Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631680 | XP_003604901.1 | 98.529 | 476 | 7 | 0 | 1 | 476 | 1 | 476 | 0.0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631680 | sp|Q7X9A0|RCA1_LARTR | 81.497 | 481 | 79 | 6 | 1 | 476 | 1 | 476 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631680 | G7JTD2 | 98.529 | 476 | 7 | 0 | 1 | 476 | 1 | 476 | 0.0 | 972 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001510 | Msa0631680 | 0.800697 | 1.276080e-48 | -8.615850e-47 |
| Msa0007570 | Msa0631680 | 0.828548 | 8.458566e-55 | -8.615850e-47 |
| Msa0015220 | Msa0631680 | 0.803903 | 2.791228e-49 | -8.615850e-47 |
| Msa0074860 | Msa0631680 | 0.808547 | 2.934913e-50 | -8.615850e-47 |
| Msa0094170 | Msa0631680 | 0.820218 | 7.705550e-53 | -8.615850e-47 |
| Msa0605150 | Msa0631680 | 0.802718 | 4.912162e-49 | -8.615850e-47 |
| Msa0614060 | Msa0631680 | 0.809067 | 2.272072e-50 | -8.615850e-47 |
| Msa0631680 | Msa0638550 | 0.809170 | 2.160350e-50 | -8.615850e-47 |
| Msa0631680 | Msa0644610 | 0.804931 | 1.704196e-49 | -8.615850e-47 |
| Msa0631680 | Msa0661540 | 0.816246 | 6.103332e-52 | -8.615850e-47 |
| Msa0631680 | Msa0670350 | 0.878920 | 1.899969e-69 | -8.615850e-47 |
| Msa0631680 | Msa0685860 | 0.800022 | 1.751138e-48 | -8.615850e-47 |
| Msa0631680 | Msa0686730 | 0.872119 | 4.062640e-67 | -8.615850e-47 |
| Msa0631680 | Msa0699900 | 0.805161 | 1.525353e-49 | -8.615850e-47 |
| Msa0631680 | Msa0717540 | 0.804759 | 1.851478e-49 | -8.615850e-47 |
| Msa0631680 | Msa0719330 | 0.819399 | 1.185705e-52 | -8.615850e-47 |
| Msa0631680 | Msa0745270 | 0.801149 | 1.031610e-48 | -8.615850e-47 |
| Msa0631680 | Msa0754020 | 0.814488 | 1.501997e-51 | -8.615850e-47 |
| Msa0631680 | Msa0758880 | 0.805657 | 1.200892e-49 | -8.615850e-47 |
| Msa0631680 | Msa0772160 | 0.830695 | 2.540785e-55 | -8.615850e-47 |
| Msa0631680 | Msa0805000 | 0.803001 | 4.293584e-49 | -8.615850e-47 |
| Msa0631680 | Msa0807100 | 0.813748 | 2.187934e-51 | -8.615850e-47 |
| Msa0631680 | Msa0833030 | 0.815836 | 7.536334e-52 | -8.615850e-47 |
| Msa0631680 | Msa0840450 | 0.801736 | 7.821120e-49 | -8.615850e-47 |
| Msa0631680 | Msa0868510 | 0.800290 | 1.544455e-48 | -8.615850e-47 |
| Msa0631680 | Msa0869420 | 0.802035 | 6.789343e-49 | -8.615850e-47 |
| Msa0631680 | Msa0947550 | 0.813420 | 2.582643e-51 | -8.615850e-47 |
| Msa0631680 | Msa1020160 | 0.823151 | 1.615970e-53 | -8.615850e-47 |
| Msa0631680 | Msa1032790 | 0.800517 | 1.388680e-48 | -8.615850e-47 |
| Msa0631680 | Msa1036260 | 0.801093 | 1.059492e-48 | -8.615850e-47 |
| Msa0631680 | Msa1044050 | 0.822243 | 2.629716e-53 | -8.615850e-47 |
| Msa0631680 | Msa1118890 | 0.800823 | 1.202766e-48 | -8.615850e-47 |
| Msa0631680 | Msa1127530 | 0.806777 | 6.977241e-50 | -8.615850e-47 |
| Msa0631680 | Msa1129200 | 0.805581 | 1.245557e-49 | -8.615850e-47 |
| Msa0631680 | Msa1156120 | 0.802891 | 4.523385e-49 | -8.615850e-47 |
| Msa0631680 | Msa1158540 | 0.808726 | 2.688431e-50 | -8.615850e-47 |
| Msa0631680 | Msa1161550 | 0.811100 | 8.287338e-51 | -8.615850e-47 |
| Msa0631680 | Msa1165330 | 0.820439 | 6.853664e-53 | -8.615850e-47 |
| Msa0631680 | Msa1171640 | 0.815486 | 9.020989e-52 | -8.615850e-47 |
| Msa0631680 | Msa1184100 | 0.807724 | 4.395680e-50 | -8.615850e-47 |
| Msa0631680 | Msa1266750 | 0.801128 | 1.042188e-48 | -8.615850e-47 |
| Msa0631680 | Msa1308430 | 0.801849 | 7.416613e-49 | -8.615850e-47 |
| Msa0631680 | Msa1310620 | 0.807569 | 4.740094e-50 | -8.615850e-47 |
| Msa0631680 | Msa1341710 | 0.800494 | 1.403945e-48 | -8.615850e-47 |
| Msa0631680 | Msa1375570 | 0.800089 | 1.697337e-48 | -8.615850e-47 |
| Msa0631680 | Msa1405990 | 0.800111 | 1.680108e-48 | -8.615850e-47 |
| Msa0631680 | Msa1408860 | 0.810699 | 1.012427e-50 | -8.615850e-47 |
| Msa0631680 | Msa1440140 | 0.803756 | 2.994462e-49 | -8.615850e-47 |
| Msa0148140 | Msa0631680 | 0.801333 | 9.459870e-49 | -8.615850e-47 |
| Msa0164580 | Msa0631680 | 0.802001 | 6.901987e-49 | -8.615850e-47 |
| Msa0196620 | Msa0631680 | 0.816770 | 4.658411e-52 | -8.615850e-47 |
| Msa0225080 | Msa0631680 | 0.801622 | 8.256240e-49 | -8.615850e-47 |
| Msa0225790 | Msa0631680 | 0.827536 | 1.481791e-54 | -8.615850e-47 |
| Msa0238530 | Msa0631680 | 0.821367 | 4.191822e-53 | -8.615850e-47 |
| Msa0369080 | Msa0631680 | 0.813559 | 2.407702e-51 | -8.615850e-47 |
| Msa0387630 | Msa0631680 | 0.812075 | 5.087509e-51 | -8.615850e-47 |
| Msa0402490 | Msa0631680 | 0.834996 | 2.169686e-56 | -8.615850e-47 |
| Msa0416430 | Msa0631680 | 0.824202 | 9.169066e-54 | -8.615850e-47 |
| Msa0436660 | Msa0631680 | 0.800344 | 1.506185e-48 | -8.615850e-47 |
| Msa0450890 | Msa0631680 | 0.800576 | 1.350539e-48 | -8.615850e-47 |
| Msa0457600 | Msa0631680 | 0.803864 | 2.843483e-49 | -8.615850e-47 |
| Msa0463030 | Msa0631680 | 0.807337 | 5.309876e-50 | -8.615850e-47 |
| Msa0469770 | Msa0631680 | 0.817049 | 4.034646e-52 | -8.615850e-47 |
| Msa0260580 | Msa0631680 | 0.823147 | 1.619705e-53 | -8.615850e-47 |
| Msa0260640 | Msa0631680 | 0.834313 | 3.221003e-56 | -8.615850e-47 |
| Msa0329360 | Msa0631680 | 0.810886 | 9.221335e-51 | -8.615850e-47 |
| Msa0330240 | Msa0631680 | 0.801835 | 7.463134e-49 | -8.615850e-47 |
| Msa0334450 | Msa0631680 | 0.802419 | 5.661123e-49 | -8.615850e-47 |
