Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0406120 | RHN66915.1 | 93.617 | 188 | 12 | 0 | 4 | 191 | 144 | 331 | 1.70e-121 | 360 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0406120 | A0A396ISJ6 | 93.617 | 188 | 12 | 0 | 4 | 191 | 144 | 331 | 8.13e-122 | 360 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000190 | Msa0406120 | 0.802399 | 5.715499e-49 | -8.615850e-47 |
Msa0012700 | Msa0406120 | 0.811009 | 8.672719e-51 | -8.615850e-47 |
Msa0013750 | Msa0406120 | 0.830784 | 2.415856e-55 | -8.615850e-47 |
Msa0015400 | Msa0406120 | 0.833538 | 5.034670e-56 | -8.615850e-47 |
Msa0015750 | Msa0406120 | 0.807404 | 5.138566e-50 | -8.615850e-47 |
Msa0017510 | Msa0406120 | 0.816551 | 5.217738e-52 | -8.615850e-47 |
Msa0056530 | Msa0406120 | 0.802444 | 5.594321e-49 | -8.615850e-47 |
Msa0102070 | Msa0406120 | 0.847558 | 1.072110e-59 | -8.615850e-47 |
Msa0111510 | Msa0406120 | 0.809163 | 2.166967e-50 | -8.615850e-47 |
Msa0142220 | Msa0406120 | 0.822290 | 2.563732e-53 | -8.615850e-47 |
Msa0145750 | Msa0406120 | 0.867957 | 9.325230e-66 | -8.615850e-47 |
Msa0153910 | Msa0406120 | 0.830466 | 2.891359e-55 | -8.615850e-47 |
Msa0157290 | Msa0406120 | 0.816963 | 4.217510e-52 | -8.615850e-47 |
Msa0188460 | Msa0406120 | 0.804203 | 2.418113e-49 | -8.615850e-47 |
Msa0199240 | Msa0406120 | 0.803431 | 3.498097e-49 | -8.615850e-47 |
Msa0200000 | Msa0406120 | 0.817246 | 3.641948e-52 | -8.615850e-47 |
Msa0200260 | Msa0406120 | 0.812021 | 5.228776e-51 | -8.615850e-47 |
Msa0208090 | Msa0406120 | 0.800984 | 1.115328e-48 | -8.615850e-47 |
Msa0227480 | Msa0406120 | 0.833934 | 4.009087e-56 | -8.615850e-47 |
Msa0232850 | Msa0406120 | 0.822062 | 2.895402e-53 | -8.615850e-47 |
Msa0235140 | Msa0406120 | 0.850424 | 1.712990e-60 | -8.615850e-47 |
Msa0365500 | Msa0406120 | 0.832326 | 1.007739e-55 | -8.615850e-47 |
Msa0366580 | Msa0406120 | 0.865945 | 4.084815e-65 | -8.615850e-47 |
Msa0384800 | Msa0406120 | 0.866012 | 3.889782e-65 | -8.615850e-47 |
Msa0390070 | Msa0406120 | 0.809767 | 1.607985e-50 | -8.615850e-47 |
Msa0394970 | Msa0406120 | 0.811133 | 8.151933e-51 | -8.615850e-47 |
Msa0396600 | Msa0406120 | 0.822203 | 2.685792e-53 | -8.615850e-47 |
Msa0406120 | Msa0407750 | 0.806832 | 6.790483e-50 | -8.615850e-47 |
Msa0406120 | Msa0414410 | 0.824024 | 1.009516e-53 | -8.615850e-47 |
Msa0406120 | Msa0414420 | 0.861603 | 9.134970e-64 | -8.615850e-47 |
Msa0406120 | Msa0419980 | 0.800166 | 1.637178e-48 | -8.615850e-47 |
Msa0406120 | Msa0423020 | 0.808734 | 2.677882e-50 | -8.615850e-47 |
Msa0406120 | Msa0435230 | 0.827084 | 1.901492e-54 | -8.615850e-47 |
Msa0406120 | Msa0436780 | 0.857632 | 1.429846e-62 | -8.615850e-47 |
Msa0406120 | Msa0436800 | 0.825115 | 5.590233e-54 | -8.615850e-47 |
Msa0406120 | Msa0437990 | 0.834073 | 3.700711e-56 | -8.615850e-47 |
Msa0406120 | Msa0438620 | 0.828544 | 8.477139e-55 | -8.615850e-47 |
Msa0406120 | Msa0450000 | 0.825387 | 4.820530e-54 | -8.615850e-47 |
Msa0406120 | Msa0450570 | 0.805031 | 1.624420e-49 | -8.615850e-47 |
Msa0406120 | Msa0451730 | 0.834688 | 2.593408e-56 | -8.615850e-47 |
Msa0406120 | Msa0452620 | 0.827945 | 1.182091e-54 | -8.615850e-47 |
Msa0406120 | Msa0452900 | 0.875354 | 3.292510e-68 | -8.615850e-47 |
Msa0406120 | Msa0453120 | 0.865872 | 4.309393e-65 | -8.615850e-47 |
Msa0406120 | Msa0454370 | 0.811470 | 6.889417e-51 | -8.615850e-47 |
Msa0406120 | Msa0454910 | 0.830800 | 2.395032e-55 | -8.615850e-47 |
Msa0406120 | Msa0456200 | 0.821030 | 5.015374e-53 | -8.615850e-47 |
Msa0406120 | Msa0459160 | 0.800877 | 1.172497e-48 | -8.615850e-47 |
Msa0406120 | Msa0459170 | 0.804154 | 2.475464e-49 | -8.615850e-47 |
Msa0406120 | Msa0479340 | 0.800705 | 1.271699e-48 | -8.615850e-47 |
Msa0406120 | Msa0482620 | 0.804595 | 2.003184e-49 | -8.615850e-47 |
Msa0406120 | Msa0491590 | 0.856600 | 2.883861e-62 | -8.615850e-47 |
Msa0406120 | Msa0502270 | 0.808159 | 3.551416e-50 | -8.615850e-47 |
Msa0406120 | Msa0502760 | 0.816133 | 6.468911e-52 | -8.615850e-47 |
Msa0406120 | Msa0506270 | 0.825840 | 3.763981e-54 | -8.615850e-47 |
Msa0406120 | Msa0534540 | 0.804117 | 2.520102e-49 | -8.615850e-47 |
Msa0406120 | Msa0545200 | 0.821842 | 3.256705e-53 | -8.615850e-47 |
Msa0406120 | Msa0548060 | 0.836012 | 1.200742e-56 | -8.615850e-47 |
Msa0406120 | Msa0564890 | 0.857484 | 1.582363e-62 | -8.615850e-47 |
Msa0406120 | Msa0600700 | 0.827661 | 1.382901e-54 | -8.615850e-47 |
Msa0406120 | Msa0627410 | 0.816295 | 5.951744e-52 | -8.615850e-47 |
Msa0406120 | Msa0636170 | 0.824105 | 9.665036e-54 | -8.615850e-47 |
Msa0406120 | Msa0669770 | 0.810759 | 9.824566e-51 | -8.615850e-47 |
Msa0406120 | Msa0678930 | 0.861098 | 1.301940e-63 | -8.615850e-47 |
Msa0406120 | Msa0688270 | 0.800572 | 1.353594e-48 | -8.615850e-47 |
Msa0406120 | Msa0694370 | 0.805991 | 1.021441e-49 | -8.615850e-47 |
Msa0406120 | Msa0697060 | 0.802281 | 6.044179e-49 | -8.615850e-47 |
Msa0406120 | Msa0726140 | 0.905348 | 4.720695e-80 | -8.615850e-47 |
Msa0406120 | Msa0729800 | 0.828581 | 8.300880e-55 | -8.615850e-47 |
Msa0406120 | Msa0731940 | 0.804573 | 2.024574e-49 | -8.615850e-47 |
Msa0406120 | Msa0732310 | 0.806070 | 9.833937e-50 | -8.615850e-47 |
Msa0406120 | Msa0733290 | 0.848135 | 7.433058e-60 | -8.615850e-47 |
Msa0406120 | Msa0736000 | 0.812285 | 4.579667e-51 | -8.615850e-47 |
Msa0406120 | Msa0741570 | 0.802298 | 5.995104e-49 | -8.615850e-47 |
Msa0406120 | Msa0741990 | 0.822678 | 2.083000e-53 | -8.615850e-47 |
Msa0406120 | Msa0743810 | 0.863712 | 2.046707e-64 | -8.615850e-47 |
Msa0406120 | Msa0745060 | 0.893426 | 6.357334e-75 | -8.615850e-47 |
Msa0406120 | Msa0745610 | 0.807916 | 4.000769e-50 | -8.615850e-47 |
Msa0406120 | Msa0762360 | 0.807879 | 4.074094e-50 | -8.615850e-47 |
Msa0406120 | Msa0763260 | 0.816985 | 4.169499e-52 | -8.615850e-47 |
Msa0406120 | Msa0767720 | 0.821462 | 3.987256e-53 | -8.615850e-47 |
Msa0406120 | Msa0777790 | 0.801075 | 1.068342e-48 | -8.615850e-47 |
Msa0406120 | Msa0777850 | 0.812062 | 5.120629e-51 | -8.615850e-47 |
Msa0406120 | Msa0777870 | 0.837842 | 4.095156e-57 | -8.615850e-47 |
Msa0406120 | Msa0777930 | 0.804051 | 2.601022e-49 | -8.615850e-47 |
Msa0406120 | Msa0783160 | 0.832404 | 9.639496e-56 | -8.615850e-47 |
Msa0406120 | Msa0786500 | 0.819823 | 9.487827e-53 | -8.615850e-47 |
Msa0406120 | Msa0787600 | 0.840365 | 9.088134e-58 | -8.615850e-47 |
Msa0406120 | Msa0808010 | 0.830292 | 3.188140e-55 | -8.615850e-47 |
Msa0406120 | Msa0808020 | 0.821701 | 3.510831e-53 | -8.615850e-47 |
Msa0406120 | Msa0810220 | 0.805354 | 1.390120e-49 | -8.615850e-47 |
Msa0406120 | Msa0811080 | 0.815031 | 1.138269e-51 | -8.615850e-47 |
Msa0406120 | Msa0816150 | 0.808171 | 3.530735e-50 | -8.615850e-47 |
Msa0406120 | Msa0822870 | 0.820412 | 6.953013e-53 | -8.615850e-47 |
Msa0406120 | Msa0825860 | 0.901033 | 4.032948e-78 | -8.615850e-47 |
Msa0406120 | Msa0826750 | 0.808202 | 3.477183e-50 | -8.615850e-47 |
Msa0406120 | Msa0833290 | 0.840447 | 8.646967e-58 | -8.615850e-47 |
Msa0406120 | Msa0833300 | 0.852498 | 4.438745e-61 | -8.615850e-47 |
Msa0406120 | Msa0844500 | 0.822403 | 2.412921e-53 | -8.615850e-47 |
Msa0406120 | Msa0846330 | 0.865056 | 7.786746e-65 | -8.615850e-47 |
Msa0406120 | Msa0846350 | 0.870099 | 1.884684e-66 | -8.615850e-47 |
Msa0406120 | Msa0853610 | 0.816836 | 4.504360e-52 | -8.615850e-47 |
Msa0406120 | Msa0857680 | 0.819741 | 9.905610e-53 | -8.615850e-47 |
Msa0406120 | Msa0858980 | 0.806004 | 1.015247e-49 | -8.615850e-47 |
Msa0406120 | Msa0865320 | 0.888335 | 6.469047e-73 | -8.615850e-47 |
Msa0406120 | Msa0876550 | 0.815453 | 9.173214e-52 | -8.615850e-47 |
Msa0406120 | Msa0880140 | 0.811337 | 7.362059e-51 | -8.615850e-47 |
Msa0406120 | Msa0885280 | 0.862101 | 6.431241e-64 | -8.615850e-47 |
Msa0406120 | Msa0885290 | 0.881987 | 1.519155e-70 | -8.615850e-47 |
Msa0406120 | Msa0887020 | 0.823408 | 1.407566e-53 | -8.615850e-47 |
Msa0406120 | Msa0887990 | 0.821246 | 4.471946e-53 | -8.615850e-47 |
Msa0406120 | Msa0888370 | 0.827707 | 1.348148e-54 | -8.615850e-47 |
Msa0406120 | Msa0888420 | 0.840626 | 7.762099e-58 | -8.615850e-47 |
Msa0406120 | Msa0890320 | 0.853494 | 2.302345e-61 | -8.615850e-47 |
Msa0406120 | Msa0895270 | 0.804081 | 2.563386e-49 | -8.615850e-47 |
Msa0406120 | Msa0916680 | 0.805321 | 1.412622e-49 | -8.615850e-47 |
Msa0406120 | Msa0917810 | 0.808752 | 2.654156e-50 | -8.615850e-47 |
Msa0406120 | Msa0922720 | 0.823440 | 1.383659e-53 | -8.615850e-47 |
Msa0406120 | Msa0952720 | 0.826980 | 2.014022e-54 | -8.615850e-47 |
Msa0406120 | Msa0954910 | 0.812538 | 4.030639e-51 | -8.615850e-47 |
Msa0406120 | Msa0957680 | 0.809495 | 1.839622e-50 | -8.615850e-47 |
Msa0406120 | Msa0961090 | 0.801049 | 1.081343e-48 | -8.615850e-47 |
Msa0406120 | Msa0966760 | 0.834041 | 3.769497e-56 | -8.615850e-47 |
Msa0406120 | Msa0969260 | 0.825385 | 4.824867e-54 | -8.615850e-47 |
Msa0406120 | Msa0979410 | 0.812939 | 3.293643e-51 | -8.615850e-47 |
Msa0406120 | Msa0981370 | 0.892113 | 2.140097e-74 | -8.615850e-47 |
Msa0406120 | Msa0989060 | 0.848481 | 5.963007e-60 | -8.615850e-47 |
Msa0406120 | Msa1014540 | 0.802652 | 5.068883e-49 | -8.615850e-47 |
Msa0406120 | Msa1016280 | 0.876073 | 1.864909e-68 | -8.615850e-47 |
Msa0406120 | Msa1024240 | 0.873759 | 1.146162e-67 | -8.615850e-47 |
Msa0406120 | Msa1025360 | 0.866212 | 3.363478e-65 | -8.615850e-47 |
Msa0406120 | Msa1025370 | 0.878389 | 2.922256e-69 | -8.615850e-47 |
Msa0406120 | Msa1030060 | 0.801859 | 7.380413e-49 | -8.615850e-47 |
Msa0406120 | Msa1037200 | 0.806843 | 6.754204e-50 | -8.615850e-47 |
Msa0406120 | Msa1044830 | 0.874799 | 5.091036e-68 | -8.615850e-47 |
Msa0406120 | Msa1044840 | 0.870193 | 1.755140e-66 | -8.615850e-47 |
Msa0406120 | Msa1054790 | 0.814332 | 1.625889e-51 | -8.615850e-47 |
Msa0406120 | Msa1057920 | 0.808199 | 3.482367e-50 | -8.615850e-47 |
Msa0406120 | Msa1060540 | 0.807062 | 6.072312e-50 | -8.615850e-47 |
Msa0406120 | Msa1060840 | 0.817929 | 2.555036e-52 | -8.615850e-47 |
Msa0406120 | Msa1062810 | 0.802892 | 4.522685e-49 | -8.615850e-47 |
Msa0406120 | Msa1077460 | 0.810636 | 1.044409e-50 | -8.615850e-47 |
Msa0406120 | Msa1077870 | 0.826014 | 3.422270e-54 | -8.615850e-47 |
Msa0406120 | Msa1079180 | 0.827791 | 1.286897e-54 | -8.615850e-47 |
Msa0406120 | Msa1084240 | 0.811231 | 7.763808e-51 | -8.615850e-47 |
Msa0406120 | Msa1085390 | 0.802081 | 6.643883e-49 | -8.615850e-47 |
Msa0406120 | Msa1092990 | 0.854068 | 1.574207e-61 | -8.615850e-47 |
Msa0406120 | Msa1096580 | 0.826716 | 2.328528e-54 | -8.615850e-47 |
Msa0406120 | Msa1100980 | 0.874435 | 6.770412e-68 | -8.615850e-47 |
Msa0406120 | Msa1109440 | 0.875737 | 2.433198e-68 | -8.615850e-47 |
Msa0406120 | Msa1112300 | 0.819833 | 9.435767e-53 | -8.615850e-47 |
Msa0406120 | Msa1121200 | 0.870764 | 1.140746e-66 | -8.615850e-47 |
Msa0406120 | Msa1123420 | 0.825424 | 4.723738e-54 | -8.615850e-47 |
Msa0406120 | Msa1135740 | 0.866527 | 2.672319e-65 | -8.615850e-47 |
Msa0406120 | Msa1136090 | 0.853214 | 2.770660e-61 | -8.615850e-47 |
Msa0406120 | Msa1141920 | 0.804187 | 2.436637e-49 | -8.615850e-47 |
Msa0406120 | Msa1146110 | 0.848181 | 7.217165e-60 | -8.615850e-47 |
Msa0406120 | Msa1149360 | 0.830637 | 2.625509e-55 | -8.615850e-47 |
Msa0406120 | Msa1150370 | 0.828897 | 6.961242e-55 | -8.615850e-47 |
Msa0406120 | Msa1160670 | 0.828526 | 8.561149e-55 | -8.615850e-47 |
Msa0406120 | Msa1160690 | 0.807363 | 5.242682e-50 | -8.615850e-47 |
Msa0406120 | Msa1164120 | 0.828378 | 9.294526e-55 | -8.615850e-47 |
Msa0406120 | Msa1169000 | 0.806760 | 7.035508e-50 | -8.615850e-47 |
Msa0406120 | Msa1173920 | 0.853327 | 2.570974e-61 | -8.615850e-47 |
Msa0406120 | Msa1178720 | 0.830558 | 2.745295e-55 | -8.615850e-47 |
Msa0406120 | Msa1187940 | 0.888973 | 3.669530e-73 | -8.615850e-47 |
Msa0406120 | Msa1187950 | 0.844659 | 6.593613e-59 | -8.615850e-47 |
Msa0406120 | Msa1190400 | 0.805174 | 1.515980e-49 | -8.615850e-47 |
Msa0406120 | Msa1192640 | 0.877997 | 4.010238e-69 | -8.615850e-47 |
Msa0406120 | Msa1246880 | 0.816176 | 6.327918e-52 | -8.615850e-47 |
Msa0406120 | Msa1260100 | 0.835668 | 1.467252e-56 | -8.615850e-47 |
Msa0406120 | Msa1269670 | 0.885886 | 5.522326e-72 | -8.615850e-47 |
Msa0406120 | Msa1270230 | 0.858504 | 7.874021e-63 | -8.615850e-47 |
Msa0406120 | Msa1270240 | 0.865607 | 5.223897e-65 | -8.615850e-47 |
Msa0406120 | Msa1270270 | 0.862705 | 4.192870e-64 | -8.615850e-47 |
Msa0406120 | Msa1278110 | 0.804391 | 2.209293e-49 | -8.615850e-47 |
Msa0406120 | Msa1283330 | 0.864082 | 1.570695e-64 | -8.615850e-47 |
Msa0406120 | Msa1285930 | 0.887451 | 1.411323e-72 | -8.615850e-47 |
Msa0406120 | Msa1287800 | 0.864520 | 1.146478e-64 | -8.615850e-47 |
Msa0406120 | Msa1287810 | 0.877180 | 7.727907e-69 | -8.615850e-47 |
Msa0406120 | Msa1287820 | 0.818712 | 1.698719e-52 | -8.615850e-47 |
Msa0406120 | Msa1287830 | 0.861461 | 1.009326e-63 | -8.615850e-47 |
Msa0406120 | Msa1288560 | 0.805760 | 1.142628e-49 | -8.615850e-47 |
Msa0406120 | Msa1289420 | 0.803988 | 2.679696e-49 | -8.615850e-47 |
Msa0406120 | Msa1289430 | 0.836029 | 1.188450e-56 | -8.615850e-47 |
Msa0406120 | Msa1297210 | 0.860592 | 1.855559e-63 | -8.615850e-47 |
Msa0406120 | Msa1307890 | 0.835926 | 1.262200e-56 | -8.615850e-47 |
Msa0406120 | Msa1313980 | 0.824150 | 9.431041e-54 | -8.615850e-47 |
Msa0406120 | Msa1314280 | 0.863567 | 2.269698e-64 | -8.615850e-47 |
Msa0406120 | Msa1320300 | 0.836801 | 7.562759e-57 | -8.615850e-47 |
Msa0406120 | Msa1321560 | 0.814262 | 1.684853e-51 | -8.615850e-47 |
Msa0406120 | Msa1340590 | 0.845455 | 4.018678e-59 | -8.615850e-47 |
Msa0406120 | Msa1342200 | 0.847527 | 1.093004e-59 | -8.615850e-47 |
Msa0406120 | Msa1345660 | 0.802101 | 6.582363e-49 | -8.615850e-47 |
Msa0406120 | Msa1369430 | 0.802608 | 5.175151e-49 | -8.615850e-47 |
Msa0406120 | Msa1370210 | 0.829904 | 3.964328e-55 | -8.615850e-47 |
Msa0406120 | Msa1386330 | 0.820403 | 6.985342e-53 | -8.615850e-47 |
Msa0406120 | Msa1397580 | 0.835911 | 1.273861e-56 | -8.615850e-47 |
Msa0406120 | Msa1404000 | 0.877937 | 4.206755e-69 | -8.615850e-47 |
Msa0406120 | Msa1408780 | 0.808402 | 3.151725e-50 | -8.615850e-47 |
Msa0406120 | Msa1415310 | 0.869413 | 3.153741e-66 | -8.615850e-47 |
Msa0406120 | Msa1422180 | 0.839097 | 1.942757e-57 | -8.615850e-47 |
Msa0406120 | Msa1433120 | 0.877735 | 4.948826e-69 | -8.615850e-47 |
Msa0406120 | Msa1438250 | 0.875968 | 2.026729e-68 | -8.615850e-47 |
Msa0406120 | Msa1451570 | 0.810000 | 1.432962e-50 | -8.615850e-47 |
Msa0406120 | Msa1467020 | 0.801297 | 9.624071e-49 | -8.615850e-47 |
Msa0243100 | Msa0406120 | 0.816752 | 4.702324e-52 | -8.615850e-47 |
Msa0256440 | Msa0406120 | 0.821269 | 4.416314e-53 | -8.615850e-47 |
Msa0267000 | Msa0406120 | 0.863464 | 2.444277e-64 | -8.615850e-47 |
Msa0267010 | Msa0406120 | 0.864199 | 1.443423e-64 | -8.615850e-47 |
Msa0270520 | Msa0406120 | 0.800440 | 1.439864e-48 | -8.615850e-47 |
Msa0294030 | Msa0406120 | 0.800462 | 1.425254e-48 | -8.615850e-47 |
Msa0300570 | Msa0406120 | 0.821396 | 4.129276e-53 | -8.615850e-47 |
Msa0313760 | Msa0406120 | 0.814727 | 1.329638e-51 | -8.615850e-47 |
Msa0326200 | Msa0406120 | 0.824980 | 6.014471e-54 | -8.615850e-47 |
Msa0337900 | Msa0406120 | 0.815985 | 6.982972e-52 | -8.615850e-47 |
Msa0342240 | Msa0406120 | 0.851661 | 7.674635e-61 | -8.615850e-47 |
Msa0353190 | Msa0406120 | 0.818090 | 2.349966e-52 | -8.615850e-47 |
Msa0357680 | Msa0406120 | 0.810756 | 9.839088e-51 | -8.615850e-47 |
Msa0360510 | Msa0406120 | 0.839585 | 1.451272e-57 | -8.615850e-47 |
Msa0363300 | Msa0406120 | 0.841242 | 5.349965e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0406120 | MtrunA17_Chr3g0097011 | 93.617 | 188 | 12 | 0 | 4 | 191 | 144 | 331 | 1.57e-125 | 360 |
Msa0406120 | MtrunA17_Chr3g0108171 | 72.821 | 195 | 46 | 2 | 4 | 191 | 1693 | 1887 | 6.69e-83 | 268 |
Msa0406120 | MtrunA17_Chr3g0108171 | 41.463 | 123 | 54 | 4 | 4 | 115 | 1511 | 1626 | 4.19e-13 | 67.8 |
Msa0406120 | MtrunA17_Chr3g0087641 | 66.138 | 189 | 54 | 2 | 4 | 191 | 144 | 323 | 1.93e-77 | 236 |
Msa0406120 | MtrunA17_Chr3g0107261 | 63.366 | 202 | 60 | 3 | 4 | 191 | 118 | 319 | 3.52e-77 | 237 |
Msa0406120 | MtrunA17_Chr3g0091861 | 55.417 | 240 | 54 | 2 | 5 | 191 | 1568 | 1807 | 3.46e-71 | 235 |
Msa0406120 | MtrunA17_Chr3g0108091 | 72.152 | 158 | 38 | 2 | 45 | 196 | 310 | 467 | 5.90e-69 | 219 |
Msa0406120 | MtrunA17_Chr3g0091851 | 66.492 | 191 | 59 | 4 | 4 | 191 | 1061 | 1249 | 1.90e-67 | 224 |
Msa0406120 | MtrunA17_Chr3g0108071 | 72.152 | 158 | 38 | 2 | 45 | 196 | 773 | 930 | 5.00e-66 | 219 |
Msa0406120 | MtrunA17_Chr3g0107931 | 63.492 | 189 | 46 | 4 | 4 | 191 | 1641 | 1807 | 6.46e-64 | 214 |
Msa0406120 | MtrunA17_Chr3g0105471 | 63.580 | 162 | 54 | 1 | 35 | 191 | 12 | 173 | 7.50e-61 | 190 |
Msa0406120 | MtrunA17_Chr3g0105591 | 57.789 | 199 | 64 | 5 | 4 | 195 | 175 | 360 | 3.68e-60 | 194 |
Msa0406120 | MtrunA17_Chr3g0105521 | 59.585 | 193 | 60 | 3 | 5 | 191 | 1357 | 1537 | 3.13e-59 | 201 |
Msa0406120 | MtrunA17_Chr3g0108821 | 58.500 | 200 | 64 | 4 | 4 | 191 | 1530 | 1722 | 5.54e-59 | 200 |
Msa0406120 | MtrunA17_Chr3g0108811 | 57.500 | 200 | 66 | 4 | 4 | 191 | 1674 | 1866 | 2.59e-58 | 198 |
Msa0406120 | MtrunA17_Chr3g0105551 | 57.071 | 198 | 67 | 3 | 4 | 195 | 1604 | 1789 | 6.79e-58 | 197 |
Msa0406120 | MtrunA17_Chr3g0108761 | 85.437 | 103 | 15 | 0 | 89 | 191 | 12 | 114 | 1.53e-57 | 180 |
Msa0406120 | MtrunA17_Chr2g0304131 | 53.723 | 188 | 74 | 2 | 17 | 191 | 48 | 235 | 1.93e-55 | 179 |
Msa0406120 | MtrunA17_Chr3g0108151 | 59.474 | 190 | 59 | 5 | 4 | 191 | 1297 | 1470 | 2.71e-55 | 189 |
Msa0406120 | MtrunA17_Chr3g0107641 | 71.818 | 110 | 31 | 0 | 82 | 191 | 3 | 112 | 2.35e-47 | 154 |
Msa0406120 | MtrunA17_Chr7g0229711 | 64.516 | 93 | 24 | 2 | 99 | 191 | 2 | 85 | 4.02e-32 | 114 |
Msa0406120 | MtrunA17_Chr3g0107171 | 74.194 | 62 | 16 | 0 | 130 | 191 | 242 | 303 | 2.22e-24 | 99.0 |
Msa0406120 | MtrunA17_Chr3g0096771 | 41.317 | 167 | 62 | 4 | 38 | 191 | 66 | 209 | 1.47e-23 | 95.5 |
Msa0406120 | MtrunA17_Chr7g0223911 | 75.862 | 58 | 14 | 0 | 134 | 191 | 30 | 87 | 2.05e-23 | 92.0 |
Msa0406120 | MtrunA17_Chr3g0108201 | 46.067 | 89 | 37 | 2 | 10 | 87 | 1 | 89 | 1.43e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 29 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATCCTTCAATTCCTTTAA+AGG | 0.136199 | 3_2:-42198212 | Msa0406120:CDS |
CTCAATGAAGTGTCCTTTAA+AGG | 0.175932 | 3_2:+42198199 | None:intergenic |
TGAAAGTGCGCTTTGTTTAC+TGG | 0.251734 | 3_2:-42198014 | Msa0406120:CDS |
GAGTAGAAGCTACGGCTATT+TGG | 0.307788 | 3_2:+42198732 | None:intergenic |
AATACAATATGGTATTGATT+TGG | 0.375134 | 3_2:+42198467 | None:intergenic |
TCAACATCTTGAGTGGCTAT+TGG | 0.388913 | 3_2:+42198710 | None:intergenic |
TACTGAGATGCAATACAATA+TGG | 0.422165 | 3_2:+42198456 | None:intergenic |
ATACCTCCAGTAGGCTTTGA+AGG | 0.423715 | 3_2:+42198432 | None:intergenic |
TAGCTCAGCTAGGCAATTGT+AGG | 0.442686 | 3_2:+42198156 | None:intergenic |
TTCTTCTTTGTTTGTCAAGA+GGG | 0.449409 | 3_2:-42198308 | Msa0406120:CDS |
CATAGTGTGTTGGATGTGTT+AGG | 0.454033 | 3_2:-42198115 | Msa0406120:CDS |
CAGTATCCTTCAAAGCCTAC+TGG | 0.463825 | 3_2:-42198438 | Msa0406120:CDS |
TCCAACCATTCCTTATCAAA+AGG | 0.474355 | 3_2:+42198043 | None:intergenic |
GTGTCCTTTAAAGGAATTGA+AGG | 0.476534 | 3_2:+42198208 | None:intergenic |
CCAACACACTATGAGTTTGA+AGG | 0.495152 | 3_2:+42198125 | None:intergenic |
AAGATGTTGATGTTGAAATC+TGG | 0.495281 | 3_2:-42198697 | Msa0406120:CDS |
TTCATTGAGTAACAGATACA+AGG | 0.528560 | 3_2:-42198185 | Msa0406120:CDS |
GAAAGTAAGCTCAAATATTG+AGG | 0.535836 | 3_2:-42198523 | Msa0406120:CDS |
AGAAAGACTGATGATGATCA+AGG | 0.563867 | 3_2:-42198665 | Msa0406120:intron |
CCTTCAAACTCATAGTGTGT+TGG | 0.566941 | 3_2:-42198125 | Msa0406120:CDS |
GTTCTTCTTTGTTTGTCAAG+AGG | 0.570622 | 3_2:-42198309 | Msa0406120:CDS |
GGCTATTGGAGTAGAAGCTA+CGG | 0.571106 | 3_2:+42198724 | None:intergenic |
TTTGATAAGGAATGGTTGGA+TGG | 0.580527 | 3_2:-42198040 | Msa0406120:CDS |
GGAATTTCAATAGCTCAGCT+AGG | 0.596316 | 3_2:+42198146 | None:intergenic |
AGAAATAAAATACCTCCAGT+AGG | 0.601884 | 3_2:+42198423 | None:intergenic |
TTCAACATCAACATCTTGAG+TGG | 0.608521 | 3_2:+42198703 | None:intergenic |
TGTTGATGTTGAAATCTGGC+AGG | 0.610558 | 3_2:-42198693 | Msa0406120:CDS |
TCATTGAGTAACAGATACAA+GGG | 0.655882 | 3_2:-42198184 | Msa0406120:CDS |
TATCCTTCAAAGCCTACTGG+AGG | 0.675742 | 3_2:-42198435 | Msa0406120:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTAAATTTTAGGAAGA+CGG | - | chr3_2:42197967-42197986 | Msa0406120:CDS | 15.0% |
!!! | ACTAATATTTCATCATTTTT+AGG | + | chr3_2:42198239-42198258 | None:intergenic | 15.0% |
!!! | TATTTTAAATTTTAGGAAGA+CGG | - | chr3_2:42197967-42197986 | Msa0406120:CDS | 15.0% |
!!! | ACTAATATTTCATCATTTTT+AGG | + | chr3_2:42198239-42198258 | None:intergenic | 15.0% |
!!! | AATACAATATGGTATTGATT+TGG | + | chr3_2:42198264-42198283 | None:intergenic | 20.0% |
!!! | TTAAATCTTCTTTTTGAGAA+AGG | + | chr3_2:42198399-42198418 | None:intergenic | 20.0% |
!!! | AATACAATATGGTATTGATT+TGG | + | chr3_2:42198264-42198283 | None:intergenic | 20.0% |
!!! | TTAAATCTTCTTTTTGAGAA+AGG | + | chr3_2:42198399-42198418 | None:intergenic | 20.0% |
! | TGATCAAGGTAAAAAATCTT+TGG | - | chr3_2:42198077-42198096 | Msa0406120:CDS | 25.0% |
! | AAGGTAAAAAATCTTTGGAT+CGG | - | chr3_2:42198082-42198101 | Msa0406120:CDS | 25.0% |
!! | TAATTTTCTTGTGCTCAAAT+AGG | - | chr3_2:42198342-42198361 | Msa0406120:intron | 25.0% |
! | TGATCAAGGTAAAAAATCTT+TGG | - | chr3_2:42198077-42198096 | Msa0406120:CDS | 25.0% |
! | AAGGTAAAAAATCTTTGGAT+CGG | - | chr3_2:42198082-42198101 | Msa0406120:CDS | 25.0% |
!! | TAATTTTCTTGTGCTCAAAT+AGG | - | chr3_2:42198342-42198361 | Msa0406120:intron | 25.0% |
AAGATGTTGATGTTGAAATC+TGG | - | chr3_2:42198031-42198050 | Msa0406120:CDS | 30.0% | |
ATTTAGAGAAACTGGACAAA+GGG | + | chr3_2:42198171-42198190 | None:intergenic | 30.0% | |
TCATCATCATTTAGAGAAAC+TGG | + | chr3_2:42198179-42198198 | None:intergenic | 30.0% | |
GAAAGTAAGCTCAAATATTG+AGG | - | chr3_2:42198205-42198224 | Msa0406120:CDS | 30.0% | |
TACTGAGATGCAATACAATA+TGG | + | chr3_2:42198275-42198294 | None:intergenic | 30.0% | |
AGAAATAAAATACCTCCAGT+AGG | + | chr3_2:42198308-42198327 | None:intergenic | 30.0% | |
TTATTCTTGCCTATACTTTC+AGG | - | chr3_2:42198370-42198389 | Msa0406120:intron | 30.0% | |
TATTCTTGCCTATACTTTCA+GGG | - | chr3_2:42198371-42198390 | Msa0406120:intron | 30.0% | |
! | TTCTTCTTTGTTTGTCAAGA+GGG | - | chr3_2:42198420-42198439 | Msa0406120:intron | 30.0% |
TTCATTGAGTAACAGATACA+AGG | - | chr3_2:42198543-42198562 | Msa0406120:CDS | 30.0% | |
TCATTGAGTAACAGATACAA+GGG | - | chr3_2:42198544-42198563 | Msa0406120:CDS | 30.0% | |
! | GATTTCCTTTTGATAAGGAA+TGG | - | chr3_2:42198680-42198699 | Msa0406120:CDS | 30.0% |
AGATGCATTGCAAAAATTGT+TGG | - | chr3_2:42198755-42198774 | Msa0406120:intron | 30.0% | |
AAGATGTTGATGTTGAAATC+TGG | - | chr3_2:42198031-42198050 | Msa0406120:CDS | 30.0% | |
ATTTAGAGAAACTGGACAAA+GGG | + | chr3_2:42198171-42198190 | None:intergenic | 30.0% | |
TCATCATCATTTAGAGAAAC+TGG | + | chr3_2:42198179-42198198 | None:intergenic | 30.0% | |
GAAAGTAAGCTCAAATATTG+AGG | - | chr3_2:42198205-42198224 | Msa0406120:CDS | 30.0% | |
TACTGAGATGCAATACAATA+TGG | + | chr3_2:42198275-42198294 | None:intergenic | 30.0% | |
AGAAATAAAATACCTCCAGT+AGG | + | chr3_2:42198308-42198327 | None:intergenic | 30.0% | |
TTATTCTTGCCTATACTTTC+AGG | - | chr3_2:42198370-42198389 | Msa0406120:intron | 30.0% | |
TATTCTTGCCTATACTTTCA+GGG | - | chr3_2:42198371-42198390 | Msa0406120:intron | 30.0% | |
! | TTCTTCTTTGTTTGTCAAGA+GGG | - | chr3_2:42198420-42198439 | Msa0406120:intron | 30.0% |
TTCATTGAGTAACAGATACA+AGG | - | chr3_2:42198543-42198562 | Msa0406120:CDS | 30.0% | |
TCATTGAGTAACAGATACAA+GGG | - | chr3_2:42198544-42198563 | Msa0406120:CDS | 30.0% | |
! | GATTTCCTTTTGATAAGGAA+TGG | - | chr3_2:42198680-42198699 | Msa0406120:CDS | 30.0% |
AGATGCATTGCAAAAATTGT+TGG | - | chr3_2:42198755-42198774 | Msa0406120:intron | 30.0% | |
TTCAACATCAACATCTTGAG+TGG | + | chr3_2:42198028-42198047 | None:intergenic | 35.0% | |
! | AGAAAGACTGATGATGATCA+AGG | - | chr3_2:42198063-42198082 | Msa0406120:CDS | 35.0% |
TCAAAATGAAAAGAGCGATG+AGG | + | chr3_2:42198126-42198145 | None:intergenic | 35.0% | |
CATTTAGAGAAACTGGACAA+AGG | + | chr3_2:42198172-42198191 | None:intergenic | 35.0% | |
! | GTTCTTCTTTGTTTGTCAAG+AGG | - | chr3_2:42198419-42198438 | Msa0406120:intron | 35.0% |
GCATCCTTCAATTCCTTTAA+AGG | - | chr3_2:42198516-42198535 | Msa0406120:CDS | 35.0% | |
! | GTGTCCTTTAAAGGAATTGA+AGG | + | chr3_2:42198523-42198542 | None:intergenic | 35.0% |
! | CTCAATGAAGTGTCCTTTAA+AGG | + | chr3_2:42198532-42198551 | None:intergenic | 35.0% |
! | GCACAGATTTCCTTTTGATA+AGG | - | chr3_2:42198675-42198694 | Msa0406120:CDS | 35.0% |
! | TCCTTTTGATAAGGAATGGT+TGG | - | chr3_2:42198684-42198703 | Msa0406120:CDS | 35.0% |
TCCAACCATTCCTTATCAAA+AGG | + | chr3_2:42198688-42198707 | None:intergenic | 35.0% | |
TTTGATAAGGAATGGTTGGA+TGG | - | chr3_2:42198688-42198707 | Msa0406120:CDS | 35.0% | |
TTCAACATCAACATCTTGAG+TGG | + | chr3_2:42198028-42198047 | None:intergenic | 35.0% | |
! | AGAAAGACTGATGATGATCA+AGG | - | chr3_2:42198063-42198082 | Msa0406120:CDS | 35.0% |
TCAAAATGAAAAGAGCGATG+AGG | + | chr3_2:42198126-42198145 | None:intergenic | 35.0% | |
CATTTAGAGAAACTGGACAA+AGG | + | chr3_2:42198172-42198191 | None:intergenic | 35.0% | |
! | GTTCTTCTTTGTTTGTCAAG+AGG | - | chr3_2:42198419-42198438 | Msa0406120:intron | 35.0% |
GCATCCTTCAATTCCTTTAA+AGG | - | chr3_2:42198516-42198535 | Msa0406120:CDS | 35.0% | |
! | GTGTCCTTTAAAGGAATTGA+AGG | + | chr3_2:42198523-42198542 | None:intergenic | 35.0% |
! | CTCAATGAAGTGTCCTTTAA+AGG | + | chr3_2:42198532-42198551 | None:intergenic | 35.0% |
! | GCACAGATTTCCTTTTGATA+AGG | - | chr3_2:42198675-42198694 | Msa0406120:CDS | 35.0% |
! | TCCTTTTGATAAGGAATGGT+TGG | - | chr3_2:42198684-42198703 | Msa0406120:CDS | 35.0% |
TCCAACCATTCCTTATCAAA+AGG | + | chr3_2:42198688-42198707 | None:intergenic | 35.0% | |
TTTGATAAGGAATGGTTGGA+TGG | - | chr3_2:42198688-42198707 | Msa0406120:CDS | 35.0% | |
TCAACATCTTGAGTGGCTAT+TGG | + | chr3_2:42198021-42198040 | None:intergenic | 40.0% | |
TGTTGATGTTGAAATCTGGC+AGG | - | chr3_2:42198035-42198054 | Msa0406120:CDS | 40.0% | |
! | GAAAGGTTCCCTGAAAGTAT+AGG | + | chr3_2:42198382-42198401 | None:intergenic | 40.0% |
