Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178920 | XP_013470067.1 | 96.820 | 283 | 9 | 0 | 1 | 283 | 1 | 283 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178920 | sp|Q9SHU7|TIC21_ARATH | 69.685 | 254 | 64 | 2 | 27 | 277 | 47 | 290 | 2.10e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178920 | A0A072W1E4 | 96.820 | 283 | 9 | 0 | 1 | 283 | 1 | 283 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0178920 | Msa0668940 | 0.800003 | 1.766753e-48 | -8.615850e-47 |
| Msa0178920 | Msa1026680 | 0.891451 | 3.924750e-74 | -8.615850e-47 |
| Msa0178920 | Msa1298180 | 0.805070 | 1.594031e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178920 | MtrunA17_Chr1g0208101 | 96.820 | 283 | 9 | 0 | 1 | 283 | 1 | 283 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178920 | AT2G15290.1 | 69.685 | 254 | 64 | 2 | 27 | 277 | 47 | 290 | 2.14e-116 | 337 |
Find 90 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATTCATTTCAGTGTTT+TGG | 0.190891 | 1_4:+66368176 | Msa0178920:CDS |
| GATTAGGTAGCTTAGGGTTT+TGG | 0.244550 | 1_4:+66368041 | Msa0178920:CDS |
| GGGATGGGATCTGCTATTCT+TGG | 0.261286 | 1_4:+66368592 | Msa0178920:CDS |
| CTCTGCCAACCCATATTATC+AGG | 0.265678 | 1_4:+66368660 | Msa0178920:CDS |
| GTCTACAGTTTGGACATGTT+TGG | 0.295925 | 1_4:+66369803 | Msa0178920:three_prime_UTR |
| GGAGCGATTCCCTGATAATA+TGG | 0.296780 | 1_4:-66368670 | None:intergenic |
| TGGTATAGCATTGAACCTTT+TGG | 0.302115 | 1_4:+66368570 | Msa0178920:CDS |
| TTCAAAATACTTGTTTGATA+AGG | 0.313176 | 1_4:+66369961 | Msa0178920:three_prime_UTR |
| ATGCGGAGAATTTCTATCTT+AGG | 0.316070 | 1_4:+66369985 | Msa0178920:three_prime_UTR |
| TCAAAATACTTGTTTGATAA+GGG | 0.330644 | 1_4:+66369962 | Msa0178920:three_prime_UTR |
| TTTGAGTTCTAGTTGTTTAC+GGG | 0.350642 | 1_4:-66367546 | None:intergenic |
| TCTACAGTTTGGACATGTTT+GGG | 0.351059 | 1_4:+66369804 | Msa0178920:three_prime_UTR |
| GAAGAACTGTTCAATTTAAG+AGG | 0.370176 | 1_4:-66367755 | None:intergenic |
| CACTCCTTCCGACGAAGAAT+CGG | 0.377653 | 1_4:+66367862 | Msa0178920:CDS |
| CAATCCTTTCTCATTTCCTT+GGG | 0.382936 | 1_4:+66369456 | Msa0178920:CDS |
| CTAACGCCGGCACCGTGTTC+CGG | 0.385142 | 1_4:+66367641 | Msa0178920:CDS |
| AGAAATGAAGGAACTGAAAG+AGG | 0.389344 | 1_4:-66367780 | None:intergenic |
| ACAATCCTTTCTCATTTCCT+TGG | 0.393630 | 1_4:+66369455 | Msa0178920:CDS |
| CTTACATTAGACAAGTTATG+AGG | 0.396140 | 1_4:-66369842 | None:intergenic |
| TGTGTAGGTGGCGAAGAGAT+TGG | 0.399741 | 1_4:+66367994 | Msa0178920:intron |
| TTCAAGCGATTAGGTAGCTT+AGG | 0.400195 | 1_4:+66368034 | Msa0178920:CDS |
| GCAGTTTACTGTCTACAGTT+TGG | 0.416301 | 1_4:+66369793 | Msa0178920:three_prime_UTR |
| CCTTCATTTCTCATCGTCAA+TGG | 0.425680 | 1_4:+66367792 | Msa0178920:CDS |
| ACCGTGTTCCGGCAGGTTCA+CGG | 0.430996 | 1_4:+66367652 | Msa0178920:CDS |
| CCTTATGCAAACTTCAGAAA+TGG | 0.431667 | 1_4:-66369536 | None:intergenic |
| GTAGTTAAAAGCTTACAAAA+TGG | 0.434722 | 1_4:+66368550 | Msa0178920:CDS |
| GCGAGGCATTTCAAGCGATT+AGG | 0.439777 | 1_4:+66368025 | Msa0178920:CDS |
| CCATTTCTGAAGTTTGCATA+AGG | 0.443202 | 1_4:+66369536 | Msa0178920:CDS |
| TCGACCAGTGATGCAACATC+AGG | 0.443984 | 1_4:+66369913 | Msa0178920:three_prime_UTR |
| AAACCCTGATGTTGCATCAC+TGG | 0.444763 | 1_4:-66369917 | None:intergenic |
| TGCACAGATTCTTTACAACT+TGG | 0.451047 | 1_4:-66369700 | None:intergenic |
