Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670350 | XP_003604901.1 | 98.950 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 0.0 | 974 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670350 | sp|Q7X9A0|RCA1_LARTR | 81.497 | 481 | 79 | 6 | 1 | 476 | 1 | 476 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670350 | G7JTD2 | 98.950 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 0.0 | 974 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631680 | Msa0670350 | 0.878920 | 1.899969e-69 | -8.615850e-47 |
| Msa0670350 | Msa0686730 | 0.809792 | 1.587834e-50 | -8.615850e-47 |
| Msa0591480 | Msa0670350 | 0.872586 | 2.837551e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670350 | MtrunA17_Chr4g0009431 | 98.950 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 0.0 | 974 |
| Msa0670350 | MtrunA17_Chr5g0435631 | 81.933 | 476 | 85 | 1 | 1 | 476 | 1 | 475 | 0.0 | 829 |
| Msa0670350 | MtrunA17_Chr3g0112121 | 81.963 | 438 | 76 | 3 | 1 | 437 | 1 | 436 | 0.0 | 745 |
| Msa0670350 | MtrunA17_Chr2g0334101 | 54.110 | 292 | 127 | 6 | 134 | 419 | 123 | 413 | 1.97e-109 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670350 | AT2G39730.1 | 78.616 | 477 | 98 | 2 | 1 | 476 | 1 | 474 | 0.0 | 784 |
| Msa0670350 | AT2G39730.2 | 77.629 | 447 | 96 | 2 | 1 | 446 | 1 | 444 | 0.0 | 723 |
| Msa0670350 | AT2G39730.3 | 78.458 | 441 | 91 | 2 | 1 | 440 | 1 | 438 | 0.0 | 720 |
| Msa0670350 | AT1G73110.2 | 51.724 | 319 | 145 | 7 | 107 | 419 | 15 | 330 | 1.21e-110 | 331 |
| Msa0670350 | AT1G73110.1 | 52.564 | 312 | 139 | 7 | 114 | 419 | 119 | 427 | 2.51e-109 | 331 |
Find 145 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATATTGCACCTGCATTTA+TGG | 0.088800 | 4_4:-12799315 | Msa0670350:CDS |
| TATTAAGATTCCTCTCATTT+TGG | 0.116167 | 4_4:-12799246 | Msa0670350:CDS |
| GAGTTTGTCTGGTAACTTTA+AGG | 0.180254 | 4_4:-12800068 | Msa0670350:CDS |
| TCTTCACATTCTCTTGTTCT+TGG | 0.192672 | 4_4:+12797901 | None:intergenic |
| GAAGGGTCAGCGCAACCTTC+TGG | 0.200974 | 4_4:+12797625 | None:intergenic |
| ATGAGAGGAATCTTAATATT+TGG | 0.205578 | 4_4:+12799251 | None:intergenic |
| ACCATTATAATATATGTTAT+TGG | 0.224857 | 4_4:+12800931 | None:intergenic |
| TGCATTAATCTCACCACTTT+AGG | 0.260377 | 4_4:-12797442 | Msa0670350:three_prime_UTR |
| AGCTTTAATGAACACAAATT+TGG | 0.265331 | 4_4:+12797299 | None:intergenic |
| CAATCTTACCAAACTTGTTT+TGG | 0.270482 | 4_4:-12800957 | Msa0670350:five_prime_UTR |
| TCCAATAACATATATTATAA+TGG | 0.285846 | 4_4:-12800932 | Msa0670350:exon |
| GTCTGGTAACTTTAAGGTTT+CGG | 0.299605 | 4_4:-12800062 | Msa0670350:CDS |
| TCTCCGGCACTCATCATTAT+AGG | 0.300655 | 4_4:+12798959 | None:intergenic |
| AGCCACACAAATGAAGAAAT+TGG | 0.311545 | 4_4:+12801180 | None:intergenic |
| TTGTACCTGTGCCATGTTAA+TGG | 0.318352 | 4_4:+12800885 | None:intergenic |
| TGATATGTTCAGGTACAATA+TGG | 0.328301 | 4_4:-12799357 | Msa0670350:intron |
| ATTGGAAACCAAAACAAGTT+TGG | 0.330403 | 4_4:+12800949 | None:intergenic |
| TATTTACCTGATTCCCATCT+TGG | 0.330825 | 4_4:+12799169 | None:intergenic |
| CTTTGCCTAATCAACTTTGC+AGG | 0.332302 | 4_4:+12798911 | None:intergenic |
| AATGCACCTTACATAAAATA+TGG | 0.337542 | 4_4:+12797459 | None:intergenic |
| AGCTTGTCAATAGTCATCTT+TGG | 0.340251 | 4_4:+12797948 | None:intergenic |
| TAACAAAAGAAAAGAATCTA+TGG | 0.350254 | 4_4:+12801135 | None:intergenic |
| CTTAAGTGAGTACATAAATA+TGG | 0.350516 | 4_4:-12797535 | Msa0670350:three_prime_UTR |
| GCAACTTCCATCGTCACTTC+TGG | 0.351528 | 4_4:+12797579 | None:intergenic |
| AATGATGAGTGCCGGAGAAT+TGG | 0.354739 | 4_4:-12798954 | Msa0670350:CDS |
| TCATTGCCAGTGACAATGAT+AGG | 0.358684 | 4_4:+12798680 | None:intergenic |
| ATACGTCCATCACGAATTAA+AGG | 0.360045 | 4_4:+12798638 | None:intergenic |
| ATCAAGACTGGAAACTTCTA+TGG | 0.360535 | 4_4:-12797816 | Msa0670350:intron |
| TTTATTGTATTATTATTGTT+AGG | 0.364417 | 4_4:+12801204 | None:intergenic |
| TCCAGCCCATCTGTCCTTTG+AGG | 0.369839 | 4_4:+12800009 | None:intergenic |
| TCGCAGAACTCGCTTTCTTA+AGG | 0.371395 | 4_4:+12800104 | None:intergenic |
| CTCTTCTTTGTTGTACATAC+CGG | 0.388448 | 4_4:+12798715 | None:intergenic |
| AGTTACCAGACAAACTCTTC+TGG | 0.399477 | 4_4:+12800074 | None:intergenic |
| AAGGGTCAGCGCAACCTTCT+GGG | 0.410738 | 4_4:+12797626 | None:intergenic |
| CCTACCAATGTTCAACTTCC+CGG | 0.413313 | 4_4:-12798734 | Msa0670350:CDS |
| GAGCTGAGTTCCAAAGTGAT+TGG | 0.413769 | 4_4:+12801003 | None:intergenic |
| TGAGGGTTGCATTTACCATC+TGG | 0.421559 | 4_4:+12798774 | None:intergenic |
| TTTCAAGCTCCAACGGATGC+TGG | 0.424875 | 4_4:-12799920 | Msa0670350:CDS |
| AAGATTGTTGACACATTCCC+TGG | 0.427660 | 4_4:-12798521 | Msa0670350:CDS |
| TCTTTGCCAAGATGGGAATC+AGG | 0.428867 | 4_4:-12799175 | Msa0670350:intron |
