Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591480 | XP_003604901.1 | 98.950 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 0.0 | 978 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591480 | sp|Q7X9A0|RCA1_LARTR | 81.289 | 481 | 80 | 6 | 1 | 476 | 1 | 476 | 0.0 | 799 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056370 | Msa0591480 | 0.800525 | 1.383601e-48 | -8.615850e-47 |
| Msa0076590 | Msa0591480 | 0.802216 | 6.231634e-49 | -8.615850e-47 |
| Msa0094170 | Msa0591480 | 0.801936 | 7.117953e-49 | -8.615850e-47 |
| Msa0122930 | Msa0591480 | 0.803599 | 3.227632e-49 | -8.615850e-47 |
| Msa0371010 | Msa0591480 | 0.800500 | 1.399639e-48 | -8.615850e-47 |
| Msa0450920 | Msa0591480 | 0.802240 | 6.163228e-49 | -8.615850e-47 |
| Msa0260580 | Msa0591480 | 0.806128 | 9.562431e-50 | -8.615850e-47 |
| Msa0260640 | Msa0591480 | 0.802073 | 6.668203e-49 | -8.615850e-47 |
| Msa0291490 | Msa0591480 | 0.817349 | 3.453613e-52 | -8.615850e-47 |
| Msa0329360 | Msa0591480 | 0.817574 | 3.072594e-52 | -8.615850e-47 |
| Msa0517820 | Msa0591480 | 0.804016 | 2.644282e-49 | -8.615850e-47 |
| Msa0585810 | Msa0591480 | 0.800353 | 1.499980e-48 | -8.615850e-47 |
| Msa0591480 | Msa0606520 | 0.843366 | 1.464588e-58 | -8.615850e-47 |
| Msa0591480 | Msa0625820 | 0.804898 | 1.732055e-49 | -8.615850e-47 |
| Msa0591480 | Msa0631680 | 0.831365 | 1.740101e-55 | -8.615850e-47 |
| Msa0591480 | Msa0670350 | 0.872586 | 2.837551e-67 | -8.615850e-47 |
| Msa0591480 | Msa0686730 | 0.812373 | 4.381299e-51 | -8.615850e-47 |
| Msa0591480 | Msa0745270 | 0.805784 | 1.129115e-49 | -8.615850e-47 |
| Msa0591480 | Msa0967890 | 0.800584 | 1.345687e-48 | -8.615850e-47 |
| Msa0591480 | Msa1038530 | 0.805492 | 1.300770e-49 | -8.615850e-47 |
| Msa0591480 | Msa1066830 | 0.801254 | 9.822098e-49 | -8.615850e-47 |
| Msa0591480 | Msa1066930 | 0.804871 | 1.754411e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591480 | MtrunA17_Chr4g0009431 | 98.950 | 476 | 5 | 0 | 1 | 476 | 1 | 476 | 0.0 | 978 |
| Msa0591480 | MtrunA17_Chr5g0435631 | 81.513 | 476 | 87 | 1 | 1 | 476 | 1 | 475 | 0.0 | 825 |
| Msa0591480 | MtrunA17_Chr3g0112121 | 82.192 | 438 | 75 | 3 | 1 | 437 | 1 | 436 | 0.0 | 748 |
| Msa0591480 | MtrunA17_Chr2g0334101 | 54.110 | 292 | 127 | 6 | 134 | 419 | 123 | 413 | 2.06e-109 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591480 | AT2G39730.1 | 78.826 | 477 | 97 | 2 | 1 | 476 | 1 | 474 | 0.0 | 784 |
| Msa0591480 | AT2G39730.2 | 78.076 | 447 | 94 | 2 | 1 | 446 | 1 | 444 | 0.0 | 726 |
| Msa0591480 | AT2G39730.3 | 78.912 | 441 | 89 | 2 | 1 | 440 | 1 | 438 | 0.0 | 724 |
| Msa0591480 | AT1G73110.2 | 51.724 | 319 | 145 | 7 | 107 | 419 | 15 | 330 | 1.29e-110 | 331 |
| Msa0591480 | AT1G73110.1 | 52.564 | 312 | 139 | 7 | 114 | 419 | 119 | 427 | 2.68e-109 | 331 |
Find 142 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATATTGCACCTGCATTTA+TGG | 0.088800 | 4_2:-15787901 | Msa0591480:CDS |
| TATTAAGATTCCTCTCATTT+TGG | 0.116167 | 4_2:-15787832 | Msa0591480:CDS |
| GAGTTTGTCTGGTAACTTTA+AGG | 0.180254 | 4_2:-15788676 | Msa0591480:CDS |
| TCTTCACATTCTCTTGTTCT+TGG | 0.192672 | 4_2:+15786530 | None:intergenic |
| GCCATTATATTATATGTTAT+TGG | 0.200288 | 4_2:+15789465 | None:intergenic |
| ATGAGAGGAATCTTAATATT+TGG | 0.205578 | 4_2:+15787837 | None:intergenic |
| TCTCCGGCACTCATCATTAT+AGG | 0.240969 | 4_2:+15787570 | None:intergenic |
| TTCTACCTGTGCCATGTTAA+TGG | 0.253796 | 4_2:+15789419 | None:intergenic |
| TGCATTAATCTCACCACTTT+AGG | 0.260377 | 4_2:-15786069 | Msa0591480:three_prime_UTR |
| CAATCTTACCAAACTTGTTT+TGG | 0.270482 | 4_2:-15789491 | Msa0591480:five_prime_UTR |
| GTCTGGTAACTTTAAGGTTT+CGG | 0.299605 | 4_2:-15788670 | Msa0591480:CDS |
| TTGCTTTATATAACTTGTTC+AGG | 0.310605 | 4_2:+15785867 | None:intergenic |
| AGCTCTAATGAACACAAATT+TGG | 0.318750 | 4_2:+15785926 | None:intergenic |
| TCCAATAACATATAATATAA+TGG | 0.324636 | 4_2:-15789466 | Msa0591480:exon |
| TGATATGTTCAGGTACAATA+TGG | 0.328301 | 4_2:-15787943 | Msa0591480:intron |
| ATTGGAAACCAAAACAAGTT+TGG | 0.330403 | 4_2:+15789483 | None:intergenic |
| AAGGGTCAGCGCAACCTTCT+TGG | 0.331258 | 4_2:+15786253 | None:intergenic |
| CTTTGCCTAATCAACTTTGC+AGG | 0.332302 | 4_2:+15787522 | None:intergenic |
| AATGCACCTTACATAAAATA+TGG | 0.337542 | 4_2:+15786086 | None:intergenic |
| AGCTTGTCAATAGTCATCTT+TGG | 0.340251 | 4_2:+15786577 | None:intergenic |
| CTTAAGTGAGTACATAAATA+TGG | 0.341458 | 4_2:-15786162 | Msa0591480:three_prime_UTR |
| TCTTTGCCAAGATGGGAATA+AGG | 0.350452 | 4_2:-15787761 | Msa0591480:intron |
| GCAACTTCCATCGTCACTTC+TGG | 0.351528 | 4_2:+15786206 | None:intergenic |
| AATGATGAGTGCCGGAGAAT+TGG | 0.354739 | 4_2:-15787565 | Msa0591480:CDS |
