Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671460 | XP_003611722.1 | 71.765 | 170 | 40 | 3 | 86 | 255 | 15 | 176 | 1.08e-77 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671460 | sp|Q9Z1D1|EIF3G_MOUSE | 32.727 | 110 | 73 | 1 | 145 | 254 | 211 | 319 | 3.54e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671460 | G7K6M3 | 71.765 | 170 | 40 | 3 | 86 | 255 | 15 | 176 | 5.15e-78 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa0671460 | 0.800004 | 1.766111e-48 | -8.615850e-47 |
| Msa0106370 | Msa0671460 | 0.805672 | 1.192337e-49 | -8.615850e-47 |
| Msa0616560 | Msa0671460 | 0.808381 | 3.185541e-50 | -8.615850e-47 |
| Msa0655990 | Msa0671460 | 0.815369 | 9.578365e-52 | -8.615850e-47 |
| Msa0671460 | Msa0699920 | 0.817301 | 3.539695e-52 | -8.615850e-47 |
| Msa0671460 | Msa0719490 | 0.823529 | 1.318511e-53 | -8.615850e-47 |
| Msa0585000 | Msa0671460 | 0.801963 | 7.025599e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671460 | MtrunA17_Chr5g0402101 | 58.373 | 209 | 40 | 4 | 86 | 255 | 15 | 215 | 1.13e-73 | 223 |
| Msa0671460 | MtrunA17_Chr8g0393061 | 50.450 | 111 | 52 | 2 | 145 | 255 | 185 | 292 | 4.46e-27 | 105 |
| Msa0671460 | MtrunA17_Chr8g0349601 | 46.789 | 109 | 55 | 2 | 147 | 255 | 175 | 280 | 1.69e-23 | 96.3 |
| Msa0671460 | MtrunA17_Chr2g0278661 | 35.714 | 84 | 54 | 0 | 172 | 255 | 5 | 88 | 7.07e-11 | 60.8 |
| Msa0671460 | MtrunA17_Chr3g0116631 | 39.744 | 78 | 47 | 0 | 175 | 252 | 110 | 187 | 8.58e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0671460 | AT3G11400.1 | 44.954 | 109 | 58 | 1 | 147 | 255 | 188 | 294 | 2.83e-24 | 99.0 |
| Msa0671460 | AT3G11400.2 | 44.954 | 109 | 58 | 1 | 147 | 255 | 215 | 321 | 5.71e-24 | 98.6 |
| Msa0671460 | AT5G06000.1 | 43.519 | 108 | 59 | 1 | 147 | 254 | 181 | 286 | 3.59e-23 | 96.3 |
Find 80 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTAATCACCAAGTTTC+AGG | 0.233945 | 4_4:+14830286 | Msa0671460:CDS |
| TGGAAAAGCTGAAGCAAATC+AGG | 0.330156 | 4_4:-14831183 | None:intergenic |
| TCCGACTGTAGTGCCCGTTT+TGG | 0.339488 | 4_4:+14831252 | Msa0671460:CDS |
| ACAGTATGACCAGAACTTCT+TGG | 0.347358 | 4_4:-14830988 | None:intergenic |
| GAAAACAAAAGCAGAAGGTT+TGG | 0.364194 | 4_4:-14830324 | None:intergenic |
| TTCCCTCGTCCAAGAAGTTC+TGG | 0.373659 | 4_4:+14830979 | Msa0671460:CDS |
| CCTATAATTAGGTTGTTGTT+GGG | 0.373881 | 4_4:-14831374 | None:intergenic |
| GGGATCACGGACATGAGGTT+TGG | 0.385351 | 4_4:-14830755 | None:intergenic |
| AACCCTGGTCTCCTTATGTT+CGG | 0.388397 | 4_4:+14830682 | Msa0671460:CDS |
| CTTCTTCTTGTTGTTGTCAT+CGG | 0.390135 | 4_4:-14831112 | None:intergenic |
| CCGTAATACCCATGTCTTTG+TGG | 0.404244 | 4_4:-14830720 | None:intergenic |
| GCCTATAATTAGGTTGTTGT+TGG | 0.409758 | 4_4:-14831375 | None:intergenic |
| GATTATATACCTCCGATTGC+GGG | 0.409992 | 4_4:+14831033 | Msa0671460:CDS |
| ACCCTGGTCTCCTTATGTTC+GGG | 0.420175 | 4_4:+14830683 | Msa0671460:CDS |
| TCTCTTCCACAAAAGCCTTC+AGG | 0.423566 | 4_4:-14831074 | None:intergenic |
| CCACAAAGACATGGGTATTA+CGG | 0.427307 | 4_4:+14830720 | Msa0671460:CDS |
| GGATCACGGACATGAGGTTT+GGG | 0.427540 | 4_4:-14830754 | None:intergenic |
| CAAAGTTAACAAAGCCAAAA+CGG | 0.447858 | 4_4:-14831266 | None:intergenic |
| TCAGGGTTCCTTGTCTCGTA+TGG | 0.453549 | 4_4:-14831165 | None:intergenic |