| GAGAGCCTGCAAAGTTGATT+AGG | 0.432564 | 4_4:-12798916 | Msa0670350:CDS |
| GAAGTCAGGAATTGGATATC+TGG | 0.433568 | 4_4:-12798038 | Msa0670350:CDS |
| GTAACTTCTGTGACAATTGT+TGG | 0.434618 | 4_4:-12800910 | Msa0670350:CDS |
| TACCTCAGTGAGGCAGCTCT+TGG | 0.438518 | 4_4:-12797858 | Msa0670350:CDS |
| ATGACGATGAAGTCAGGAAT+TGG | 0.439434 | 4_4:-12798046 | Msa0670350:CDS |
| TCCAGCCAGAAGAGTTTGTC+TGG | 0.441643 | 4_4:-12800079 | Msa0670350:CDS |
| AATATGGACAACACAGTTGA+TGG | 0.443646 | 4_4:-12799341 | Msa0670350:CDS |
| ATCTTTGGTTGCTCGAAAGT+TGG | 0.445047 | 4_4:+12797963 | None:intergenic |
| ATCTTGACAATGTCATCCTT+AGG | 0.455344 | 4_4:+12798539 | None:intergenic |
| TTCCCCTTGTGATATCCTGT+TGG | 0.457655 | 4_4:+12799963 | None:intergenic |
| ACATTCCCTGGACAGTCAAT+TGG | 0.468125 | 4_4:-12798509 | Msa0670350:intron |
| CAACCTTCTGGGACAGGTAA+AGG | 0.470524 | 4_4:+12797637 | None:intergenic |
| TTGTGTTCATTAAAGCTAGC+TGG | 0.471924 | 4_4:-12797293 | Msa0670350:three_prime_UTR |
| GGCTTACCAATTGACTGTCC+AGG | 0.479453 | 4_4:+12798503 | None:intergenic |
| CAGGATATCACAAGGGGAAA+GGG | 0.479596 | 4_4:-12799959 | Msa0670350:CDS |
| TTTGGTTGCTCGAAAGTTGG+AGG | 0.479859 | 4_4:+12797966 | None:intergenic |
| ACCTCAAAGGACAGATGGGC+TGG | 0.482103 | 4_4:-12800010 | Msa0670350:CDS |
| TTGGGCATTTGGGGAGGCAA+AGG | 0.485012 | 4_4:-12799227 | Msa0670350:CDS |
| TGAATATTAAGAAGAAGAAA+TGG | 0.485618 | 4_4:+12800981 | None:intergenic |
| GAGTGTATGACGATGAAGTC+AGG | 0.487351 | 4_4:-12798052 | Msa0670350:CDS |
| AATGATGATGCTATCAAGAC+TGG | 0.490396 | 4_4:-12797828 | Msa0670350:CDS |
| GCGTCCGACATTATCAGAAA+AGG | 0.490506 | 4_4:-12798878 | Msa0670350:CDS |
| TCAACTCAATCCAATCACTT+TGG | 0.491749 | 4_4:-12801013 | Msa0670350:five_prime_UTR |
| TTCATCAATGATCTTGATGC+AGG | 0.493471 | 4_4:-12798839 | Msa0670350:CDS |
| TGACACCTCAGATGACCAAC+AGG | 0.496044 | 4_4:-12799978 | Msa0670350:CDS |
| CCGGGAAGTTGAACATTGGT+AGG | 0.497705 | 4_4:+12798734 | None:intergenic |
| TGATGCAGGAGCAGGTAGAA+TGG | 0.503606 | 4_4:-12798825 | Msa0670350:CDS |
| CGCGTCCCTATCATTGTCAC+TGG | 0.504617 | 4_4:-12798686 | Msa0670350:CDS |
| GAATTGGAAAGCGGAAATGC+AGG | 0.508420 | 4_4:-12798938 | Msa0670350:CDS |
| CATCTTATAGAAAGCAATGT+TGG | 0.509991 | 4_4:-12797361 | Msa0670350:three_prime_UTR |
| TTGTTATTGATGGTGTCCTA+TGG | 0.510429 | 4_4:-12797408 | Msa0670350:three_prime_UTR |
| ATTGACAAGCTACTAGAATA+CGG | 0.510760 | 4_4:-12797936 | Msa0670350:CDS |
| TTGAGTTGATAGAAAGAGAG+AGG | 0.512962 | 4_4:+12801032 | None:intergenic |
| AGCAGACCTCAAAGGACAGA+TGG | 0.514834 | 4_4:-12800015 | Msa0670350:CDS |
| TCCTATGATTATATCAGTAC+CGG | 0.515211 | 4_4:-12799875 | Msa0670350:CDS |
| ATTTCCGCTTTCCAATTCTC+CGG | 0.516319 | 4_4:+12798943 | None:intergenic |
| GATGCAGGAGCAGGTAGAAT+GGG | 0.517389 | 4_4:-12798824 | Msa0670350:CDS |
| TCAGCGCAACCTTCTGGGAC+AGG | 0.517907 | 4_4:+12797631 | None:intergenic |
| TCTTGACAATGTCATCCTTA+GGG | 0.521614 | 4_4:+12798540 | None:intergenic |
| CAGGACAGATGGTGTCCCTA+AGG | 0.522125 | 4_4:-12798555 | Msa0670350:CDS |
| AATGATCTTGATGCAGGAGC+AGG | 0.524681 | 4_4:-12798833 | Msa0670350:CDS |
| AGCCAATTTCTTCATTTGTG+TGG | 0.525234 | 4_4:-12801182 | Msa0670350:five_prime_UTR |
| TTTAATTCGTGATGGACGTA+TGG | 0.525860 | 4_4:-12798636 | Msa0670350:CDS |
| ACAGGATATCACAAGGGGAA+AGG | 0.531778 | 4_4:-12799960 | Msa0670350:CDS |
| TTGAACTTACTGGCGAAGAC+CGG | 0.531864 | 4_4:+12799856 | None:intergenic |
| ACCGGTACTGATATAATCAT+AGG | 0.533522 | 4_4:+12799874 | None:intergenic |
| AAGACTTGTGAATTCAAAAG+AGG | 0.535398 | 4_4:-12797991 | Msa0670350:CDS |
| TATGCTCCTTTAATTCGTGA+TGG | 0.537959 | 4_4:-12798644 | Msa0670350:CDS |
| TATCACAAGGGGAAAGGGAA+AGG | 0.540011 | 4_4:-12799954 | Msa0670350:CDS |
| GGTATCGGTGTGGAGAGTAT+TGG | 0.540794 | 4_4:-12798017 | Msa0670350:CDS |
| TGAGCTTGTCTTTGCCAAGA+TGG | 0.545502 | 4_4:-12799183 | Msa0670350:CDS |
| TGTATGCAGTTGAAATTGAA+TGG | 0.547614 | 4_4:-12800175 | Msa0670350:intron |
| AATTCTCAAAACTCAACCAT+AGG | 0.555746 | 4_4:+12797392 | None:intergenic |
| GCTTACCAATTGACTGTCCA+GGG | 0.556345 | 4_4:+12798504 | None:intergenic |
| GATAGAAAGAGAGAGGTGAG+AGG | 0.557033 | 4_4:+12801039 | None:intergenic |
| ACCAGACAAACTCTTCTGGC+TGG | 0.558437 | 4_4:+12800078 | None:intergenic |
| CCATCGTCACTTCTGGCTGT+CGG | 0.561082 | 4_4:+12797586 | None:intergenic |
| ATTTGGGGAGGCAAAGGTCA+AGG | 0.561672 | 4_4:-12799221 | Msa0670350:CDS |
| CAGTGTCTTTCAAGCTCCAA+CGG | 0.565417 | 4_4:-12799927 | Msa0670350:CDS |
| TGATAATGTCGGACGCCTCG+CGG | 0.566027 | 4_4:+12798885 | None:intergenic |
| ACAAGCTTGTCCATAAATGC+AGG | 0.573184 | 4_4:+12799305 | None:intergenic |
| AAGAACAAGAGAATGTGAAG+AGG | 0.574498 | 4_4:-12797899 | Msa0670350:CDS |
| GGTTGTCAGCAATGTTCATG+AGG | 0.579374 | 4_4:+12798756 | None:intergenic |
| TCTTCTTTGTTGTACATACC+GGG | 0.579969 | 4_4:+12798716 | None:intergenic |
| GTTCCTTTACCTGTCCCAGA+AGG | 0.583970 | 4_4:-12797640 | Msa0670350:CDS |
| CAGTGACAATGATAGGGACG+CGG | 0.585965 | 4_4:+12798687 | None:intergenic |
| ACTAGAATACGGAAATATGT+TGG | 0.586255 | 4_4:-12797925 | Msa0670350:CDS |
| CGGGAAGTTGAACATTGGTA+GGG | 0.586332 | 4_4:+12798735 | None:intergenic |
| GATAGAGTTGGTGTCTGTCA+AGG | 0.586918 | 4_4:-12798584 | Msa0670350:CDS |
| CCCCAAATGCCCAAAATGAG+AGG | 0.592582 | 4_4:+12799236 | None:intergenic |
| AGATGATTGTGCAAAATGAA+AGG | 0.592889 | 4_4:+12797324 | None:intergenic |
| GCAGACCTCAAAGGACAGAT+GGG | 0.592933 | 4_4:-12800014 | Msa0670350:CDS |
| CATTGCCAGTGACAATGATA+GGG | 0.593925 | 4_4:+12798681 | None:intergenic |
| GAGCTTGTCTTTGCCAAGAT+GGG | 0.595810 | 4_4:-12799182 | Msa0670350:CDS |
| AGTCCTATAATGATGAGTGC+CGG | 0.597253 | 4_4:-12798962 | Msa0670350:CDS |
| TGGAGCCATTAACATGGCAC+AGG | 0.599758 | 4_4:-12800890 | Msa0670350:intron |
| GTCATACACTCTCGCCCTCA+AGG | 0.600696 | 4_4:+12798064 | None:intergenic |
| CACAAGGGGAAAGGGAAAGG+TGG | 0.605010 | 4_4:-12799951 | Msa0670350:CDS |
| GTTGTCAGCAATGTTCATGA+GGG | 0.605287 | 4_4:+12798757 | None:intergenic |
| AAATTGAATGGCTCTAGCAG+TGG | 0.608023 | 4_4:-12800163 | Msa0670350:CDS |
| AGACTTGTGAATTCAAAAGA+GGG | 0.610232 | 4_4:-12797990 | Msa0670350:CDS |
| AGGAATTGGATATCTGGTAT+CGG | 0.611589 | 4_4:-12798032 | Msa0670350:CDS |
| TAGTGAGTTCCAGCATCCGT+TGG | 0.612756 | 4_4:+12799911 | None:intergenic |
| AGAACAAGAGAATGTGAAGA+GGG | 0.613350 | 4_4:-12797898 | Msa0670350:CDS |
| AATTGTTGGAGCCATTAACA+TGG | 0.617506 | 4_4:-12800896 | Msa0670350:CDS |
| TGAGGAAAAGCAGACCTCAA+AGG | 0.617972 | 4_4:-12800023 | Msa0670350:CDS |
| GATATCCTGTTGGTCATCTG+AGG | 0.618471 | 4_4:+12799973 | None:intergenic |
| CTGCAAAGTTGATTAGGCAA+AGG | 0.623429 | 4_4:-12798910 | Msa0670350:CDS |
| TGATTGTGCAAAATGAAAGG+AGG | 0.628397 | 4_4:+12797327 | None:intergenic |
| CCGACAGCCAGAAGTGACGA+TGG | 0.630990 | 4_4:-12797586 | Msa0670350:CDS |
| GCAGGAGCAGGTAGAATGGG+TGG | 0.631428 | 4_4:-12798821 | Msa0670350:CDS |
| AGTGACAATGATAGGGACGC+GGG | 0.638174 | 4_4:+12798688 | None:intergenic |
| GACCAACAGGATATCACAAG+GGG | 0.645088 | 4_4:-12799965 | Msa0670350:CDS |
| CATACCGGGAAGTTGAACAT+TGG | 0.657559 | 4_4:+12798730 | None:intergenic |
| ATACACAGTCAATAACCAGA+TGG | 0.667649 | 4_4:-12798789 | Msa0670350:CDS |
| CCAACTCTATCGTCACGAGT+AGG | 0.670442 | 4_4:+12798596 | None:intergenic |
| TTGGATATCTGGTATCGGTG+TGG | 0.671423 | 4_4:-12798027 | Msa0670350:CDS |
| ATGACCAACAGGATATCACA+AGG | 0.671981 | 4_4:-12799967 | Msa0670350:CDS |
| CCTACTCGTGACGATAGAGT+TGG | 0.672529 | 4_4:-12798596 | Msa0670350:CDS |
| TGAAGAAAGTTAAAGCTGAG+TGG | 0.675239 | 4_4:+12801079 | None:intergenic |
| AGTGCCGGAGAATTGGAAAG+CGG | 0.700816 | 4_4:-12798947 | Msa0670350:CDS |
| TGACCAACAGGATATCACAA+GGG | 0.701639 | 4_4:-12799966 | Msa0670350:CDS |
| CTCCAAGAGCTGCCTCACTG+AGG | 0.729949 | 4_4:+12797856 | None:intergenic |
| AGCTGACAAATACCTCAGTG+AGG | 0.750394 | 4_4:-12797868 | Msa0670350:CDS |
| GATTAGGCAAAGGTACCGCG+AGG | 0.757619 | 4_4:-12798900 | Msa0670350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATATACATAAAAAAAAAT+TGG | - | chr4_4:12797680-12797699 | Msa0670350:intron | 10.0% |
| !!! | ATTAATTTTAGTGATATTAA+TGG | + | chr4_4:12797807-12797826 | None:intergenic | 10.0% |
| !! | AATATACTTCAAAAAATAAT+CGG | + | chr4_4:12797846-12797865 | None:intergenic | 10.0% |
| !!! | TTAAATCTATAAATATTTTG+AGG | - | chr4_4:12798897-12798916 | Msa0670350:CDS | 10.0% |
| !!! | TTTCTGTTATTATTTTTAAA+AGG | - | chr4_4:12800652-12800671 | Msa0670350:intron | 10.0% |
| !! | TCCAATAACATATATTATAA+TGG | - | chr4_4:12797499-12797518 | Msa0670350:three_prime_UTR | 15.0% |
| !! | ACCATTATAATATATGTTAT+TGG | + | chr4_4:12797503-12797522 | None:intergenic | 15.0% |
| !! | ATATACTTCAAAAAATAATC+GGG | + | chr4_4:12797845-12797864 | None:intergenic | 15.0% |
| !!! | TTGAAGTATATTTTATACAT+AGG | - | chr4_4:12797854-12797873 | Msa0670350:CDS | 15.0% |
| !!! | TTCTTGTTTTATTTGATTTA+TGG | - | chr4_4:12798873-12798892 | Msa0670350:CDS | 15.0% |
| !! | AATAATAACAGAAAAATCAA+AGG | + | chr4_4:12800646-12800665 | None:intergenic | 15.0% |
| !!! | TGTATAATTTTTGTTATTGA+TGG | - | chr4_4:12801013-12801032 | Msa0670350:five_prime_UTR | 15.0% |
| !! | TAACAAAAGAAAAGAATCTA+TGG | + | chr4_4:12797299-12797318 | None:intergenic | 20.0% |
| !! | TGAATATTAAGAAGAAGAAA+TGG | + | chr4_4:12797453-12797472 | None:intergenic | 20.0% |
| !!! | TGCACATGAATATTTTATAT+AGG | + | chr4_4:12797880-12797899 | None:intergenic | 20.0% |