| ATACGTCCATCACGAATTAA+AGG | 0.360045 | 4_2:+15787249 | None:intergenic |
| ATCAAGACTGGAAACTTCTA+TGG | 0.360535 | 4_2:-15786445 | Msa0591480:intron |
| TCCAGCCCATCTGTCCTTTG+AGG | 0.369839 | 4_2:+15788617 | None:intergenic |
| CTCTTCTTTGTTGTACATAC+CGG | 0.377301 | 4_2:+15787326 | None:intergenic |
| TTTATTGTATTATTATTGTT+AGG | 0.377820 | 4_2:+15789725 | None:intergenic |
| GGGCGCCTACTCGTGATGAT+AGG | 0.379460 | 4_2:-15787212 | Msa0591480:CDS |
| TCGCAGAACTAGCTTTCTTA+AGG | 0.379560 | 4_2:+15788712 | None:intergenic |
| GATAGAAAGAGAGAGGTGAT+AGG | 0.385578 | 4_2:+15789567 | None:intergenic |
| CTCCGGCACTCATCATTATA+GGG | 0.391535 | 4_2:+15787571 | None:intergenic |
| AGTTACCAGACAAACTCTTC+TGG | 0.399477 | 4_2:+15788682 | None:intergenic |
| TCATTTCCAGTGACGATGAT+AGG | 0.406761 | 4_2:+15787291 | None:intergenic |
| CCTACCAATGTTCAACTTCC+CGG | 0.413313 | 4_2:-15787345 | Msa0591480:CDS |
| GAGCTGAGTTCCAAAGTGAT+TGG | 0.413769 | 4_2:+15789531 | None:intergenic |
| AAGATTGTCGACACATTCCC+TGG | 0.416886 | 4_2:-15787132 | Msa0591480:CDS |
| ATCTTTGGTTGCTCAAAAGT+TGG | 0.417648 | 4_2:+15786592 | None:intergenic |
| GCAACTTCTGTGACAATTGT+TGG | 0.420971 | 4_2:-15789444 | Msa0591480:CDS |
| TGAGGGTTGCATTTACCATC+TGG | 0.421559 | 4_2:+15787385 | None:intergenic |
| TTTCAAGCTCCAACGGATGC+TGG | 0.424875 | 4_2:-15788528 | Msa0591480:CDS |
| GAGAGCCTGCAAAGTTGATT+AGG | 0.432564 | 4_2:-15787527 | Msa0591480:CDS |
| GAAGTCAGGAATTGGATATC+TGG | 0.433568 | 4_2:-15786667 | Msa0591480:CDS |
| ATGACGATGAAGTCAGGAAT+TGG | 0.439434 | 4_2:-15786675 | Msa0591480:CDS |
| TCCAGCCAGAAGAGTTTGTC+TGG | 0.441643 | 4_2:-15788687 | Msa0591480:CDS |
| AATATGGACAACACAATAGA+TGG | 0.441782 | 4_2:-15787927 | Msa0591480:CDS |
| ATCTTGACAATGTCATCCTT+AGG | 0.455344 | 4_2:+15787150 | None:intergenic |
| GGCTTACCAATTGACTGTCC+AGG | 0.457458 | 4_2:+15787114 | None:intergenic |
| TTCCCCTTGTGATATCCTGT+TGG | 0.457655 | 4_2:+15788571 | None:intergenic |
| TACCTCAGTCAGGCAGCTCT+TGG | 0.463568 | 4_2:-15786487 | Msa0591480:CDS |
| GATTGCTGAATATTAAGAAA+TGG | 0.465655 | 4_2:+15789509 | None:intergenic |
| ATTTCCACTTTCCAATTCTC+CGG | 0.468242 | 4_2:+15787554 | None:intergenic |
| ACATTCCCTGGACAGTCAAT+TGG | 0.470564 | 4_2:-15787120 | Msa0591480:intron |
| TTGTTATTGGTGGTGTCCTA+TGG | 0.477182 | 4_2:-15786035 | Msa0591480:three_prime_UTR |
| CAGGATATCACAAGGGGAAA+GGG | 0.479596 | 4_2:-15788567 | Msa0591480:CDS |
| ACCTCAAAGGACAGATGGGC+TGG | 0.482103 | 4_2:-15788618 | Msa0591480:CDS |
| TTGGGCATTTGGGGAGGCAA+AGG | 0.485012 | 4_2:-15787813 | Msa0591480:CDS |
| GAGTGTATGACGATGAAGTC+AGG | 0.487351 | 4_2:-15786681 | Msa0591480:CDS |
| CAACCTTCTTGGACAGGTAA+AGG | 0.489973 | 4_2:+15786264 | None:intergenic |
| TCAACTCAATCCAATCACTT+TGG | 0.491749 | 4_2:-15789541 | Msa0591480:five_prime_UTR |
| GCGTCCGACATTATCAGAAA+AGG | 0.491800 | 4_2:-15787489 | Msa0591480:CDS |
| TTCATCAATGATCTTGATGC+AGG | 0.493471 | 4_2:-15787450 | Msa0591480:CDS |
| TGACACCTCAGATGACCAAC+AGG | 0.496044 | 4_2:-15788586 | Msa0591480:CDS |
| CCGGGAAGTTGAACATTGGT+AGG | 0.497705 | 4_2:+15787345 | None:intergenic |
| TTTGGTTGCTCAAAAGTTGG+AGG | 0.500397 | 4_2:+15786595 | None:intergenic |
| CATCTTATAGAAAGCAATGT+TGG | 0.509991 | 4_2:-15785988 | Msa0591480:three_prime_UTR |
| ATTGACAAGCTACTAGAATA+CGG | 0.510760 | 4_2:-15786565 | Msa0591480:CDS |
| GGCGCCTACTCGTGATGATA+GGG | 0.511511 | 4_2:-15787211 | Msa0591480:CDS |
| TTGAGTTGATAGAAAGAGAG+AGG | 0.512962 | 4_2:+15789560 | None:intergenic |
| AGCAGACCTCAAAGGACAGA+TGG | 0.514834 | 4_2:-15788623 | Msa0591480:CDS |
| CGTGTTCCTATCATCGTCAC+TGG | 0.515049 | 4_2:-15787297 | Msa0591480:CDS |
| TCCTATGATTATATCAGTAC+CGG | 0.515211 | 4_2:-15788483 | Msa0591480:CDS |
| TCTTGACAATGTCATCCTTA+GGG | 0.521614 | 4_2:+15787151 | None:intergenic |
| CAGGACAGATGGTGTCCCTA+AGG | 0.522125 | 4_2:-15787166 | Msa0591480:CDS |
| AGGAATTGGATATCTGGTAT+TGG | 0.523666 | 4_2:-15786661 | Msa0591480:CDS |
| TAAAGACAATTTCATTTGTG+TGG | 0.525282 | 4_2:-15789706 | Msa0591480:five_prime_UTR |
| TTTAATTCGTGATGGACGTA+TGG | 0.525860 | 4_2:-15787247 | Msa0591480:CDS |
| AATGACGATGCTATCAAGAC+TGG | 0.527194 | 4_2:-15786457 | Msa0591480:CDS |
| ACAGGATATCACAAGGGGAA+AGG | 0.531778 | 4_2:-15788568 | Msa0591480:CDS |
| GTTCCTTTACCTGTCCAAGA+AGG | 0.532646 | 4_2:-15786267 | Msa0591480:CDS |
| ACCGGTACTGATATAATCAT+AGG | 0.533522 | 4_2:+15788482 | None:intergenic |
| GAATTGGAAAGTGGAAATGC+AGG | 0.534950 | 4_2:-15787549 | Msa0591480:CDS |
| AAGACTTGTGAATTCAAAAG+AGG | 0.535398 | 4_2:-15786620 | Msa0591480:CDS |
| TGATAATGTCGGACGCCTCA+CGG | 0.537380 | 4_2:+15787496 | None:intergenic |
| AATGATCTTGATGCAGGAGC+TGG | 0.538362 | 4_2:-15787444 | Msa0591480:CDS |
| AGCTGACAAATACCTCAGTC+AGG | 0.538759 | 4_2:-15786497 | Msa0591480:CDS |