| ATTTCGTACTTAGAGTTGAA+TGG | 0.463424 | 4_4:+14831346 | Msa0671460:CDS |
| CATAGCTGTCCCCGAACATA+AGG | 0.468409 | 4_4:-14830693 | None:intergenic |
| CCCTGCCTGGAGATGACTAC+CGG | 0.474514 | 4_4:+14830640 | Msa0671460:CDS |
| TTTGTGGAAGAGATGACTAC+TGG | 0.476287 | 4_4:+14831084 | Msa0671460:CDS |
| TTTCTTCTCCGATCGAAGCT+TGG | 0.477808 | 4_4:+14830230 | Msa0671460:five_prime_UTR |
| GGTACAAACATACCCGTAAG+AGG | 0.480271 | 4_4:-14830616 | None:intergenic |
| TATGTTTGTACCTCCCTGCC+TGG | 0.488397 | 4_4:+14830627 | Msa0671460:CDS |
| AAAGTTAACAAAGCCAAAAC+GGG | 0.488552 | 4_4:-14831265 | None:intergenic |
| TCCACAAAAGCCTTCAGGTA+TGG | 0.489000 | 4_4:-14831069 | None:intergenic |
| TAATTAGGTTGTTGTTGGGG+AGG | 0.497133 | 4_4:-14831370 | None:intergenic |
| CCCGGTAGTCATCTCCAGGC+AGG | 0.500095 | 4_4:-14830641 | None:intergenic |
| AGCACTCTGAGCAGCTTCCC+TGG | 0.503852 | 4_4:-14831292 | None:intergenic |
| ACCAGGGTTCTTCTTGTCAT+CGG | 0.504220 | 4_4:-14830668 | None:intergenic |
| CTTCTTGTCATCGGATGACC+CGG | 0.509880 | 4_4:-14830659 | None:intergenic |
| AGAGACGTCTTCCTGAAACT+TGG | 0.515997 | 4_4:-14830297 | None:intergenic |
| AGTGCTATTGAAAGACTCAA+TGG | 0.521129 | 4_4:+14831309 | Msa0671460:CDS |
| AATTAGGTTGTTGTTGGGGA+GGG | 0.525602 | 4_4:-14831369 | None:intergenic |
| GCTTTGTTAACTTTGCCACC+AGG | 0.528180 | 4_4:+14831274 | Msa0671460:CDS |
| GGTACAAACATACCCGCAAT+CGG | 0.539291 | 4_4:-14831045 | None:intergenic |
| TAATGACATGACCAAAAGAC+TGG | 0.543219 | 4_4:-14831203 | None:intergenic |
| ATGACCCGGTAGTCATCTCC+AGG | 0.543487 | 4_4:-14830645 | None:intergenic |
| GTGCTATTGAAAGACTCAAT+GGG | 0.549024 | 4_4:+14831310 | Msa0671460:CDS |
| TCCCCGAACATAAGGAGACC+AGG | 0.551220 | 4_4:-14830685 | None:intergenic |
| GCATCTTTCCAAGCTTCGAT+CGG | 0.560702 | 4_4:-14830238 | None:intergenic |
| CTCATGTCCGTGATCCCTCA+TGG | 0.563988 | 4_4:+14830761 | Msa0671460:CDS |
| TACAAACATACCCGTAAGAG+GGG | 0.564254 | 4_4:-14830614 | None:intergenic |
| CAACTCTAAGTACGAAATTG+TGG | 0.564273 | 4_4:-14831341 | None:intergenic |
| CAGGGTTCCTTGTCTCGTAT+GGG | 0.564470 | 4_4:-14831164 | None:intergenic |
| CTATAATTAGGTTGTTGTTG+GGG | 0.564740 | 4_4:-14831373 | None:intergenic |
| TGATTATATACCTCCGATTG+CGG | 0.569351 | 4_4:+14831032 | Msa0671460:CDS |
| GCCAAAACGGGCACTACAGT+CGG | 0.575329 | 4_4:-14831253 | None:intergenic |
| CTGTAGAAAACAAAAGCAGA+AGG | 0.584130 | 4_4:-14830329 | None:intergenic |
| GACCAGAACTTCTTGGACGA+GGG | 0.585843 | 4_4:-14830981 | None:intergenic |
| CTTTGTTAACTTTGCCACCA+GGG | 0.593347 | 4_4:+14831275 | Msa0671460:CDS |
| GTTTGTACCTCCATACCTGA+AGG | 0.596305 | 4_4:+14831059 | Msa0671460:CDS |
| CTATGCCGTCCACAAAGACA+TGG | 0.597462 | 4_4:+14830711 | Msa0671460:CDS |
| GGTTCCTTGTCTCGTATGGG+AGG | 0.604191 | 4_4:-14831161 | None:intergenic |
| AATACCCATGTCTTTGTGGA+CGG | 0.607168 | 4_4:-14830716 | None:intergenic |
| CAAACCACCATGAGGGATCA+CGG | 0.607638 | 4_4:-14830768 | None:intergenic |
| GCAACCTCCCATACGAGACA+AGG | 0.608270 | 4_4:+14831157 | Msa0671460:CDS |
| CCGGTAGTCATCTCCAGGCA+GGG | 0.612399 | 4_4:-14830640 | None:intergenic |
| TGACCAGAACTTCTTGGACG+AGG | 0.614280 | 4_4:-14830982 | None:intergenic |
| GTACAAACATACCCGTAAGA+GGG | 0.619660 | 4_4:-14830615 | None:intergenic |
| GGAAAAGCTGAAGCAAATCA+GGG | 0.624618 | 4_4:-14831182 | None:intergenic |
| TCCGATGACAAGAAGAACCC+TGG | 0.624906 | 4_4:+14830667 | Msa0671460:CDS |
| AAATCAACGCTGTCTTCACA+CGG | 0.630721 | 4_4:-14830263 | None:intergenic |
| ACAAAAGCCTTCAGGTATGG+AGG | 0.634993 | 4_4:-14831066 | None:intergenic |
| CCTGCCTGGAGATGACTACC+GGG | 0.635772 | 4_4:+14830641 | Msa0671460:CDS |
| CATGAGGGATCACGGACATG+AGG | 0.644139 | 4_4:-14830760 | None:intergenic |
| CCCTGGTCTCCTTATGTTCG+GGG | 0.656122 | 4_4:+14830684 | Msa0671460:CDS |
| TCGTATGCAAACCACCATGA+GGG | 0.660128 | 4_4:-14830775 | None:intergenic |
| GTCGTATGCAAACCACCATG+AGG | 0.672918 | 4_4:-14830776 | None:intergenic |
| TATGCCGTCCACAAAGACAT+GGG | 0.675272 | 4_4:+14830712 | Msa0671460:CDS |
| CCCCGAACATAAGGAGACCA+GGG | 0.675630 | 4_4:-14830684 | None:intergenic |
| GTCTGCAGGTTTCGGCAACG+AGG | 0.681250 | 4_4:+14830942 | Msa0671460:intron |
| ACAAACATACCCGCAATCGG+AGG | 0.683927 | 4_4:-14831042 | None:intergenic |
| ATGTCCGTGATCCCTCATGG+TGG | 0.691434 | 4_4:+14830764 | Msa0671460:CDS |
| ACAAACATACCCGTAAGAGG+GGG | 0.722614 | 4_4:-14830613 | None:intergenic |
| ACTCTGAGCAGCTTCCCTGG+TGG | 0.730878 | 4_4:-14831289 | None:intergenic |
| GTAGTCATCTCCAGGCAGGG+AGG | 0.745865 | 4_4:-14830637 | None:intergenic |
| TCAACGCTGTCTTCACACGG+TGG | 0.749721 | 4_4:-14830260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAATAAATTATAT+TGG | - | chr4_4:14830841-14830860 | None:intergenic | 0.0% |
| !! | AATAAAAAAATAAATTATAT+TGG | - | chr4_4:14830841-14830860 | None:intergenic | 0.0% |
| !!! | TATGTTTTGAAATTTACTAA+AGG | - | chr4_4:14830482-14830501 | None:intergenic | 15.0% |
| !!! | TATGTTTTGAAATTTACTAA+AGG | - | chr4_4:14830482-14830501 | None:intergenic | 15.0% |
| !!! | TATATTTAGAGCAGTTAATA+TGG | + | chr4_4:14830864-14830883 | Msa0671460:intron | 20.0% |
| !!! | ATATTTAGAGCAGTTAATAT+GGG | + | chr4_4:14830865-14830884 | Msa0671460:intron | 20.0% |
| !! | ATATAATCAATACGAAAAAG+TGG | - | chr4_4:14831021-14831040 | None:intergenic | 20.0% |
| !!! | TATATTTAGAGCAGTTAATA+TGG | + | chr4_4:14830864-14830883 | Msa0671460:intron | 20.0% |
| !!! | ATATTTAGAGCAGTTAATAT+GGG | + | chr4_4:14830865-14830884 | Msa0671460:intron | 20.0% |
| !! | ATATAATCAATACGAAAAAG+TGG | - | chr4_4:14831021-14831040 | None:intergenic | 20.0% |
| ! | ATAATAGAAAAACAGGAAAG+CGG | - | chr4_4:14830367-14830386 | None:intergenic | 25.0% |
| ! | ATTGGAGATAATAGAAAAAC+AGG | - | chr4_4:14830374-14830393 | None:intergenic | 25.0% |
| ! | ATAATAGAAAAACAGGAAAG+CGG | - | chr4_4:14830367-14830386 | None:intergenic | 25.0% |
| ! | ATTGGAGATAATAGAAAAAC+AGG | - | chr4_4:14830374-14830393 | None:intergenic | 25.0% |
| CAATTTAATCACCAAGTTTC+AGG | + | chr4_4:14830286-14830305 | Msa0671460:CDS | 30.0% | |
| !!! | TGCTTTTGTTTTCTACAGTA+AGG | + | chr4_4:14830334-14830353 | Msa0671460:intron | 30.0% |
| TAATAGAAAAACAGGAAAGC+GGG | - | chr4_4:14830366-14830385 | None:intergenic | 30.0% | |
| ! | CAAGAAGAAGAATTCTTTTC+AGG | + | chr4_4:14831125-14831144 | Msa0671460:CDS | 30.0% |
| AAAGTTAACAAAGCCAAAAC+GGG | - | chr4_4:14831268-14831287 | None:intergenic | 30.0% | |
| CAAAGTTAACAAAGCCAAAA+CGG | - | chr4_4:14831269-14831288 | None:intergenic | 30.0% | |
| ATTTCGTACTTAGAGTTGAA+TGG | + | chr4_4:14831346-14831365 | Msa0671460:CDS | 30.0% | |
| CAATTTAATCACCAAGTTTC+AGG | + | chr4_4:14830286-14830305 | Msa0671460:CDS | 30.0% | |
| !!! | TGCTTTTGTTTTCTACAGTA+AGG | + | chr4_4:14830334-14830353 | Msa0671460:intron | 30.0% |
| TAATAGAAAAACAGGAAAGC+GGG | - | chr4_4:14830366-14830385 | None:intergenic | 30.0% | |
| ! | CAAGAAGAAGAATTCTTTTC+AGG | + | chr4_4:14831125-14831144 | Msa0671460:CDS | 30.0% |
| AAAGTTAACAAAGCCAAAAC+GGG | - | chr4_4:14831268-14831287 | None:intergenic | 30.0% | |
| CAAAGTTAACAAAGCCAAAA+CGG | - | chr4_4:14831269-14831288 | None:intergenic | 30.0% | |
| ATTTCGTACTTAGAGTTGAA+TGG | + | chr4_4:14831346-14831365 | Msa0671460:CDS | 30.0% | |
| GAAAACAAAAGCAGAAGGTT+TGG | - | chr4_4:14830327-14830346 | None:intergenic | 35.0% | |
| CTGTAGAAAACAAAAGCAGA+AGG | - | chr4_4:14830332-14830351 | None:intergenic | 35.0% | |
| !!! | CGACGACGTTTTTTATCAAA+AGG | + | chr4_4:14830576-14830595 | Msa0671460:CDS | 35.0% |
| TAATGACATGTATTGTCTGC+AGG | + | chr4_4:14830928-14830947 | Msa0671460:intron | 35.0% | |
| TGATTATATACCTCCGATTG+CGG | + | chr4_4:14831032-14831051 | Msa0671460:CDS | 35.0% | |
| !! | CTTCTTCTTGTTGTTGTCAT+CGG | - | chr4_4:14831115-14831134 | None:intergenic | 35.0% |
| !! | GAAGAAGAATTCTTTTCAGG+TGG | + | chr4_4:14831128-14831147 | Msa0671460:CDS | 35.0% |
| TAATGACATGACCAAAAGAC+TGG | - | chr4_4:14831206-14831225 | None:intergenic | 35.0% | |
| !! | GTTTTGATCGACAACAACAT+CGG | - | chr4_4:14831232-14831251 | None:intergenic | 35.0% |
| ! | AGTGCTATTGAAAGACTCAA+TGG | + | chr4_4:14831309-14831328 | Msa0671460:CDS | 35.0% |
| ! | GTGCTATTGAAAGACTCAAT+GGG | + | chr4_4:14831310-14831329 | Msa0671460:CDS | 35.0% |
| CAACTCTAAGTACGAAATTG+TGG | - | chr4_4:14831344-14831363 | None:intergenic | 35.0% | |
| GAAAACAAAAGCAGAAGGTT+TGG | - | chr4_4:14830327-14830346 | None:intergenic | 35.0% | |
| CTGTAGAAAACAAAAGCAGA+AGG | - | chr4_4:14830332-14830351 | None:intergenic | 35.0% | |
| !!! | CGACGACGTTTTTTATCAAA+AGG | + | chr4_4:14830576-14830595 | Msa0671460:CDS | 35.0% |
| TAATGACATGTATTGTCTGC+AGG | + | chr4_4:14830928-14830947 | Msa0671460:intron | 35.0% | |
| TGATTATATACCTCCGATTG+CGG | + | chr4_4:14831032-14831051 | Msa0671460:CDS | 35.0% | |
| !! | CTTCTTCTTGTTGTTGTCAT+CGG | - | chr4_4:14831115-14831134 | None:intergenic | 35.0% |
| !! | GAAGAAGAATTCTTTTCAGG+TGG | + | chr4_4:14831128-14831147 | Msa0671460:CDS | 35.0% |
| TAATGACATGACCAAAAGAC+TGG | - | chr4_4:14831206-14831225 | None:intergenic | 35.0% | |
| !! | GTTTTGATCGACAACAACAT+CGG | - | chr4_4:14831232-14831251 | None:intergenic | 35.0% |
| ! | AGTGCTATTGAAAGACTCAA+TGG | + | chr4_4:14831309-14831328 | Msa0671460:CDS | 35.0% |
| ! | GTGCTATTGAAAGACTCAAT+GGG | + | chr4_4:14831310-14831329 | Msa0671460:CDS | 35.0% |
| CAACTCTAAGTACGAAATTG+TGG | - | chr4_4:14831344-14831363 | None:intergenic | 35.0% | |
| AAATCAACGCTGTCTTCACA+CGG | - | chr4_4:14830266-14830285 | None:intergenic | 40.0% | |
| TGACTATAAACCCCCTCTTA+CGG | + | chr4_4:14830603-14830622 | Msa0671460:CDS | 40.0% | |
| TACAAACATACCCGTAAGAG+GGG | - | chr4_4:14830617-14830636 | None:intergenic | 40.0% | |
| GTACAAACATACCCGTAAGA+GGG | - | chr4_4:14830618-14830637 | None:intergenic | 40.0% | |
| AATACCCATGTCTTTGTGGA+CGG | - | chr4_4:14830719-14830738 | None:intergenic | 40.0% | |
| CCACAAAGACATGGGTATTA+CGG | + | chr4_4:14830720-14830739 | Msa0671460:CDS | 40.0% | |
| CATGTATTGTCTGCAGGTTT+CGG | + | chr4_4:14830934-14830953 | Msa0671460:intron | 40.0% | |
| ACAGTATGACCAGAACTTCT+TGG | - | chr4_4:14830991-14831010 | None:intergenic | 40.0% | |