| GGGAAGACGAGGGACGGAAA+TGG | 0.461563 | 1_4:-66367696 | None:intergenic |
| AAGACATCTAATGCGAGAAC+AGG | 0.464297 | 1_4:-66368703 | None:intergenic |
| GCTGTAGCATAAAACGTTGC+CGG | 0.476279 | 1_4:-66368139 | None:intergenic |
| TCAAGCGATTAGGTAGCTTA+GGG | 0.479000 | 1_4:+66368035 | Msa0178920:CDS |
| GGATGGGATCTGCTATTCTT+GGG | 0.479726 | 1_4:+66368593 | Msa0178920:CDS |
| CGCCGGCACCGTGTTCCGGC+AGG | 0.498649 | 1_4:+66367645 | Msa0178920:CDS |
| CTTCAGCAATTCAAGATCCA+TGG | 0.505559 | 1_4:+66369754 | Msa0178920:three_prime_UTR |
| TAGAACTCAAAAGTGAGAAT+CGG | 0.509444 | 1_4:+66367558 | Msa0178920:five_prime_UTR |
| AACCTGCCGGAACACGGTGC+CGG | 0.519126 | 1_4:-66367647 | None:intergenic |
| TATTATCAGGGAATCGCTCC+TGG | 0.521565 | 1_4:+66368673 | Msa0178920:CDS |
| GCCGTGAACCTGCCGGAACA+CGG | 0.522890 | 1_4:-66367653 | None:intergenic |
| CTTGGGATGCAAGCCACAGT+TGG | 0.527632 | 1_4:+66368610 | Msa0178920:CDS |
| TACTTGTTTGATAAGGGATG+CGG | 0.529460 | 1_4:+66369968 | Msa0178920:three_prime_UTR |
| GAAATGAAGGAACTGAAAGA+GGG | 0.531980 | 1_4:-66367779 | None:intergenic |
| AGTTGGATTCTTAGTTGCAA+AGG | 0.532071 | 1_4:+66368627 | Msa0178920:CDS |
| GTGCAAAATGTGACTCTAGC+TGG | 0.532807 | 1_4:-66370018 | None:intergenic |
| TTCAATTTAAGAGGGAGTGA+GGG | 0.544352 | 1_4:-66367746 | None:intergenic |
| GAGCGATTCCCTGATAATAT+GGG | 0.545660 | 1_4:-66368669 | None:intergenic |
| AGAAGAAGCGGTTACTGTGA+AGG | 0.546077 | 1_4:-66367822 | None:intergenic |
| GAAGCCCAAGGAAATGAGAA+AGG | 0.552017 | 1_4:-66369460 | None:intergenic |
| TAGCAGATCCCATCCCCAAA+AGG | 0.554594 | 1_4:-66368585 | None:intergenic |
| CCATTGACGATGAGAAATGA+AGG | 0.558196 | 1_4:-66367792 | None:intergenic |
| GAAGAAGCGGTTACTGTGAA+GGG | 0.558789 | 1_4:-66367821 | None:intergenic |
| GCGTAGTTGTTCGATTTCTG+TGG | 0.559647 | 1_4:-66367605 | None:intergenic |
| CCACTGTGATAAACTGCCCA+TGG | 0.562764 | 1_4:-66369771 | None:intergenic |
| TTTAACTACATCAGATCGAG+GGG | 0.565750 | 1_4:-66368536 | None:intergenic |
| TGGCGCCGCCGTGAACCTGC+CGG | 0.569949 | 1_4:-66367660 | None:intergenic |
| CTGATAATATGGGTTGGCAG+AGG | 0.570282 | 1_4:-66368659 | None:intergenic |
| TGCAGAGGATTGAGAAGAAG+CGG | 0.571740 | 1_4:-66367834 | None:intergenic |
| AAGAACTGTTCAATTTAAGA+GGG | 0.578373 | 1_4:-66367754 | None:intergenic |
| AGAATTGTTCGGGGAAGACG+AGG | 0.581441 | 1_4:-66367707 | None:intergenic |
| TTCAGCAATTCAAGATCCAT+GGG | 0.582907 | 1_4:+66369755 | Msa0178920:three_prime_UTR |
| CGACCAGTGATGCAACATCA+GGG | 0.587764 | 1_4:+66369914 | Msa0178920:three_prime_UTR |
| GTTCAATTTAAGAGGGAGTG+AGG | 0.594846 | 1_4:-66367747 | None:intergenic |
| TGTTCGGGGAAGACGAGGGA+CGG | 0.600639 | 1_4:-66367702 | None:intergenic |
| GCTATATTCGCCTCTCTGAG+AGG | 0.604639 | 1_4:+66368206 | Msa0178920:CDS |
| ATGTCAACTACCAACGAAGA+GGG | 0.604733 | 1_4:-66369668 | None:intergenic |
| TTACATTAGACAAGTTATGA+GGG | 0.612322 | 1_4:-66369841 | None:intergenic |
| GAAATGGCTGAGATTGAGAG+TGG | 0.616067 | 1_4:-66367680 | None:intergenic |
| GCGAGAACAGGACTTGAACC+AGG | 0.619241 | 1_4:-66368691 | None:intergenic |
| CCAGCGAGAAAAGAAGCCCA+AGG | 0.620312 | 1_4:-66369472 | None:intergenic |
| TCAATTTAAGAGGGAGTGAG+GGG | 0.636040 | 1_4:-66367745 | None:intergenic |
| GATTCCCTGATAATATGGGT+TGG | 0.640688 | 1_4:-66368665 | None:intergenic |
| GGAAGGAGTGAAAGCTGCAG+AGG | 0.643548 | 1_4:-66367849 | None:intergenic |
| GATGTCAACTACCAACGAAG+AGG | 0.646205 | 1_4:-66369669 | None:intergenic |