| TATCACAAGGGGAAAGGGAA+AGG | 0.540011 | 4_2:-15788562 | Msa0591480:CDS |
| TGAGCTTGTCTTTGCCAAGA+TGG | 0.545502 | 4_2:-15787769 | Msa0591480:CDS |
| GATGCAGGAGCTGGTAGAAT+GGG | 0.546512 | 4_2:-15787435 | Msa0591480:CDS |
| TCAGCGCAACCTTCTTGGAC+AGG | 0.548212 | 4_2:+15786258 | None:intergenic |
| TATGCTCCTTTAATTCGTGA+TGG | 0.548955 | 4_2:-15787255 | Msa0591480:CDS |
| GGTATTGGTGTGGAGAGTAT+TGG | 0.554129 | 4_2:-15786646 | Msa0591480:CDS |
| AATTCTCAAAACTCAACCAT+AGG | 0.555746 | 4_2:+15786019 | None:intergenic |
| GCTTACCAATTGACTGTCCA+GGG | 0.556345 | 4_2:+15787115 | None:intergenic |
| ACCAGACAAACTCTTCTGGC+TGG | 0.558437 | 4_2:+15788686 | None:intergenic |
| CCATCGTCACTTCTGGCTGT+CGG | 0.561082 | 4_2:+15786213 | None:intergenic |
| ATTTGGGGAGGCAAAGGTCA+AGG | 0.561672 | 4_2:-15787807 | Msa0591480:CDS |
| CAGTGTCTTTCAAGCTCCAA+CGG | 0.565417 | 4_2:-15788535 | Msa0591480:CDS |
| ATGAACTTACTGGCGAAGAC+CGG | 0.570181 | 4_2:+15788464 | None:intergenic |
| ACAAGCTTGTCCATAAATGC+AGG | 0.573184 | 4_2:+15787891 | None:intergenic |
| TGATGCAGGAGCTGGTAGAA+TGG | 0.573216 | 4_2:-15787436 | Msa0591480:CDS |
| AAGAACAAGAGAATGTGAAG+AGG | 0.574498 | 4_2:-15786528 | Msa0591480:CDS |
| TGGAGCCATTAACATGGCAC+AGG | 0.576795 | 4_2:-15789424 | Msa0591480:intron |
| TCTTCTTTGTTGTACATACC+GGG | 0.579180 | 4_2:+15787327 | None:intergenic |
| GGTTGTCAGCAATGTTCATG+AGG | 0.579374 | 4_2:+15787367 | None:intergenic |
| ACGTGATTGTGCAAAATGAA+AGG | 0.585936 | 4_2:+15785951 | None:intergenic |
| AGCCCTATAATGATGAGTGC+CGG | 0.586108 | 4_2:-15787573 | Msa0591480:CDS |
| ACTAGAATACGGAAATATGT+TGG | 0.586255 | 4_2:-15786554 | Msa0591480:CDS |
| CGGGAAGTTGAACATTGGTA+GGG | 0.586332 | 4_2:+15787346 | None:intergenic |
| CCCCAAATGCCCAAAATGAG+AGG | 0.592582 | 4_2:+15787822 | None:intergenic |
| GCAGACCTCAAAGGACAGAT+GGG | 0.592933 | 4_2:-15788622 | Msa0591480:CDS |
| TTGGATATCTGGTATTGGTG+TGG | 0.595454 | 4_2:-15786656 | Msa0591480:CDS |
| GAGCTTGTCTTTGCCAAGAT+GGG | 0.595810 | 4_2:-15787768 | Msa0591480:CDS |
| CACAAGGGGAAAGGGAAAGG+TGG | 0.605010 | 4_2:-15788559 | Msa0591480:CDS |
| GTTGTCAGCAATGTTCATGA+GGG | 0.605287 | 4_2:+15787368 | None:intergenic |
| AGACTTGTGAATTCAAAAGA+GGG | 0.610232 | 4_2:-15786619 | Msa0591480:CDS |
| TAGTGAGTTCCAGCATCCGT+TGG | 0.612756 | 4_2:+15788519 | None:intergenic |
| AGAACAAGAGAATGTGAAGA+GGG | 0.613350 | 4_2:-15786527 | Msa0591480:CDS |
| AATTGTTGGAGCCATTAACA+TGG | 0.617506 | 4_2:-15789430 | Msa0591480:CDS |
| TGAGGAAAAGCAGACCTCAA+AGG | 0.617972 | 4_2:-15788631 | Msa0591480:CDS |
| GATATCCTGTTGGTCATCTG+AGG | 0.618471 | 4_2:+15788581 | None:intergenic |
| AAATTGAACGGCTCTAGCAG+TGG | 0.620869 | 4_2:-15788771 | Msa0591480:CDS |
| AGTGCCGGAGAATTGGAAAG+TGG | 0.623122 | 4_2:-15787558 | Msa0591480:CDS |
| CTGCAAAGTTGATTAGGCAA+AGG | 0.623429 | 4_2:-15787521 | Msa0591480:CDS |
| TGTATGCAGTTGAAATTGAA+CGG | 0.623551 | 4_2:-15788783 | Msa0591480:intron |
| CCTACTCGTGATGATAGGGT+TGG | 0.628308 | 4_2:-15787207 | Msa0591480:CDS |
| CTCCAAGAGCTGCCTGACTG+AGG | 0.628443 | 4_2:+15786485 | None:intergenic |
| CCGACAGCCAGAAGTGACGA+TGG | 0.630990 | 4_2:-15786213 | Msa0591480:CDS |
| GACCAACAGGATATCACAAG+GGG | 0.645088 | 4_2:-15788573 | Msa0591480:CDS |
| CAGTGACGATGATAGGAACA+CGG | 0.649609 | 4_2:+15787298 | None:intergenic |
| CATACCGGGAAGTTGAACAT+TGG | 0.657559 | 4_2:+15787341 | None:intergenic |
| TGATTGTGCAAAATGAAAGG+AGG | 0.666026 | 4_2:+15785954 | None:intergenic |
| ATACACAGTCAATAACCAGA+TGG | 0.667649 | 4_2:-15787400 | Msa0591480:CDS |
| AGTGACGATGATAGGAACAC+GGG | 0.670958 | 4_2:+15787299 | None:intergenic |
| ATGACCAACAGGATATCACA+AGG | 0.671981 | 4_2:-15788575 | Msa0591480:CDS |
| GCAGGAGCTGGTAGAATGGG+TGG | 0.672116 | 4_2:-15787432 | Msa0591480:CDS |
| CCAACCCTATCATCACGAGT+AGG | 0.676755 | 4_2:+15787207 | None:intergenic |
| GATAGGGTTGGTGTATGTCA+AGG | 0.678055 | 4_2:-15787195 | Msa0591480:CDS |
| TGACCAACAGGATATCACAA+GGG | 0.701639 | 4_2:-15788574 | Msa0591480:CDS |
| TGAAGAAACTTGAAGCTGAG+TGG | 0.723765 | 4_2:+15789607 | None:intergenic |
| GATTAGGCAAAGGTACCGTG+AGG | 0.742836 | 4_2:-15787511 | Msa0591480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATATACATAAAAAAAAAT+TGG | - | chr4_2:15786294-15786313 | Msa0591480:intron | 10.0% |
| !!! | TTAAATTTTGAATTATTTTG+AGG | - | chr4_2:15787486-15787505 | Msa0591480:CDS | 10.0% |
| !! | TCCAATAACATATAATATAA+TGG | - | chr4_2:15786113-15786132 | Msa0591480:three_prime_UTR | 15.0% |
| !!! | TACAGAAAATTTTATCAAAA+GGG | + | chr4_2:15787436-15787455 | None:intergenic | 15.0% |
| !! | CATGGTTAATAATAAATATA+AGG | + | chr4_2:15788793-15788812 | None:intergenic | 15.0% |
| !!! | TTTTCTGTTATTATCTTAAA+AGG | - | chr4_2:15789170-15789189 | Msa0591480:intron | 15.0% |
| !! | ACAAAAAAGAAAAGAATCTA+TGG | + | chr4_2:15785923-15785942 | None:intergenic | 20.0% |
| !! | GCCATTATATTATATGTTAT+TGG | + | chr4_2:15786117-15786136 | None:intergenic | 20.0% |
| !! | ACAAATAGATACATAATAGA+AGG | + | chr4_2:15786441-15786460 | None:intergenic | 20.0% |
| !! | AATCTTTGTTAACTGAAATA+AGG | + | chr4_2:15787145-15787164 | None:intergenic | 20.0% |
| !! | TACATAAAATGATAACACTT+CGG | + | chr4_2:15787188-15787207 | None:intergenic | 20.0% |
| !! | ATGCTAATTTACTTATTCTT+AGG | - | chr4_2:15787216-15787235 | Msa0591480:CDS | 20.0% |
| !! | TAGTAGATATTTGTATCAAT+TGG | + | chr4_2:15787306-15787325 | None:intergenic | 20.0% |
| !!! | CTACAGAAAATTTTATCAAA+AGG | + | chr4_2:15787437-15787456 | None:intergenic | 20.0% |
| !!! | TTCCTGTATTATTTGATTTA+TGG | - | chr4_2:15787462-15787481 | Msa0591480:CDS | 20.0% |
| !! | TGATATTCTAGGTTATAATA+TGG | - | chr4_2:15787517-15787536 | Msa0591480:CDS | 20.0% |
| !!! | CATTTCTTTGTAGATTTTTT+TGG | - | chr4_2:15788861-15788880 | Msa0591480:intron | 20.0% |
| !! | GATAATAACAGAAAAATCAA+AGG | + | chr4_2:15789165-15789184 | None:intergenic | 20.0% |
| !! | AAAAATTATACAACCTAAAG+TGG | + | chr4_2:15789526-15789545 | None:intergenic | 20.0% |
| !!! | GGTTGTATAATTTTTGTTAT+TGG | - | chr4_2:15789531-15789550 | Msa0591480:five_prime_UTR | 20.0% |
| !!! | TGTATAATTTTTGTTATTGG+TGG | - | chr4_2:15789534-15789553 | Msa0591480:five_prime_UTR | 20.0% |
| ! | TAAAGACAATTTCATTTGTG+TGG | - | chr4_2:15785873-15785892 | Msa0591480:three_prime_UTR | 25.0% |
| ! | GATTGCTGAATATTAAGAAA+TGG | + | chr4_2:15786073-15786092 | None:intergenic | 25.0% |
| ! | CTATTTGTATGAGTGTTAAT+AGG | - | chr4_2:15786453-15786472 | Msa0591480:CDS | 25.0% |
| !! | GTTCCAATTTTCATTCAATT+TGG | - | chr4_2:15786733-15786752 | Msa0591480:intron | 25.0% |
| ! | ACTCCAAATTGAATGAAAAT+TGG | + | chr4_2:15786739-15786758 | None:intergenic | 25.0% |
| !! | TTCATTCAATTTGGAGTTTA+TGG | - | chr4_2:15786742-15786761 | Msa0591480:intron | 25.0% |
| ! | AAAAATGCTGAATTTGTCAT+AGG | + | chr4_2:15786838-15786857 | None:intergenic | 25.0% |
| !! | ATGACAAATTCAGCATTTTT+CGG | - | chr4_2:15786838-15786857 | Msa0591480:intron | 25.0% |
| !! | GTGTTATCATTTTATGTACT+TGG | - | chr4_2:15787190-15787209 | Msa0591480:CDS | 25.0% |
| ! | TATCAGTATCTTACGATATA+TGG | - | chr4_2:15787247-15787266 | Msa0591480:CDS | 25.0% |
| ! | AGCCATAAATCAAATAATAC+AGG | + | chr4_2:15787467-15787486 | None:intergenic | 25.0% |
| !!! | ATTTTGAATTATTTTGAGGC+TGG | - | chr4_2:15787490-15787509 | Msa0591480:CDS | 25.0% |
| ! | ATGAGAGGAATCTTAATATT+TGG | + | chr4_2:15787745-15787764 | None:intergenic | 25.0% |
| !! | TATTAAGATTCCTCTCATTT+TGG | - | chr4_2:15787747-15787766 | Msa0591480:intron | 25.0% |
| !! | ATTAAGATTCCTCTCATTTT+GGG | - | chr4_2:15787748-15787767 | Msa0591480:intron | 25.0% |
| ! | AAGGTAAAAAGAAATTTGAC+AGG | - | chr4_2:15787837-15787856 | Msa0591480:CDS | 25.0% |
| ! | ACGTATGGAAAAATTCTATT+GGG | - | chr4_2:15788347-15788366 | Msa0591480:intron | 25.0% |
| !!! | AGTCAAAATTTCTAGTTACT+AGG | - | chr4_2:15788508-15788527 | Msa0591480:CDS | 25.0% |
| !!! | GTCAAAATTTCTAGTTACTA+GGG | - | chr4_2:15788509-15788528 | Msa0591480:CDS | 25.0% |
| ! | AAGAATGTTATCTTACTGTT+TGG | - | chr4_2:15789266-15789285 | Msa0591480:intron | 25.0% |
| ! | CTTAAGTGAGTACATAAATA+TGG | - | chr4_2:15789417-15789436 | Msa0591480:intron | 25.0% |
| !! | CATTCACCATATTTTATGTA+AGG | - | chr4_2:15789487-15789506 | Msa0591480:five_prime_UTR | 25.0% |
| ! | AATGCACCTTACATAAAATA+TGG | + | chr4_2:15789496-15789515 | None:intergenic | 25.0% |
| !!! | TTGCTTTATATAACTTGTTC+AGG | + | chr4_2:15789715-15789734 | None:intergenic | 25.0% |
| !! | CAATCTTACCAAACTTGTTT+TGG | - | chr4_2:15786088-15786107 | Msa0591480:three_prime_UTR | 30.0% |
| ATTGGAAACCAAAACAAGTT+TGG | + | chr4_2:15786099-15786118 | None:intergenic | 30.0% | |
| ATGCTTCTCTTAACAAACTT+TGG | - | chr4_2:15786182-15786201 | Msa0591480:exon | 30.0% | |
| CTAGATTAGCAATAAGAGTT+TGG | - | chr4_2:15786339-15786358 | Msa0591480:intron | 30.0% | |
| AGGTGCATCATGTATATTAA+CGG | + | chr4_2:15786421-15786440 | None:intergenic | 30.0% | |
| ! | ATTCCAATCTTTTGATATCG+TGG | - | chr4_2:15786529-15786548 | Msa0591480:CDS | 30.0% |
| AGTCATGGTTTCAAAAGAAA+AGG | + | chr4_2:15786657-15786676 | None:intergenic | 30.0% | |
| AATGAAAATTGGAACAGACT+CGG | + | chr4_2:15786728-15786747 | None:intergenic | 30.0% | |
| TTGGAGTTTATGGTTAATTG+AGG | - | chr4_2:15786752-15786771 | Msa0591480:intron | 30.0% | |
| GGTTAATTGAGGACTAATAA+CGG | - | chr4_2:15786763-15786782 | Msa0591480:intron | 30.0% | |
| TGTATGCAGTTGAAATTGAA+CGG | - | chr4_2:15786796-15786815 | Msa0591480:intron | 30.0% | |
| GGCAAAAATTGACTATAATG+AGG | - | chr4_2:15786930-15786949 | Msa0591480:intron | 30.0% | |
| TCCTATGATTATATCAGTAC+CGG | - | chr4_2:15787096-15787115 | Msa0591480:intron | 30.0% | |