| GATTATATACCTCCGATTGC+GGG | + | chr4_4:14831033-14831052 | Msa0671460:CDS | 40.0% | |
| TTTGTGGAAGAGATGACTAC+TGG | + | chr4_4:14831084-14831103 | Msa0671460:CDS | 40.0% | |
| !!! | AATTCTTTTCAGGTGGTCGT+AGG | + | chr4_4:14831135-14831154 | Msa0671460:CDS | 40.0% |
| GGAAAAGCTGAAGCAAATCA+GGG | - | chr4_4:14831185-14831204 | None:intergenic | 40.0% | |
| TGGAAAAGCTGAAGCAAATC+AGG | - | chr4_4:14831186-14831205 | None:intergenic | 40.0% | |
| ! | CTTCAGCTTTTCCAGTCTTT+TGG | + | chr4_4:14831192-14831211 | Msa0671460:CDS | 40.0% |
| CTTTGTTAACTTTGCCACCA+GGG | + | chr4_4:14831275-14831294 | Msa0671460:CDS | 40.0% | |
| AAATCAACGCTGTCTTCACA+CGG | - | chr4_4:14830266-14830285 | None:intergenic | 40.0% | |
| TGACTATAAACCCCCTCTTA+CGG | + | chr4_4:14830603-14830622 | Msa0671460:CDS | 40.0% | |
| TACAAACATACCCGTAAGAG+GGG | - | chr4_4:14830617-14830636 | None:intergenic | 40.0% | |
| GTACAAACATACCCGTAAGA+GGG | - | chr4_4:14830618-14830637 | None:intergenic | 40.0% | |
| AATACCCATGTCTTTGTGGA+CGG | - | chr4_4:14830719-14830738 | None:intergenic | 40.0% | |
| CCACAAAGACATGGGTATTA+CGG | + | chr4_4:14830720-14830739 | Msa0671460:CDS | 40.0% | |
| CATGTATTGTCTGCAGGTTT+CGG | + | chr4_4:14830934-14830953 | Msa0671460:intron | 40.0% | |
| ACAGTATGACCAGAACTTCT+TGG | - | chr4_4:14830991-14831010 | None:intergenic | 40.0% | |
| GATTATATACCTCCGATTGC+GGG | + | chr4_4:14831033-14831052 | Msa0671460:CDS | 40.0% | |
| TTTGTGGAAGAGATGACTAC+TGG | + | chr4_4:14831084-14831103 | Msa0671460:CDS | 40.0% | |
| !!! | AATTCTTTTCAGGTGGTCGT+AGG | + | chr4_4:14831135-14831154 | Msa0671460:CDS | 40.0% |
| GGAAAAGCTGAAGCAAATCA+GGG | - | chr4_4:14831185-14831204 | None:intergenic | 40.0% | |
| TGGAAAAGCTGAAGCAAATC+AGG | - | chr4_4:14831186-14831205 | None:intergenic | 40.0% | |
| ! | CTTCAGCTTTTCCAGTCTTT+TGG | + | chr4_4:14831192-14831211 | Msa0671460:CDS | 40.0% |
| CTTTGTTAACTTTGCCACCA+GGG | + | chr4_4:14831275-14831294 | Msa0671460:CDS | 40.0% | |
| TTTCTTCTCCGATCGAAGCT+TGG | + | chr4_4:14830230-14830249 | Msa0671460:five_prime_UTR | 45.0% | |
| GCATCTTTCCAAGCTTCGAT+CGG | - | chr4_4:14830241-14830260 | None:intergenic | 45.0% | |
| AGAGACGTCTTCCTGAAACT+TGG | - | chr4_4:14830300-14830319 | None:intergenic | 45.0% | |
| GACTATAAACCCCCTCTTAC+GGG | + | chr4_4:14830604-14830623 | Msa0671460:CDS | 45.0% | |
| ACAAACATACCCGTAAGAGG+GGG | - | chr4_4:14830616-14830635 | None:intergenic | 45.0% | |
| GGTACAAACATACCCGTAAG+AGG | - | chr4_4:14830619-14830638 | None:intergenic | 45.0% | |
| ACCAGGGTTCTTCTTGTCAT+CGG | - | chr4_4:14830671-14830690 | None:intergenic | 45.0% | |
| AACCCTGGTCTCCTTATGTT+CGG | + | chr4_4:14830682-14830701 | Msa0671460:CDS | 45.0% | |
| TATGCCGTCCACAAAGACAT+GGG | + | chr4_4:14830712-14830731 | Msa0671460:CDS | 45.0% | |
| CCGTAATACCCATGTCTTTG+TGG | - | chr4_4:14830723-14830742 | None:intergenic | 45.0% | |
| TCGTATGCAAACCACCATGA+GGG | - | chr4_4:14830778-14830797 | None:intergenic | 45.0% | |
| GGTACAAACATACCCGCAAT+CGG | - | chr4_4:14831048-14831067 | None:intergenic | 45.0% | |
| GTTTGTACCTCCATACCTGA+AGG | + | chr4_4:14831059-14831078 | Msa0671460:CDS | 45.0% | |
| ACAAAAGCCTTCAGGTATGG+AGG | - | chr4_4:14831069-14831088 | None:intergenic | 45.0% | |
| ! | TCCATACCTGAAGGCTTTTG+TGG | + | chr4_4:14831068-14831087 | Msa0671460:CDS | 45.0% |