| AGAAATGGAAGAGCTTCTGA+CGG | 0.648983 | 1_4:-66369521 | None:intergenic |
| TCTGCCAACCCATATTATCA+GGG | 0.650984 | 1_4:+66368661 | Msa0178920:CDS |
| TACCGGAAAAGTGACATCGC+CGG | 0.662744 | 1_4:+66368120 | Msa0178920:CDS |
| AGAGAGGCGAATATAGCCAA+AGG | 0.665331 | 1_4:-66368200 | None:intergenic |
| GAATTGTTCGGGGAAGACGA+GGG | 0.667717 | 1_4:-66367706 | None:intergenic |
| TGCAACTAAGAATCCAACTG+TGG | 0.672275 | 1_4:-66368623 | None:intergenic |
| AACTGCAAATGATCCTACCA+AGG | 0.682014 | 1_4:+66368237 | Msa0178920:CDS |
| AATGGAAGAGCTTCTGACGG+CGG | 0.683924 | 1_4:-66369518 | None:intergenic |
| TTCTACGAAGCCTCTCAGAG+AGG | 0.714642 | 1_4:-66368216 | None:intergenic |
| AATGCAAACTCTTCTAACGC+CGG | 0.716376 | 1_4:+66367628 | Msa0178920:exon |
| TTAACTACATCAGATCGAGG+GGG | 0.724482 | 1_4:-66368535 | None:intergenic |
| AGAGATTGGAGAAAACTGCG+AGG | 0.729408 | 1_4:+66368008 | Msa0178920:CDS |
| CCATGGGCAGTTTATCACAG+TGG | 0.733786 | 1_4:+66369771 | Msa0178920:three_prime_UTR |
| GTGTTCCGGCAGGTTCACGG+CGG | 0.774246 | 1_4:+66367655 | Msa0178920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTTAAATAAGAAATT+AGG | + | chr1_4:66368985-66369004 | Msa0178920:intron | 10.0% |
| !! | AATTGTTAAATAAGAAATTA+GGG | + | chr1_4:66368986-66369005 | Msa0178920:intron | 10.0% |
| !!! | TCAATTTTTTTTAATAGAAA+TGG | + | chr1_4:66369185-66369204 | Msa0178920:intron | 10.0% |
| !! | TTAGTTATTATTTACAATGT+TGG | + | chr1_4:66368485-66368504 | Msa0178920:intron | 15.0% |
| !! | ATTGTTAAATAAGAAATTAG+GGG | + | chr1_4:66368987-66369006 | Msa0178920:intron | 15.0% |
| !!! | ATAATTTCAAAATTGCATTT+TGG | - | chr1_4:66369885-66369904 | None:intergenic | 15.0% |
| !! | TGAAATTGAATTCAATTTCT+AGG | + | chr1_4:66367939-66367958 | Msa0178920:intron | 20.0% |
| !! | GAAATTGAATTCAATTTCTA+GGG | + | chr1_4:66367940-66367959 | Msa0178920:intron | 20.0% |
| !!! | ATGAATAATTGAATTTGCTT+AGG | + | chr1_4:66368284-66368303 | Msa0178920:intron | 20.0% |
| !! | ATTAACATTATTAGCAAAGA+AGG | - | chr1_4:66368847-66368866 | None:intergenic | 20.0% |
| !! | AATATTATTCTTTCCTTTAC+AGG | + | chr1_4:66369421-66369440 | Msa0178920:intron | 20.0% |
| !! | TTCAAAATACTTGTTTGATA+AGG | + | chr1_4:66369961-66369980 | Msa0178920:three_prime_UTR | 20.0% |
| !! | TCAAAATACTTGTTTGATAA+GGG | + | chr1_4:66369962-66369981 | Msa0178920:three_prime_UTR | 20.0% |
| ! | AAAAGCCCAAAAATAAAACT+GGG | + | chr1_4:66367522-66367541 | Msa0178920:five_prime_UTR | 25.0% |
| !!! | TTTTGAGTTCTAGTTGTTTA+CGG | - | chr1_4:66367550-66367569 | None:intergenic | 25.0% |
| !! | AATTTTGCTTCAGAATTGTT+CGG | - | chr1_4:66367721-66367740 | None:intergenic | 25.0% |
| ! | AAGAACTGTTCAATTTAAGA+GGG | - | chr1_4:66367757-66367776 | None:intergenic | 25.0% |
| ! | TGTTAATTGTTCTAACTGTT+TGG | + | chr1_4:66368317-66368336 | Msa0178920:intron | 25.0% |
| !! | TTAAGTTGTTTATCTAAGCA+TGG | - | chr1_4:66368354-66368373 | None:intergenic | 25.0% |
| ! | ACAACTTAATTAAACGCTTA+TGG | + | chr1_4:66368365-66368384 | Msa0178920:intron | 25.0% |
| ! | GTAGTTAAAAGCTTACAAAA+TGG | + | chr1_4:66368550-66368569 | Msa0178920:CDS | 25.0% |
| ! | TATAAAATTGCCTTCAATAG+AGG | + | chr1_4:66368758-66368777 | Msa0178920:intron | 25.0% |
| !!! | TAAACGTTTTAATCATCCAA+TGG | + | chr1_4:66368868-66368887 | Msa0178920:intron | 25.0% |
| ! | CAATGGTAAACTATGTATAA+GGG | + | chr1_4:66368885-66368904 | Msa0178920:intron | 25.0% |
| ! | TTTAAACAAACTATCGACAA+TGG | - | chr1_4:66368967-66368986 | None:intergenic | 25.0% |
| !! | ATGATTAGACTGTTGTTATT+TGG | + | chr1_4:66369011-66369030 | Msa0178920:intron | 25.0% |
| !!! | TGATTAGACTGTTGTTATTT+GGG | + | chr1_4:66369012-66369031 | Msa0178920:intron | 25.0% |
| !! | TTTTCTTGAATCATGAAACT+AGG | + | chr1_4:66369237-66369256 | Msa0178920:intron | 25.0% |
| ! | TAGGAAATAGAACAAAAACT+AGG | + | chr1_4:66369256-66369275 | Msa0178920:intron | 25.0% |
| ! | TTACATTAGACAAGTTATGA+GGG | - | chr1_4:66369844-66369863 | None:intergenic | 25.0% |
| GAAAAGCCCAAAAATAAAAC+TGG | + | chr1_4:66367521-66367540 | Msa0178920:five_prime_UTR | 30.0% | |
| ! | TTTGAGTTCTAGTTGTTTAC+GGG | - | chr1_4:66367549-66367568 | None:intergenic | 30.0% |
| TAGAACTCAAAAGTGAGAAT+CGG | + | chr1_4:66367558-66367577 | Msa0178920:five_prime_UTR | 30.0% | |
| ! | ATTTTGCTTCAGAATTGTTC+GGG | - | chr1_4:66367720-66367739 | None:intergenic | 30.0% |
| GAAGAACTGTTCAATTTAAG+AGG | - | chr1_4:66367758-66367777 | None:intergenic | 30.0% | |
| ! | TGACAATGTTGTTATTGTGT+AGG | + | chr1_4:66367979-66367998 | Msa0178920:intron | 30.0% |
| TGAACTAAAAACAAGTACCT+TGG | - | chr1_4:66368257-66368276 | None:intergenic | 30.0% | |
| TCAAATGAACCAATTCAAAC+AGG | + | chr1_4:66368421-66368440 | Msa0178920:intron | 30.0% | |
| CAAACAGTGATTTCACATTA+AGG | - | chr1_4:66368447-66368466 | None:intergenic | 30.0% | |
| !! | TTTTAACTACATCAGATCGA+GGG | - | chr1_4:66368540-66368559 | None:intergenic | 30.0% |
| ACTGAAATTTCCTCTATTGA+AGG | - | chr1_4:66368771-66368790 | None:intergenic | 30.0% | |
| CCTTATACATAGTTTACCAT+TGG | - | chr1_4:66368887-66368906 | None:intergenic | 30.0% | |
| CCAATGGTAAACTATGTATA+AGG | + | chr1_4:66368884-66368903 | Msa0178920:intron | 30.0% | |
| !! | GATTAGACTGTTGTTATTTG+GGG | + | chr1_4:66369013-66369032 | Msa0178920:intron | 30.0% |
| !! | ATTAGACTGTTGTTATTTGG+GGG | + | chr1_4:66369014-66369033 | Msa0178920:intron | 30.0% |
| TGTTGGAAGGTTTGTAATAT+GGG | - | chr1_4:66369103-66369122 | None:intergenic | 30.0% | |
| TTGTTGGAAGGTTTGTAATA+TGG | - | chr1_4:66369104-66369123 | None:intergenic | 30.0% | |
| ATTACAAACCTTCCAACAAA+AGG | + | chr1_4:66369105-66369124 | Msa0178920:intron | 30.0% | |
| CTTCCAACAAAAGGAAAAAT+CGG | + | chr1_4:66369114-66369133 | Msa0178920:intron | 30.0% | |
| TCATGATTCAAGAAAAGCAA+TGG | - | chr1_4:66369233-66369252 | None:intergenic | 30.0% | |
| GTGAGTAACATTAATTGTGT+TGG | + | chr1_4:66369355-66369374 | Msa0178920:intron | 30.0% | |
| ATTGTGTTGGATAGAATCTA+TGG | + | chr1_4:66369368-66369387 | Msa0178920:intron | 30.0% | |
| AAGTCTGGTAGAAAGAATTT+AGG | + | chr1_4:66369567-66369586 | Msa0178920:intron | 30.0% | |
| CTTACATTAGACAAGTTATG+AGG | - | chr1_4:66369845-66369864 | None:intergenic | 30.0% | |
| ! | TTTTGCTTCAGAATTGTTCG+GGG | - | chr1_4:66367719-66367738 | None:intergenic | 35.0% |
| TTCAATTTAAGAGGGAGTGA+GGG | - | chr1_4:66367749-66367768 | None:intergenic | 35.0% | |
| GAAATGAAGGAACTGAAAGA+GGG | - | chr1_4:66367782-66367801 | None:intergenic | 35.0% | |
| AGAAATGAAGGAACTGAAAG+AGG | - | chr1_4:66367783-66367802 | None:intergenic | 35.0% | |
| ! | CAATGTTGTTATTGTGTAGG+TGG | + | chr1_4:66367982-66368001 | Msa0178920:intron | 35.0% |
| ! | ATTAGGTAGCTTAGGGTTTT+GGG | + | chr1_4:66368042-66368061 | Msa0178920:CDS | 35.0% |
| ! | CTGCATTCATTTCAGTGTTT+TGG | + | chr1_4:66368176-66368195 | Msa0178920:CDS | 35.0% |
| !!! | ATTTCAGTGTTTTGGTCCTT+TGG | + | chr1_4:66368184-66368203 | Msa0178920:CDS | 35.0% |
| CTAAAAACAAGTACCTTGGT+AGG | - | chr1_4:66368253-66368272 | None:intergenic | 35.0% | |
| ACATTAAGGCCTGTTTGAAT+TGG | - | chr1_4:66368433-66368452 | None:intergenic | 35.0% | |
| TTTAACTACATCAGATCGAG+GGG | - | chr1_4:66368539-66368558 | None:intergenic | 35.0% | |
| !! | CTTTTAACTACATCAGATCG+AGG | - | chr1_4:66368541-66368560 | None:intergenic | 35.0% |
| !! | TGGTATAGCATTGAACCTTT+TGG | + | chr1_4:66368570-66368589 | Msa0178920:CDS | 35.0% |
| !! | GGTATAGCATTGAACCTTTT+GGG | + | chr1_4:66368571-66368590 | Msa0178920:CDS | 35.0% |
| !! | GTATAGCATTGAACCTTTTG+GGG | + | chr1_4:66368572-66368591 | Msa0178920:CDS | 35.0% |
| AGTTGGATTCTTAGTTGCAA+AGG | + | chr1_4:66368627-66368646 | Msa0178920:CDS | 35.0% | |
| ! | TCTCGCATTAGATGTCTTTT+TGG | + | chr1_4:66368708-66368727 | Msa0178920:CDS | 35.0% |
| !! | ATTAGATGTCTTTTTGGTGC+AGG | + | chr1_4:66368714-66368733 | Msa0178920:CDS | 35.0% |
| TTGGTGCAGGTAAAACTTAT+TGG | + | chr1_4:66368727-66368746 | Msa0178920:intron | 35.0% | |
| AGGTCAAATTTGCAAAACAC+AGG | - | chr1_4:66368827-66368846 | None:intergenic | 35.0% | |
| ! | ACTCCATCTGTATTGTTTTC+TGG | + | chr1_4:66368933-66368952 | Msa0178920:intron | 35.0% |
| ATGCCAGAAAACAATACAGA+TGG | - | chr1_4:66368939-66368958 | None:intergenic | 35.0% | |
| ! | CGATTTTTCCTTTTGTTGGA+AGG | - | chr1_4:66369116-66369135 | None:intergenic | 35.0% |
| !!! | ACACCGATTTTTCCTTTTGT+TGG | - | chr1_4:66369120-66369139 | None:intergenic | 35.0% |
| !! | ACTCACATTAGTTTGTTGCT+TGG | - | chr1_4:66369341-66369360 | None:intergenic | 35.0% |
| ATTCTTTCCTTTACAGGCTT+CGG | + | chr1_4:66369427-66369446 | Msa0178920:intron | 35.0% | |
| ACAATCCTTTCTCATTTCCT+TGG | + | chr1_4:66369455-66369474 | Msa0178920:CDS | 35.0% | |
| CAATCCTTTCTCATTTCCTT+GGG | + | chr1_4:66369456-66369475 | Msa0178920:CDS | 35.0% | |
| CCTTATGCAAACTTCAGAAA+TGG | - | chr1_4:66369539-66369558 | None:intergenic | 35.0% | |
| !! | CCATTTCTGAAGTTTGCATA+AGG | + | chr1_4:66369536-66369555 | Msa0178920:CDS | 35.0% |
| AATTCTTTCTACCAGACTTG+AGG | - | chr1_4:66369566-66369585 | None:intergenic | 35.0% | |
| !!! | GAAATGAGGGTACACTTTTT+TGG | - | chr1_4:66369595-66369614 | None:intergenic | 35.0% |
| AAAACAACCACTGGAAATGA+GGG | - | chr1_4:66369608-66369627 | None:intergenic | 35.0% | |
| TGCACAGATTCTTTACAACT+TGG | - | chr1_4:66369703-66369722 | None:intergenic | 35.0% | |
| TTCAGCAATTCAAGATCCAT+GGG | + | chr1_4:66369755-66369774 | Msa0178920:three_prime_UTR | 35.0% | |
| TCTACAGTTTGGACATGTTT+GGG | + | chr1_4:66369804-66369823 | Msa0178920:three_prime_UTR | 35.0% | |
| TACTTGTTTGATAAGGGATG+CGG | + | chr1_4:66369968-66369987 | Msa0178920:three_prime_UTR | 35.0% | |
| ATGCGGAGAATTTCTATCTT+AGG | + | chr1_4:66369985-66370004 | Msa0178920:three_prime_UTR | 35.0% | |
| !!! | CGGGTCCCAGTTTTATTTTT+GGG | - | chr1_4:66367530-66367549 | None:intergenic | 40.0% |
| !!! | ACGGGTCCCAGTTTTATTTT+TGG | - | chr1_4:66367531-66367550 | None:intergenic | 40.0% |
| AATGCAAACTCTTCTAACGC+CGG | + | chr1_4:66367628-66367647 | Msa0178920:exon | 40.0% | |
| TCAATTTAAGAGGGAGTGAG+GGG | - | chr1_4:66367748-66367767 | None:intergenic | 40.0% | |
| GTTCAATTTAAGAGGGAGTG+AGG | - | chr1_4:66367750-66367769 | None:intergenic | 40.0% | |
| CCATTGACGATGAGAAATGA+AGG | - | chr1_4:66367795-66367814 | None:intergenic | 40.0% | |
| CCTTCATTTCTCATCGTCAA+TGG | + | chr1_4:66367792-66367811 | Msa0178920:CDS | 40.0% | |
| !!! | TGCTTTTTCCGATTCTTCGT+CGG | - | chr1_4:66367873-66367892 | None:intergenic | 40.0% |
| GGAAAAAGCAAAACTCGATC+AGG | + | chr1_4:66367883-66367902 | Msa0178920:CDS | 40.0% | |
| TTCAAGCGATTAGGTAGCTT+AGG | + | chr1_4:66368034-66368053 | Msa0178920:CDS | 40.0% | |
| TCAAGCGATTAGGTAGCTTA+GGG | + | chr1_4:66368035-66368054 | Msa0178920:CDS | 40.0% | |
| ! | GATTAGGTAGCTTAGGGTTT+TGG | + | chr1_4:66368041-66368060 | Msa0178920:CDS | 40.0% |
| ! | TTAGGTAGCTTAGGGTTTTG+GGG | + | chr1_4:66368043-66368062 | Msa0178920:CDS | 40.0% |
| !! | TCGTTTTCCGTTGTTGTTAC+CGG | + | chr1_4:66368103-66368122 | Msa0178920:CDS | 40.0% |
| ! | CACTTTTCCGGTAACAACAA+CGG | - | chr1_4:66368113-66368132 | None:intergenic | 40.0% |
| AACTGCAAATGATCCTACCA+AGG | + | chr1_4:66368237-66368256 | Msa0178920:CDS | 40.0% | |
| !! | GTTGGTTGAGCTTTTAGTTG+TGG | + | chr1_4:66368503-66368522 | Msa0178920:intron | 40.0% |
| !! | GAGCTTTTAGTTGTGGTTTC+AGG | + | chr1_4:66368510-66368529 | Msa0178920:intron | 40.0% |
| TTAACTACATCAGATCGAGG+GGG | - | chr1_4:66368538-66368557 | None:intergenic | 40.0% | |
| TGCAACTAAGAATCCAACTG+TGG | - | chr1_4:66368626-66368645 | None:intergenic | 40.0% | |
| TCTGCCAACCCATATTATCA+GGG | + | chr1_4:66368661-66368680 | Msa0178920:CDS | 40.0% | |
| GATTCCCTGATAATATGGGT+TGG | - | chr1_4:66368668-66368687 | None:intergenic | 40.0% | |
| GAGCGATTCCCTGATAATAT+GGG | - | chr1_4:66368672-66368691 | None:intergenic | 40.0% | |
| AAGACATCTAATGCGAGAAC+AGG | - | chr1_4:66368706-66368725 | None:intergenic | 40.0% | |
| !! | AGGGCATCATTTTCCTATTC+TGG | + | chr1_4:66368904-66368923 | Msa0178920:intron | 40.0% |
| ATGGAGTTGTTCTCCAGAAT+AGG | - | chr1_4:66368920-66368939 | None:intergenic | 40.0% | |
| AGAAATGGAAGAGCTTCTGA+CGG | - | chr1_4:66369524-66369543 | None:intergenic | 40.0% | |
| GAAAACAACCACTGGAAATG+AGG | - | chr1_4:66369609-66369628 | None:intergenic | 40.0% | |
| !! | TCCAGTGGTTGTTTTCTTCA+TGG | + | chr1_4:66369613-66369632 | Msa0178920:intron | 40.0% |
| TCCATGAAGAAAACAACCAC+TGG | - | chr1_4:66369617-66369636 | None:intergenic | 40.0% | |
| !!! | CTTTTTAAGACCCTCTTCGT+TGG | + | chr1_4:66369658-66369677 | Msa0178920:three_prime_UTR | 40.0% |
| ATGTCAACTACCAACGAAGA+GGG | - | chr1_4:66369671-66369690 | None:intergenic | 40.0% | |
| CTTCAGCAATTCAAGATCCA+TGG | + | chr1_4:66369754-66369773 | Msa0178920:three_prime_UTR | 40.0% | |
| GCAGTTTACTGTCTACAGTT+TGG | + | chr1_4:66369793-66369812 | Msa0178920:three_prime_UTR | 40.0% | |
| GTCTACAGTTTGGACATGTT+TGG | + | chr1_4:66369803-66369822 | Msa0178920:three_prime_UTR | 40.0% | |
| GCGTAGTTGTTCGATTTCTG+TGG | - | chr1_4:66367608-66367627 | None:intergenic | 45.0% | |
| GAAATGGCTGAGATTGAGAG+TGG | - | chr1_4:66367683-66367702 | None:intergenic | 45.0% | |
| GAAGAAGCGGTTACTGTGAA+GGG | - | chr1_4:66367824-66367843 | None:intergenic | 45.0% | |
| AGAAGAAGCGGTTACTGTGA+AGG | - | chr1_4:66367825-66367844 | None:intergenic | 45.0% | |
| TGCAGAGGATTGAGAAGAAG+CGG | - | chr1_4:66367837-66367856 | None:intergenic | 45.0% | |
| ! | TTTTCCGATTCTTCGTCGGA+AGG | - | chr1_4:66367869-66367888 | None:intergenic | 45.0% |
| AGAGATTGGAGAAAACTGCG+AGG | + | chr1_4:66368008-66368027 | Msa0178920:CDS | 45.0% | |
