig0018287 exon 4152 4352 4152 ID=Msa1365420-mRNA-1:exon:14566;Parent=Msa1365420-mRNA-1
tig0018287 exon 7852 8052 7852 ID=Msa1365420-mRNA-1:exon:14565;Parent=Msa1365420-mRNA-1
tig0018287 exon 9457 9682 9457 ID=Msa1365420-mRNA-1:exon:14564;Parent=Msa1365420-mRNA-1
tig0018287 exon 9788 9986 9788 ID=Msa1365420-mRNA-1:exon:14563;Parent=Msa1365420-mRNA-1
tig0018287 exon 10272 10407 10272 ID=Msa1365420-mRNA-1:exon:14562;Parent=Msa1365420-mRNA-1
tig0018287 exon 10565 10666 10565 ID=Msa1365420-mRNA-1:exon:14561;Parent=Msa1365420-mRNA-1
tig0018287 exon 11028 11160 11028 ID=Msa1365420-mRNA-1:exon:14560;Parent=Msa1365420-mRNA-1
tig0018287 exon 11364 12265 11364 ID=Msa1365420-mRNA-1:exon:14559;Parent=Msa1365420-mRNA-1
tig0018287 exon 12690 12835 12690 ID=Msa1365420-mRNA-1:exon:14558;Parent=Msa1365420-mRNA-1
tig0018287 exon 13099 13373 13099 ID=Msa1365420-mRNA-1:exon:14557;Parent=Msa1365420-mRNA-1
tig0018287 five_prime_UTR 13316 13373 13316 ID=Msa1365420-mRNA-1:five_prime_utr;Parent=Msa1365420-mRNA-1
tig0018287 CDS 13099 13315 13099 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 12690 12835 12690 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 11364 12265 11364 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 11028 11160 11028 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 10565 10666 10565 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 10272 10407 10272 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 9788 9986 9788 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 9457 9682 9457 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 7852 8052 7852 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 4152 4352 4152 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 CDS 3996 4031 3996 ID=Msa1365420-mRNA-1:cds;Parent=Msa1365420-mRNA-1
tig0018287 three_prime_UTR 3823 3995 3823 ID=Msa1365420-mRNA-1:three_prime_utr;Parent=Msa1365420-mRNA-1
Gene Sequence