| !! | TACAAATAGATACATATAGA+AGG | + | chr4_4:12797903-12797922 | None:intergenic | 20.0% |
| !!! | ATGCTAATTGACTTATTTTT+AGG | - | chr4_4:12798676-12798695 | Msa0670350:CDS | 20.0% |
| !! | ATAAATATAAGTACCTTGTT+TGG | + | chr4_4:12800262-12800281 | None:intergenic | 20.0% |
| !!! | CATTTCTTTGTAGATTTTTT+TGG | - | chr4_4:12800342-12800361 | Msa0670350:intron | 20.0% |
| !! | AAACAATAAGATAACATTCT+TGG | + | chr4_4:12800746-12800765 | None:intergenic | 20.0% |
| !! | AAGAATGTTATCTTATTGTT+TGG | - | chr4_4:12800745-12800764 | Msa0670350:intron | 20.0% |
| !! | AAAAATTATACAACCTAAAG+TGG | + | chr4_4:12801005-12801024 | None:intergenic | 20.0% |
| !!! | TTGTTTTATATAACTTGTTC+AGG | + | chr4_4:12801194-12801213 | None:intergenic | 20.0% |
| ! | CTATTTGTATGAGTGTTAAT+AGG | - | chr4_4:12797914-12797933 | Msa0670350:CDS | 25.0% |
| !! | GTTCCAATTTTCATTCAATT+TGG | - | chr4_4:12798193-12798212 | Msa0670350:intron | 25.0% |
| ! | ACTCCAAATTGAATGAAAAT+TGG | + | chr4_4:12798199-12798218 | None:intergenic | 25.0% |
| ! | AAAAATGCTGAATTTGTCAT+AGG | + | chr4_4:12798298-12798317 | None:intergenic | 25.0% |
| !! | ATGACAAATTCAGCATTTTT+CGG | - | chr4_4:12798298-12798317 | Msa0670350:intron | 25.0% |
| ! | AATCTTTGTTAGCTGAATTA+AGG | + | chr4_4:12798605-12798624 | None:intergenic | 25.0% |
| !!! | TTGACTTATTTTTAGGTACA+TGG | - | chr4_4:12798683-12798702 | Msa0670350:CDS | 25.0% |
| !!! | ATTTTTAGGTACATGGTTAT+CGG | - | chr4_4:12798690-12798709 | Msa0670350:CDS | 25.0% |
| ! | ATCAATCATCATAATGATTC+GGG | + | chr4_4:12798753-12798772 | None:intergenic | 25.0% |
| ! | CATCAATCATCATAATGATT+CGG | + | chr4_4:12798754-12798773 | None:intergenic | 25.0% |
| !!! | GCTACACAATTTTAACAAAA+AGG | + | chr4_4:12798844-12798863 | None:intergenic | 25.0% |
| ! | AGGTTAGTAGATAATAATCT+AGG | - | chr4_4:12798917-12798936 | Msa0670350:CDS | 25.0% |
| ! | ATGAGAGGAATCTTAATATT+TGG | + | chr4_4:12799183-12799202 | None:intergenic | 25.0% |
| !! | TATTAAGATTCCTCTCATTT+TGG | - | chr4_4:12799185-12799204 | Msa0670350:CDS | 25.0% |
| !! | ATTAAGATTCCTCTCATTTT+GGG | - | chr4_4:12799186-12799205 | Msa0670350:CDS | 25.0% |
| ! | ATCAGGTAAATAAAAATGAC+AGG | - | chr4_4:12799273-12799292 | Msa0670350:CDS | 25.0% |
| !! | CTTTTGTTAGTAGATAAAAC+AGG | + | chr4_4:12799998-12800017 | None:intergenic | 25.0% |
| !! | TAAGTCTTTTTATCCAAACA+AGG | - | chr4_4:12800246-12800265 | Msa0670350:intron | 25.0% |
| ! | CTTAAGTGAGTACATAAATA+TGG | - | chr4_4:12800896-12800915 | Msa0670350:CDS | 25.0% |
| !! | CATTCACCATATTTTATGTA+AGG | - | chr4_4:12800966-12800985 | Msa0670350:five_prime_UTR | 25.0% |
| ! | AATGCACCTTACATAAAATA+TGG | + | chr4_4:12800975-12800994 | None:intergenic | 25.0% |
| !! | AGCTTTAATGAACACAAATT+TGG | + | chr4_4:12801135-12801154 | None:intergenic | 25.0% |
| !! | CAATCTTACCAAACTTGTTT+TGG | - | chr4_4:12797474-12797493 | Msa0670350:three_prime_UTR | 30.0% |
| ATTGGAAACCAAAACAAGTT+TGG | + | chr4_4:12797485-12797504 | None:intergenic | 30.0% | |
| ATGCTCTTCTTAACAAACTT+TGG | - | chr4_4:12797568-12797587 | Msa0670350:CDS | 30.0% | |
| ACTTCAAAAAATAATCGGGA+AGG | + | chr4_4:12797841-12797860 | None:intergenic | 30.0% | |
| ! | ATCTGCAAGATTTTAGATTG+TGG | - | chr4_4:12797957-12797976 | Msa0670350:CDS | 30.0% |
| CAATTTGGACTGTTATATCA+AGG | + | chr4_4:12798084-12798103 | None:intergenic | 30.0% | |
| AGTCATGGTTTCAAAAGAAA+AGG | + | chr4_4:12798117-12798136 | None:intergenic | 30.0% | |
| AATGAAAATTGGAACAGACT+CGG | + | chr4_4:12798188-12798207 | None:intergenic | 30.0% | |
| ! | TTCATTCAATTTGGAGTTCA+TGG | - | chr4_4:12798202-12798221 | Msa0670350:intron | 30.0% |
| GGTTAATTGAGGACTAATAA+CGG | - | chr4_4:12798223-12798242 | Msa0670350:intron | 30.0% | |
| TGTATGCAGTTGAAATTGAA+TGG | - | chr4_4:12798256-12798275 | Msa0670350:intron | 30.0% | |
| GGCAAAAATTGACTATAATG+AGG | - | chr4_4:12798390-12798409 | Msa0670350:intron | 30.0% | |
| TCCTATGATTATATCAGTAC+CGG | - | chr4_4:12798556-12798575 | Msa0670350:CDS | 30.0% | |
| ! | AATCTCGATTTGATATGTTC+AGG | - | chr4_4:12799064-12799083 | Msa0670350:intron | 30.0% |
| TGATATGTTCAGGTACAATA+TGG | - | chr4_4:12799074-12799093 | Msa0670350:intron | 30.0% | |
| GCAATGGAATTAAACTAACT+TGG | + | chr4_4:12799323-12799342 | None:intergenic | 30.0% | |
| !! | CTTTCCTTTTCTGATAATGT+CGG | + | chr4_4:12799560-12799579 | None:intergenic | 30.0% |
| ACGTATGGAAAAATTCTACT+GGG | - | chr4_4:12799810-12799829 | Msa0670350:intron | 30.0% | |
| TTGAAACTTAGATTGAGGTA+TGG | + | chr4_4:12799952-12799971 | None:intergenic | 30.0% | |
| ! | TTGACTTGAAACTTAGATTG+AGG | + | chr4_4:12799957-12799976 | None:intergenic | 30.0% |
| !! | AGTCAAAATTTCTAGCTACT+AGG | - | chr4_4:12799971-12799990 | Msa0670350:CDS | 30.0% |
| !! | GTCAAAATTTCTAGCTACTA+GGG | - | chr4_4:12799972-12799991 | Msa0670350:CDS | 30.0% |
| AATGATCTGAAAACAGCTTA+TGG | + | chr4_4:12800070-12800089 | None:intergenic | 30.0% | |
| AAAGTCTCAAACTCATATCA+TGG | + | chr4_4:12800291-12800310 | None:intergenic | 30.0% | |
| ! | ATGATATGAGTTTGAGACTT+TGG | - | chr4_4:12800290-12800309 | Msa0670350:intron | 30.0% |
| AAGACTTGTGAATTCAAAAG+AGG | - | chr4_4:12800440-12800459 | Msa0670350:intron | 30.0% | |
| AGACTTGTGAATTCAAAAGA+GGG | - | chr4_4:12800441-12800460 | Msa0670350:intron | 30.0% | |
| ATTGACAAGCTACTAGAATA+CGG | - | chr4_4:12800495-12800514 | Msa0670350:intron | 30.0% | |
| ACTAGAATACGGAAATATGT+TGG | - | chr4_4:12800506-12800525 | Msa0670350:intron | 30.0% | |
| !! | TTCGTCTAAAGCAAACTTTT+AGG | + | chr4_4:12800683-12800702 | None:intergenic | 30.0% |
| TTATCTTATTGTTTGGATGC+AGG | - | chr4_4:12800752-12800771 | Msa0670350:intron | 30.0% | |
| AATTCTCAAAACTCAACCAT+AGG | + | chr4_4:12801042-12801061 | None:intergenic | 30.0% | |
| CATCTTATAGAAAGCAATGT+TGG | - | chr4_4:12801070-12801089 | Msa0670350:five_prime_UTR | 30.0% | |
| AGATGATTGTGCAAAATGAA+AGG | + | chr4_4:12801110-12801129 | None:intergenic | 30.0% | |
| AGCCAATTTCTTCATTTGTG+TGG | - | chr4_4:12797249-12797268 | Msa0670350:three_prime_UTR | 35.0% | |
| AGCCACACAAATGAAGAAAT+TGG | + | chr4_4:12797254-12797273 | None:intergenic | 35.0% | |
| TGAAGAAAGTTAAAGCTGAG+TGG | + | chr4_4:12797355-12797374 | None:intergenic | 35.0% | |
| !! | TTGAGTTGATAGAAAGAGAG+AGG | + | chr4_4:12797402-12797421 | None:intergenic | 35.0% |
| TCAACTCAATCCAATCACTT+TGG | - | chr4_4:12797418-12797437 | Msa0670350:three_prime_UTR | 35.0% | |
| GTAACTTCTGTGACAATTGT+TGG | - | chr4_4:12797521-12797540 | Msa0670350:three_prime_UTR | 35.0% | |
| AATTGTTGGAGCCATTAACA+TGG | - | chr4_4:12797535-12797554 | Msa0670350:three_prime_UTR | 35.0% | |
| CTAGATTAGCGATAAGAGTT+TGG | - | chr4_4:12797725-12797744 | Msa0670350:intron | 35.0% | |
| TACAATTCTCCACGATATCA+AGG | + | chr4_4:12798001-12798020 | None:intergenic | 35.0% | |
| TTGGAGTTCATGGTTAATTG+AGG | - | chr4_4:12798212-12798231 | Msa0670350:intron | 35.0% | |
| GAGTTTGTCTGGTAACTTTA+AGG | - | chr4_4:12798363-12798382 | Msa0670350:intron | 35.0% | |
| !! | GTCTGGTAACTTTAAGGTTT+CGG | - | chr4_4:12798369-12798388 | Msa0670350:intron | 35.0% |
| !! | ACCGGTACTGATATAATCAT+AGG | + | chr4_4:12798560-12798579 | None:intergenic | 35.0% |
| TTAAGGCGAATTGAACTTAC+TGG | + | chr4_4:12798588-12798607 | None:intergenic | 35.0% | |
| ! | CTAACAAAGATTTGAAGCTC+AGG | - | chr4_4:12798613-12798632 | Msa0670350:CDS | 35.0% |
| AGATTCATCACTGTGAATCA+TGG | + | chr4_4:12798779-12798798 | None:intergenic | 35.0% | |
| AGGATGACTACAACAAGTTT+AGG | + | chr4_4:12798824-12798843 | None:intergenic | 35.0% | |
| TGTGTAAGAACAAGTGACAT+AGG | + | chr4_4:12798953-12798972 | None:intergenic | 35.0% | |
| AATATGGACAACACAGTTGA+TGG | - | chr4_4:12799090-12799109 | Msa0670350:intron | 35.0% | |
| GTATATTGCACCTGCATTTA+TGG | - | chr4_4:12799116-12799135 | Msa0670350:intron | 35.0% | |
| TATTTACCTGATTCCCATCT+TGG | + | chr4_4:12799265-12799284 | None:intergenic | 35.0% | |
| CACACACATACTATGATACT+TGG | - | chr4_4:12799373-12799392 | Msa0670350:intron | 35.0% | |
| CATACTATGATACTTGGCTT+AGG | - | chr4_4:12799379-12799398 | Msa0670350:intron | 35.0% | |
| AACTCTTTGATCTACTGCTT+TGG | - | chr4_4:12799440-12799459 | Msa0670350:intron | 35.0% | |
| TTCATCAATGATCTTGATGC+AGG | - | chr4_4:12799592-12799611 | Msa0670350:intron | 35.0% | |
| ATACACAGTCAATAACCAGA+TGG | - | chr4_4:12799642-12799661 | Msa0670350:intron | 35.0% | |
| ! | TCTTCTTTGTTGTACATACC+GGG | + | chr4_4:12799718-12799737 | None:intergenic | 35.0% |
| ! | CTCTTCTTTGTTGTACATAC+CGG | + | chr4_4:12799719-12799738 | None:intergenic | 35.0% |
| TATGCTCCTTTAATTCGTGA+TGG | - | chr4_4:12799787-12799806 | Msa0670350:intron | 35.0% | |
| ATACGTCCATCACGAATTAA+AGG | + | chr4_4:12799796-12799815 | None:intergenic | 35.0% | |
| !! | TTTAATTCGTGATGGACGTA+TGG | - | chr4_4:12799795-12799814 | Msa0670350:intron | 35.0% |
| GACGTATGGAAAAATTCTAC+TGG | - | chr4_4:12799809-12799828 | Msa0670350:intron | 35.0% | |
| TCTTGACAATGTCATCCTTA+GGG | + | chr4_4:12799894-12799913 | None:intergenic | 35.0% | |
| ATCTTGACAATGTCATCCTT+AGG | + | chr4_4:12799895-12799914 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCA+TGG | + | chr4_4:12800104-12800123 | None:intergenic | 35.0% |
| !!! | TAGATTTTTTTGGTGCCTTG+AGG | - | chr4_4:12800352-12800371 | Msa0670350:intron | 35.0% |
| !!! | AGATTTTTTTGGTGCCTTGA+GGG | - | chr4_4:12800353-12800372 | Msa0670350:intron | 35.0% |
