AlfalfaGEDB | Msa0669770

M. sativa cultivar zhongmu-4 / Msa0669770

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0406120	Msa0669770	0.810759	9.824566e-51	-8.615850e-47
Msa0436780	Msa0669770	0.820768	5.762053e-53	-8.615850e-47
Msa0657970	Msa0669770	0.800179	1.627366e-48	-8.615850e-47
Msa0669770	Msa0885280	0.808204	3.473813e-50	-8.615850e-47
Msa0669770	Msa1136090	0.807465	4.988631e-50	-8.615850e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 7 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCACTCACTGCATATA+TGG	0.373474	4_4:-11632611	None:intergenic
AGCAACTTTACTAAGCTCAT+AGG	0.559777	4_4:-11632202	None:intergenic
CTTTAGTATCGATTTCACGA+AGG	0.668239	4_4:+11632362	Msa0669770:CDS
GACAGACAATATAGGAAAAG+AGG	0.507170	4_4:-11632513	None:intergenic
GCCGATATGACAGACAATAT+AGG	0.489408	4_4:-11632521	None:intergenic
TCCTATATTGTCTGTCATAT+CGG	0.369008	4_4:+11632520	Msa0669770:three_prime_UTR
TTAAAACTATCATTATTAAT+TGG	0.248704	4_4:+11632559	Msa0669770:three_prime_UTR

Showing 1 to 7 of 7 entries

Previous1Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CAAAGCTTAAACTTTCTTAG+GGG	+	chr4_4:11632310-11632329	Msa0669770:intron	30.0%
	AAAGCTTAAACTTTCTTAGG+GGG	+	chr4_4:11632311-11632330	Msa0669770:intron	30.0%
	TCCTATATTGTCTGTCATAT+CGG	+	chr4_4:11632520-11632539	Msa0669770:three_prime_UTR	30.0%
	AGCAACTTTACTAAGCTCAT+AGG	-	chr4_4:11632205-11632224	None:intergenic	35.0%
	GACAGACAATATAGGAAAAG+AGG	-	chr4_4:11632516-11632535	None:intergenic	35.0%
	GCCGATATGACAGACAATAT+AGG	-	chr4_4:11632524-11632543	None:intergenic	40.0%
!	TTCAAAGCTTAAACTTTCTT+AGG	+	chr4_4:11632308-11632327	Msa0669770:intron	25.0%
!	TCAAAGCTTAAACTTTCTTA+GGG	+	chr4_4:11632309-11632328	Msa0669770:intron	25.0%
!	TGATTTTTGTTGCAAGAGCA+AGG	+	chr4_4:11632402-11632421	Msa0669770:CDS	35.0%
!!	TTAAAACTATCATTATTAAT+TGG	+	chr4_4:11632559-11632578	Msa0669770:three_prime_UTR	10.0%

Showing 1 to 10 of 17 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	11632186	11632622	11632186	ID=Msa0669770;Name=Msa0669770
chr4_4	mRNA	11632186	11632622	11632186	ID=Msa0669770-mRNA-1;Parent=Msa0669770;Name=Msa0669770-mRNA-1;_AED=0.36;_eAED=0.43;_QI=0\|0\|0.5\|1\|1\|0.5\|2\|148\|48
chr4_4	exon	11632186	11632218	11632186	ID=Msa0669770-mRNA-1:exon:3528;Parent=Msa0669770-mRNA-1
chr4_4	exon	11632361	11632622	11632361	ID=Msa0669770-mRNA-1:exon:3529;Parent=Msa0669770-mRNA-1
chr4_4	CDS	11632186	11632218	11632186	ID=Msa0669770-mRNA-1:cds;Parent=Msa0669770-mRNA-1
chr4_4	CDS	11632361	11632474	11632361	ID=Msa0669770-mRNA-1:cds;Parent=Msa0669770-mRNA-1
chr4_4	three_prime_UTR	11632475	11632622	11632475	ID=Msa0669770-mRNA-1:three_prime_utr;Parent=Msa0669770-mRNA-1

Gene Sequence	>Msa0669770 GTTGAGAAGGAAGCAGCCTATGAGCTTAGTAAAGCTTTAGTATCGATTTCACGAAGGAGTAGCTTGCTACATGCTGATTTTTGTTGCAAGAGCAAGGTTTGTCTTTTTCTTCATTGTCTTTTTGTGATTAATTTCAATCACCTTTAG
Protein sequence	>Msa0669770 VEKEAAYELSKALVSISRRSSLLHADFCCKSKVCLFLHCLFVINFNHL*