>Msa1365420

ATGGAAGATGGAGAATGGATTATGGTGCAAGGTCCTCCACATAAGGACTTGTGGAACCCAAGTTTAGCAAATGCAGATGATGATGAACCTTCAATGCCCTTGAAGGTTACTTTTTCTAGGCCTGCCAAGTACTGGACTGATGCCATCCCCATTGGCAATGGTCGTCTTGGTGCCATGATTTGGGGTGGCATACAGTCTGAAGTTCTACAGCTCAACGAGGACACACTATGGACTGGTATACCTGGCAACTACACCGACAAAAATGCTCCTGAAGCGCTGGCTGAAGTCCGAAAACTTGTCGATGACAGAAAATATTCCGAAGCTACAACTGCAGCTCTCAAATTGTCGGGACCTCCTGGTGAAGTATACCAACTTCTTGGCGATATTAAATTACAATTCGATGATTCTCATCTTAAATATTCCGAAGAGTCATATCACAGAGAACTTGATTTGGATAATGCAACAGCAAAAATAAAATATAATGTGGGTGATGTAGAATTTACCAGAGAGCATTTTGCTTCTAATCCCGACCAAGTGCTAGTGACAAAGTTTTCCACCAGCAAACCGGGGTCATTATCATTTACAGTATCTTTGGATAGCAAATTACATCACAATACGCGGTTAAGCAGCAAAAATCAAATAATAATGGAAGGAAGCTGTCCTGGCAAAAGGATCCCTCCACAAGTGAATTCAAGTGACGAACCAAAAGGAATTCAGTTTTCTGCAGTTCTTGATATGAAGCTCAGTAATGAAAAAGGAGTTATACATGTTTTGGATGATAAGAAGCTTAGAGTTGAAGGTTCAGATTGGGCTGTTTTGCTTCTGACAGCTTCCTCGTCGTTTGATGGTCCATTTACTGATCCTGAAAACTCTAAGAAAGATCCTACTTCCGAGTCCTTAAGAAAAATGAAGTTTGTGAAAAGCTTAAAATATGATGATGTTTATGCTCGTCACTTGGATGACTATCAAAATCTATTTCATCGGGTCTCATTGCAACTCTCTAAAAGTTCAAAGACTGTTTTAGGAAAACCTATTTTGGATGAAGAGAAAATAGTTTCTTGTCAAACTAACATATCTCAATTGAGAGGTGGTGATATTGTTCCAACTTCATCGAGAATCAAATCATTTCAAAATGATGAAGATCCTTCCGTTGTGGAGCTTTTGTTTCAATACGGTAGATATCTGCTAATTGCTTGTTCACGTCCTGGAACTCAGGTGGCAAACCTACAGGGTATATGGAACAAAGATGTTGTGCCTAAATGGGATGGGGCTCCACACTTGAACATAAATCTTCAAATGAATTATTGGCCGTCCCTTTCTTGCAACCTACATGAGTGTCAAGAGCCACTATTTGATCACATTTCCTCTTTGTCAGTCAATGGTAGTAAAACTGCAAAGATTTTGGGAAGACAAGATGATGCTATTATCAAAAGAGTATTTGAGTCTCAATCTAAGCTTCCTCCTATAAAAATTGCTAGGGATGGATCAATTATGGAATGGGCTGAAGATTTTCAGGACCCAGATGTACATCATCGGCATGTTTCACATTTGTTTGGCTTGTTTCCGGGGCACACAATAAATATCGAGAAAACTCCAGATCTTTGTAAAGCTGTGGATTATAGTCTAATTAAAAGAGGAGATGAAGGTCCCGGGTGGTCAACAACTTGGAAAGCTGCATTGTGGGCTTGTCTTCACAACAGTGAGCATGCATATCACATGATAAAACACTTGATTGTCTTGGCGGACCCTGAGCAGGAAGCTGTTGGTTTTGAAGGAGGACTTTACAGTAACCTGTTCACAGCACATCCTCCATTCCAAATTGACGCGAACTTTGGTTTTTCAGCAGCAATTGCAGAAATGCTTGTTCAAAGCACAACGAAGGACCTCTACTTACTTCCTGCGCTGCCTCGGGATAAATGGGCAAATGGTTGTGTGAAAGGATTAAAAGCACGTGGCGGGGTGACAGTCAACATCTGCTGGAAAGAAGGTGATCTGCATGAAGTTGGCCTTTGGTCAAAAAACCAGAATTCCGAAATGAGACTACATTATAGAGGGAACAAGTATGTGATGATTTTGTTGAATGGTGGAGTGCCTATTGCATTTGGTGGGACTGAAGAGCCGGCTGCCTATGGAGAGCTGATATCAATTGGCGGACTTGGTCCAAGTGTTAATGCAAAACTGAGTTCTACTATTGCAGAAATCCTTCAAACTAAACTATACATTGATAGCTCCAGATTCTACATCAAATTTTATGACTCCGAGTATATGTGTATTTTGGTGAATGGAGGAGTGCCAATTGCATTTGGTGGTACTGAAGAGCCAGCTGCCTATGGAGAACTGATATCAATTGGGGGCCTTGATCCAACTGTTAATGCAAAACTGAGTTCTACTATTGCACAAATCATTCAAACTAACTTACACATTCATAGCTCCCGATTCTACATCAAATTTTGTGATGTTCAGCCCTCATTTGTTGGGTTCAATGGCTCAACCTTTTGA

Protein sequence

>Msa1365420

MEDGEWIMVQGPPHKDLWNPSLANADDDEPSMPLKVTFSRPAKYWTDAIPIGNGRLGAMIWGGIQSEVLQLNEDTLWTGIPGNYTDKNAPEALAEVRKLVDDRKYSEATTAALKLSGPPGEVYQLLGDIKLQFDDSHLKYSEESYHRELDLDNATAKIKYNVGDVEFTREHFASNPDQVLVTKFSTSKPGSLSFTVSLDSKLHHNTRLSSKNQIIMEGSCPGKRIPPQVNSSDEPKGIQFSAVLDMKLSNEKGVIHVLDDKKLRVEGSDWAVLLLTASSSFDGPFTDPENSKKDPTSESLRKMKFVKSLKYDDVYARHLDDYQNLFHRVSLQLSKSSKTVLGKPILDEEKIVSCQTNISQLRGGDIVPTSSRIKSFQNDEDPSVVELLFQYGRYLLIACSRPGTQVANLQGIWNKDVVPKWDGAPHLNINLQMNYWPSLSCNLHECQEPLFDHISSLSVNGSKTAKILGRQDDAIIKRVFESQSKLPPIKIARDGSIMEWAEDFQDPDVHHRHVSHLFGLFPGHTINIEKTPDLCKAVDYSLIKRGDEGPGWSTTWKAALWACLHNSEHAYHMIKHLIVLADPEQEAVGFEGGLYSNLFTAHPPFQIDANFGFSAAIAEMLVQSTTKDLYLLPALPRDKWANGCVKGLKARGGVTVNICWKEGDLHEVGLWSKNQNSEMRLHYRGNKYVMILLNGGVPIAFGGTEEPAAYGELISIGGLGPSVNAKLSSTIAEILQTKLYIDSSRFYIKFYDSEYMCILVNGGVPIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKFCDVQPSFVGFNGSTF*