AlfalfaGEDB | Msa0436780

M. sativa cultivar zhongmu-4 / Msa0436780

KEGG: K11294
GO: -
PFAM: PF13673.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436780	AES70281.2	52.866	314	59	5	197	426	19	327	8.25e-88	282
Msa0436780	AES70281.2	73.973	219	33	3	1	195	1	219	3.56e-97	306

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436780	sp\|Q6Z1C0\|NUCL1_ORYSJ	50.000	64	31	1	353	415	292	355	1.66e-12	72.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436780	G7J1Z7	52.866	314	59	5	197	426	19	327	3.94e-88	282
Msa0436780	G7J1Z7	73.973	219	33	3	1	195	1	219	1.70e-97	306

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0436780	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013750	Msa0436780	0.846669	1.877951e-59	-8.615850e-47
Msa0015750	Msa0436780	0.814235	1.708220e-51	-8.615850e-47
Msa0016570	Msa0436780	0.811798	5.845770e-51	-8.615850e-47
Msa0017510	Msa0436780	0.805104	1.568339e-49	-8.615850e-47
Msa0018650	Msa0436780	0.812653	3.804117e-51	-8.615850e-47
Msa0056530	Msa0436780	0.814395	1.575076e-51	-8.615850e-47
Msa0102070	Msa0436780	0.851535	8.330433e-61	-8.615850e-47
Msa0111510	Msa0436780	0.800239	1.582273e-48	-8.615850e-47
Msa0139060	Msa0436780	0.806915	6.521644e-50	-8.615850e-47
Msa0142220	Msa0436780	0.875592	2.728865e-68	-8.615850e-47

Showing 1 to 10 of 229 entries

Previous1 2 3 4 5…23Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436780	MtrunA17_Chr3g0098461	79.874	159	25	1	1	152	1	159	4.65e-85	257
Msa0436780	MtrunA17_Chr3g0098461	68.293	123	38	1	197	319	19	140	7.21e-51	169
Msa0436780	MtrunA17_Chr3g0098471	64.286	126	15	1	320	415	48	173	7.24e-39	138
Msa0436780	MtrunA17_Chr0c05g0492161	56.098	123	46	2	1	115	1	123	6.95e-38	134
Msa0436780	MtrunA17_Chr0c05g0492161	53.247	77	36	0	197	273	19	95	7.70e-20	85.1
Msa0436780	MtrunA17_Chr4g0038111	66.667	63	21	0	353	415	321	383	1.47e-20	94.4
Msa0436780	MtrunA17_Chr1g0163591	48.387	62	31	1	355	415	276	337	3.20e-13	71.6
Msa0436780	MtrunA17_Chr3g0090311	37.864	103	60	4	217	316	42	143	3.92e-11	62.0

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436780	AT3G18610.1	47.692	65	33	1	351	415	365	428	9.14e-13	70.9
Msa0436780	AT3G18610.3	47.692	65	33	1	351	415	335	398	9.57e-13	70.5
Msa0436780	AT3G18610.2	47.692	65	33	1	351	415	305	368	1.01e-12	70.5
Msa0436780	AT1G48920.1	42.424	66	36	2	351	415	278	342	4.70e-11	65.1

Showing 1 to 4 of 4 entries

Previous1Next

Find 108 sgRNAs with CRISPR-Local

Find 529 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCTACCCTAGTCGT+CGG	0.600371	3_2:-90543097	None:intergenic
AAACTTTCAAGATCCACGTC+AGG	0.572396	3_2:-90539565	None:intergenic
AAACTTTGAGTATCCACGTC+AGG	0.555864	3_2:-90535215	None:intergenic
AAAGAAGCAAAAGGTAGACG+AGG	0.690556	3_2:+90537601	Msa0436780:CDS
AAAGATAGGGCCAACGAAGA+GGG	0.584375	3_2:-90535351	None:intergenic
AAAGATAGGGTTAACGAAGA+TGG	0.472513	3_2:-90539701	None:intergenic
AAAGATGGGGTATGAGAAGG+AGG	0.631960	3_2:+90540061	Msa0436780:CDS
AAAGATGGGTTATGAGGAGG+TGG	0.568025	3_2:+90535666	Msa0436780:CDS
AAAGCGCTGAAAAGGACTTG+AGG	0.634334	3_2:+90539755	Msa0436780:CDS
AACCCTATCTTTCGGAGAGA+AGG	0.502877	3_2:+90539712	Msa0436780:CDS

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAATCTTATATAGGTCAAC+AGG	-	chr3_2:90535179-90535198	None:intergenic	30.0%
TGTTGACCTATATAAGATTC+TGG	+	chr3_2:90535178-90535197	Msa0436780:CDS	30.0%
CATTCACCAGAATCTTATAT+AGG	-	chr3_2:90535187-90535206	None:intergenic	30.0%
ATTACTCTTCTTCGAAAAGA+TGG	+	chr3_2:90535651-90535670	Msa0436780:CDS	30.0%
TTACTCTTCTTCGAAAAGAT+GGG	+	chr3_2:90535652-90535671	Msa0436780:CDS	30.0%
AAATAAACAGCCAAAAAAGG+GGG	-	chr3_2:90535824-90535843	None:intergenic	30.0%
TGAATAATGATGTGAGTGAA+AGG	+	chr3_2:90535948-90535967	Msa0436780:intron	30.0%
AGTTGTGCTTATTACATCTT+AGG	+	chr3_2:90536013-90536032	Msa0436780:intron	30.0%
GTTGTGCTTATTACATCTTA+GGG	+	chr3_2:90536014-90536033	Msa0436780:intron	30.0%
TCAAATCATACAACCATTAG+AGG	-	chr3_2:90536399-90536418	None:intergenic	30.0%

Showing 1 to 10 of 529 entries

Previous1 2 3 4 5…53Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	90535140	90543150	90535140	ID=Msa0436780;Name=Msa0436780
chr3_2	mRNA	90535140	90543150	90535140	ID=Msa0436780-mRNA-1;Parent=Msa0436780;Name=Msa0436780-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|0.9\|0.44\|0.4\|10\|0\|438
chr3_2	exon	90535140	90535245	90535140	ID=Msa0436780-mRNA-1:exon:26896;Parent=Msa0436780-mRNA-1
chr3_2	exon	90535267	90535430	90535267	ID=Msa0436780-mRNA-1:exon:26897;Parent=Msa0436780-mRNA-1
chr3_2	exon	90535601	90535784	90535601	ID=Msa0436780-mRNA-1:exon:26898;Parent=Msa0436780-mRNA-1
chr3_2	exon	90537561	90537694	90537561	ID=Msa0436780-mRNA-1:exon:26899;Parent=Msa0436780-mRNA-1
chr3_2	exon	90539544	90539783	90539544	ID=Msa0436780-mRNA-1:exon:26900;Parent=Msa0436780-mRNA-1
chr3_2	exon	90539996	90540124	90539996	ID=Msa0436780-mRNA-1:exon:26901;Parent=Msa0436780-mRNA-1
chr3_2	exon	90541600	90541713	90541600	ID=Msa0436780-mRNA-1:exon:26902;Parent=Msa0436780-mRNA-1
chr3_2	exon	90542188	90542276	90542188	ID=Msa0436780-mRNA-1:exon:26903;Parent=Msa0436780-mRNA-1
chr3_2	exon	90542353	90542437	90542353	ID=Msa0436780-mRNA-1:exon:26904;Parent=Msa0436780-mRNA-1
chr3_2	exon	90543079	90543150	90543079	ID=Msa0436780-mRNA-1:exon:26905;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90535140	90535245	90535140	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90535267	90535430	90535267	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90535601	90535784	90535601	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90537561	90537694	90537561	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90539544	90539783	90539544	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90539996	90540124	90539996	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90541600	90541713	90541600	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90542188	90542276	90542188	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90542353	90542437	90542353	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1
chr3_2	CDS	90543079	90543150	90543079	ID=Msa0436780-mRNA-1:cds;Parent=Msa0436780-mRNA-1