| Msa0340700 | Msa0631680 | 0.802146 | 6.444167e-49 | -8.615850e-47 |
| Msa0497140 | Msa0631680 | 0.815898 | 7.302720e-52 | -8.615850e-47 |
| Msa0498250 | Msa0631680 | 0.809385 | 1.942402e-50 | -8.615850e-47 |
| Msa0508620 | Msa0631680 | 0.809597 | 1.749495e-50 | -8.615850e-47 |
| Msa0508660 | Msa0631680 | 0.812757 | 3.611204e-51 | -8.615850e-47 |
| Msa0508770 | Msa0631680 | 0.818561 | 1.838263e-52 | -8.615850e-47 |
| Msa0515400 | Msa0631680 | 0.800234 | 1.586209e-48 | -8.615850e-47 |
| Msa0517820 | Msa0631680 | 0.802012 | 6.864655e-49 | -8.615850e-47 |
| Msa0520480 | Msa0631680 | 0.810370 | 1.192436e-50 | -8.615850e-47 |
| Msa0535370 | Msa0631680 | 0.818548 | 1.850566e-52 | -8.615850e-47 |
| Msa0537960 | Msa0631680 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0552250 | Msa0631680 | 0.806453 | 8.165311e-50 | -8.615850e-47 |
| Msa0585810 | Msa0631680 | 0.815819 | 7.604260e-52 | -8.615850e-47 |
| Msa0591480 | Msa0631680 | 0.831365 | 1.740101e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631680 | MtrunA17_Chr4g0009431 | 98.529 | 476 | 7 | 0 | 1 | 476 | 1 | 476 | 0.0 | 972 |
| Msa0631680 | MtrunA17_Chr5g0435631 | 82.143 | 476 | 84 | 1 | 1 | 476 | 1 | 475 | 0.0 | 830 |
| Msa0631680 | MtrunA17_Chr3g0112121 | 82.192 | 438 | 75 | 3 | 1 | 437 | 1 | 436 | 0.0 | 746 |
| Msa0631680 | MtrunA17_Chr2g0334101 | 53.767 | 292 | 128 | 6 | 134 | 419 | 123 | 413 | 4.48e-109 | 329 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631680 | AT2G39730.1 | 78.616 | 477 | 98 | 2 | 1 | 476 | 1 | 474 | 0.0 | 785 |
| Msa0631680 | AT2G39730.2 | 77.629 | 447 | 96 | 2 | 1 | 446 | 1 | 444 | 0.0 | 723 |
| Msa0631680 | AT2G39730.3 | 78.458 | 441 | 91 | 2 | 1 | 440 | 1 | 438 | 0.0 | 721 |
| Msa0631680 | AT1G73110.2 | 51.724 | 319 | 145 | 7 | 107 | 419 | 15 | 330 | 1.69e-110 | 330 |
| Msa0631680 | AT1G73110.1 | 52.564 | 312 | 139 | 7 | 114 | 419 | 119 | 427 | 4.60e-109 | 330 |
Find 143 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAAGATTCCTCTCATTT+TGG | 0.104711 | 4_3:-14859438 | Msa0631680:CDS |
| GTATATTGCACCCGCATTTA+TGG | 0.150643 | 4_3:-14859507 | Msa0631680:CDS |
| GAGTTTGTCTGGTAACTTTA+AGG | 0.180254 | 4_3:-14860244 | Msa0631680:CDS |
| GAAGGGTCAGCGCAACCTTC+TGG | 0.200974 | 4_3:+14857836 | None:intergenic |
| ATGAGAGGAATCTTGATATT+TGG | 0.203139 | 4_3:+14859443 | None:intergenic |
| ACCATTATAATATATGTTAT+TGG | 0.224857 | 4_3:+14861030 | None:intergenic |
| TCTTCACATTCTCTTGTTCT+TGG | 0.240935 | 4_3:+14858112 | None:intergenic |
| TCTCCGGCACTCATCATTAT+AGG | 0.240969 | 4_3:+14859155 | None:intergenic |
| GGTAAGATTGTTGAATATTA+AGG | 0.249347 | 4_3:+14861069 | None:intergenic |
| CTTAAGAGAGTTCATAAATA+TGG | 0.259631 | 4_3:-14857746 | Msa0631680:three_prime_UTR |
| TGCATTAATCTCACCACTTT+AGG | 0.260377 | 4_3:-14857653 | Msa0631680:three_prime_UTR |
| TGAGGTATTTGTCAGCTAAT+TGG | 0.262434 | 4_3:+14858085 | None:intergenic |
| CAATCTTACCAAACTTGTTT+TGG | 0.267188 | 4_3:-14861056 | Msa0631680:five_prime_UTR |
| TCCAATAACATATATTATAA+TGG | 0.285846 | 4_3:-14861031 | Msa0631680:exon |
| ATGCGTCCGTCACGAATTAA+AGG | 0.289596 | 4_3:+14858834 | None:intergenic |
| GTCTGGTAACTTTAAGGTTT+CGG | 0.299605 | 4_3:-14860238 | Msa0631680:CDS |
| TTGTACCTGTGCCATGTTAA+TGG | 0.318352 | 4_3:+14860984 | None:intergenic |
| AGCTCTAATGAACACAAATT+TGG | 0.318750 | 4_3:+14857521 | None:intergenic |
| ATTGGAAACCAAAACAAGTT+TGG | 0.330403 | 4_3:+14861048 | None:intergenic |
| TATTTACCTGATTCCCATCT+TGG | 0.330825 | 4_3:+14859361 | None:intergenic |
| CTTTGCCTAATCAACTTTGC+AGG | 0.332302 | 4_3:+14859107 | None:intergenic |
| AATGCACCTTACATAAAATA+TGG | 0.337542 | 4_3:+14857670 | None:intergenic |
| GCAACTTCCATCGTCACTTC+TGG | 0.351528 | 4_3:+14857790 | None:intergenic |
| AATGATGAGTGCCGGAGAAT+TGG | 0.354739 | 4_3:-14859150 | Msa0631680:CDS |
| ATCAAGACTGGAAACTTCTA+TGG | 0.360535 | 4_3:-14858027 | Msa0631680:intron |
| TAAGTTGAGTTGATAGAAAG+AGG | 0.368018 | 4_3:+14861128 | None:intergenic |
| TCCAGCCCATCTGTCCTTTG+AGG | 0.369839 | 4_3:+14860185 | None:intergenic |
| CTTGACAAGCTACTAGAGTA+TGG | 0.372362 | 4_3:-14858147 | Msa0631680:CDS |
| TCGCAGAACTAGCTTTCTTA+AGG | 0.379560 | 4_3:+14860280 | None:intergenic |
| CTCTTCTTTGTTGTACATAC+CGG | 0.388448 | 4_3:+14858911 | None:intergenic |
| GGATATGTTCAGGTACAATA+TGG | 0.389026 | 4_3:-14859549 | Msa0631680:intron |
| AGCTTGTCAAGAGTCATCTT+TGG | 0.390025 | 4_3:+14858159 | None:intergenic |
| CTCCGGCACTCATCATTATA+GGG | 0.391535 | 4_3:+14859156 | None:intergenic |
| AGTTACCAGACAAACTCTTC+TGG | 0.399477 | 4_3:+14860250 | None:intergenic |
| TAGCTGATTTACGTGATATA+TGG | 0.400045 | 4_3:-14857499 | Msa0631680:three_prime_UTR |
| GAATTGAGTTCCAAAGTGAT+TGG | 0.405354 | 4_3:+14861103 | None:intergenic |
| AAGGGTCAGCGCAACCTTCT+GGG | 0.410738 | 4_3:+14857837 | None:intergenic |
| CCTACCAATGTTCAACTTCC+CGG | 0.413313 | 4_3:-14858930 | Msa0631680:CDS |
| AAGATTGTCGACACATTCCC+TGG | 0.416886 | 4_3:-14858717 | Msa0631680:CDS |
| TGAGGGTTGCATTTACCATC+TGG | 0.421559 | 4_3:+14858970 | None:intergenic |
| TCATTTCCAGTGACGATGAT+AGG | 0.423490 | 4_3:+14858876 | None:intergenic |
| TTTCAAGCTCCAACGGATGC+TGG | 0.424875 | 4_3:-14860096 | Msa0631680:CDS |
| TCTTTGCCAAGATGGGAATC+AGG | 0.428867 | 4_3:-14859367 | Msa0631680:intron |