| TCCACAAAAGCCTTCAGGTA+TGG | - | chr4_4:14831072-14831091 | None:intergenic | 45.0% | |
| TCTCTTCCACAAAAGCCTTC+AGG | - | chr4_4:14831077-14831096 | None:intergenic | 45.0% | |
| ! | GCTTTGTTAACTTTGCCACC+AGG | + | chr4_4:14831274-14831293 | Msa0671460:CDS | 45.0% |
| TTTCTTCTCCGATCGAAGCT+TGG | + | chr4_4:14830230-14830249 | Msa0671460:five_prime_UTR | 45.0% | |
| GCATCTTTCCAAGCTTCGAT+CGG | - | chr4_4:14830241-14830260 | None:intergenic | 45.0% | |
| AGAGACGTCTTCCTGAAACT+TGG | - | chr4_4:14830300-14830319 | None:intergenic | 45.0% | |
| GACTATAAACCCCCTCTTAC+GGG | + | chr4_4:14830604-14830623 | Msa0671460:CDS | 45.0% | |
| ACAAACATACCCGTAAGAGG+GGG | - | chr4_4:14830616-14830635 | None:intergenic | 45.0% | |
| GGTACAAACATACCCGTAAG+AGG | - | chr4_4:14830619-14830638 | None:intergenic | 45.0% | |
| ACCAGGGTTCTTCTTGTCAT+CGG | - | chr4_4:14830671-14830690 | None:intergenic | 45.0% | |
| AACCCTGGTCTCCTTATGTT+CGG | + | chr4_4:14830682-14830701 | Msa0671460:CDS | 45.0% | |
| TATGCCGTCCACAAAGACAT+GGG | + | chr4_4:14830712-14830731 | Msa0671460:CDS | 45.0% | |
| CCGTAATACCCATGTCTTTG+TGG | - | chr4_4:14830723-14830742 | None:intergenic | 45.0% | |
| TCGTATGCAAACCACCATGA+GGG | - | chr4_4:14830778-14830797 | None:intergenic | 45.0% | |
| GGTACAAACATACCCGCAAT+CGG | - | chr4_4:14831048-14831067 | None:intergenic | 45.0% | |
| GTTTGTACCTCCATACCTGA+AGG | + | chr4_4:14831059-14831078 | Msa0671460:CDS | 45.0% | |
| ACAAAAGCCTTCAGGTATGG+AGG | - | chr4_4:14831069-14831088 | None:intergenic | 45.0% | |
| ! | TCCATACCTGAAGGCTTTTG+TGG | + | chr4_4:14831068-14831087 | Msa0671460:CDS | 45.0% |
| TCCACAAAAGCCTTCAGGTA+TGG | - | chr4_4:14831072-14831091 | None:intergenic | 45.0% | |
| TCTCTTCCACAAAAGCCTTC+AGG | - | chr4_4:14831077-14831096 | None:intergenic | 45.0% | |
| ! | GCTTTGTTAACTTTGCCACC+AGG | + | chr4_4:14831274-14831293 | Msa0671460:CDS | 45.0% |
| !!! | AATAAAAAAGAATTTTATAT+TGG | - | chr4_4:14830392-14830411 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTATTTTAGTT+AGG | + | chr4_4:14830403-14830422 | Msa0671460:intron | 5.0% |
| !!! | TTTTTATTTTATTTTAGTTA+GGG | + | chr4_4:14830404-14830423 | Msa0671460:intron | 5.0% |
| !!! | AATAAAAAAGAATTTTATAT+TGG | - | chr4_4:14830392-14830411 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTATTTTAGTT+AGG | + | chr4_4:14830403-14830422 | Msa0671460:intron | 5.0% |
| !!! | TTTTTATTTTATTTTAGTTA+GGG | + | chr4_4:14830404-14830423 | Msa0671460:intron | 5.0% |
| TATGTTTGTACCTCCCTGCC+TGG | + | chr4_4:14830627-14830646 | Msa0671460:CDS | 50.0% | |
| CTTCTTGTCATCGGATGACC+CGG | - | chr4_4:14830662-14830681 | None:intergenic | 50.0% | |
| TCCGATGACAAGAAGAACCC+TGG | + | chr4_4:14830667-14830686 | Msa0671460:CDS | 50.0% | |
| ACCCTGGTCTCCTTATGTTC+GGG | + | chr4_4:14830683-14830702 | Msa0671460:CDS | 50.0% | |
| CATAGCTGTCCCCGAACATA+AGG | - | chr4_4:14830696-14830715 | None:intergenic | 50.0% | |
| CTATGCCGTCCACAAAGACA+TGG | + | chr4_4:14830711-14830730 | Msa0671460:CDS | 50.0% | |
| GGATCACGGACATGAGGTTT+GGG | - | chr4_4:14830757-14830776 | None:intergenic | 50.0% | |
| CAAACCACCATGAGGGATCA+CGG | - | chr4_4:14830771-14830790 | None:intergenic | 50.0% | |
| GTCGTATGCAAACCACCATG+AGG | - | chr4_4:14830779-14830798 | None:intergenic | 50.0% | |