| AGGAATTGGATATCTGGTAT+CGG | - | chr4_4:12800399-12800418 | Msa0670350:intron | 35.0% | |
| AGCTTGTCAATAGTCATCTT+TGG | + | chr4_4:12800486-12800505 | None:intergenic | 35.0% | |
| TCTTCACATTCTCTTGTTCT+TGG | + | chr4_4:12800533-12800552 | None:intergenic | 35.0% | |
| AAGAACAAGAGAATGTGAAG+AGG | - | chr4_4:12800532-12800551 | Msa0670350:intron | 35.0% | |
| AGAACAAGAGAATGTGAAGA+GGG | - | chr4_4:12800533-12800552 | Msa0670350:intron | 35.0% | |
| ! | AATGATGATGCTATCAAGAC+TGG | - | chr4_4:12800603-12800622 | Msa0670350:intron | 35.0% |
| ATCAAGACTGGAAACTTCTA+TGG | - | chr4_4:12800615-12800634 | Msa0670350:intron | 35.0% | |
| ! | GATCATAGTTTTCTGCAGAA+GGG | + | chr4_4:12800826-12800845 | None:intergenic | 35.0% |
| TGCATTAATCTCACCACTTT+AGG | - | chr4_4:12800989-12801008 | Msa0670350:five_prime_UTR | 35.0% | |
| !! | TTGTTATTGATGGTGTCCTA+TGG | - | chr4_4:12801023-12801042 | Msa0670350:five_prime_UTR | 35.0% |
| TGATTGTGCAAAATGAAAGG+AGG | + | chr4_4:12801107-12801126 | None:intergenic | 35.0% | |
| TTGTGTTCATTAAAGCTAGC+TGG | - | chr4_4:12801138-12801157 | Msa0670350:five_prime_UTR | 35.0% | |
| TTGTACCTGTGCCATGTTAA+TGG | + | chr4_4:12797549-12797568 | None:intergenic | 40.0% | |
| GCACATCTTGGACATAAGAA+TGG | + | chr4_4:12797706-12797725 | None:intergenic | 40.0% | |
| ATCGCTAATCTAGCACATCT+TGG | + | chr4_4:12797718-12797737 | None:intergenic | 40.0% | |
| GATTTGAACTCTATCCCTTG+AGG | + | chr4_4:12797759-12797778 | None:intergenic | 40.0% | |
| CATTGCAATCCTTGATATCG+TGG | - | chr4_4:12797989-12798008 | Msa0670350:CDS | 40.0% | |
| TCAAAACTTGGTCGTGATTG+AGG | + | chr4_4:12798044-12798063 | None:intergenic | 40.0% | |
| !!! | TCACGACCAAGTTTTGATTG+CGG | - | chr4_4:12798047-12798066 | Msa0670350:CDS | 40.0% |
| ATGTCTCCGCAATCAAAACT+TGG | + | chr4_4:12798056-12798075 | None:intergenic | 40.0% | |
| AAAGGTTTGCAGCTGCAATT+TGG | + | chr4_4:12798099-12798118 | None:intergenic | 40.0% | |
| AGACTACAGACTTAGAGTCA+TGG | + | chr4_4:12798132-12798151 | None:intergenic | 40.0% | |
| !! | AAATTGAATGGCTCTAGCAG+TGG | - | chr4_4:12798268-12798287 | Msa0670350:intron | 40.0% |
| AGTTACCAGACAAACTCTTC+TGG | + | chr4_4:12798360-12798379 | None:intergenic | 40.0% | |
| ATGACCAACAGGATATCACA+AGG | - | chr4_4:12798464-12798483 | Msa0670350:intron | 40.0% | |
| TGACCAACAGGATATCACAA+GGG | - | chr4_4:12798465-12798484 | Msa0670350:intron | 40.0% | |
| ACAAGCTTGTCCATAAATGC+AGG | + | chr4_4:12799129-12799148 | None:intergenic | 40.0% | |
| ! | TTCCTCTCATTTTGGGCATT+TGG | - | chr4_4:12799193-12799212 | Msa0670350:CDS | 40.0% |
| ! | TCCTCTCATTTTGGGCATTT+GGG | - | chr4_4:12799194-12799213 | Msa0670350:CDS | 40.0% |
| ATGATACTTGGCTTAGGCTT+AGG | - | chr4_4:12799385-12799404 | Msa0670350:intron | 40.0% | |
| AGTCCTATAATGATGAGTGC+CGG | - | chr4_4:12799469-12799488 | Msa0670350:intron | 40.0% | |
| ATTTCCGCTTTCCAATTCTC+CGG | + | chr4_4:12799491-12799510 | None:intergenic | 40.0% | |
| CTTTGCCTAATCAACTTTGC+AGG | + | chr4_4:12799523-12799542 | None:intergenic | 40.0% | |
| ! | CTGCAAAGTTGATTAGGCAA+AGG | - | chr4_4:12799521-12799540 | Msa0670350:intron | 40.0% |
| GTTGTCAGCAATGTTCATGA+GGG | + | chr4_4:12799677-12799696 | None:intergenic | 40.0% | |
| CATTGCCAGTGACAATGATA+GGG | + | chr4_4:12799753-12799772 | None:intergenic | 40.0% | |
| TCATTGCCAGTGACAATGAT+AGG | + | chr4_4:12799754-12799773 | None:intergenic | 40.0% | |
| !! | GTGTCTGTCAAGGTATTTTC+AGG | - | chr4_4:12799857-12799876 | Msa0670350:intron | 40.0% |
| !! | CAAGGTATTTTCAGGACAGA+TGG | - | chr4_4:12799865-12799884 | Msa0670350:intron | 40.0% |
| AAGATTGTTGACACATTCCC+TGG | - | chr4_4:12799910-12799929 | Msa0670350:CDS | 40.0% | |
| ATGACGATGAAGTCAGGAAT+TGG | - | chr4_4:12800385-12800404 | Msa0670350:intron | 40.0% | |
| GAAGTCAGGAATTGGATATC+TGG | - | chr4_4:12800393-12800412 | Msa0670350:intron | 40.0% | |
| ATCTTTGGTTGCTCGAAAGT+TGG | + | chr4_4:12800471-12800490 | None:intergenic | 40.0% | |
| TATTGTTTGGATGCAGGACA+AGG | - | chr4_4:12800758-12800777 | Msa0670350:intron | 40.0% | |
| ! | GGATCATAGTTTTCTGCAGA+AGG | + | chr4_4:12800827-12800846 | None:intergenic | 40.0% |
| GATAGAAAGAGAGAGGTGAG+AGG | + | chr4_4:12797395-12797414 | None:intergenic | 45.0% | |
| GAGCTGAGTTCCAAAGTGAT+TGG | + | chr4_4:12797431-12797450 | None:intergenic | 45.0% | |
| GGATAGAGTTCAAATCCCCT+CGG | - | chr4_4:12797763-12797782 | Msa0670350:intron | 45.0% | |
| GATAGAGTTCAAATCCCCTC+GGG | - | chr4_4:12797764-12797783 | Msa0670350:intron | 45.0% | |
| ATAGAGTTCAAATCCCCTCG+GGG | - | chr4_4:12797765-12797784 | Msa0670350:intron | 45.0% | |
| ! | ATTTTACTACCATGCCCCGA+GGG | + | chr4_4:12797782-12797801 | None:intergenic | 45.0% |
| ! | TATTTTACTACCATGCCCCG+AGG | + | chr4_4:12797783-12797802 | None:intergenic | 45.0% |