GGAATTTCAATAGCTCAGCT+AGG | + | chr3_2:42198585-42198604 | None:intergenic | 40.0% | |
CCAACACACTATGAGTTTGA+AGG | + | chr3_2:42198606-42198625 | None:intergenic | 40.0% | |
CCTTCAAACTCATAGTGTGT+TGG | - | chr3_2:42198603-42198622 | Msa0406120:intron | 40.0% | |
CATAGTGTGTTGGATGTGTT+AGG | - | chr3_2:42198613-42198632 | Msa0406120:intron | 40.0% | |
!! | TGAAAGTGCGCTTTGTTTAC+TGG | - | chr3_2:42198714-42198733 | Msa0406120:CDS | 40.0% |
TCAACATCTTGAGTGGCTAT+TGG | + | chr3_2:42198021-42198040 | None:intergenic | 40.0% | |
TGTTGATGTTGAAATCTGGC+AGG | - | chr3_2:42198035-42198054 | Msa0406120:CDS | 40.0% | |
! | GAAAGGTTCCCTGAAAGTAT+AGG | + | chr3_2:42198382-42198401 | None:intergenic | 40.0% |
GGAATTTCAATAGCTCAGCT+AGG | + | chr3_2:42198585-42198604 | None:intergenic | 40.0% | |
CCAACACACTATGAGTTTGA+AGG | + | chr3_2:42198606-42198625 | None:intergenic | 40.0% | |
CCTTCAAACTCATAGTGTGT+TGG | - | chr3_2:42198603-42198622 | Msa0406120:intron | 40.0% | |
CATAGTGTGTTGGATGTGTT+AGG | - | chr3_2:42198613-42198632 | Msa0406120:intron | 40.0% | |
!! | TGAAAGTGCGCTTTGTTTAC+TGG | - | chr3_2:42198714-42198733 | Msa0406120:CDS | 40.0% |
GAGTAGAAGCTACGGCTATT+TGG | + | chr3_2:42197999-42198018 | None:intergenic | 45.0% | |
GGCTATTGGAGTAGAAGCTA+CGG | + | chr3_2:42198007-42198026 | None:intergenic | 45.0% | |
CAGTATCCTTCAAAGCCTAC+TGG | - | chr3_2:42198290-42198309 | Msa0406120:CDS | 45.0% | |
TATCCTTCAAAGCCTACTGG+AGG | - | chr3_2:42198293-42198312 | Msa0406120:CDS | 45.0% | |
! | ATACCTCCAGTAGGCTTTGA+AGG | + | chr3_2:42198299-42198318 | None:intergenic | 45.0% |
TAGCTCAGCTAGGCAATTGT+AGG | + | chr3_2:42198575-42198594 | None:intergenic | 45.0% | |
GAGTAGAAGCTACGGCTATT+TGG | + | chr3_2:42197999-42198018 | None:intergenic | 45.0% | |
GGCTATTGGAGTAGAAGCTA+CGG | + | chr3_2:42198007-42198026 | None:intergenic | 45.0% | |
CAGTATCCTTCAAAGCCTAC+TGG | - | chr3_2:42198290-42198309 | Msa0406120:CDS | 45.0% | |
TATCCTTCAAAGCCTACTGG+AGG | - | chr3_2:42198293-42198312 | Msa0406120:CDS | 45.0% | |
! | ATACCTCCAGTAGGCTTTGA+AGG | + | chr3_2:42198299-42198318 | None:intergenic | 45.0% |
TAGCTCAGCTAGGCAATTGT+AGG | + | chr3_2:42198575-42198594 | None:intergenic | 45.0% | |
!!! | TAAAATTTAAAATAAACAAA+TGG | + | chr3_2:42197961-42197980 | None:intergenic | 5.0% |
!!! | ATTTGTTTATTTTAAATTTT+AGG | - | chr3_2:42197960-42197979 | Msa0406120:CDS | 5.0% |
!!! | TAAAATTTAAAATAAACAAA+TGG | + | chr3_2:42197961-42197980 | None:intergenic | 5.0% |
!!! | ATTTGTTTATTTTAAATTTT+AGG | - | chr3_2:42197960-42197979 | Msa0406120:CDS | 5.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 42197955 | 42198795 | 42197955 | ID=Msa0406120;Name=Msa0406120 |
chr3_2 | mRNA | 42197955 | 42198795 | 42197955 | ID=Msa0406120-mRNA-1;Parent=Msa0406120;Name=Msa0406120-mRNA-1;_AED=0.34;_eAED=0.36;_QI=0|0|0|1|0.66|0.75|4|0|216 |
chr3_2 | exon | 42198787 | 42198795 | 42198787 | ID=Msa0406120-mRNA-1:exon:8143;Parent=Msa0406120-mRNA-1 |
chr3_2 | exon | 42198666 | 42198768 | 42198666 | ID=Msa0406120-mRNA-1:exon:8142;Parent=Msa0406120-mRNA-1 |
chr3_2 | exon | 42198436 | 42198570 | 42198436 | ID=Msa0406120-mRNA-1:exon:8141;Parent=Msa0406120-mRNA-1 |
chr3_2 | exon | 42197955 | 42198358 | 42197955 | ID=Msa0406120-mRNA-1:exon:8140;Parent=Msa0406120-mRNA-1 |
chr3_2 | CDS | 42198787 | 42198795 | 42198787 | ID=Msa0406120-mRNA-1:cds;Parent=Msa0406120-mRNA-1 |
chr3_2 | CDS | 42198666 | 42198768 | 42198666 | ID=Msa0406120-mRNA-1:cds;Parent=Msa0406120-mRNA-1 |
chr3_2 | CDS | 42198436 | 42198570 | 42198436 | ID=Msa0406120-mRNA-1:cds;Parent=Msa0406120-mRNA-1 |
chr3_2 | CDS | 42197955 | 42198358 | 42197955 | ID=Msa0406120-mRNA-1:cds;Parent=Msa0406120-mRNA-1 |
Gene Sequence |
Protein sequence |