| GAATATTAAGGAAGAAGAAA+TGG | 0.430925 | 4_3:+14861081 | None:intergenic |
| GAGAGCCTGCAAAGTTGATT+AGG | 0.432564 | 4_3:-14859112 | Msa0631680:CDS |
| GAAGTCAGGAATTGGATATC+TGG | 0.433568 | 4_3:-14858249 | Msa0631680:CDS |
| GTAACTTCTGTGACAATTGT+TGG | 0.434618 | 4_3:-14861009 | Msa0631680:CDS |
| TAAATGCGGGTGCAATATAC+AGG | 0.438233 | 4_3:+14859510 | None:intergenic |
| TACCTCAGTGAGGCAGCTCT+TGG | 0.438518 | 4_3:-14858069 | Msa0631680:CDS |
| ATGACGATGAAGTCAGGAAT+TGG | 0.439434 | 4_3:-14858257 | Msa0631680:CDS |
| TCCAGCCAGAAGAGTTTGTC+TGG | 0.441643 | 4_3:-14860255 | Msa0631680:CDS |
| AATATGGACAACACAGTTGA+TGG | 0.442941 | 4_3:-14859533 | Msa0631680:CDS |
| ATCTTTGGTTGCTCGAAAGT+TGG | 0.445047 | 4_3:+14858174 | None:intergenic |
| ATCTTGACAATGTCATCCTT+AGG | 0.455344 | 4_3:+14858735 | None:intergenic |
| CGAGCTTGTCTTTGCCAAGA+TGG | 0.455468 | 4_3:-14859375 | Msa0631680:CDS |
| TTCCCCTTGTGATATCCTGT+TGG | 0.457655 | 4_3:+14860139 | None:intergenic |
| TCAACTTAATCCAATCACTT+TGG | 0.459675 | 4_3:-14861113 | Msa0631680:five_prime_UTR |
| ACAAAATATACAACCTAAAG+TGG | 0.462806 | 4_3:+14857640 | None:intergenic |
| AAGTTGAGTTGATAGAAAGA+GGG | 0.463798 | 4_3:+14861129 | None:intergenic |
| AATAATGATGCTATCAAGAC+TGG | 0.465950 | 4_3:-14858039 | Msa0631680:CDS |
| CAACCTTCTGGGACAGGTAA+AGG | 0.470524 | 4_3:+14857848 | None:intergenic |
| CAGGATATCACAAGGGGAAA+GGG | 0.479596 | 4_3:-14860135 | Msa0631680:CDS |
| TTTGGTTGCTCGAAAGTTGG+AGG | 0.479859 | 4_3:+14858177 | None:intergenic |
| ACCTCAAAGGACAGATGGGC+TGG | 0.482103 | 4_3:-14860186 | Msa0631680:CDS |
| TTGGGCATTTGGGGAGGCAA+AGG | 0.485012 | 4_3:-14859419 | Msa0631680:CDS |
| GCGTCCGACATTATCAGAAA+AGG | 0.491800 | 4_3:-14859074 | Msa0631680:CDS |
| TTCATCAATGATCTTGATGC+AGG | 0.493471 | 4_3:-14859035 | Msa0631680:CDS |
| TGACACCTCAGATGACCAAC+AGG | 0.496044 | 4_3:-14860154 | Msa0631680:CDS |
| GAGTGTATGACGATGAAGTC+AGG | 0.497686 | 4_3:-14858263 | Msa0631680:CDS |
| CCGGGAAGTTGAACATTGGT+AGG | 0.497705 | 4_3:+14858930 | None:intergenic |
| GGCTTACCGATTGACTGTCC+AGG | 0.503024 | 4_3:+14858699 | None:intergenic |
| TTTAATTCGTGACGGACGCA+TGG | 0.505825 | 4_3:-14858832 | Msa0631680:CDS |
| GAATTGGAAAGCGGAAATGC+AGG | 0.508420 | 4_3:-14859134 | Msa0631680:CDS |
| GGTATTGGCGTGGAGAGTAT+TGG | 0.514744 | 4_3:-14858228 | Msa0631680:CDS |
| AGCAGACCTCAAAGGACAGA+TGG | 0.514834 | 4_3:-14860191 | Msa0631680:CDS |
| TCCTATGATTATATCAGTAC+CGG | 0.515211 | 4_3:-14860051 | Msa0631680:CDS |
| ATTTCCGCTTTCCAATTCTC+CGG | 0.516319 | 4_3:+14859139 | None:intergenic |
| TCAGCGCAACCTTCTGGGAC+AGG | 0.517907 | 4_3:+14857842 | None:intergenic |
| TCTTGACAATGTCATCCTTA+GGG | 0.521614 | 4_3:+14858736 | None:intergenic |
| CAGGACAGATGGTGTCCCTA+AGG | 0.522125 | 4_3:-14858751 | Msa0631680:CDS |
| AGGAATTGGATATCTGGTAT+TGG | 0.523533 | 4_3:-14858243 | Msa0631680:CDS |
| CGCGTGCCTATCATCGTCAC+TGG | 0.524273 | 4_3:-14858882 | Msa0631680:CDS |
| ACAGGATATCACAAGGGGAA+AGG | 0.531778 | 4_3:-14860136 | Msa0631680:CDS |
| ACATTCCCTGGACAGTCAAT+CGG | 0.532331 | 4_3:-14858705 | Msa0631680:intron |
| ACCGGTACTGATATAATCAT+AGG | 0.533522 | 4_3:+14860050 | None:intergenic |
| AAGACTTGTGAATTCAAAAG+AGG | 0.535398 | 4_3:-14858202 | Msa0631680:CDS |
| TTGAGTTGATAGAAAGAGGG+AGG | 0.537304 | 4_3:+14861132 | None:intergenic |
| TGATAATGTCGGACGCCTCA+CGG | 0.537380 | 4_3:+14859081 | None:intergenic |
| AATGATCTTGATGCAGGAGC+TGG | 0.538362 | 4_3:-14859029 | Msa0631680:CDS |
| TATCACAAGGGGAAAGGGAA+AGG | 0.540011 | 4_3:-14860130 | Msa0631680:CDS |
| GGTTGTCAGCGATGTTCATG+AGG | 0.546321 | 4_3:+14858952 | None:intergenic |
| GATAGAAAGAGGGAGGTGAG+AGG | 0.546349 | 4_3:+14861139 | None:intergenic |
| GATGCAGGAGCTGGTAGAAT+GGG | 0.546512 | 4_3:-14859020 | Msa0631680:CDS |
| GAGCTTGTCTTTGCCAAGAT+GGG | 0.547144 | 4_3:-14859374 | Msa0631680:CDS |
| ACCAGACAAACTCTTCTGGC+TGG | 0.558437 | 4_3:+14860254 | None:intergenic |
| CCATCGTCACTTCTGGCTGT+CGG | 0.561082 | 4_3:+14857797 | None:intergenic |
| ATTTGGGGAGGCAAAGGTCA+AGG | 0.561672 | 4_3:-14859413 | Msa0631680:CDS |
| CAGTGTCTTTCAAGCTCCAA+CGG | 0.565417 | 4_3:-14860103 | Msa0631680:CDS |
| ATGAACTTACTGGCGAAGAC+CGG | 0.565800 | 4_3:+14860032 | None:intergenic |
| TGATGCAGGAGCTGGTAGAA+TGG | 0.573216 | 4_3:-14859021 | Msa0631680:CDS |
| AAGAACAAGAGAATGTGAAG+AGG | 0.574498 | 4_3:-14858110 | Msa0631680:CDS |
| ACAAGCTTGTCCATAAATGC+GGG | 0.576151 | 4_3:+14859497 | None:intergenic |
| TCTTCTTTGTTGTACATACC+GGG | 0.579969 | 4_3:+14858912 | None:intergenic |
| GTTCCTTTACCTGTCCCAGA+AGG | 0.583970 | 4_3:-14857851 | Msa0631680:CDS |
| GTCATACACTCTAGCCCTCA+AGG | 0.585052 | 4_3:+14858275 | None:intergenic |
| AGCCCTATAATGATGAGTGC+CGG | 0.586108 | 4_3:-14859158 | Msa0631680:CDS |
| GACACTTATAGAAAGCAAGT+TGG | 0.586229 | 4_3:-14857583 | Msa0631680:three_prime_UTR |
| CGGGAAGTTGAACATTGGTA+GGG | 0.586332 | 4_3:+14858931 | None:intergenic |
| GTTGTCAGCGATGTTCATGA+GGG | 0.587796 | 4_3:+14858953 | None:intergenic |
| CCCCAAATGCCCAAAATGAG+AGG | 0.592582 | 4_3:+14859428 | None:intergenic |
| AGATGATTGTGCAAAATGAA+AGG | 0.592889 | 4_3:+14857546 | None:intergenic |
| GCAGACCTCAAAGGACAGAT+GGG | 0.592933 | 4_3:-14860190 | Msa0631680:CDS |
| GACAAGCTTGTCCATAAATG+CGG | 0.599740 | 4_3:+14859496 | None:intergenic |