| ATAAGGTGAAATGAACTTAC+TGG | + | chr4_2:15787128-15787147 | None:intergenic | 30.0% | |
| TTTACTTATTCTTAGGCACA+TGG | - | chr4_2:15787223-15787242 | Msa0591480:CDS | 30.0% | |
| !! | TGACATTTTTAAGCAAGAAC+AGG | + | chr4_2:15787551-15787570 | None:intergenic | 30.0% |
| !! | TCTAATTGATAGTGTGTCTT+AGG | - | chr4_2:15787574-15787593 | Msa0591480:CDS | 30.0% |
| TTTGATTCACGATTTGAATC+TGG | - | chr4_2:15787610-15787629 | Msa0591480:intron | 30.0% | |
| AATCTGGATTTGATATGTTC+AGG | - | chr4_2:15787626-15787645 | Msa0591480:intron | 30.0% | |
| TGATATGTTCAGGTACAATA+TGG | - | chr4_2:15787636-15787655 | Msa0591480:intron | 30.0% | |
| AATATGGACAACACAATAGA+TGG | - | chr4_2:15787652-15787671 | Msa0591480:intron | 30.0% | |
| ! | TTTTTACCTTATTCCCATCT+TGG | + | chr4_2:15787827-15787846 | None:intergenic | 30.0% |
| ! | AACTCTTTTATCTACTTCCT+TGG | - | chr4_2:15787977-15787996 | Msa0591480:intron | 30.0% |
| ATTATAGGGCTAAATTTCCA+AGG | + | chr4_2:15787997-15788016 | None:intergenic | 30.0% | |
| !! | CTTTCCTTTTCTGATAATGT+CGG | + | chr4_2:15788097-15788116 | None:intergenic | 30.0% |
| GACGTATGGAAAAATTCTAT+TGG | - | chr4_2:15788346-15788365 | Msa0591480:intron | 30.0% | |
| TTGAAACTTAGATTGAGCTA+TGG | + | chr4_2:15788489-15788508 | None:intergenic | 30.0% | |
| AATGATCTGAAAACAGCTTA+CGG | + | chr4_2:15788607-15788626 | None:intergenic | 30.0% | |
| !!! | TAGATTTTTTTGGTGCATTG+AGG | - | chr4_2:15788871-15788890 | Msa0591480:intron | 30.0% |
| !!! | AGATTTTTTTGGTGCATTGA+GGG | - | chr4_2:15788872-15788891 | Msa0591480:intron | 30.0% |
| AAGACTTGTGAATTCAAAAG+AGG | - | chr4_2:15788959-15788978 | Msa0591480:intron | 30.0% | |
| AGACTTGTGAATTCAAAAGA+GGG | - | chr4_2:15788960-15788979 | Msa0591480:intron | 30.0% | |
| ATTGACAAGCTACTAGAATA+CGG | - | chr4_2:15789014-15789033 | Msa0591480:intron | 30.0% | |
| ACTAGAATACGGAAATATGT+TGG | - | chr4_2:15789025-15789044 | Msa0591480:intron | 30.0% | |
| !! | TAGGTCTAAAGCAAACTTTT+AGG | + | chr4_2:15789201-15789220 | None:intergenic | 30.0% |
| AATTCTCAAAACTCAACCAT+AGG | + | chr4_2:15789563-15789582 | None:intergenic | 30.0% | |
| CATCTTATAGAAAGCAATGT+TGG | - | chr4_2:15789591-15789610 | Msa0591480:five_prime_UTR | 30.0% | |
| ! | AGCTCTAATGAACACAAATT+TGG | + | chr4_2:15789656-15789675 | None:intergenic | 30.0% |
| !! | TTGAGTTGATAGAAAGAGAG+AGG | + | chr4_2:15786022-15786041 | None:intergenic | 35.0% |
| TCAACTCAATCCAATCACTT+TGG | - | chr4_2:15786038-15786057 | Msa0591480:three_prime_UTR | 35.0% | |
| AATTGTTGGAGCCATTAACA+TGG | - | chr4_2:15786149-15786168 | Msa0591480:three_prime_UTR | 35.0% | |
| ATTGCTAATCTAGCACATCT+TGG | + | chr4_2:15786332-15786351 | None:intergenic | 35.0% | |
| TCTCCACGATATCAAAAGAT+TGG | + | chr4_2:15786535-15786554 | None:intergenic | 35.0% | |
| GAGTTTGTCTGGTAACTTTA+AGG | - | chr4_2:15786903-15786922 | Msa0591480:intron | 35.0% | |
| !! | GTCTGGTAACTTTAAGGTTT+CGG | - | chr4_2:15786909-15786928 | Msa0591480:intron | 35.0% |
| !! | ACCGGTACTGATATAATCAT+AGG | + | chr4_2:15787100-15787119 | None:intergenic | 35.0% |
| GTATATTGCACCTGCATTTA+TGG | - | chr4_2:15787678-15787697 | Msa0591480:intron | 35.0% | |
| CTAACTATGATACTTGGCTT+AGG | - | chr4_2:15787916-15787935 | Msa0591480:CDS | 35.0% | |
| ATTTCCACTTTCCAATTCTC+CGG | + | chr4_2:15788028-15788047 | None:intergenic | 35.0% | |
| TTCATCAATGATCTTGATGC+AGG | - | chr4_2:15788129-15788148 | Msa0591480:intron | 35.0% | |
| ATACACAGTCAATAACCAGA+TGG | - | chr4_2:15788179-15788198 | Msa0591480:intron | 35.0% | |
| ! | TCTTCTTTGTTGTACATACC+GGG | + | chr4_2:15788255-15788274 | None:intergenic | 35.0% |
| ! | CTCTTCTTTGTTGTACATAC+CGG | + | chr4_2:15788256-15788275 | None:intergenic | 35.0% |
| TATGCTCCTTTAATTCGTGA+TGG | - | chr4_2:15788324-15788343 | Msa0591480:intron | 35.0% | |
| ATACGTCCATCACGAATTAA+AGG | + | chr4_2:15788333-15788352 | None:intergenic | 35.0% | |
| !! | TTTAATTCGTGATGGACGTA+TGG | - | chr4_2:15788332-15788351 | Msa0591480:intron | 35.0% |
| !! | GTGTATGTCAAGGTATTTTC+AGG | - | chr4_2:15788394-15788413 | Msa0591480:intron | 35.0% |
| TCTTGACAATGTCATCCTTA+GGG | + | chr4_2:15788431-15788450 | None:intergenic | 35.0% | |
| ATCTTGACAATGTCATCCTT+AGG | + | chr4_2:15788432-15788451 | None:intergenic | 35.0% | |
| ! | TACTAACAAAAGCACATCTG+AGG | - | chr4_2:15788543-15788562 | Msa0591480:CDS | 35.0% |
| AGGAATTGGATATCTGGTAT+TGG | - | chr4_2:15788918-15788937 | Msa0591480:intron | 35.0% | |
| ATCTTTGGTTGCTCAAAAGT+TGG | + | chr4_2:15788990-15789009 | None:intergenic | 35.0% | |
| AGCTTGTCAATAGTCATCTT+TGG | + | chr4_2:15789005-15789024 | None:intergenic | 35.0% | |
| TCTTCACATTCTCTTGTTCT+TGG | + | chr4_2:15789052-15789071 | None:intergenic | 35.0% | |