| TCGCAGAACTCGCTTTCTTA+AGG | + | chr4_4:12798330-12798349 | None:intergenic | 45.0% | |
| TGAGGAAAAGCAGACCTCAA+AGG | - | chr4_4:12798408-12798427 | Msa0670350:intron | 45.0% | |
| GATATCCTGTTGGTCATCTG+AGG | + | chr4_4:12798461-12798480 | None:intergenic | 45.0% | |
| GACCAACAGGATATCACAAG+GGG | - | chr4_4:12798466-12798485 | Msa0670350:intron | 45.0% | |
| TTCCCCTTGTGATATCCTGT+TGG | + | chr4_4:12798471-12798490 | None:intergenic | 45.0% | |
| ACAGGATATCACAAGGGGAA+AGG | - | chr4_4:12798471-12798490 | Msa0670350:intron | 45.0% | |
| CAGGATATCACAAGGGGAAA+GGG | - | chr4_4:12798472-12798491 | Msa0670350:intron | 45.0% | |
| TATCACAAGGGGAAAGGGAA+AGG | - | chr4_4:12798477-12798496 | Msa0670350:intron | 45.0% | |
| CAGTGTCTTTCAAGCTCCAA+CGG | - | chr4_4:12798504-12798523 | Msa0670350:intron | 45.0% | |
| TTGAACTTACTGGCGAAGAC+CGG | + | chr4_4:12798578-12798597 | None:intergenic | 45.0% | |
| ! | CCTCTCATTTTGGGCATTTG+GGG | - | chr4_4:12799195-12799214 | Msa0670350:CDS | 45.0% |
| TGAGCTTGTCTTTGCCAAGA+TGG | - | chr4_4:12799248-12799267 | Msa0670350:CDS | 45.0% | |
| GAGCTTGTCTTTGCCAAGAT+GGG | - | chr4_4:12799249-12799268 | Msa0670350:CDS | 45.0% | |
| TCTTTGCCAAGATGGGAATC+AGG | - | chr4_4:12799256-12799275 | Msa0670350:CDS | 45.0% | |
| TCTCCGGCACTCATCATTAT+AGG | + | chr4_4:12799475-12799494 | None:intergenic | 45.0% | |
| !! | AATGATGAGTGCCGGAGAAT+TGG | - | chr4_4:12799477-12799496 | Msa0670350:intron | 45.0% |
| GAATTGGAAAGCGGAAATGC+AGG | - | chr4_4:12799493-12799512 | Msa0670350:intron | 45.0% | |
| ! | GAGAGCCTGCAAAGTTGATT+AGG | - | chr4_4:12799515-12799534 | Msa0670350:intron | 45.0% |
| GCGTCCGACATTATCAGAAA+AGG | - | chr4_4:12799553-12799572 | Msa0670350:intron | 45.0% | |
| AATGATCTTGATGCAGGAGC+AGG | - | chr4_4:12799598-12799617 | Msa0670350:intron | 45.0% | |
| TGAGGGTTGCATTTACCATC+TGG | + | chr4_4:12799660-12799679 | None:intergenic | 45.0% | |
| GGTTGTCAGCAATGTTCATG+AGG | + | chr4_4:12799678-12799697 | None:intergenic | 45.0% | |
| CGGGAAGTTGAACATTGGTA+GGG | + | chr4_4:12799699-12799718 | None:intergenic | 45.0% | |
| CCTACCAATGTTCAACTTCC+CGG | - | chr4_4:12799697-12799716 | Msa0670350:intron | 45.0% | |
| CATACCGGGAAGTTGAACAT+TGG | + | chr4_4:12799704-12799723 | None:intergenic | 45.0% | |
| !! | GATAGAGTTGGTGTCTGTCA+AGG | - | chr4_4:12799847-12799866 | Msa0670350:intron | 45.0% |
| ACATTCCCTGGACAGTCAAT+TGG | - | chr4_4:12799922-12799941 | Msa0670350:CDS | 45.0% | |
| GCTTACCAATTGACTGTCCA+GGG | + | chr4_4:12799930-12799949 | None:intergenic | 45.0% | |
| GAGTGTATGACGATGAAGTC+AGG | - | chr4_4:12800379-12800398 | Msa0670350:intron | 45.0% | |
| !! | TTGGATATCTGGTATCGGTG+TGG | - | chr4_4:12800404-12800423 | Msa0670350:intron | 45.0% |
| TTTGGTTGCTCGAAAGTTGG+AGG | + | chr4_4:12800468-12800487 | None:intergenic | 45.0% | |
| AGCTGACAAATACCTCAGTG+AGG | - | chr4_4:12800563-12800582 | Msa0670350:intron | 45.0% | |
| AGTTATTGTCAAGACCGACG+CGG | + | chr4_4:12800714-12800733 | None:intergenic | 45.0% | |
| CGTCGGTCTTGACAATAACT+TGG | - | chr4_4:12800714-12800733 | Msa0670350:intron | 45.0% | |
| TGGAGCCATTAACATGGCAC+AGG | - | chr4_4:12797541-12797560 | Msa0670350:three_prime_UTR | 50.0% | |
| AGTTTGGCCATGCAACCTCA+AGG | - | chr4_4:12797741-12797760 | Msa0670350:intron | 50.0% | |
| GTTTGGCCATGCAACCTCAA+GGG | - | chr4_4:12797742-12797761 | Msa0670350:intron | 50.0% | |
| CTCTATCCCTTGAGGTTGCA+TGG | + | chr4_4:12797751-12797770 | None:intergenic | 50.0% | |
| ! | TTTTACTACCATGCCCCGAG+GGG | + | chr4_4:12797781-12797800 | None:intergenic | 50.0% |
| TCCAGCCAGAAGAGTTTGTC+TGG | - | chr4_4:12798352-12798371 | Msa0670350:intron | 50.0% | |
| ACCAGACAAACTCTTCTGGC+TGG | + | chr4_4:12798356-12798375 | None:intergenic | 50.0% | |
| AGCAGACCTCAAAGGACAGA+TGG | - | chr4_4:12798416-12798435 | Msa0670350:intron | 50.0% | |
| GCAGACCTCAAAGGACAGAT+GGG | - | chr4_4:12798417-12798436 | Msa0670350:intron | 50.0% | |
| TGACACCTCAGATGACCAAC+AGG | - | chr4_4:12798453-12798472 | Msa0670350:intron | 50.0% | |
| TTTCAAGCTCCAACGGATGC+TGG | - | chr4_4:12798511-12798530 | Msa0670350:CDS | 50.0% | |
| TAGTGAGTTCCAGCATCCGT+TGG | + | chr4_4:12798523-12798542 | None:intergenic | 50.0% | |
| CCCCAAATGCCCAAAATGAG+AGG | + | chr4_4:12799198-12799217 | None:intergenic | 50.0% | |
| ! | CTCATTTTGGGCATTTGGGG+AGG | - | chr4_4:12799198-12799217 | Msa0670350:CDS | 50.0% |
| ATTTGGGGAGGCAAAGGTCA+AGG | - | chr4_4:12799210-12799229 | Msa0670350:CDS | 50.0% | |
| ! | AGTGCCGGAGAATTGGAAAG+CGG | - | chr4_4:12799484-12799503 | Msa0670350:intron | 50.0% |
| TGATGCAGGAGCAGGTAGAA+TGG | - | chr4_4:12799606-12799625 | Msa0670350:intron | 50.0% | |