Gene Sequence

>Msa0436780

ATGGTGTCCCCGGGTGTGGTCGTAAGAGACGCAACACCTGTTGACCTATATAAGATTCTGGTGAATGATGTCTTTCCTGACGTGGATACTCAAAGTTTGGTGAATGCAGATGATCTCCTAGGCATTATCCTCGGTTACCTTGTCTTTGATGTTGGTGAACTGAAGCGTACTGGTTACGGTCATATCACTTCCCTCTTCGTTGGCCCTATCTTTCGAAGAAAAGGACACGCTACTCGACTTGTGACCATGGCTGAAATGGACTTGGAAAAGCAAGGTGCTGCTTACGTCTCGGTGCCCATCCCAAAGACCAACACTGACGCATTACTCTTCTTCGAAAAGATGGGTTATGAGGAGGTGGCGGTGAAGAGCAATAGTATTGATGGGAATGTTGATGCTAATGTATTCATGACGAAGAAGCTCAAGGGGAAGCAGATGCGTTCTGCGGAGACCGAAGGCAAGAGGCAAGCTGAGGAAGAAGTCAAGGCAGTGACTTCAAAGAAGCAAAAGGTAGACGAGGTTGCTGCCAAACAAAAGGTATTGAAGGTAGTCGAAATTAGTTCCGAGGAATCCTTTGATGAATCTGAGGACATTCTCGTGGATTATCTCTTACCTGACGTGGATCTTGAAAGTTTGGAGAATGGTAAGATTCTTCAAGTCATCGCGGATGATCGCCAAGACGCTATCCTCGGTTACGTCATCTTTGATGTCGTTGAACCGAAGAGTAATGGTTGTGGTCATATCACTTCCATCTTCGTTAACCCTATCTTTCGGAGAGAAGGAGTCGCTTCTAAACTTGTGGAAAGCGCTGAAAAGGACTTGAGGGATAAGCAAGGTGCTGCTTACGTCTCAGTGCCCGTCCCGAAGACCAACTCTGATGGATTACTCTTCTTCGAAAAGATGGGGTATGAGAAGGAGGCAGTGAAGAGCAATTATATTGATGGGAAGGATGATGCTAATAACCCTGCAACAAAAGTTGTTCCATCCAAAAATGGGAGTGCACCTGTAAAGAAAGACGATCTTTATTATTCATCTTCTGAAGAATCTTCTGGTGAATCTTCTGATGAAGATGAGCCTAATACTCCTGCTACACAAAATGTGAACAGTCGTGTGAAGACATTATATGTTGGGAACTTATCCTTCGGTGTGCAAAAATCTGACATAGAAAAATTCTTCCAAGATTGTGGAAAAGTAATTGATGTACGTCTTGCTTCTCATAAGGATGGAAAGCTTAAAGGCTTTGGACATGGAAAAAGACTACTTTTGCCGACGACTAGGGTAGCAGTTTTTTTGCTCAGTTTTGGTGAAGATCTTATGTAA

Protein sequence

>Msa0436780

MVSPGVVVRDATPVDLYKILVNDVFPDVDTQSLVNADDLLGIILGYLVFDVGELKRTGYGHITSLFVGPIFRRKGHATRLVTMAEMDLEKQGAAYVSVPIPKTNTDALLFFEKMGYEEVAVKSNSIDGNVDANVFMTKKLKGKQMRSAETEGKRQAEEEVKAVTSKKQKVDEVAAKQKVLKVVEISSEESFDESEDILVDYLLPDVDLESLENGKILQVIADDRQDAILGYVIFDVVEPKSNGCGHITSIFVNPIFRREGVASKLVESAEKDLRDKQGAAYVSVPVPKTNSDGLLFFEKMGYEKEAVKSNYIDGKDDANNPATKVVPSKNGSAPVKKDDLYYSSSEESSGESSDEDEPNTPATQNVNSRVKTLYVGNLSFGVQKSDIEKFFQDCGKVIDVRLASHKDGKLKGFGHGKRLLLPTTRVAVFLLSFGEDLM*