| AAGAACAAGAGAATGTGAAG+AGG | - | chr4_2:15789051-15789070 | Msa0591480:intron | 35.0% | |
| AGAACAAGAGAATGTGAAGA+GGG | - | chr4_2:15789052-15789071 | Msa0591480:intron | 35.0% | |
| ATCAAGACTGGAAACTTCTA+TGG | - | chr4_2:15789134-15789153 | Msa0591480:intron | 35.0% | |
| TTATCTTACTGTTTGGATGC+AGG | - | chr4_2:15789273-15789292 | Msa0591480:intron | 35.0% | |
| ! | GATCATAGTTTTCTGCAGAA+GGG | + | chr4_2:15789347-15789366 | None:intergenic | 35.0% |
| TGCATTAATCTCACCACTTT+AGG | - | chr4_2:15789510-15789529 | Msa0591480:five_prime_UTR | 35.0% | |
| TGATTGTGCAAAATGAAAGG+AGG | + | chr4_2:15789628-15789647 | None:intergenic | 35.0% | |
| ACGTGATTGTGCAAAATGAA+AGG | + | chr4_2:15789631-15789650 | None:intergenic | 35.0% | |
| TGAAGAAACTTGAAGCTGAG+TGG | + | chr4_2:15785975-15785994 | None:intergenic | 40.0% | |
| GATAGAAAGAGAGAGGTGAT+AGG | + | chr4_2:15786015-15786034 | None:intergenic | 40.0% | |
| GCAACTTCTGTGACAATTGT+TGG | - | chr4_2:15786135-15786154 | Msa0591480:three_prime_UTR | 40.0% | |
| TTCTACCTGTGCCATGTTAA+TGG | + | chr4_2:15786163-15786182 | None:intergenic | 40.0% | |
| GCACATCTTGGACATAAGAA+TGG | + | chr4_2:15786320-15786339 | None:intergenic | 40.0% | |
| GATTTGAACTCTATCCCTTG+AGG | + | chr4_2:15786373-15786392 | None:intergenic | 40.0% | |
| AAAGGTTTGCAGCTGCAATT+TGG | + | chr4_2:15786639-15786658 | None:intergenic | 40.0% | |
| AGACTACAGACTTAGAGTCA+TGG | + | chr4_2:15786672-15786691 | None:intergenic | 40.0% | |
| !! | TCGCAGAACTAGCTTTCTTA+AGG | + | chr4_2:15786870-15786889 | None:intergenic | 40.0% |
| AGTTACCAGACAAACTCTTC+TGG | + | chr4_2:15786900-15786919 | None:intergenic | 40.0% | |
| ATGACCAACAGGATATCACA+AGG | - | chr4_2:15787004-15787023 | Msa0591480:intron | 40.0% | |
| TGACCAACAGGATATCACAA+GGG | - | chr4_2:15787005-15787024 | Msa0591480:intron | 40.0% | |
| AGAATCATCACTGTGAATCG+TGG | + | chr4_2:15787371-15787390 | None:intergenic | 40.0% | |
| AGGCTGGTAGATGATATTCT+AGG | - | chr4_2:15787506-15787525 | Msa0591480:CDS | 40.0% | |
| ACAAGCTTGTCCATAAATGC+AGG | + | chr4_2:15787691-15787710 | None:intergenic | 40.0% | |
| ! | TTCCTCTCATTTTGGGCATT+TGG | - | chr4_2:15787755-15787774 | Msa0591480:intron | 40.0% |
| ! | TCCTCTCATTTTGGGCATTT+GGG | - | chr4_2:15787756-15787775 | Msa0591480:intron | 40.0% |
| TCTTTGCCAAGATGGGAATA+AGG | - | chr4_2:15787818-15787837 | Msa0591480:CDS | 40.0% | |
| CACACGCTAACTATGATACT+TGG | - | chr4_2:15787910-15787929 | Msa0591480:CDS | 40.0% | |
| ATGATACTTGGCTTAGGAGT+AGG | - | chr4_2:15787922-15787941 | Msa0591480:CDS | 40.0% | |
| GAATTGGAAAGTGGAAATGC+AGG | - | chr4_2:15788030-15788049 | Msa0591480:intron | 40.0% | |
| CTTTGCCTAATCAACTTTGC+AGG | + | chr4_2:15788060-15788079 | None:intergenic | 40.0% | |
| ! | CTGCAAAGTTGATTAGGCAA+AGG | - | chr4_2:15788058-15788077 | Msa0591480:intron | 40.0% |
| GTTGTCAGCAATGTTCATGA+GGG | + | chr4_2:15788214-15788233 | None:intergenic | 40.0% | |
| TCATTTCCAGTGACGATGAT+AGG | + | chr4_2:15788291-15788310 | None:intergenic | 40.0% | |
| !! | CAAGGTATTTTCAGGACAGA+TGG | - | chr4_2:15788402-15788421 | Msa0591480:intron | 40.0% |
| GCTGTTTGCATAAGCTATCA+TGG | + | chr4_2:15788641-15788660 | None:intergenic | 40.0% | |
| CAAGTCTCGAACTCATATCA+TGG | + | chr4_2:15788811-15788830 | None:intergenic | 40.0% | |
| CATGATATGAGTTCGAGACT+TGG | - | chr4_2:15788809-15788828 | Msa0591480:intron | 40.0% | |
| ATGACGATGAAGTCAGGAAT+TGG | - | chr4_2:15788904-15788923 | Msa0591480:intron | 40.0% | |
| GAAGTCAGGAATTGGATATC+TGG | - | chr4_2:15788912-15788931 | Msa0591480:intron | 40.0% | |
| !! | TTGGATATCTGGTATTGGTG+TGG | - | chr4_2:15788923-15788942 | Msa0591480:intron | 40.0% |
| TTTGGTTGCTCAAAAGTTGG+AGG | + | chr4_2:15788987-15789006 | None:intergenic | 40.0% | |
| AATGACGATGCTATCAAGAC+TGG | - | chr4_2:15789122-15789141 | Msa0591480:intron | 40.0% | |
| CTACGACAAATATGTCGTGT+CGG | - | chr4_2:15789218-15789237 | Msa0591480:intron | 40.0% | |
| TGTCGGTCTTGACAATAACT+TGG | - | chr4_2:15789235-15789254 | Msa0591480:intron | 40.0% | |
| ! | GGATCATAGTTTTCTGCAGA+AGG | + | chr4_2:15789348-15789367 | None:intergenic | 40.0% |
| !! | TTGTTATTGGTGGTGTCCTA+TGG | - | chr4_2:15789544-15789563 | Msa0591480:five_prime_UTR | 40.0% |
| GAGCTGAGTTCCAAAGTGAT+TGG | + | chr4_2:15786051-15786070 | None:intergenic | 45.0% | |
| GGATAGAGTTCAAATCCCCT+CGG | - | chr4_2:15786377-15786396 | Msa0591480:intron | 45.0% | |
| GATAGAGTTCAAATCCCCTC+GGG | - | chr4_2:15786378-15786397 | Msa0591480:intron | 45.0% | |
| ATAGAGTTCAAATCCCCTCG+GGG | - | chr4_2:15786379-15786398 | Msa0591480:intron | 45.0% | |
| ! | AAATTGAACGGCTCTAGCAG+TGG | - | chr4_2:15786808-15786827 | Msa0591480:intron | 45.0% |
| TGAGGAAAAGCAGACCTCAA+AGG | - | chr4_2:15786948-15786967 | Msa0591480:intron | 45.0% | |