| TGGAGCCATTAACATGGCAC+AGG | 0.599758 | 4_3:-14860989 | Msa0631680:intron |
| CACAAGGGGAAAGGGAAAGG+TGG | 0.605010 | 4_3:-14860127 | Msa0631680:CDS |
| GCTTACCGATTGACTGTCCA+GGG | 0.605055 | 4_3:+14858700 | None:intergenic |
| AGACTTGTGAATTCAAAAGA+GGG | 0.610232 | 4_3:-14858201 | Msa0631680:CDS |
| TAGTGAGTTCCAGCATCCGT+TGG | 0.612756 | 4_3:+14860087 | None:intergenic |
| AGAACAAGAGAATGTGAAGA+GGG | 0.613350 | 4_3:-14858109 | Msa0631680:CDS |
| TATGCTCCTTTAATTCGTGA+CGG | 0.617404 | 4_3:-14858840 | Msa0631680:CDS |
| AATTGTTGGAGCCATTAACA+TGG | 0.617506 | 4_3:-14860995 | Msa0631680:CDS |
| TGAGGAAAAGCAGACCTCAA+AGG | 0.617972 | 4_3:-14860199 | Msa0631680:CDS |
| GATATCCTGTTGGTCATCTG+AGG | 0.618471 | 4_3:+14860149 | None:intergenic |
| AAATTGAACGGCTCTAGCAG+TGG | 0.620869 | 4_3:-14860339 | Msa0631680:CDS |
| TTGGATATCTGGTATTGGCG+TGG | 0.621027 | 4_3:-14858238 | Msa0631680:CDS |
| CTGCAAAGTTGATTAGGCAA+AGG | 0.623429 | 4_3:-14859106 | Msa0631680:CDS |
| TGTATGCAGTTGAAATTGAA+CGG | 0.623551 | 4_3:-14860351 | Msa0631680:intron |
| GATAGAGTTGGTGTTTGTCA+AGG | 0.623978 | 4_3:-14858780 | Msa0631680:CDS |
| TGATTGTGCAAAATGAAAGG+AGG | 0.628397 | 4_3:+14857549 | None:intergenic |
| CCGACAGCCAGAAGTGACGA+TGG | 0.630990 | 4_3:-14857797 | Msa0631680:CDS |
| CCTACTCGTGATGATAGAGT+TGG | 0.631196 | 4_3:-14858792 | Msa0631680:CDS |
| GACCAACAGGATATCACAAG+GGG | 0.645088 | 4_3:-14860141 | Msa0631680:CDS |
| CATACCGGGAAGTTGAACAT+TGG | 0.657559 | 4_3:+14858926 | None:intergenic |
| ATACACAGTCAATAACCAGA+TGG | 0.667649 | 4_3:-14858985 | Msa0631680:CDS |
| CCAACTCTATCATCACGAGT+AGG | 0.670525 | 4_3:+14858792 | None:intergenic |
| ATGACCAACAGGATATCACA+AGG | 0.671981 | 4_3:-14860143 | Msa0631680:CDS |
| GCAGGAGCTGGTAGAATGGG+TGG | 0.672116 | 4_3:-14859017 | Msa0631680:CDS |
| TGAAGAAAGTTAAAGCTGAG+TGG | 0.675239 | 4_3:+14861179 | None:intergenic |
| AGTGCCGGAGAATTGGAAAG+CGG | 0.700816 | 4_3:-14859143 | Msa0631680:CDS |
| TGACCAACAGGATATCACAA+GGG | 0.701639 | 4_3:-14860142 | Msa0631680:CDS |
| CTCCAAGAGCTGCCTCACTG+AGG | 0.729949 | 4_3:+14858067 | None:intergenic |
| GATTAGGCAAAGGTACCGTG+AGG | 0.742836 | 4_3:-14859096 | Msa0631680:CDS |
| AGCTGACAAATACCTCAGTG+AGG | 0.750394 | 4_3:-14858079 | Msa0631680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTGAATTATTTTG+AGG | - | chr4_3:14858909-14858928 | Msa0631680:CDS | 10.0% |
| !! | TCCAATAACATATATTATAA+TGG | - | chr4_3:14857605-14857624 | Msa0631680:three_prime_UTR | 15.0% |
| !! | ACCATTATAATATATGTTAT+TGG | + | chr4_3:14857609-14857628 | None:intergenic | 15.0% |
| !! | TAATAGATATTTGTATCAAT+TGG | + | chr4_3:14858777-14858796 | None:intergenic | 15.0% |
| !!! | TACACAAAATTTTATCAAAA+AGG | + | chr4_3:14858854-14858873 | None:intergenic | 15.0% |
| !! | TGATATTCTATGTTATAATT+TGG | - | chr4_3:14858940-14858959 | Msa0631680:CDS | 15.0% |
| !! | TCATGGTTAATATAAATATA+AGG | + | chr4_3:14860269-14860288 | None:intergenic | 15.0% |
| !!! | TGTATATTTTGTTTTATTGA+TGG | - | chr4_3:14861007-14861026 | Msa0631680:CDS | 15.0% |
| !! | ACAAATAGATACATAATAGA+AGG | + | chr4_3:14857930-14857949 | None:intergenic | 20.0% |
| !! | AATCTTTGTTAACTGAATTA+AGG | + | chr4_3:14858634-14858653 | None:intergenic | 20.0% |
| !!! | ATGCTAATTGACTTATTTTT+AGG | - | chr4_3:14858698-14858717 | Msa0631680:intron | 20.0% |
| !!! | TTCCTGTATTATTTGATTTA+TGG | - | chr4_3:14858885-14858904 | Msa0631680:CDS | 20.0% |
| !!! | ATTTTGAATTATTTTGAGGT+TGG | - | chr4_3:14858913-14858932 | Msa0631680:CDS | 20.0% |
| !! | TTGAAACTTAGATTGATATA+TGG | + | chr4_3:14859961-14859980 | None:intergenic | 20.0% |
| !! | ATAAATATAAGGATCTTGTT+TGG | + | chr4_3:14860258-14860277 | None:intergenic | 20.0% |
| !!! | GTTTTCTTTGTAGATTTTTT+TGG | - | chr4_3:14860336-14860355 | Msa0631680:CDS | 20.0% |
| !! | GATAATAACAGAAAAATCAA+AGG | + | chr4_3:14860640-14860659 | None:intergenic | 20.0% |
| !! | AAACAATAAGATAACATTCT+TGG | + | chr4_3:14860740-14860759 | None:intergenic | 20.0% |
| !! | AAGAATGTTATCTTATTGTT+TGG | - | chr4_3:14860739-14860758 | Msa0631680:intron | 20.0% |
| ! | GAATATTAAGGAAGAAGAAA+TGG | + | chr4_3:14857558-14857577 | None:intergenic | 25.0% |
| ! | GGTAAGATTGTTGAATATTA+AGG | + | chr4_3:14857570-14857589 | None:intergenic | 25.0% |
| !! | ATGCTTTTCTTAACAAACTT+TGG | - | chr4_3:14857674-14857693 | Msa0631680:three_prime_UTR | 25.0% |
| ! | CTATTTGTATGAGTGTTAAT+AGG | - | chr4_3:14857942-14857961 | Msa0631680:intron | 25.0% |
| !! | GTTCCAATTTTCATTCAATT+TGG | - | chr4_3:14858222-14858241 | Msa0631680:CDS | 25.0% |
| ! | ACTCCAAATTGAATGAAAAT+TGG | + | chr4_3:14858228-14858247 | None:intergenic | 25.0% |
| !! | TTCATTCAATTTGGAGTTTA+TGG | - | chr4_3:14858231-14858250 | Msa0631680:CDS | 25.0% |
| ! | AAAAATGCTGAATTTGTCAT+AGG | + | chr4_3:14858327-14858346 | None:intergenic | 25.0% |
| !! | ATGACAAATTCAGCATTTTT+CGG | - | chr4_3:14858327-14858346 | Msa0631680:intron | 25.0% |
| ! | TTAAGGAAAAATGAACTTAC+TGG | + | chr4_3:14858617-14858636 | None:intergenic | 25.0% |
| !!! | TTGACTTATTTTTAGGTACA+TGG | - | chr4_3:14858705-14858724 | Msa0631680:intron | 25.0% |
| !!! | ATTTTTAGGTACATGGTTAT+CGG | - | chr4_3:14858712-14858731 | Msa0631680:CDS | 25.0% |
| ! | AGCCATAAATCAAATAATAC+AGG | + | chr4_3:14858890-14858909 | None:intergenic | 25.0% |
| !!! | TGACATTTTAATGTAAGAAC+AGG | + | chr4_3:14858974-14858993 | None:intergenic | 25.0% |
| ! | ATCAGGTAAATAAAAATGAC+AGG | - | chr4_3:14859286-14859305 | Msa0631680:intron | 25.0% |
| !!! | AAGCAAAATTTCTAGTTACT+AGG | - | chr4_3:14859979-14859998 | Msa0631680:intron | 25.0% |
| !!! | AGCAAAATTTCTAGTTACTA+GGG | - | chr4_3:14859980-14859999 | Msa0631680:intron | 25.0% |
| ! | AATAATCTGAAAACAGCTTA+CGG | + | chr4_3:14860083-14860102 | None:intergenic | 25.0% |
| ! | GTGAATAATCAAATGTTTGA+TGG | - | chr4_3:14860314-14860333 | Msa0631680:CDS | 25.0% |
| ! | CTTAAGAGAGTTCATAAATA+TGG | - | chr4_3:14860890-14860909 | Msa0631680:intron | 25.0% |
| !! | CATTCACCATATTTTATGTA+AGG | - | chr4_3:14860960-14860979 | Msa0631680:intron | 25.0% |
| ! | AATGCACCTTACATAAAATA+TGG | + | chr4_3:14860969-14860988 | None:intergenic | 25.0% |
| ! | ACAAAATATACAACCTAAAG+TGG | + | chr4_3:14860999-14861018 | None:intergenic | 25.0% |
| !! | AAGTTGAGTTGATAGAAAGA+GGG | + | chr4_3:14857510-14857529 | None:intergenic | 30.0% |
| !! | TAAGTTGAGTTGATAGAAAG+AGG | + | chr4_3:14857511-14857530 | None:intergenic | 30.0% |
| TCAACTTAATCCAATCACTT+TGG | - | chr4_3:14857523-14857542 | Msa0631680:three_prime_UTR | 30.0% | |
| !! | CAATCTTACCAAACTTGTTT+TGG | - | chr4_3:14857580-14857599 | Msa0631680:three_prime_UTR | 30.0% |
| ATTGGAAACCAAAACAAGTT+TGG | + | chr4_3:14857591-14857610 | None:intergenic | 30.0% | |
| AGGTGCATCATGTATATTAA+CGG | + | chr4_3:14857910-14857929 | None:intergenic | 30.0% | |
| ! | ATTCCAATCTTTTGATATCG+TGG | - | chr4_3:14858018-14858037 | Msa0631680:intron | 30.0% |
| AGTCATGGTTTCAAAAGAAA+AGG | + | chr4_3:14858146-14858165 | None:intergenic | 30.0% | |
| AATGAAAATTGGAACAGACT+CGG | + | chr4_3:14858217-14858236 | None:intergenic | 30.0% | |
| TTGGAGTTTATGGTTAATTG+AGG | - | chr4_3:14858241-14858260 | Msa0631680:CDS | 30.0% | |
| GGTTAATTGAGGACTAATAA+CGG | - | chr4_3:14858252-14858271 | Msa0631680:CDS | 30.0% | |
| TGTATGCAGTTGAAATTGAA+CGG | - | chr4_3:14858285-14858304 | Msa0631680:CDS | 30.0% | |
| GGCAAAAATTGACTATAATG+AGG | - | chr4_3:14858419-14858438 | Msa0631680:intron | 30.0% | |
| TCCTATGATTATATCAGTAC+CGG | - | chr4_3:14858585-14858604 | Msa0631680:intron | 30.0% | |
| AACAATCATCAGAATGAATC+GGG | + | chr4_3:14858823-14858842 | None:intergenic | 30.0% | |
| CAACAATCATCAGAATGAAT+CGG | + | chr4_3:14858824-14858843 | None:intergenic | 30.0% | |
| ATGAGAGGAATCTTGATATT+TGG | + | chr4_3:14859196-14859215 | None:intergenic | 30.0% | |
| ! | TATCAAGATTCCTCTCATTT+TGG | - | chr4_3:14859198-14859217 | Msa0631680:intron | 30.0% |
| ! | ATCAAGATTCCTCTCATTTT+GGG | - | chr4_3:14859199-14859218 | Msa0631680:intron | 30.0% |
| !! | CTTTCCTTTTCTGATAATGT+CGG | + | chr4_3:14859569-14859588 | None:intergenic | 30.0% |
| ACGCATGGAAAAATTCTATT+GGG | - | chr4_3:14859819-14859838 | Msa0631680:intron | 30.0% | |
| !! | AAATTTCTAGTTACTAGGGT+AGG | - | chr4_3:14859984-14860003 | Msa0631680:intron | 30.0% |
| CAAGTTTCAAACTCATATCA+TGG | + | chr4_3:14860286-14860305 | None:intergenic | 30.0% | |
| ! | CATGATATGAGTTTGAAACT+TGG | - | chr4_3:14860284-14860303 | Msa0631680:CDS | 30.0% |
| AAGACTTGTGAATTCAAAAG+AGG | - | chr4_3:14860434-14860453 | Msa0631680:intron | 30.0% | |
| AGACTTGTGAATTCAAAAGA+GGG | - | chr4_3:14860435-14860454 | Msa0631680:intron | 30.0% | |
| AATAATGATGCTATCAAGAC+TGG | - | chr4_3:14860597-14860616 | Msa0631680:intron | 30.0% | |
| ! | TATCACCTAAAAGTTTGCTT+TGG | - | chr4_3:14860669-14860688 | Msa0631680:intron | 30.0% |
| ! | TTGATCCAAAGCAAACTTTT+AGG | + | chr4_3:14860677-14860696 | None:intergenic | 30.0% |
| TTATCTTATTGTTTGGATGC+AGG | - | chr4_3:14860746-14860765 | Msa0631680:intron | 30.0% | |
| !!! | GTTTTATTGATGGTGTCTTA+TGG | - | chr4_3:14861017-14861036 | Msa0631680:exon | 30.0% |
| AGATGATTGTGCAAAATGAA+AGG | + | chr4_3:14861093-14861112 | None:intergenic | 30.0% | |
| ! | AGCTCTAATGAACACAAATT+TGG | + | chr4_3:14861118-14861137 | None:intergenic | 30.0% |
| ! | TAGCTGATTTACGTGATATA+TGG | - | chr4_3:14861137-14861156 | Msa0631680:five_prime_UTR | 30.0% |
| TGAAGAAAGTTAAAGCTGAG+TGG | + | chr4_3:14857460-14857479 | None:intergenic | 35.0% | |
| GAATTGAGTTCCAAAGTGAT+TGG | + | chr4_3:14857536-14857555 | None:intergenic | 35.0% | |
| GTAACTTCTGTGACAATTGT+TGG | - | chr4_3:14857627-14857646 | Msa0631680:three_prime_UTR | 35.0% | |
| AATTGTTGGAGCCATTAACA+TGG | - | chr4_3:14857641-14857660 | Msa0631680:three_prime_UTR | 35.0% | |
| CTAGATTAGCAGAAAGAGTT+TGG | - | chr4_3:14857828-14857847 | Msa0631680:CDS | 35.0% | |
| TCTCCACGATATCAAAAGAT+TGG | + | chr4_3:14858024-14858043 | None:intergenic | 35.0% | |
| GAGTTTGTCTGGTAACTTTA+AGG | - | chr4_3:14858392-14858411 | Msa0631680:intron | 35.0% | |
| !! | GTCTGGTAACTTTAAGGTTT+CGG | - | chr4_3:14858398-14858417 | Msa0631680:intron | 35.0% |
| !! | ACCGGTACTGATATAATCAT+AGG | + | chr4_3:14858589-14858608 | None:intergenic | 35.0% |
| TTCACGATTTGAATCTCGAT+TGG | - | chr4_3:14859066-14859085 | Msa0631680:CDS | 35.0% | |
| AATCTCGATTGGATATGTTC+AGG | - | chr4_3:14859077-14859096 | Msa0631680:CDS | 35.0% | |
| GGATATGTTCAGGTACAATA+TGG | - | chr4_3:14859087-14859106 | Msa0631680:CDS | 35.0% | |
| AATATGGACAACACAGTTGA+TGG | - | chr4_3:14859103-14859122 | Msa0631680:CDS | 35.0% | |
| TATTTACCTGATTCCCATCT+TGG | + | chr4_3:14859278-14859297 | None:intergenic | 35.0% | |
| GCAATGGAATTAAACTAACG+TGG | + | chr4_3:14859336-14859355 | None:intergenic | 35.0% | |
| TACACACACACTATGATACT+TGG | - | chr4_3:14859382-14859401 | Msa0631680:CDS | 35.0% | |
| AACTCTTTGATCTACTGCTT+TGG | - | chr4_3:14859449-14859468 | Msa0631680:CDS | 35.0% | |
| TTCATCAATGATCTTGATGC+AGG | - | chr4_3:14859601-14859620 | Msa0631680:intron | 35.0% | |
| ATACACAGTCAATAACCAGA+TGG | - | chr4_3:14859651-14859670 | Msa0631680:intron | 35.0% | |
| ! | TCTTCTTTGTTGTACATACC+GGG | + | chr4_3:14859727-14859746 | None:intergenic | 35.0% |
| ! | CTCTTCTTTGTTGTACATAC+CGG | + | chr4_3:14859728-14859747 | None:intergenic | 35.0% |
| TATGCTCCTTTAATTCGTGA+CGG | - | chr4_3:14859796-14859815 | Msa0631680:intron | 35.0% | |
| GACGCATGGAAAAATTCTAT+TGG | - | chr4_3:14859818-14859837 | Msa0631680:intron | 35.0% | |
| !! | GTGTTTGTCAAGGTATTTTC+AGG | - | chr4_3:14859866-14859885 | Msa0631680:intron | 35.0% |
| TCTTGACAATGTCATCCTTA+GGG | + | chr4_3:14859903-14859922 | None:intergenic | 35.0% | |
| ATCTTGACAATGTCATCCTT+AGG | + | chr4_3:14859904-14859923 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCA+TGG | + | chr4_3:14860117-14860136 | None:intergenic | 35.0% |
| !!! | TAGATTTTTTTGGTGCCTTG+AGG | - | chr4_3:14860346-14860365 | Msa0631680:intron | 35.0% |
| !!! | AGATTTTTTTGGTGCCTTGA+GGG | - | chr4_3:14860347-14860366 | Msa0631680:intron | 35.0% |
| AGGAATTGGATATCTGGTAT+TGG | - | chr4_3:14860393-14860412 | Msa0631680:intron | 35.0% | |
| TCTTCACATTCTCTTGTTCT+TGG | + | chr4_3:14860527-14860546 | None:intergenic | 35.0% | |
| AAGAACAAGAGAATGTGAAG+AGG | - | chr4_3:14860526-14860545 | Msa0631680:intron | 35.0% | |
| AGAACAAGAGAATGTGAAGA+GGG | - | chr4_3:14860527-14860546 | Msa0631680:intron | 35.0% | |
| ! | TGAGGTATTTGTCAGCTAAT+TGG | + | chr4_3:14860554-14860573 | None:intergenic | 35.0% |
| ATCAAGACTGGAAACTTCTA+TGG | - | chr4_3:14860609-14860628 | Msa0631680:intron | 35.0% | |
| ! | GATCATAGTTTTCTGCAGAA+GGG | + | chr4_3:14860820-14860839 | None:intergenic | 35.0% |
| TGCATTAATCTCACCACTTT+AGG | - | chr4_3:14860983-14861002 | Msa0631680:intron | 35.0% | |
| GACACTTATAGAAAGCAAGT+TGG | - | chr4_3:14861053-14861072 | Msa0631680:five_prime_UTR | 35.0% | |
| TGATTGTGCAAAATGAAAGG+AGG | + | chr4_3:14861090-14861109 | None:intergenic | 35.0% | |
| !! | TTGAGTTGATAGAAAGAGGG+AGG | + | chr4_3:14857507-14857526 | None:intergenic | 40.0% |
| TTGTACCTGTGCCATGTTAA+TGG | + | chr4_3:14857655-14857674 | None:intergenic | 40.0% | |
| GCACATCTTGGACATAAGAA+TGG | + | chr4_3:14857809-14857828 | None:intergenic | 40.0% | |
| TCTGCTAATCTAGCACATCT+TGG | + | chr4_3:14857821-14857840 | None:intergenic | 40.0% | |
| GATTTGAACTCTATCCCTTG+AGG | + | chr4_3:14857862-14857881 | None:intergenic | 40.0% | |
| AAAGGTTTGCAGCTGCAATT+TGG | + | chr4_3:14858128-14858147 | None:intergenic | 40.0% | |
| AGACTACAGACTTAGAGTCA+TGG | + | chr4_3:14858161-14858180 | None:intergenic | 40.0% | |
| !! | TCGCAGAACTAGCTTTCTTA+AGG | + | chr4_3:14858359-14858378 | None:intergenic | 40.0% |
| AGTTACCAGACAAACTCTTC+TGG | + | chr4_3:14858389-14858408 | None:intergenic | 40.0% | |
| ATGACCAACAGGATATCACA+AGG | - | chr4_3:14858493-14858512 | Msa0631680:intron | 40.0% | |
| TGACCAACAGGATATCACAA+GGG | - | chr4_3:14858494-14858513 | Msa0631680:intron | 40.0% | |
| TAAATGCGGGTGCAATATAC+AGG | + | chr4_3:14859129-14859148 | None:intergenic | 40.0% | |
| GTATATTGCACCCGCATTTA+TGG | - | chr4_3:14859129-14859148 | Msa0631680:CDS | 40.0% | |
| ACAAGCTTGTCCATAAATGC+GGG | + | chr4_3:14859142-14859161 | None:intergenic | 40.0% | |
| GACAAGCTTGTCCATAAATG+CGG | + | chr4_3:14859143-14859162 | None:intergenic | 40.0% | |
| ! | TTCCTCTCATTTTGGGCATT+TGG | - | chr4_3:14859206-14859225 | Msa0631680:intron | 40.0% |
| ! | TCCTCTCATTTTGGGCATTT+GGG | - | chr4_3:14859207-14859226 | Msa0631680:intron | 40.0% |
| CACACTATGATACTTGGCTT+AGG | - | chr4_3:14859388-14859407 | Msa0631680:CDS | 40.0% | |
| ATGATACTTGGCTTAGGCTT+AGG | - | chr4_3:14859394-14859413 | Msa0631680:CDS | 40.0% | |
| ATTTCCGCTTTCCAATTCTC+CGG | + | chr4_3:14859500-14859519 | None:intergenic | 40.0% | |
| CTTTGCCTAATCAACTTTGC+AGG | + | chr4_3:14859532-14859551 | None:intergenic | 40.0% | |
| ! | CTGCAAAGTTGATTAGGCAA+AGG | - | chr4_3:14859530-14859549 | Msa0631680:CDS | 40.0% |
| TCATTTCCAGTGACGATGAT+AGG | + | chr4_3:14859763-14859782 | None:intergenic | 40.0% | |
| !! | GATAGAGTTGGTGTTTGTCA+AGG | - | chr4_3:14859856-14859875 | Msa0631680:intron | 40.0% |
| !! | CAAGGTATTTTCAGGACAGA+TGG | - | chr4_3:14859874-14859893 | Msa0631680:intron | 40.0% |
| ! | CTCATCTGAGACTGTGTTTA+AGG | - | chr4_3:14860031-14860050 | Msa0631680:intron | 40.0% |
| ATGACGATGAAGTCAGGAAT+TGG | - | chr4_3:14860379-14860398 | Msa0631680:intron | 40.0% | |
| GAAGTCAGGAATTGGATATC+TGG | - | chr4_3:14860387-14860406 | Msa0631680:intron | 40.0% | |
| ATCTTTGGTTGCTCGAAAGT+TGG | + | chr4_3:14860465-14860484 | None:intergenic | 40.0% | |
| AGCTTGTCAAGAGTCATCTT+TGG | + | chr4_3:14860480-14860499 | None:intergenic | 40.0% | |
| CTTGACAAGCTACTAGAGTA+TGG | - | chr4_3:14860489-14860508 | Msa0631680:intron | 40.0% | |
| GATCAACAAATATGTCGCGT+CGG | - | chr4_3:14860691-14860710 | Msa0631680:intron | 40.0% | |
| TATTGTTTGGATGCAGGACA+AGG | - | chr4_3:14860752-14860771 | Msa0631680:intron | 40.0% | |
| ! | GGATCATAGTTTTCTGCAGA+AGG | + | chr4_3:14860821-14860840 | None:intergenic | 40.0% |
| GGATAGAGTTCAAATCCCCT+CGG | - | chr4_3:14857866-14857885 | Msa0631680:CDS | 45.0% | |
| GATAGAGTTCAAATCCCCTC+GGG | - | chr4_3:14857867-14857886 | Msa0631680:CDS | 45.0% | |
| ATAGAGTTCAAATCCCCTCG+GGG | - | chr4_3:14857868-14857887 | Msa0631680:CDS | 45.0% | |
| ! | AAATTGAACGGCTCTAGCAG+TGG | - | chr4_3:14858297-14858316 | Msa0631680:intron | 45.0% |
| TGAGGAAAAGCAGACCTCAA+AGG | - | chr4_3:14858437-14858456 | Msa0631680:intron | 45.0% | |
| GATATCCTGTTGGTCATCTG+AGG | + | chr4_3:14858490-14858509 | None:intergenic | 45.0% | |
| GACCAACAGGATATCACAAG+GGG | - | chr4_3:14858495-14858514 | Msa0631680:intron | 45.0% | |
| TTCCCCTTGTGATATCCTGT+TGG | + | chr4_3:14858500-14858519 | None:intergenic | 45.0% | |
| ACAGGATATCACAAGGGGAA+AGG | - | chr4_3:14858500-14858519 | Msa0631680:intron | 45.0% | |
| CAGGATATCACAAGGGGAAA+GGG | - | chr4_3:14858501-14858520 | Msa0631680:intron | 45.0% | |
| TATCACAAGGGGAAAGGGAA+AGG | - | chr4_3:14858506-14858525 | Msa0631680:intron | 45.0% | |
| CAGTGTCTTTCAAGCTCCAA+CGG | - | chr4_3:14858533-14858552 | Msa0631680:intron | 45.0% | |
| ATGAACTTACTGGCGAAGAC+CGG | + | chr4_3:14858607-14858626 | None:intergenic | 45.0% | |
| ! | CCTCTCATTTTGGGCATTTG+GGG | - | chr4_3:14859208-14859227 | Msa0631680:intron | 45.0% |
| GAGCTTGTCTTTGCCAAGAT+GGG | - | chr4_3:14859262-14859281 | Msa0631680:intron | 45.0% | |
| TCTTTGCCAAGATGGGAATC+AGG | - | chr4_3:14859269-14859288 | Msa0631680:intron | 45.0% | |
| AGCCCTATAATGATGAGTGC+CGG | - | chr4_3:14859478-14859497 | Msa0631680:CDS | 45.0% | |
| CTCCGGCACTCATCATTATA+GGG | + | chr4_3:14859483-14859502 | None:intergenic | 45.0% | |
| TCTCCGGCACTCATCATTAT+AGG | + | chr4_3:14859484-14859503 | None:intergenic | 45.0% | |
| !! | AATGATGAGTGCCGGAGAAT+TGG | - | chr4_3:14859486-14859505 | Msa0631680:CDS | 45.0% |
| GAATTGGAAAGCGGAAATGC+AGG | - | chr4_3:14859502-14859521 | Msa0631680:CDS | 45.0% | |
| ! | GAGAGCCTGCAAAGTTGATT+AGG | - | chr4_3:14859524-14859543 | Msa0631680:CDS | 45.0% |
| GCGTCCGACATTATCAGAAA+AGG | - | chr4_3:14859562-14859581 | Msa0631680:intron | 45.0% | |
| AATGATCTTGATGCAGGAGC+TGG | - | chr4_3:14859607-14859626 | Msa0631680:intron | 45.0% | |
| TGAGGGTTGCATTTACCATC+TGG | + | chr4_3:14859669-14859688 | None:intergenic | 45.0% | |
| GTTGTCAGCGATGTTCATGA+GGG | + | chr4_3:14859686-14859705 | None:intergenic | 45.0% | |
| CGGGAAGTTGAACATTGGTA+GGG | + | chr4_3:14859708-14859727 | None:intergenic | 45.0% | |
| CCTACCAATGTTCAACTTCC+CGG | - | chr4_3:14859706-14859725 | Msa0631680:intron | 45.0% | |
| CATACCGGGAAGTTGAACAT+TGG | + | chr4_3:14859713-14859732 | None:intergenic | 45.0% | |
| ATGCGTCCGTCACGAATTAA+AGG | + | chr4_3:14859805-14859824 | None:intergenic | 45.0% | |
| !! | TTTAATTCGTGACGGACGCA+TGG | - | chr4_3:14859804-14859823 | Msa0631680:intron | 45.0% |
| CCAACTCTATCATCACGAGT+AGG | + | chr4_3:14859847-14859866 | None:intergenic | 45.0% | |
| CCTACTCGTGATGATAGAGT+TGG | - | chr4_3:14859844-14859863 | Msa0631680:intron | 45.0% | |
| AAGATTGTCGACACATTCCC+TGG | - | chr4_3:14859919-14859938 | Msa0631680:intron | 45.0% | |
| ACATTCCCTGGACAGTCAAT+CGG | - | chr4_3:14859931-14859950 | Msa0631680:intron | 45.0% | |
| GAGTGTATGACGATGAAGTC+AGG | - | chr4_3:14860373-14860392 | Msa0631680:intron | 45.0% | |
| !! | TTGGATATCTGGTATTGGCG+TGG | - | chr4_3:14860398-14860417 | Msa0631680:intron | 45.0% |
| TTTGGTTGCTCGAAAGTTGG+AGG | + | chr4_3:14860462-14860481 | None:intergenic | 45.0% | |
| AGCTGACAAATACCTCAGTG+AGG | - | chr4_3:14860557-14860576 | Msa0631680:intron | 45.0% | |
| CGTCGGTCTTGACAATAACT+TGG | - | chr4_3:14860708-14860727 | Msa0631680:intron | 45.0% | |
| !! | AATATATACATAAAAAAAAT+TGG | - | chr4_3:14857783-14857802 | Msa0631680:CDS | 5.0% |
| GATAGAAAGAGGGAGGTGAG+AGG | + | chr4_3:14857500-14857519 | None:intergenic | 50.0% | |
| TGGAGCCATTAACATGGCAC+AGG | - | chr4_3:14857647-14857666 | Msa0631680:three_prime_UTR | 50.0% | |
| AGTTTGGTCATGCAGCCTCA+AGG | - | chr4_3:14857844-14857863 | Msa0631680:CDS | 50.0% | |
| GTTTGGTCATGCAGCCTCAA+GGG | - | chr4_3:14857845-14857864 | Msa0631680:CDS | 50.0% | |
| ! | ATTTTACTACCGTGCCCCGA+GGG | + | chr4_3:14857885-14857904 | None:intergenic | 50.0% |
| ! | TATTTTACTACCGTGCCCCG+AGG | + | chr4_3:14857886-14857905 | None:intergenic | 50.0% |
| TCCAGCCAGAAGAGTTTGTC+TGG | - | chr4_3:14858381-14858400 | Msa0631680:intron | 50.0% | |
| ACCAGACAAACTCTTCTGGC+TGG | + | chr4_3:14858385-14858404 | None:intergenic | 50.0% | |
| AGCAGACCTCAAAGGACAGA+TGG | - | chr4_3:14858445-14858464 | Msa0631680:intron | 50.0% | |
| GCAGACCTCAAAGGACAGAT+GGG | - | chr4_3:14858446-14858465 | Msa0631680:intron | 50.0% | |
| TGACACCTCAGATGACCAAC+AGG | - | chr4_3:14858482-14858501 | Msa0631680:intron | 50.0% | |
| TTTCAAGCTCCAACGGATGC+TGG | - | chr4_3:14858540-14858559 | Msa0631680:intron | 50.0% | |
| TAGTGAGTTCCAGCATCCGT+TGG | + | chr4_3:14858552-14858571 | None:intergenic | 50.0% | |
| CCCCAAATGCCCAAAATGAG+AGG | + | chr4_3:14859211-14859230 | None:intergenic | 50.0% | |
| ! | CTCATTTTGGGCATTTGGGG+AGG | - | chr4_3:14859211-14859230 | Msa0631680:intron | 50.0% |