| GATGCAGGAGCAGGTAGAAT+GGG | - | chr4_4:12799607-12799626 | Msa0670350:intron | 50.0% | |
| CCGGGAAGTTGAACATTGGT+AGG | + | chr4_4:12799700-12799719 | None:intergenic | 50.0% | |
| AGTGACAATGATAGGGACGC+GGG | + | chr4_4:12799746-12799765 | None:intergenic | 50.0% | |
| CAGTGACAATGATAGGGACG+CGG | + | chr4_4:12799747-12799766 | None:intergenic | 50.0% | |
| CCAACTCTATCGTCACGAGT+AGG | + | chr4_4:12799838-12799857 | None:intergenic | 50.0% | |
| CCTACTCGTGACGATAGAGT+TGG | - | chr4_4:12799835-12799854 | Msa0670350:intron | 50.0% | |
| GGCTTACCAATTGACTGTCC+AGG | + | chr4_4:12799931-12799950 | None:intergenic | 50.0% | |
| !! | GGTATCGGTGTGGAGAGTAT+TGG | - | chr4_4:12800414-12800433 | Msa0670350:intron | 50.0% |
| GACGAACAAATATGCCGCGT+CGG | - | chr4_4:12800697-12800716 | Msa0670350:intron | 50.0% | |
| GTTCCTTTACCTGTCCCAGA+AGG | - | chr4_4:12800791-12800810 | Msa0670350:intron | 50.0% | |
| !! | CAACCTTCTGGGACAGGTAA+AGG | + | chr4_4:12800797-12800816 | None:intergenic | 50.0% |
| GCAACTTCCATCGTCACTTC+TGG | + | chr4_4:12800855-12800874 | None:intergenic | 50.0% | |
| ACCTCAAAGGACAGATGGGC+TGG | - | chr4_4:12798421-12798440 | Msa0670350:intron | 55.0% | |
| TCCAGCCCATCTGTCCTTTG+AGG | + | chr4_4:12798425-12798444 | None:intergenic | 55.0% | |
| CACAAGGGGAAAGGGAAAGG+TGG | - | chr4_4:12798480-12798499 | Msa0670350:intron | 55.0% | |
| TTGGGCATTTGGGGAGGCAA+AGG | - | chr4_4:12799204-12799223 | Msa0670350:CDS | 55.0% | |
| CGCGTGTGTGTGTAACGCAA+TGG | + | chr4_4:12799339-12799358 | None:intergenic | 55.0% | |
| !! | GATTAGGCAAAGGTACCGCG+AGG | - | chr4_4:12799531-12799550 | Msa0670350:intron | 55.0% |
| ! | TGATAATGTCGGACGCCTCG+CGG | + | chr4_4:12799549-12799568 | None:intergenic | 55.0% |
| CGCGTCCCTATCATTGTCAC+TGG | - | chr4_4:12799745-12799764 | Msa0670350:intron | 55.0% | |
| CAGGACAGATGGTGTCCCTA+AGG | - | chr4_4:12799876-12799895 | Msa0670350:CDS | 55.0% | |
| GTCATACACTCTCGCCCTCA+AGG | + | chr4_4:12800370-12800389 | None:intergenic | 55.0% | |
| TACCTCAGTGAGGCAGCTCT+TGG | - | chr4_4:12800573-12800592 | Msa0670350:intron | 55.0% | |
| AAGGGTCAGCGCAACCTTCT+GGG | + | chr4_4:12800808-12800827 | None:intergenic | 55.0% | |
| ! | CCATCGTCACTTCTGGCTGT+CGG | + | chr4_4:12800848-12800867 | None:intergenic | 55.0% |
| GTTCAAATCCCCTCGGGGCA+TGG | - | chr4_4:12797770-12797789 | Msa0670350:intron | 60.0% | |
| GCAGGAGCAGGTAGAATGGG+TGG | - | chr4_4:12799610-12799629 | Msa0670350:intron | 60.0% | |
| CTCCAAGAGCTGCCTCACTG+AGG | + | chr4_4:12800578-12800597 | None:intergenic | 60.0% | |
| !! | TCAGCGCAACCTTCTGGGAC+AGG | + | chr4_4:12800803-12800822 | None:intergenic | 60.0% |
| GAAGGGTCAGCGCAACCTTC+TGG | + | chr4_4:12800809-12800828 | None:intergenic | 60.0% | |
| CCGACAGCCAGAAGTGACGA+TGG | - | chr4_4:12800845-12800864 | Msa0670350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 12797228 | 12801225 | 12797228 | ID=Msa0670350;Name=Msa0670350 |
| chr4_4 | mRNA | 12797228 | 12801225 | 12797228 | ID=Msa0670350-mRNA-1;Parent=Msa0670350;Name=Msa0670350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=290|1|1|1|1|1|6|336|476 |
| chr4_4 | exon | 12797228 | 12797679 | 12797228 | ID=Msa0670350-mRNA-1:exon:3868;Parent=Msa0670350-mRNA-1 |
| chr4_4 | exon | 12797817 | 12798098 | 12797817 | ID=Msa0670350-mRNA-1:exon:3867;Parent=Msa0670350-mRNA-1 |
| chr4_4 | exon | 12798510 | 12798982 | 12798510 | ID=Msa0670350-mRNA-1:exon:3866;Parent=Msa0670350-mRNA-1 |
| chr4_4 | exon | 12799176 | 12799367 | 12799176 | ID=Msa0670350-mRNA-1:exon:3865;Parent=Msa0670350-mRNA-1 |
| chr4_4 | exon | 12799866 | 12800188 | 12799866 | ID=Msa0670350-mRNA-1:exon:3864;Parent=Msa0670350-mRNA-1 |
| chr4_4 | exon | 12800891 | 12801225 | 12800891 | ID=Msa0670350-mRNA-1:exon:3863;Parent=Msa0670350-mRNA-1 |
| chr4_4 | five_prime_UTR | 12800936 | 12801225 | 12800936 | ID=Msa0670350-mRNA-1:five_prime_utr;Parent=Msa0670350-mRNA-1 |
| chr4_4 | CDS | 12800891 | 12800935 | 12800891 | ID=Msa0670350-mRNA-1:cds;Parent=Msa0670350-mRNA-1 |
| chr4_4 | CDS | 12799866 | 12800188 | 12799866 | ID=Msa0670350-mRNA-1:cds;Parent=Msa0670350-mRNA-1 |
| chr4_4 | CDS | 12799176 | 12799367 | 12799176 | ID=Msa0670350-mRNA-1:cds;Parent=Msa0670350-mRNA-1 |
| chr4_4 | CDS | 12798510 | 12798982 | 12798510 | ID=Msa0670350-mRNA-1:cds;Parent=Msa0670350-mRNA-1 |
| chr4_4 | CDS | 12797817 | 12798098 | 12797817 | ID=Msa0670350-mRNA-1:cds;Parent=Msa0670350-mRNA-1 |
| chr4_4 | CDS | 12797564 | 12797679 | 12797564 | ID=Msa0670350-mRNA-1:cds;Parent=Msa0670350-mRNA-1 |
| chr4_4 | three_prime_UTR | 12797228 | 12797563 | 12797228 | ID=Msa0670350-mRNA-1:three_prime_utr;Parent=Msa0670350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