| GATATCCTGTTGGTCATCTG+AGG | + | chr4_2:15787001-15787020 | None:intergenic | 45.0% | |
| GACCAACAGGATATCACAAG+GGG | - | chr4_2:15787006-15787025 | Msa0591480:intron | 45.0% | |
| TTCCCCTTGTGATATCCTGT+TGG | + | chr4_2:15787011-15787030 | None:intergenic | 45.0% | |
| ACAGGATATCACAAGGGGAA+AGG | - | chr4_2:15787011-15787030 | Msa0591480:intron | 45.0% | |
| CAGGATATCACAAGGGGAAA+GGG | - | chr4_2:15787012-15787031 | Msa0591480:intron | 45.0% | |
| TATCACAAGGGGAAAGGGAA+AGG | - | chr4_2:15787017-15787036 | Msa0591480:intron | 45.0% | |
| CAGTGTCTTTCAAGCTCCAA+CGG | - | chr4_2:15787044-15787063 | Msa0591480:intron | 45.0% | |
| ATGAACTTACTGGCGAAGAC+CGG | + | chr4_2:15787118-15787137 | None:intergenic | 45.0% | |
| GGGCAGACTACAACAAGTTT+AGG | + | chr4_2:15787416-15787435 | None:intergenic | 45.0% | |
| ! | CCTCTCATTTTGGGCATTTG+GGG | - | chr4_2:15787757-15787776 | Msa0591480:intron | 45.0% |
| TGAGCTTGTCTTTGCCAAGA+TGG | - | chr4_2:15787810-15787829 | Msa0591480:CDS | 45.0% | |
| GAGCTTGTCTTTGCCAAGAT+GGG | - | chr4_2:15787811-15787830 | Msa0591480:CDS | 45.0% | |
| AGCCCTATAATGATGAGTGC+CGG | - | chr4_2:15788006-15788025 | Msa0591480:intron | 45.0% | |
| CTCCGGCACTCATCATTATA+GGG | + | chr4_2:15788011-15788030 | None:intergenic | 45.0% | |
| TCTCCGGCACTCATCATTAT+AGG | + | chr4_2:15788012-15788031 | None:intergenic | 45.0% | |
| !! | AATGATGAGTGCCGGAGAAT+TGG | - | chr4_2:15788014-15788033 | Msa0591480:intron | 45.0% |
| ! | GAGAGCCTGCAAAGTTGATT+AGG | - | chr4_2:15788052-15788071 | Msa0591480:intron | 45.0% |
| GCGTCCGACATTATCAGAAA+AGG | - | chr4_2:15788090-15788109 | Msa0591480:intron | 45.0% | |
| AATGATCTTGATGCAGGAGC+TGG | - | chr4_2:15788135-15788154 | Msa0591480:intron | 45.0% | |
| TGAGGGTTGCATTTACCATC+TGG | + | chr4_2:15788197-15788216 | None:intergenic | 45.0% | |
| GGTTGTCAGCAATGTTCATG+AGG | + | chr4_2:15788215-15788234 | None:intergenic | 45.0% | |
| CGGGAAGTTGAACATTGGTA+GGG | + | chr4_2:15788236-15788255 | None:intergenic | 45.0% | |
| CCTACCAATGTTCAACTTCC+CGG | - | chr4_2:15788234-15788253 | Msa0591480:intron | 45.0% | |
| CATACCGGGAAGTTGAACAT+TGG | + | chr4_2:15788241-15788260 | None:intergenic | 45.0% | |
| AGTGACGATGATAGGAACAC+GGG | + | chr4_2:15788283-15788302 | None:intergenic | 45.0% | |
| CAGTGACGATGATAGGAACA+CGG | + | chr4_2:15788284-15788303 | None:intergenic | 45.0% | |
| !! | GATAGGGTTGGTGTATGTCA+AGG | - | chr4_2:15788384-15788403 | Msa0591480:intron | 45.0% |
| AAGATTGTCGACACATTCCC+TGG | - | chr4_2:15788447-15788466 | Msa0591480:intron | 45.0% | |
| ACATTCCCTGGACAGTCAAT+TGG | - | chr4_2:15788459-15788478 | Msa0591480:intron | 45.0% | |
| GCTTACCAATTGACTGTCCA+GGG | + | chr4_2:15788467-15788486 | None:intergenic | 45.0% | |
| GAGTGTATGACGATGAAGTC+AGG | - | chr4_2:15788898-15788917 | Msa0591480:intron | 45.0% | |
| !! | GGTATTGGTGTGGAGAGTAT+TGG | - | chr4_2:15788933-15788952 | Msa0591480:intron | 45.0% |
| AGCTGACAAATACCTCAGTC+AGG | - | chr4_2:15789082-15789101 | Msa0591480:intron | 45.0% | |
| CGACACGACATATTTGTCGT+AGG | + | chr4_2:15789220-15789239 | None:intergenic | 45.0% | |
| TACTGTTTGGATGCAGGACA+AGG | - | chr4_2:15789279-15789298 | Msa0591480:intron | 45.0% | |
| GTTCCTTTACCTGTCCAAGA+AGG | - | chr4_2:15789312-15789331 | Msa0591480:intron | 45.0% | |
| CAACCTTCTTGGACAGGTAA+AGG | + | chr4_2:15789318-15789337 | None:intergenic | 45.0% | |
| TGGAGCCATTAACATGGCAC+AGG | - | chr4_2:15786155-15786174 | Msa0591480:three_prime_UTR | 50.0% | |
| AGTTTGGCCATGCAACCTCA+AGG | - | chr4_2:15786355-15786374 | Msa0591480:intron | 50.0% | |
| GTTTGGCCATGCAACCTCAA+GGG | - | chr4_2:15786356-15786375 | Msa0591480:intron | 50.0% | |
| CTCTATCCCTTGAGGTTGCA+TGG | + | chr4_2:15786365-15786384 | None:intergenic | 50.0% | |
| ! | ATTTTACTACCGTGCCCCGA+GGG | + | chr4_2:15786396-15786415 | None:intergenic | 50.0% |
| ! | TATTTTACTACCGTGCCCCG+AGG | + | chr4_2:15786397-15786416 | None:intergenic | 50.0% |
| TCCAGCCAGAAGAGTTTGTC+TGG | - | chr4_2:15786892-15786911 | Msa0591480:intron | 50.0% | |
| ACCAGACAAACTCTTCTGGC+TGG | + | chr4_2:15786896-15786915 | None:intergenic | 50.0% | |
| AGCAGACCTCAAAGGACAGA+TGG | - | chr4_2:15786956-15786975 | Msa0591480:intron | 50.0% | |
| GCAGACCTCAAAGGACAGAT+GGG | - | chr4_2:15786957-15786976 | Msa0591480:intron | 50.0% | |
| TGACACCTCAGATGACCAAC+AGG | - | chr4_2:15786993-15787012 | Msa0591480:intron | 50.0% | |
| TTTCAAGCTCCAACGGATGC+TGG | - | chr4_2:15787051-15787070 | Msa0591480:intron | 50.0% | |
| TAGTGAGTTCCAGCATCCGT+TGG | + | chr4_2:15787063-15787082 | None:intergenic | 50.0% | |
| CCCCAAATGCCCAAAATGAG+AGG | + | chr4_2:15787760-15787779 | None:intergenic | 50.0% | |
| ! | CTCATTTTGGGCATTTGGGG+AGG | - | chr4_2:15787760-15787779 | Msa0591480:intron | 50.0% |