| GCTGTAGCATAAAACGTTGC+CGG | - | chr1_4:66368142-66368161 | None:intergenic | 45.0% | |
| ! | GCAACGTTTTATGCTACAGC+TGG | + | chr1_4:66368142-66368161 | Msa0178920:CDS | 45.0% |
| ! | ACGTTTTATGCTACAGCTGG+TGG | + | chr1_4:66368145-66368164 | Msa0178920:CDS | 45.0% |
| AGAGAGGCGAATATAGCCAA+AGG | - | chr1_4:66368203-66368222 | None:intergenic | 45.0% | |
| !! | AGCATTGAACCTTTTGGGGA+TGG | + | chr1_4:66368576-66368595 | Msa0178920:CDS | 45.0% |
| !! | GCATTGAACCTTTTGGGGAT+GGG | + | chr1_4:66368577-66368596 | Msa0178920:CDS | 45.0% |
| GGATGGGATCTGCTATTCTT+GGG | + | chr1_4:66368593-66368612 | Msa0178920:CDS | 45.0% | |
| !! | CTGATAATATGGGTTGGCAG+AGG | - | chr1_4:66368662-66368681 | None:intergenic | 45.0% |
| CTCTGCCAACCCATATTATC+AGG | + | chr1_4:66368660-66368679 | Msa0178920:CDS | 45.0% | |
| GGAGCGATTCCCTGATAATA+TGG | - | chr1_4:66368673-66368692 | None:intergenic | 45.0% | |
| TATTATCAGGGAATCGCTCC+TGG | + | chr1_4:66368673-66368692 | Msa0178920:CDS | 45.0% | |
| ! | TGTTATTTGGGGGTGAAGTG+TGG | + | chr1_4:66369024-66369043 | Msa0178920:intron | 45.0% |
| !! | TAGAATCTATGGTGCCACTG+TGG | + | chr1_4:66369379-66369398 | Msa0178920:intron | 45.0% |
| TTACTTGAAGCCTACCACAG+TGG | - | chr1_4:66369396-66369415 | None:intergenic | 45.0% | |
| GAAGCCCAAGGAAATGAGAA+AGG | - | chr1_4:66369463-66369482 | None:intergenic | 45.0% | |
| CATAAGGTATGCCTCAAGTC+TGG | + | chr1_4:66369552-66369571 | Msa0178920:intron | 45.0% | |
| AAGTGTACCCTCATTTCCAG+TGG | + | chr1_4:66369598-66369617 | Msa0178920:intron | 45.0% | |
| GATGTCAACTACCAACGAAG+AGG | - | chr1_4:66369672-66369691 | None:intergenic | 45.0% | |
| AAACCCTGATGTTGCATCAC+TGG | - | chr1_4:66369920-66369939 | None:intergenic | 45.0% | |
| GAATTGTTCGGGGAAGACGA+GGG | - | chr1_4:66367709-66367728 | None:intergenic | 50.0% | |
| AGAATTGTTCGGGGAAGACG+AGG | - | chr1_4:66367710-66367729 | None:intergenic | 50.0% | |
| CACTCCTTCCGACGAAGAAT+CGG | + | chr1_4:66367862-66367881 | Msa0178920:CDS | 50.0% | |
| TGTGTAGGTGGCGAAGAGAT+TGG | + | chr1_4:66367994-66368013 | Msa0178920:intron | 50.0% | |
| ! | GCGAGGCATTTCAAGCGATT+AGG | + | chr1_4:66368025-66368044 | Msa0178920:CDS | 50.0% |
| TACCGGAAAAGTGACATCGC+CGG | + | chr1_4:66368120-66368139 | Msa0178920:CDS | 50.0% | |
| GCTATATTCGCCTCTCTGAG+AGG | + | chr1_4:66368206-66368225 | Msa0178920:CDS | 50.0% | |
| TTCTACGAAGCCTCTCAGAG+AGG | - | chr1_4:66368219-66368238 | None:intergenic | 50.0% | |
| TAGCAGATCCCATCCCCAAA+AGG | - | chr1_4:66368588-66368607 | None:intergenic | 50.0% | |
| GGGATGGGATCTGCTATTCT+TGG | + | chr1_4:66368592-66368611 | Msa0178920:CDS | 50.0% | |
| TTTGGGGGTGAAGTGTGGAT+TGG | + | chr1_4:66369029-66369048 | Msa0178920:intron | 50.0% | |
| !! | ATCTATGGTGCCACTGTGGT+AGG | + | chr1_4:66369383-66369402 | Msa0178920:intron | 50.0% |
| GTGTTTGCCGAAGCCTGTAA+AGG | - | chr1_4:66369437-66369456 | None:intergenic | 50.0% | |
| AATGGAAGAGCTTCTGACGG+CGG | - | chr1_4:66369521-66369540 | None:intergenic | 50.0% | |
| CCACTGTGATAAACTGCCCA+TGG | - | chr1_4:66369774-66369793 | None:intergenic | 50.0% | |
| CCATGGGCAGTTTATCACAG+TGG | + | chr1_4:66369771-66369790 | Msa0178920:three_prime_UTR | 50.0% | |
| TCGACCAGTGATGCAACATC+AGG | + | chr1_4:66369913-66369932 | Msa0178920:three_prime_UTR | 50.0% | |
| CGACCAGTGATGCAACATCA+GGG | + | chr1_4:66369914-66369933 | Msa0178920:three_prime_UTR | 50.0% | |