| TTCCCTCGTCCAAGAAGTTC+TGG | + | chr4_4:14830979-14830998 | Msa0671460:CDS | 50.0% | |
| GACCAGAACTTCTTGGACGA+GGG | - | chr4_4:14830984-14831003 | None:intergenic | 50.0% | |
| TGACCAGAACTTCTTGGACG+AGG | - | chr4_4:14830985-14831004 | None:intergenic | 50.0% | |
| ACAAACATACCCGCAATCGG+AGG | - | chr4_4:14831045-14831064 | None:intergenic | 50.0% | |
| CAGGGTTCCTTGTCTCGTAT+GGG | - | chr4_4:14831167-14831186 | None:intergenic | 50.0% | |
| TCAGGGTTCCTTGTCTCGTA+TGG | - | chr4_4:14831168-14831187 | None:intergenic | 50.0% | |
| TATGTTTGTACCTCCCTGCC+TGG | + | chr4_4:14830627-14830646 | Msa0671460:CDS | 50.0% | |
| CTTCTTGTCATCGGATGACC+CGG | - | chr4_4:14830662-14830681 | None:intergenic | 50.0% | |
| TCCGATGACAAGAAGAACCC+TGG | + | chr4_4:14830667-14830686 | Msa0671460:CDS | 50.0% | |
| ACCCTGGTCTCCTTATGTTC+GGG | + | chr4_4:14830683-14830702 | Msa0671460:CDS | 50.0% | |
| CATAGCTGTCCCCGAACATA+AGG | - | chr4_4:14830696-14830715 | None:intergenic | 50.0% | |
| CTATGCCGTCCACAAAGACA+TGG | + | chr4_4:14830711-14830730 | Msa0671460:CDS | 50.0% | |
| GGATCACGGACATGAGGTTT+GGG | - | chr4_4:14830757-14830776 | None:intergenic | 50.0% | |
| CAAACCACCATGAGGGATCA+CGG | - | chr4_4:14830771-14830790 | None:intergenic | 50.0% | |
| GTCGTATGCAAACCACCATG+AGG | - | chr4_4:14830779-14830798 | None:intergenic | 50.0% | |
| TTCCCTCGTCCAAGAAGTTC+TGG | + | chr4_4:14830979-14830998 | Msa0671460:CDS | 50.0% | |
| GACCAGAACTTCTTGGACGA+GGG | - | chr4_4:14830984-14831003 | None:intergenic | 50.0% | |
| TGACCAGAACTTCTTGGACG+AGG | - | chr4_4:14830985-14831004 | None:intergenic | 50.0% | |
| ACAAACATACCCGCAATCGG+AGG | - | chr4_4:14831045-14831064 | None:intergenic | 50.0% | |
| CAGGGTTCCTTGTCTCGTAT+GGG | - | chr4_4:14831167-14831186 | None:intergenic | 50.0% | |
| TCAGGGTTCCTTGTCTCGTA+TGG | - | chr4_4:14831168-14831187 | None:intergenic | 50.0% | |
| TCAACGCTGTCTTCACACGG+TGG | - | chr4_4:14830263-14830282 | None:intergenic | 55.0% | |
| ATGACCCGGTAGTCATCTCC+AGG | - | chr4_4:14830648-14830667 | None:intergenic | 55.0% | |
| CCCCGAACATAAGGAGACCA+GGG | - | chr4_4:14830687-14830706 | None:intergenic | 55.0% | |
| CCCTGGTCTCCTTATGTTCG+GGG | + | chr4_4:14830684-14830703 | Msa0671460:CDS | 55.0% | |
| TCCCCGAACATAAGGAGACC+AGG | - | chr4_4:14830688-14830707 | None:intergenic | 55.0% | |
| GGGATCACGGACATGAGGTT+TGG | - | chr4_4:14830758-14830777 | None:intergenic | 55.0% | |
| CATGAGGGATCACGGACATG+AGG | - | chr4_4:14830763-14830782 | None:intergenic | 55.0% | |
| CTCATGTCCGTGATCCCTCA+TGG | + | chr4_4:14830761-14830780 | Msa0671460:CDS | 55.0% | |
| ATGTCCGTGATCCCTCATGG+TGG | + | chr4_4:14830764-14830783 | Msa0671460:CDS | 55.0% | |
| GCAACCTCCCATACGAGACA+AGG | + | chr4_4:14831157-14831176 | Msa0671460:CDS | 55.0% | |
| GGTTCCTTGTCTCGTATGGG+AGG | - | chr4_4:14831164-14831183 | None:intergenic | 55.0% | |
| ! | TCCGACTGTAGTGCCCGTTT+TGG | + | chr4_4:14831252-14831271 | Msa0671460:CDS | 55.0% |
| GCCAAAACGGGCACTACAGT+CGG | - | chr4_4:14831256-14831275 | None:intergenic | 55.0% | |
| TCAACGCTGTCTTCACACGG+TGG | - | chr4_4:14830263-14830282 | None:intergenic | 55.0% | |
| ATGACCCGGTAGTCATCTCC+AGG | - | chr4_4:14830648-14830667 | None:intergenic | 55.0% | |
| CCCCGAACATAAGGAGACCA+GGG | - | chr4_4:14830687-14830706 | None:intergenic | 55.0% | |
| CCCTGGTCTCCTTATGTTCG+GGG | + | chr4_4:14830684-14830703 | Msa0671460:CDS | 55.0% | |