| ATTTGGGGAGGCAAAGGTCA+AGG | - | chr4_3:14859223-14859242 | Msa0631680:intron | 50.0% | |
| CGAGCTTGTCTTTGCCAAGA+TGG | - | chr4_3:14859261-14859280 | Msa0631680:intron | 50.0% | |
| ! | AGTGCCGGAGAATTGGAAAG+CGG | - | chr4_3:14859493-14859512 | Msa0631680:CDS | 50.0% |
| !! | GATTAGGCAAAGGTACCGTG+AGG | - | chr4_3:14859540-14859559 | Msa0631680:CDS | 50.0% |
| ! | TGATAATGTCGGACGCCTCA+CGG | + | chr4_3:14859558-14859577 | None:intergenic | 50.0% |
| TGATGCAGGAGCTGGTAGAA+TGG | - | chr4_3:14859615-14859634 | Msa0631680:intron | 50.0% | |
| GATGCAGGAGCTGGTAGAAT+GGG | - | chr4_3:14859616-14859635 | Msa0631680:intron | 50.0% | |
| GGTTGTCAGCGATGTTCATG+AGG | + | chr4_3:14859687-14859706 | None:intergenic | 50.0% | |
| CCGGGAAGTTGAACATTGGT+AGG | + | chr4_3:14859709-14859728 | None:intergenic | 50.0% | |
| ! | GCTTACCGATTGACTGTCCA+GGG | + | chr4_3:14859939-14859958 | None:intergenic | 50.0% |
| GTCATACACTCTAGCCCTCA+AGG | + | chr4_3:14860364-14860383 | None:intergenic | 50.0% | |
| !! | GGTATTGGCGTGGAGAGTAT+TGG | - | chr4_3:14860408-14860427 | Msa0631680:intron | 50.0% |
| GTTCCTTTACCTGTCCCAGA+AGG | - | chr4_3:14860785-14860804 | Msa0631680:intron | 50.0% | |
| !! | CAACCTTCTGGGACAGGTAA+AGG | + | chr4_3:14860791-14860810 | None:intergenic | 50.0% |
| GCAACTTCCATCGTCACTTC+TGG | + | chr4_3:14860849-14860868 | None:intergenic | 50.0% | |
| ! | TTTTACTACCGTGCCCCGAG+GGG | + | chr4_3:14857884-14857903 | None:intergenic | 55.0% |
| TCACAACTTGGACGCGGTTG+AGG | + | chr4_3:14858073-14858092 | None:intergenic | 55.0% | |
| ATGTCTCCGCGCTCACAACT+TGG | + | chr4_3:14858085-14858104 | None:intergenic | 55.0% | |
| ACCTCAAAGGACAGATGGGC+TGG | - | chr4_3:14858450-14858469 | Msa0631680:intron | 55.0% | |
| TCCAGCCCATCTGTCCTTTG+AGG | + | chr4_3:14858454-14858473 | None:intergenic | 55.0% | |
| CACAAGGGGAAAGGGAAAGG+TGG | - | chr4_3:14858509-14858528 | Msa0631680:intron | 55.0% | |
| TTGGGCATTTGGGGAGGCAA+AGG | - | chr4_3:14859217-14859236 | Msa0631680:intron | 55.0% | |
| CACGCGTGTGTGTAACGCAA+TGG | + | chr4_3:14859352-14859371 | None:intergenic | 55.0% | |
| CAGGACAGATGGTGTCCCTA+AGG | - | chr4_3:14859885-14859904 | Msa0631680:intron | 55.0% | |
| ! | GGCTTACCGATTGACTGTCC+AGG | + | chr4_3:14859940-14859959 | None:intergenic | 55.0% |
| TACCTCAGTGAGGCAGCTCT+TGG | - | chr4_3:14860567-14860586 | Msa0631680:intron | 55.0% | |
| AAGGGTCAGCGCAACCTTCT+GGG | + | chr4_3:14860802-14860821 | None:intergenic | 55.0% | |
| ! | CCATCGTCACTTCTGGCTGT+CGG | + | chr4_3:14860842-14860861 | None:intergenic | 55.0% |
| GTTCAAATCCCCTCGGGGCA+CGG | - | chr4_3:14857873-14857892 | Msa0631680:intron | 60.0% | |
| GCAGGAGCTGGTAGAATGGG+TGG | - | chr4_3:14859619-14859638 | Msa0631680:intron | 60.0% | |
| CGCGTGCCTATCATCGTCAC+TGG | - | chr4_3:14859754-14859773 | Msa0631680:intron | 60.0% | |
| CTCCAAGAGCTGCCTCACTG+AGG | + | chr4_3:14860572-14860591 | None:intergenic | 60.0% | |
| !! | TCAGCGCAACCTTCTGGGAC+AGG | + | chr4_3:14860797-14860816 | None:intergenic | 60.0% |
| GAAGGGTCAGCGCAACCTTC+TGG | + | chr4_3:14860803-14860822 | None:intergenic | 60.0% | |
| CCGACAGCCAGAAGTGACGA+TGG | - | chr4_3:14860839-14860858 | Msa0631680:intron | 60.0% | |
| CCGCGCTCACAACTTGGACG+CGG | + | chr4_3:14858079-14858098 | None:intergenic | 65.0% | |
| CCGCGTCCAAGTTGTGAGCG+CGG | - | chr4_3:14858076-14858095 | Msa0631680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 14857449 | 14861209 | 14857449 | ID=Msa0631680;Name=Msa0631680 |
| chr4_3 | mRNA | 14857449 | 14861209 | 14857449 | ID=Msa0631680-mRNA-1;Parent=Msa0631680;Name=Msa0631680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=175|1|1|1|1|1|6|326|476 |
| chr4_3 | exon | 14857449 | 14857890 | 14857449 | ID=Msa0631680-mRNA-1:exon:4181;Parent=Msa0631680-mRNA-1 |
| chr4_3 | exon | 14858028 | 14858309 | 14858028 | ID=Msa0631680-mRNA-1:exon:4180;Parent=Msa0631680-mRNA-1 |
| chr4_3 | exon | 14858706 | 14859178 | 14858706 | ID=Msa0631680-mRNA-1:exon:4179;Parent=Msa0631680-mRNA-1 |
| chr4_3 | exon | 14859368 | 14859559 | 14859368 | ID=Msa0631680-mRNA-1:exon:4178;Parent=Msa0631680-mRNA-1 |
| chr4_3 | exon | 14860042 | 14860364 | 14860042 | ID=Msa0631680-mRNA-1:exon:4177;Parent=Msa0631680-mRNA-1 |
| chr4_3 | exon | 14860990 | 14861209 | 14860990 | ID=Msa0631680-mRNA-1:exon:4176;Parent=Msa0631680-mRNA-1 |
| chr4_3 | five_prime_UTR | 14861035 | 14861209 | 14861035 | ID=Msa0631680-mRNA-1:five_prime_utr;Parent=Msa0631680-mRNA-1 |
| chr4_3 | CDS | 14860990 | 14861034 | 14860990 | ID=Msa0631680-mRNA-1:cds;Parent=Msa0631680-mRNA-1 |
| chr4_3 | CDS | 14860042 | 14860364 | 14860042 | ID=Msa0631680-mRNA-1:cds;Parent=Msa0631680-mRNA-1 |
| chr4_3 | CDS | 14859368 | 14859559 | 14859368 | ID=Msa0631680-mRNA-1:cds;Parent=Msa0631680-mRNA-1 |
| chr4_3 | CDS | 14858706 | 14859178 | 14858706 | ID=Msa0631680-mRNA-1:cds;Parent=Msa0631680-mRNA-1 |
| chr4_3 | CDS | 14858028 | 14858309 | 14858028 | ID=Msa0631680-mRNA-1:cds;Parent=Msa0631680-mRNA-1 |
| chr4_3 | CDS | 14857775 | 14857890 | 14857775 | ID=Msa0631680-mRNA-1:cds;Parent=Msa0631680-mRNA-1 |
| chr4_3 | three_prime_UTR | 14857449 | 14857774 | 14857449 | ID=Msa0631680-mRNA-1:three_prime_utr;Parent=Msa0631680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