| GGAAGGAGTGAAAGCTGCAG+AGG | - | chr1_4:66367852-66367871 | None:intergenic | 55.0% | |
| !!! | TGCCGGCGATGTCACTTTTC+CGG | - | chr1_4:66368125-66368144 | None:intergenic | 55.0% |
| CTTGGGATGCAAGCCACAGT+TGG | + | chr1_4:66368610-66368629 | Msa0178920:CDS | 55.0% | |
| GCGAGAACAGGACTTGAACC+AGG | - | chr1_4:66368694-66368713 | None:intergenic | 55.0% | |
| CCAGCGAGAAAAGAAGCCCA+AGG | - | chr1_4:66369475-66369494 | None:intergenic | 55.0% | |
| ! | CCTTGGGCTTCTTTTCTCGC+TGG | + | chr1_4:66369472-66369491 | Msa0178920:CDS | 55.0% |
| ACCGTGTTCCGGCAGGTTCA+CGG | + | chr1_4:66367652-66367671 | Msa0178920:CDS | 60.0% | |
| GGGAAGACGAGGGACGGAAA+TGG | - | chr1_4:66367699-66367718 | None:intergenic | 60.0% | |
| TGTTCGGGGAAGACGAGGGA+CGG | - | chr1_4:66367705-66367724 | None:intergenic | 60.0% | |
| !! | GGGGGTGAAGTGTGGATTGG+TGG | + | chr1_4:66369032-66369051 | Msa0178920:intron | 60.0% |
| CTAACGCCGGCACCGTGTTC+CGG | + | chr1_4:66367641-66367660 | Msa0178920:CDS | 65.0% | |
| AACCTGCCGGAACACGGTGC+CGG | - | chr1_4:66367650-66367669 | None:intergenic | 65.0% | |
| GCCGTGAACCTGCCGGAACA+CGG | - | chr1_4:66367656-66367675 | None:intergenic | 65.0% | |
| GTGTTCCGGCAGGTTCACGG+CGG | + | chr1_4:66367655-66367674 | Msa0178920:CDS | 65.0% | |
| TGGCGCCGCCGTGAACCTGC+CGG | - | chr1_4:66367663-66367682 | None:intergenic | 75.0% | |
| ! | CGCCGGCACCGTGTTCCGGC+AGG | + | chr1_4:66367645-66367664 | Msa0178920:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66367521 | 66370038 | 66367521 | ID=Msa0178920;Name=Msa0178920 |
| chr1_4 | mRNA | 66367521 | 66370038 | 66367521 | ID=Msa0178920-mRNA-1;Parent=Msa0178920;Name=Msa0178920-mRNA-1;_AED=0.09;_eAED=0.09;_QI=108|1|1|1|0.6|0.5|6|341|283 |
| chr1_4 | exon | 66367521 | 66367904 | 66367521 | ID=Msa0178920-mRNA-1:exon:21658;Parent=Msa0178920-mRNA-1 |
| chr1_4 | exon | 66368001 | 66368258 | 66368001 | ID=Msa0178920-mRNA-1:exon:21659;Parent=Msa0178920-mRNA-1 |
| chr1_4 | exon | 66368532 | 66368735 | 66368532 | ID=Msa0178920-mRNA-1:exon:21660;Parent=Msa0178920-mRNA-1 |
| chr1_4 | exon | 66369443 | 66369557 | 66369443 | ID=Msa0178920-mRNA-1:exon:21661;Parent=Msa0178920-mRNA-1 |
| chr1_4 | exon | 66369658 | 66369859 | 66369658 | ID=Msa0178920-mRNA-1:exon:21662;Parent=Msa0178920-mRNA-1 |
| chr1_4 | exon | 66369901 | 66370038 | 66369901 | ID=Msa0178920-mRNA-1:exon:21663;Parent=Msa0178920-mRNA-1 |
| chr1_4 | five_prime_UTR | 66367521 | 66367628 | 66367521 | ID=Msa0178920-mRNA-1:five_prime_utr;Parent=Msa0178920-mRNA-1 |
| chr1_4 | CDS | 66367629 | 66367904 | 66367629 | ID=Msa0178920-mRNA-1:cds;Parent=Msa0178920-mRNA-1 |
| chr1_4 | CDS | 66368001 | 66368258 | 66368001 | ID=Msa0178920-mRNA-1:cds;Parent=Msa0178920-mRNA-1 |
| chr1_4 | CDS | 66368532 | 66368735 | 66368532 | ID=Msa0178920-mRNA-1:cds;Parent=Msa0178920-mRNA-1 |
| chr1_4 | CDS | 66369443 | 66369556 | 66369443 | ID=Msa0178920-mRNA-1:cds;Parent=Msa0178920-mRNA-1 |
| chr1_4 | three_prime_UTR | 66369557 | 66369557 | 66369557 | ID=Msa0178920-mRNA-1:three_prime_utr;Parent=Msa0178920-mRNA-1 |
| chr1_4 | three_prime_UTR | 66369658 | 66369859 | 66369658 | ID=Msa0178920-mRNA-1:three_prime_utr;Parent=Msa0178920-mRNA-1 |
| chr1_4 | three_prime_UTR | 66369901 | 66370038 | 66369901 | ID=Msa0178920-mRNA-1:three_prime_utr;Parent=Msa0178920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