| TCCCCGAACATAAGGAGACC+AGG | - | chr4_4:14830688-14830707 | None:intergenic | 55.0% | |
| GGGATCACGGACATGAGGTT+TGG | - | chr4_4:14830758-14830777 | None:intergenic | 55.0% | |
| CATGAGGGATCACGGACATG+AGG | - | chr4_4:14830763-14830782 | None:intergenic | 55.0% | |
| CTCATGTCCGTGATCCCTCA+TGG | + | chr4_4:14830761-14830780 | Msa0671460:CDS | 55.0% | |
| ATGTCCGTGATCCCTCATGG+TGG | + | chr4_4:14830764-14830783 | Msa0671460:CDS | 55.0% | |
| GCAACCTCCCATACGAGACA+AGG | + | chr4_4:14831157-14831176 | Msa0671460:CDS | 55.0% | |
| GGTTCCTTGTCTCGTATGGG+AGG | - | chr4_4:14831164-14831183 | None:intergenic | 55.0% | |
| ! | TCCGACTGTAGTGCCCGTTT+TGG | + | chr4_4:14831252-14831271 | Msa0671460:CDS | 55.0% |
| GCCAAAACGGGCACTACAGT+CGG | - | chr4_4:14831256-14831275 | None:intergenic | 55.0% | |
| GTAGTCATCTCCAGGCAGGG+AGG | - | chr4_4:14830640-14830659 | None:intergenic | 60.0% | |
| CCGGTAGTCATCTCCAGGCA+GGG | - | chr4_4:14830643-14830662 | None:intergenic | 60.0% | |
| CCCTGCCTGGAGATGACTAC+CGG | + | chr4_4:14830640-14830659 | Msa0671460:CDS | 60.0% | |
| CCTGCCTGGAGATGACTACC+GGG | + | chr4_4:14830641-14830660 | Msa0671460:CDS | 60.0% | |
| GTCTGCAGGTTTCGGCAACG+AGG | + | chr4_4:14830942-14830961 | Msa0671460:intron | 60.0% | |
| ACTCTGAGCAGCTTCCCTGG+TGG | - | chr4_4:14831292-14831311 | None:intergenic | 60.0% | |
| AGCACTCTGAGCAGCTTCCC+TGG | - | chr4_4:14831295-14831314 | None:intergenic | 60.0% | |
| GTAGTCATCTCCAGGCAGGG+AGG | - | chr4_4:14830640-14830659 | None:intergenic | 60.0% | |
| CCGGTAGTCATCTCCAGGCA+GGG | - | chr4_4:14830643-14830662 | None:intergenic | 60.0% | |
| CCCTGCCTGGAGATGACTAC+CGG | + | chr4_4:14830640-14830659 | Msa0671460:CDS | 60.0% | |
| CCTGCCTGGAGATGACTACC+GGG | + | chr4_4:14830641-14830660 | Msa0671460:CDS | 60.0% | |
| GTCTGCAGGTTTCGGCAACG+AGG | + | chr4_4:14830942-14830961 | Msa0671460:intron | 60.0% | |
| ACTCTGAGCAGCTTCCCTGG+TGG | - | chr4_4:14831292-14831311 | None:intergenic | 60.0% | |
| AGCACTCTGAGCAGCTTCCC+TGG | - | chr4_4:14831295-14831314 | None:intergenic | 60.0% | |
| CCCGGTAGTCATCTCCAGGC+AGG | - | chr4_4:14830644-14830663 | None:intergenic | 65.0% | |
| CCCGGTAGTCATCTCCAGGC+AGG | - | chr4_4:14830644-14830663 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 14830210 | 14831389 | 14830210 | ID=Msa0671460;Name=Msa0671460 |
| chr4_4 | mRNA | 14830210 | 14831389 | 14830210 | ID=Msa0671460-mRNA-1;Parent=Msa0671460;Name=Msa0671460-mRNA-1;_AED=0.09;_eAED=0.12;_QI=47|0.5|0.33|1|1|1|3|0|255 |
| chr4_4 | exon | 14830210 | 14830350 | 14830210 | ID=Msa0671460-mRNA-1:exon:4516;Parent=Msa0671460-mRNA-1 |
| chr4_4 | exon | 14830566 | 14830799 | 14830566 | ID=Msa0671460-mRNA-1:exon:4517;Parent=Msa0671460-mRNA-1 |
| chr4_4 | exon | 14830950 | 14831389 | 14830950 | ID=Msa0671460-mRNA-1:exon:4518;Parent=Msa0671460-mRNA-1 |
| chr4_4 | five_prime_UTR | 14830210 | 14830256 | 14830210 | ID=Msa0671460-mRNA-1:five_prime_utr;Parent=Msa0671460-mRNA-1 |
| chr4_4 | CDS | 14830257 | 14830350 | 14830257 | ID=Msa0671460-mRNA-1:cds;Parent=Msa0671460-mRNA-1 |
| chr4_4 | CDS | 14830566 | 14830799 | 14830566 | ID=Msa0671460-mRNA-1:cds;Parent=Msa0671460-mRNA-1 |
| chr4_4 | CDS | 14830950 | 14831389 | 14830950 | ID=Msa0671460-mRNA-1:cds;Parent=Msa0671460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