| ATTTGGGGAGGCAAAGGTCA+AGG | - | chr4_2:15787772-15787791 | Msa0591480:CDS | 50.0% | |
| ! | AGTGCCGGAGAATTGGAAAG+TGG | - | chr4_2:15788021-15788040 | Msa0591480:intron | 50.0% |
| !! | GATTAGGCAAAGGTACCGTG+AGG | - | chr4_2:15788068-15788087 | Msa0591480:intron | 50.0% |
| ! | TGATAATGTCGGACGCCTCA+CGG | + | chr4_2:15788086-15788105 | None:intergenic | 50.0% |
| TGATGCAGGAGCTGGTAGAA+TGG | - | chr4_2:15788143-15788162 | Msa0591480:intron | 50.0% | |
| GATGCAGGAGCTGGTAGAAT+GGG | - | chr4_2:15788144-15788163 | Msa0591480:intron | 50.0% | |
| CCGGGAAGTTGAACATTGGT+AGG | + | chr4_2:15788237-15788256 | None:intergenic | 50.0% | |
| CGTGTTCCTATCATCGTCAC+TGG | - | chr4_2:15788282-15788301 | Msa0591480:intron | 50.0% | |
| CCAACCCTATCATCACGAGT+AGG | + | chr4_2:15788375-15788394 | None:intergenic | 50.0% | |
| CCTACTCGTGATGATAGGGT+TGG | - | chr4_2:15788372-15788391 | Msa0591480:intron | 50.0% | |
| GGCTTACCAATTGACTGTCC+AGG | + | chr4_2:15788468-15788487 | None:intergenic | 50.0% | |
| GCAACTTCCATCGTCACTTC+TGG | + | chr4_2:15789376-15789395 | None:intergenic | 50.0% | |
| ! | TTTTACTACCGTGCCCCGAG+GGG | + | chr4_2:15786395-15786414 | None:intergenic | 55.0% |
| TCACAACTTGGACGCGGTTG+AGG | + | chr4_2:15786584-15786603 | None:intergenic | 55.0% | |
| ATGTCTCCGCGCTCACAACT+TGG | + | chr4_2:15786596-15786615 | None:intergenic | 55.0% | |
| ACCTCAAAGGACAGATGGGC+TGG | - | chr4_2:15786961-15786980 | Msa0591480:intron | 55.0% | |
| TCCAGCCCATCTGTCCTTTG+AGG | + | chr4_2:15786965-15786984 | None:intergenic | 55.0% | |
| CACAAGGGGAAAGGGAAAGG+TGG | - | chr4_2:15787020-15787039 | Msa0591480:intron | 55.0% | |
| TTGGGCATTTGGGGAGGCAA+AGG | - | chr4_2:15787766-15787785 | Msa0591480:CDS | 55.0% | |
| GGCGCCTACTCGTGATGATA+GGG | - | chr4_2:15788368-15788387 | Msa0591480:intron | 55.0% | |
| CAGGACAGATGGTGTCCCTA+AGG | - | chr4_2:15788413-15788432 | Msa0591480:intron | 55.0% | |
| TACCTCAGTCAGGCAGCTCT+TGG | - | chr4_2:15789092-15789111 | Msa0591480:intron | 55.0% | |
| TCAGCGCAACCTTCTTGGAC+AGG | + | chr4_2:15789324-15789343 | None:intergenic | 55.0% | |
| AAGGGTCAGCGCAACCTTCT+TGG | + | chr4_2:15789329-15789348 | None:intergenic | 55.0% | |
| ! | CCATCGTCACTTCTGGCTGT+CGG | + | chr4_2:15789369-15789388 | None:intergenic | 55.0% |
| GTTCAAATCCCCTCGGGGCA+CGG | - | chr4_2:15786384-15786403 | Msa0591480:intron | 60.0% | |
| GCAGGAGCTGGTAGAATGGG+TGG | - | chr4_2:15788147-15788166 | Msa0591480:intron | 60.0% | |
| GGGCGCCTACTCGTGATGAT+AGG | - | chr4_2:15788367-15788386 | Msa0591480:intron | 60.0% | |
| CTCCAAGAGCTGCCTGACTG+AGG | + | chr4_2:15789097-15789116 | None:intergenic | 60.0% | |
| CCGACAGCCAGAAGTGACGA+TGG | - | chr4_2:15789366-15789385 | Msa0591480:intron | 60.0% | |
| CCGCGCTCACAACTTGGACG+CGG | + | chr4_2:15786590-15786609 | None:intergenic | 65.0% | |
| CCGCGTCCAAGTTGTGAGCG+CGG | - | chr4_2:15786587-15786606 | Msa0591480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 15785855 | 15789746 | 15785855 | ID=Msa0591480;Name=Msa0591480 |
| chr4_2 | mRNA | 15785855 | 15789746 | 15785855 | ID=Msa0591480-mRNA-1;Parent=Msa0591480;Name=Msa0591480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=277|1|1|1|1|1|6|336|476 |
| chr4_2 | exon | 15785855 | 15786306 | 15785855 | ID=Msa0591480-mRNA-1:exon:4580;Parent=Msa0591480-mRNA-1 |
| chr4_2 | exon | 15786446 | 15786727 | 15786446 | ID=Msa0591480-mRNA-1:exon:4579;Parent=Msa0591480-mRNA-1 |
| chr4_2 | exon | 15787121 | 15787593 | 15787121 | ID=Msa0591480-mRNA-1:exon:4578;Parent=Msa0591480-mRNA-1 |
| chr4_2 | exon | 15787762 | 15787953 | 15787762 | ID=Msa0591480-mRNA-1:exon:4577;Parent=Msa0591480-mRNA-1 |
| chr4_2 | exon | 15788474 | 15788796 | 15788474 | ID=Msa0591480-mRNA-1:exon:4576;Parent=Msa0591480-mRNA-1 |
| chr4_2 | exon | 15789425 | 15789746 | 15789425 | ID=Msa0591480-mRNA-1:exon:4575;Parent=Msa0591480-mRNA-1 |
| chr4_2 | five_prime_UTR | 15789470 | 15789746 | 15789470 | ID=Msa0591480-mRNA-1:five_prime_utr;Parent=Msa0591480-mRNA-1 |
| chr4_2 | CDS | 15789425 | 15789469 | 15789425 | ID=Msa0591480-mRNA-1:cds;Parent=Msa0591480-mRNA-1 |
| chr4_2 | CDS | 15788474 | 15788796 | 15788474 | ID=Msa0591480-mRNA-1:cds;Parent=Msa0591480-mRNA-1 |
| chr4_2 | CDS | 15787762 | 15787953 | 15787762 | ID=Msa0591480-mRNA-1:cds;Parent=Msa0591480-mRNA-1 |
| chr4_2 | CDS | 15787121 | 15787593 | 15787121 | ID=Msa0591480-mRNA-1:cds;Parent=Msa0591480-mRNA-1 |
| chr4_2 | CDS | 15786446 | 15786727 | 15786446 | ID=Msa0591480-mRNA-1:cds;Parent=Msa0591480-mRNA-1 |
| chr4_2 | CDS | 15786191 | 15786306 | 15786191 | ID=Msa0591480-mRNA-1:cds;Parent=Msa0591480-mRNA-1 |
| chr4_2 | three_prime_UTR | 15785855 | 15786190 | 15785855 | ID=Msa0591480-mRNA-1:three_prime_utr;Parent=Msa0591480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
